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Conserved domains on  [gi|1034656094|ref|XP_016867858|]
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inhibitor of growth protein 3 isoform X2 [Homo sapiens]

Protein Classification

ING_ING3_Yng2p domain-containing protein( domain architecture ID 10585698)

ING_ING3_Yng2p domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ING pfam12998
Inhibitor of growth proteins N-terminal histone-binding; Histones undergo numerous ...
3-89 1.08e-26

Inhibitor of growth proteins N-terminal histone-binding; Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterized C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail.


:

Pssm-ID: 463768  Cd Length: 100  Bit Score: 93.75  E-value: 1.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094   3 YLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQL 82
Cdd:pfam12998   1 YLEDYLDDLENLPLELQRNFTELREIDAKVQELLKEIDSQIQKFIKQNGSLTPNPKEEELSKIQEELKKAQELQDEKIQL 80

                  ....*..
gi 1034656094  83 ANQIYDL 89
Cdd:pfam12998  81 ANQALEL 87
 
Name Accession Description Interval E-value
ING pfam12998
Inhibitor of growth proteins N-terminal histone-binding; Histones undergo numerous ...
3-89 1.08e-26

Inhibitor of growth proteins N-terminal histone-binding; Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterized C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail.


Pssm-ID: 463768  Cd Length: 100  Bit Score: 93.75  E-value: 1.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094   3 YLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQL 82
Cdd:pfam12998   1 YLEDYLDDLENLPLELQRNFTELREIDAKVQELLKEIDSQIQKFIKQNGSLTPNPKEEELSKIQEELKKAQELQDEKIQL 80

                  ....*..
gi 1034656094  83 ANQIYDL 89
Cdd:pfam12998  81 ANQALEL 87
ING_ING3_Yng2p cd16858
Inhibitor of growth (ING) domain of inhibitor of growth protein 3 (ING3), Yng2p and similar ...
11-89 1.02e-23

Inhibitor of growth (ING) domain of inhibitor of growth protein 3 (ING3), Yng2p and similar proteins; ING3, also termed p47ING3, is a member of the inhibitor of growth (ING) family of type II tumor suppressors. It is ubiquitously expressed and has been implicated in transcription modulation, cell cycle control, and the induction of apoptosis. It is an important subunit of human NuA4 histone acetyltransferase complex, which regulates the acetylation of histones H2A and H4. Moreover, ING3 promotes ultraviolet (UV)-induced apoptosis through the Fas/caspase-8-dependent pathway in melanoma cells. It physically interacts with subunits of E3 ligase Skp1-Cullin-F-boxprotein complex (SCF complex) and is degraded by the SCF (F-box protein S-phase kinase-associated protein 2, Skp2)-mediated ubiquitin-proteasome system. It also acts as a suppression factor during tumorigenesis and progression of hepatocellular carcinoma (HCC). Yeast chromatin modification-related protein Yng2p, also termed ESA1-associated factor 4 or ING1 homolog 2, is a subunit of the NuA4 histone acetyltransferase (HAT) complex. It plays a critical role in intra-S-phase DNA damage response. Members of this family contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain.


Pssm-ID: 341091  Cd Length: 92  Bit Score: 86.10  E-value: 1.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094 11 IEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNK----PEWREEQMASIKKDYYKALEDADEKVQLANQI 86
Cdd:cd16858    1 LENLPSELRHLLTEIREKDLQVQELLDRIQQRDAKLFKHIKKNGsltpNPKEEELYEKIREDYDKALELADEKVELANRL 80

                 ...
gi 1034656094 87 YDL 89
Cdd:cd16858   81 LDL 83
TNG2 COG5034
Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics];
4-86 5.76e-07

Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics];


Pssm-ID: 227367 [Multi-domain]  Cd Length: 271  Bit Score: 45.31  E-value: 5.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094   4 LEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVS--EFFMNAKKNKPEWREEQMASIKKDYY-KALEDADEKV 80
Cdd:COG5034     7 LNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISilKKIIDLDSQTYEEVEDGLLKEIRELLlKAIYIQKEKS 86

                  ....*.
gi 1034656094  81 QLANQI 86
Cdd:COG5034    87 DLADRA 92
 
Name Accession Description Interval E-value
ING pfam12998
Inhibitor of growth proteins N-terminal histone-binding; Histones undergo numerous ...
3-89 1.08e-26

Inhibitor of growth proteins N-terminal histone-binding; Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterized C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail.


Pssm-ID: 463768  Cd Length: 100  Bit Score: 93.75  E-value: 1.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094   3 YLEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQL 82
Cdd:pfam12998   1 YLEDYLDDLENLPLELQRNFTELREIDAKVQELLKEIDSQIQKFIKQNGSLTPNPKEEELSKIQEELKKAQELQDEKIQL 80

                  ....*..
gi 1034656094  83 ANQIYDL 89
Cdd:pfam12998  81 ANQALEL 87
ING_ING3_Yng2p cd16858
Inhibitor of growth (ING) domain of inhibitor of growth protein 3 (ING3), Yng2p and similar ...
11-89 1.02e-23

Inhibitor of growth (ING) domain of inhibitor of growth protein 3 (ING3), Yng2p and similar proteins; ING3, also termed p47ING3, is a member of the inhibitor of growth (ING) family of type II tumor suppressors. It is ubiquitously expressed and has been implicated in transcription modulation, cell cycle control, and the induction of apoptosis. It is an important subunit of human NuA4 histone acetyltransferase complex, which regulates the acetylation of histones H2A and H4. Moreover, ING3 promotes ultraviolet (UV)-induced apoptosis through the Fas/caspase-8-dependent pathway in melanoma cells. It physically interacts with subunits of E3 ligase Skp1-Cullin-F-boxprotein complex (SCF complex) and is degraded by the SCF (F-box protein S-phase kinase-associated protein 2, Skp2)-mediated ubiquitin-proteasome system. It also acts as a suppression factor during tumorigenesis and progression of hepatocellular carcinoma (HCC). Yeast chromatin modification-related protein Yng2p, also termed ESA1-associated factor 4 or ING1 homolog 2, is a subunit of the NuA4 histone acetyltransferase (HAT) complex. It plays a critical role in intra-S-phase DNA damage response. Members of this family contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain.


Pssm-ID: 341091  Cd Length: 92  Bit Score: 86.10  E-value: 1.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094 11 IEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNK----PEWREEQMASIKKDYYKALEDADEKVQLANQI 86
Cdd:cd16858    1 LENLPSELRHLLTEIREKDLQVQELLDRIQQRDAKLFKHIKKNGsltpNPKEEELYEKIREDYDKALELADEKVELANRL 80

                 ...
gi 1034656094 87 YDL 89
Cdd:cd16858   81 LDL 83
ING_ING4_5 cd16859
Inhibitor of growth (ING) domain of inhibitor of growth protein ING4, ING5, and similar ...
11-89 1.14e-15

Inhibitor of growth (ING) domain of inhibitor of growth protein ING4, ING5, and similar proteins; ING4, also termed p29ING4, and ING5, also termed p28ING5, belong to the inhibitor of growth (ING) family of type II tumor suppressors. ING4 acts as an E3 ubiquitin ligase to induce ubiquitination of the p65 subunit of NF-kappaB and inhibit the transactivation of NF-kappaB target genes. It also induces apoptosis through a p53 dependent pathway, including increasing p53 acetylation, inhibiting Mdm2-mediated degradation of p53, and enhancing the expression of p53 responsive genes both at the transcriptional and post-translational levels. Moreover, ING4 can inhibit the translation of proto-oncogene MYC by interacting with AUF1. It also regulates other transcription factors, such as hypoxia-inducible factor (HIF). ING5 is a Tip60 cofactor that acetylates p53 at K120 and subsequently activates the expression of p53-dependent apoptotic genes in response to DNA damage. Aberrant ING5 expression may contribute to pathogenesis, growth, and invasion of gastric carcinomas and colorectal cancer. ING5 can physically interact with p300 and p53 in vivo, and its overexpression induces apoptosis in colorectal cancer cells. It also associates with Inhibitor of cyclin A1 (INCA1) and functions as a growth suppressor with suppressed expression in Acute Myeloid Leukemia (AML). Moreover, ING5 translocation from the nucleus to the cytoplasm might be a critical event for carcinogenesis and tumor progression in human head and neck squamous cell carcinoma. Both ING4 and ING5 contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain. They associate with histone acetyltransferase (HAT) complexes containing MOZ (monocytic leukemia zinc finger protein)/MORF (MOZ-related factor) and HBO1, and further direct the MOZ/MORF and HBO1 complexes to chromatin.


Pssm-ID: 341092  Cd Length: 91  Bit Score: 65.30  E-value: 1.14e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034656094 11 IEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYDL 89
Cdd:cd16859    1 LESLPLELQRNFSLMRELDARVQDLLAEIEKLLREYLKTVKSLSKEERRELLKEIQDLFAKAKELSEEKVQLATQTYET 79
ING_ING4 cd16862
Inhibitor of growth (ING) domain of inhibitor of growth protein 4 (ING4); ING4, also termed ...
8-89 6.74e-09

Inhibitor of growth (ING) domain of inhibitor of growth protein 4 (ING4); ING4, also termed p29ING4, is a member of the inhibitor of growth (ING) family of type II tumor suppressors. It acts as an E3 ubiquitin ligase to induce ubiquitination of the p65 subunit of NF-kappaB and inhibit the transactivation of NF-kappaB target genes. It also induces apoptosis through a p53 dependent pathway, including increasing p53 acetylation, inhibiting Mdm2-mediated degradation of p53 and enhancing the expression of p53 responsive genes both at the transcriptional and post-translational levels. Moreover, ING4 can inhibit the translation of proto-oncogene MYC by interacting with AUF1. It also regulates other transcription factors, such as hypoxia-inducible factor (HIF). In addition, ING4 associates with histone acetyltransferase (HAT) complexes containing MOZ (monocytic leukemia zinc finger protein)/MORF (MOZ-related factor) and HBO1, and further directs the MOZ/MORF and HBO1 complexes to chromatin. ING4 contains an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain.


Pssm-ID: 341095  Cd Length: 94  Bit Score: 48.42  E-value: 6.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094  8 LEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIY 87
Cdd:cd16862    1 LDSIENLPFELQRNFQLMRDLDQRTEDLKVEIDKLATEYVSNARSLSSEEKLKLLKQIQEAYGKCKEFGDDKVQLAMQTY 80

                 ..
gi 1034656094 88 DL 89
Cdd:cd16862   81 EM 82
ING_ING5 cd16863
Inhibitor of growth (ING) domain of inhibitor of growth protein 5 (ING5); ING5, also termed ...
11-89 1.12e-08

Inhibitor of growth (ING) domain of inhibitor of growth protein 5 (ING5); ING5, also termed p28ING5, is a member of the inhibitor of growth (ING) family of type II tumor suppressors. It acts as a Tip60 cofactor that acetylates p53 at K120 and subsequently activates the expression of p53-dependent apoptotic genes in response to DNA damage. Aberrant ING5 expression may contribute to pathogenesis, growth, and invasion of gastric carcinomas and colorectal cancer. ING5 can physically interact with p300 and p53 in vivo, and its overexpression induces apoptosis in colorectal cancer cells. It also associates with Inhibitor of cyclin A1 (INCA1) and functions as a growth suppressor with suppressed expression in Acute Myeloid Leukemia (AML). Moreover, ING5 translocation from the nucleus to the cytoplasm might be a critical event for carcinogenesis and tumor progression in human head and neck squamous cell carcinoma. In addition, ING5 associates with histone acetyltransferase (HAT) complexes containing MOZ (monocytic leukemia zinc finger protein)/MORF (MOZ-related factor) and HBO1, and further directs the MOZ/MORF and HBO1 complexes to chromatin. ING5 contains an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain.


Pssm-ID: 341096  Cd Length: 93  Bit Score: 47.61  E-value: 1.12e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034656094 11 IEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYDL 89
Cdd:cd16863    3 IENLPCELQRNFQLMRDLDQRTEDKKAEIDKLASEYIANVKNLSPEQRVEHLKKIQSAYSKCKEYSDDKVQLAMQTYEM 81
ING_ING1_2 cd16857
Inhibitor of growth (ING) domain of inhibitor of growth protein ING1, ING2, and similar ...
8-89 2.08e-08

Inhibitor of growth (ING) domain of inhibitor of growth protein ING1, ING2, and similar proteins; ING1 is an epigenetic regulator and a type II tumor suppressor that impacts cell growth, aging, apoptosis, and DNA repair, by affecting chromatin conformation and gene expression. It acts as a reader of the active chromatin mark, the trimethylation of histone H3 lysine 4 (H3K4me3). It binds and directs growth arrest and DNA damage inducible protein 45 a (Gadd45a) to target sites, thus linking the histone code with DNA demethylation. It interacts with the proliferating cell nuclear antigen (PCNA) via the PCNA-interacting protein (PIP) domain in a UV-inducible manner. It also interacts with a PCNA-interacting protein, p15 (PAF). Moreover, ING1 associates with members of the 14-3-3 family, which is necessary for cytoplasmic relocalization. Endogenous ING1 protein specifically interacts with the pro-apoptotic BCL2 family member BAX and colocalizes with BAX in a UV-inducible manner. It stabilizes the p53 tumor suppressor by inhibiting polyubiquitination of multi-monoubiquitinated forms via interaction with and colocalization of the herpesvirus-associated ubiquitin-specific protease (HAUSP)-deubiquitinase with p53. It is also involved in trichostatin A-induced apoptosis and caspase 3 signaling in p53-deficient glioblastoma cells. In addition, tyrosine kinase Src can bind and phosphorylate ING1 and further regulates its activity. ING2, also termed inhibitor of growth 1-like protein (ING1Lp), or p32, or p33ING2, is a core component of a multi-factor chromatin-modifying complex containing the transcriptional co-repressor SIN3A and histone deacetylase 1 (HDAC1). It has been implicated in the control of cell cycle, in genome stability, and in muscle differentiation. ING2 independently interacts with H3K4me3 (Histone H3 trimethylated on lysine 4) and PtdIns(5)P, and modulates crosstalk between lysine methylation and lysine acetylation on histone proteins through association with chromatin in the presence of DNA damage. It collaborates with SnoN to mediate transforming growth factor (TGF)-beta-induced Smad-dependent transcription and cellular responses. It is upregulated in colon cancer and increases invasion by enhanced MMP13 expression. It also acts as a cofactor of p300 for p53 acetylation and plays a positive regulatory role during p53-mediated replicative senescence. Both ING1 and ING2 contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain.


Pssm-ID: 341090  Cd Length: 89  Bit Score: 46.85  E-value: 2.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094  8 LEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKpeWREEQMASIKKDYYKALEDADEKVQLANQIY 87
Cdd:cd16857    1 LDCVENLPGDVQRNLSLMRELDKRYQEILNELEELYEEYLREDDESH--AKKRLLARIQKLLIRSQELGDEKLQIVSQIL 78

                 ..
gi 1034656094 88 DL 89
Cdd:cd16857   79 DL 80
TNG2 COG5034
Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics];
4-86 5.76e-07

Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics];


Pssm-ID: 227367 [Multi-domain]  Cd Length: 271  Bit Score: 45.31  E-value: 5.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094   4 LEDYLEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVS--EFFMNAKKNKPEWREEQMASIKKDYY-KALEDADEKV 80
Cdd:COG5034     7 LNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISilKKIIDLDSQTYEEVEDGLLKEIRELLlKAIYIQKEKS 86

                  ....*.
gi 1034656094  81 QLANQI 86
Cdd:COG5034    87 DLADRA 92
ING_plant cd17015
Inhibitor of growth (ING) domain of plant inhibitor of growth proteins; This subfamily is ...
14-89 1.12e-06

Inhibitor of growth (ING) domain of plant inhibitor of growth proteins; This subfamily is composed of mainly plant inhibitor of growth proteins such as Arabidopsis thaliana ING1 (AtING1 or PHD finger protein ING1) and ING2 (AtING2 or PHD finger protein ING2). They are histone-binding components that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. The related mammalian ING proteins act as readers and writers of the histone epigenetic code, affecting DNA damage response, chromatin remodeling, cellular senescence, differentiation, cell cycle regulation, and apoptosis. They may have a general role in mediating the cellular response to genotoxic stress through binding to and regulating the activities of histone acetyltransferase (HAT) and histone deacetylase (HDAC) chromatin remodeling complexes. All ING proteins contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain that binds unmodified H3 tails, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain, which binds lysine 4-tri-methylated histone H3 (H3K4me3). Although these two regions can bind histones independently, together they increase the apparent association of the ING domain for the H3 tail.


Pssm-ID: 341097 [Multi-domain]  Cd Length: 98  Bit Score: 42.66  E-value: 1.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094 14 LPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAK---KNKPEWREEQMASIKKDYYKALED----ADEKVQLANQI 86
Cdd:cd17015    4 LPAELQRNLSLIRDLDERSQALQDQVEQKCERCLEEPSqssESASSSDDTAAAALREEIESAQKDclqlADEKVALAQQA 83

                 ...
gi 1034656094 87 YDL 89
Cdd:cd17015   84 YDL 86
ING_Pho23p_like cd17016
Inhibitor of growth (ING) domain of yeast Pho23p and similar proteins; This family is composed ...
11-88 3.84e-05

Inhibitor of growth (ING) domain of yeast Pho23p and similar proteins; This family is composed of Saccharomyces cerevisiae transcriptional regulatory protein PHO23 (Pho23p), Schizosaccharomyces pombe chromatin modification-related protein png2 (also called ING1 homolog 2), and similar proteins. Pho23p is part of Rpd3/Sin3 histone deacetylase (HDAC) complex. It is required for the normal function of Rpd3 in the silencing of rDNA, telomeric, and mating-type loci. Pho23p inhibits p53-dependent transcription. The related mammalian ING proteins act as readers and writers of the histone epigenetic code, affecting DNA damage response, chromatin remodeling, cellular senescence, differentiation, cell cycle regulation and apoptosis. They may have a general role in mediating the cellular response to genotoxic stress through binding to and regulating the activities of histone acetyltransferase (HAT) and histone deacetylase (HDAC) chromatin remodeling complexes. All ING proteins contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain that binds unmodified H3 tails, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3). Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail.


Pssm-ID: 341098  Cd Length: 89  Bit Score: 38.44  E-value: 3.84e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034656094 11 IEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMN-AKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYD 88
Cdd:cd17016    1 IEALPLEVMRYFTLLKEVDAKCRNPEPELNDLIDEFLKNpVEEQDKLERRELLSRLRKKLQEILPSLDEKMHVASDAND 79
ING cd16101
Inhibitor of growth (ING) domain family; The Inhibitor of growth (ING) family includes a group ...
11-89 4.03e-05

Inhibitor of growth (ING) domain family; The Inhibitor of growth (ING) family includes a group of tumor suppressors, ING1-5, which act as readers and writers of the histone epigenetic code, affecting DNA damage response, chromatin remodeling, cellular senescence, differentiation, cell cycle regulation, and apoptosis. They may have a general role in mediating the cellular response to genotoxic stress through binding to and regulating the activities of histone acetyltransferase (HAT) and histone deacetylase (HDAC) chromatin remodeling complexes. All ING proteins contain an N-terminal leucine zipper-like (LZL) motif-containing ING domain that binds unmodified H3 tails, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain, which binds lysine 4-tri-methylated histone H3 (H3K4me3). Although these two regions can bind histones independently, together they increase the apparent association of the ING domain for the H3 tail. The ING family also includes three yeast orthologs, chromatin modification-related protein YNG1 (Yng1p), YNG2 (Yng2p), and transcriptional regulatory protein PHO23 (Pho23p). Yng1p, also termed ING1 homolog 1, is one of the components of the NuA3 histone acetyltransferase (HAT) complex. Yng2p, also termed ESA1-associated factor 4, or ING1 homolog 2, is a subunit of the NuA4 HAT complex. It plays a critical role in intra-S-phase DNA damage response. Pho23p is part of Rpd3/Sin3 histone deacetylase (HDAC) complex. It is required for the normal function of Rpd3 in the silencing of rDNA, telomeric, and mating-type loci. Yng1p and Pho23p inhibit p53-dependent transcription. In contrast, Yng2p has the opposite effect.


Pssm-ID: 341089  Cd Length: 88  Bit Score: 38.47  E-value: 4.03e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034656094 11 IEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYDL 89
Cdd:cd16101    1 LSHLPFELRRLLTLIRELDEKKTELQKEIDELAKELLKSARIESHQQKRRLLDEIRQLYEKSIELSDEKVQLSSQAYEL 79
ING_ING1 cd16860
Inhibitor of growth (ING) domain of inhibitor of growth protein 1 (ING1); ING1 is an ...
8-89 3.01e-03

Inhibitor of growth (ING) domain of inhibitor of growth protein 1 (ING1); ING1 is an epigenetic regulator and a type II tumor suppressor that impacts cell growth, aging, apoptosis, and DNA repair, by affecting chromatin conformation and gene expression. It acts as a reader of the active chromatin mark, the trimethylation of histone H3 lysine 4 (H3K4me3). It binds and directs growth arrest and DNA damage inducible protein 45 a (Gadd45a) to target sites, thus linking the histone code with DNA demethylation. It interacts with the proliferating cell nuclear antigen (PCNA) via the PCNA-interacting protein (PIP) domain in a UV-inducible manner. It also interacts with a PCNA-interacting protein, p15 (PAF). Moreover, ING1 associates with members of the 14-3-3 family, which is necessary for the cytoplasmic relocalization. Endogenous ING1 protein specifically interacts with the pro-apoptotic BCL2 family member BAX and colocalizes with BAX in a UV-inducible manner. It stabilizes the p53 tumor suppressor by inhibiting polyubiquitination of multi-monoubiquitinated forms via interaction with and colocalization of the herpesvirus-associated ubiquitin-specific protease (HAUSP)-deubiquitinase with p53. It is also involved in trichostatin A-induced apoptosis and caspase 3 signaling in p53-deficient glioblastoma cells. In addition, tyrosine kinase Src can bind phosphorylate ING1 and further regulates its activity. ING1 contains an N-terminal leucine zipper-like (LZL) motif-containing ING domain, and a well-characterized C-terminal plant homeodomain (PHD)-type zinc-finger domain.


Pssm-ID: 341093  Cd Length: 88  Bit Score: 33.73  E-value: 3.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034656094  8 LEMIEQLPMDLRDRFTEMREMDLQVQNAMDQLEQRVSEFfmnAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIY 87
Cdd:cd16860    1 LDSIESLPFDLQRNVSLMREIDAKYQEILKELDEYYEKF---KRETDAVQKRRLLHCIQRALIRSQELGDEKIQIVSQMV 77

                 ..
gi 1034656094 88 DL 89
Cdd:cd16860   78 EL 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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