NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1034650606|ref|XP_016866457|]
View 

coiled-coil alpha-helical rod protein 1 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
HCR super family cl37559
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
27-773 0e+00

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


The actual alignment was detected with superfamily member pfam07111:

Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 990.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  27 MAPTWLSDIPLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRRLEE 106
Cdd:pfam07111   1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 107 EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAH 186
Cdd:pfam07111  81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 187 EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTW 266
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 267 ELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMV 346
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 347 QLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAE 426
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 427 EQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPV----TDVS 502
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdADLS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 503 LELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEE 582
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 583 AASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEAR 662
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 663 KEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDkKKSVVSSPRpPECSASAPVAAAVPTRESIKG 742
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD-KKSVVSSPR-PECSASAPIPAAVPTRESIKG 718
                         730       740       750
                  ....*....|....*....|....*....|.
gi 1034650606 743 SLSVLLDDLQDLSEAISKEEAVCQGDNLDRC 773
Cdd:pfam07111 719 SLTVLLDNLQGLSEAISREEAVCQEDNQDTC 749
 
Name Accession Description Interval E-value
HCR pfam07111
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
27-773 0e+00

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 990.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  27 MAPTWLSDIPLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRRLEE 106
Cdd:pfam07111   1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 107 EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAH 186
Cdd:pfam07111  81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 187 EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTW 266
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 267 ELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMV 346
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 347 QLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAE 426
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 427 EQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPV----TDVS 502
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdADLS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 503 LELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEE 582
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 583 AASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEAR 662
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 663 KEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDkKKSVVSSPRpPECSASAPVAAAVPTRESIKG 742
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD-KKSVVSSPR-PECSASAPIPAAVPTRESIKG 718
                         730       740       750
                  ....*....|....*....|....*....|.
gi 1034650606 743 SLSVLLDDLQDLSEAISKEEAVCQGDNLDRC 773
Cdd:pfam07111 719 SLTVLLDNLQGLSEAISREEAVCQEDNQDTC 749
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
87-679 2.50e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 96.54  E-value: 2.50e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  87 LSQQAEV--IVRQLQ-ELRRLEEEVRLLRETSLQQkmRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEG 163
Cdd:COG1196   205 LERQAEKaeRYRELKeELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 164 SQRELEEVQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 241
Cdd:COG1196   283 LEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 242 QVTLVENLRKYVGEQVpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQpsds 321
Cdd:COG1196   363 AEEALLEAEAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE---- 432
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 322 lepeftrkcqslLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 401
Cdd:COG1196   433 ------------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 402 KGLQLELSRAQEARRRWQQQTASAEEQLRlvvnavsssqIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 481
Cdd:COG1196   501 ADYEGFLEGVKAALLLAGLRGLAGAVAVL----------IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 482 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ----LSARLIQQEVGRAREQGEAE-RQQLSKVAQQLEQELQ 556
Cdd:COG1196   571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLReadaRYYVLGDTLLGRTLVAARLEaALRRAVTLAGRLREVT 650
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 557 QTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVS 636
Cdd:COG1196   651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*
gi 1034650606 637 LRQIQRRAAQEKERSQELRRLQEEARKEEGQR--LARRLQELERD 679
Cdd:COG1196   731 EAEREELLEELLEEEELLEEEALEELPEPPDLeeLERELERLERE 775
PTZ00121 PTZ00121
MAEBL; Provisional
94-712 3.38e-17

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 86.73  E-value: 3.38e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   94 IVRQLQELRRLEE-----EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ--- 165
Cdd:PTZ00121  1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaee 1247
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  166 -------RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKS---LSSLETRRAGEAKELAEAQREAELLRKQLSKT 235
Cdd:PTZ00121  1248 ernneeiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  236 QEDLEAQVTLVENLRKyVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRK 315
Cdd:PTZ00121  1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  316 VQPSDSLEPEfTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQlKGQVASLQEKVTSQSQEqAILQRSLQDKAAEVE 395
Cdd:PTZ00121  1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAK 1483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  396 VERMGAKGLQLELSRAQEARRRWQQQTASaeEQLRLVVNAVSSSQIWLETTMAKVEGAAAqlpSLNNRLSYAVRKVHTIR 475
Cdd:PTZ00121  1484 KADEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADELKKAEELK 1558
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  476 GLIARKLALAQLRQEScplpppvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQEL 555
Cdd:PTZ00121  1559 KAEEKKKAEEAKKAEE--------DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  556 QQTQESLASLGLQLEVARQGQQESTEEAASLRQEltqqqELYGQALQEKVAEVETRLREQlsdTERRLNEARREHAKAVV 635
Cdd:PTZ00121  1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA-----EEAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAK 1702
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  636 SLRQIQRRAAQEKERSQELRRLQEE---------ARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLP 706
Cdd:PTZ00121  1703 KAEELKKKEAEEKKKAEELKKAEEEnkikaeeakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782

                   ....*.
gi 1034650606  707 SLLDKK 712
Cdd:PTZ00121  1783 EELDEE 1788
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
88-701 2.18e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.77  E-value: 2.18e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   88 SQQAEVIVRQLQELRRLEEEVRLLRETSLQQKmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRE 167
Cdd:TIGR02168  209 AEKAERYKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  168 LEEVQRLHQEQ--LSSLTQAHEEALSSLTSKAEGLEKSLSSLETRR-------AGEAKELAEAQREAELLRKQLSKTQED 238
Cdd:TIGR02168  287 QKELYALANEIsrLEQQKQILRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAE 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  239 LEAQVTLVENLRKYVgEQVPSEVHSQTWEL-----ERQKLLETMQHLQEDRDSLHATAELL------------QVRVQSL 301
Cdd:TIGR02168  367 LEELESRLEELEEQL-ETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELlkkleeaelkelQAELEEL 445
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  302 THILALQEEELTRKVQPSDSLEPEFTRKCQSL------LNRWREKVFALmVQLKAQELEHSDSVKQLK-------GQVAS 368
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALdaaereLAQLQARLDSL-ERLQENLEGFSEGVKALLknqsglsGILGV 524
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  369 LQEKVTSQSQ-EQAI---LQRSLQ------DKAAEVEVERM-------------------GAKGLQLELSRAQEARRRWQ 419
Cdd:TIGR02168  525 LSELISVDEGyEAAIeaaLGGRLQavvvenLNAAKKAIAFLkqnelgrvtflpldsikgtEIQGNDREILKNIEGFLGVA 604
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  420 QQTASAEEQLRLVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIR--------------GLIARKLALA 485
Cdd:TIGR02168  605 KDLVKFDPKLRKALSYLLGGVLVVDD----LDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnsSILERRREIE 680
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  486 QLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLsARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASL 565
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  566 GLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAevetrLREQLSDTERRLNEARREHAKAVVSLRQIQRRAA 645
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-----LREALDELRAELTLLNEEAANLRERLESLERRIA 834
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034650606  646 QEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 701
Cdd:TIGR02168  835 ATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
 
Name Accession Description Interval E-value
HCR pfam07111
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
27-773 0e+00

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 990.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  27 MAPTWLSDIPLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRRLEE 106
Cdd:pfam07111   1 MAPTWASDIPLVQSPGHQDVLERRLDTQRPTVTMWEQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRLEE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 107 EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAH 186
Cdd:pfam07111  81 EVRLLRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAH 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 187 EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTW 266
Cdd:pfam07111 161 EEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGEQVPPEVHSQTW 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 267 ELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMV 346
Cdd:pfam07111 241 ELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 347 QLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAE 426
Cdd:pfam07111 321 QLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAE 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 427 EQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPV----TDVS 502
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALAQLRQESCPPPPPAppvdADLS 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 503 LELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEE 582
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEE 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 583 AASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEAR 662
Cdd:pfam07111 561 AASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEAR 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 663 KEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDkKKSVVSSPRpPECSASAPVAAAVPTRESIKG 742
Cdd:pfam07111 641 KEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLD-KKSVVSSPR-PECSASAPIPAAVPTRESIKG 718
                         730       740       750
                  ....*....|....*....|....*....|.
gi 1034650606 743 SLSVLLDDLQDLSEAISKEEAVCQGDNLDRC 773
Cdd:pfam07111 719 SLTVLLDNLQGLSEAISREEAVCQEDNQDTC 749
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
87-679 2.50e-20

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 96.54  E-value: 2.50e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  87 LSQQAEV--IVRQLQ-ELRRLEEEVRLLRETSLQQkmRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEG 163
Cdd:COG1196   205 LERQAEKaeRYRELKeELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 164 SQRELEEVQRLHQE--QLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 241
Cdd:COG1196   283 LEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 242 QVTLVENLRKYVGEQVpsevhsQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQpsds 321
Cdd:COG1196   363 AEEALLEAEAELAEAE------EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE---- 432
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 322 lepeftrkcqslLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 401
Cdd:COG1196   433 ------------LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 402 KGLQLELSRAQEARRRWQQQTASAEEQLRlvvnavsssqIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 481
Cdd:COG1196   501 ADYEGFLEGVKAALLLAGLRGLAGAVAVL----------IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 482 LALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ----LSARLIQQEVGRAREQGEAE-RQQLSKVAQQLEQELQ 556
Cdd:COG1196   571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLReadaRYYVLGDTLLGRTLVAARLEaALRRAVTLAGRLREVT 650
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 557 QTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVS 636
Cdd:COG1196   651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*
gi 1034650606 637 LRQIQRRAAQEKERSQELRRLQEEARKEEGQR--LARRLQELERD 679
Cdd:COG1196   731 EAEREELLEELLEEEELLEEEALEELPEPPDLeeLERELERLERE 775
PTZ00121 PTZ00121
MAEBL; Provisional
94-712 3.38e-17

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 86.73  E-value: 3.38e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   94 IVRQLQELRRLEE-----EVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ--- 165
Cdd:PTZ00121  1168 EARKAEDAKKAEAarkaeEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaee 1247
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  166 -------RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKS---LSSLETRRAGEAKELAEAQREAELLRKQLSKT 235
Cdd:PTZ00121  1248 ernneeiRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAdeaKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  236 QEDLEAQVTLVENLRKyVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRK 315
Cdd:PTZ00121  1328 KKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  316 VQPSDSLEPEfTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQlKGQVASLQEKVTSQSQEqAILQRSLQDKAAEVE 395
Cdd:PTZ00121  1407 ADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAK 1483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  396 VERMGAKGLQLELSRAQEARRRWQQQTASaeEQLRLVVNAVSSSQIWLETTMAKVEGAAAqlpSLNNRLSYAVRKVHTIR 475
Cdd:PTZ00121  1484 KADEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADELKKAEELK 1558
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  476 GLIARKLALAQLRQEScplpppvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQEL 555
Cdd:PTZ00121  1559 KAEEKKKAEEAKKAEE--------DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  556 QQTQESLASLGLQLEVARQGQQESTEEAASLRQEltqqqELYGQALQEKVAEVETRLREQlsdTERRLNEARREHAKAVV 635
Cdd:PTZ00121  1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA-----EEAKKAEEDKKKAEEAKKAEE---DEKKAAEALKKEAEEAK 1702
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  636 SLRQIQRRAAQEKERSQELRRLQEE---------ARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLP 706
Cdd:PTZ00121  1703 KAEELKKKEAEEKKKAEELKKAEEEnkikaeeakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782

                   ....*.
gi 1034650606  707 SLLDKK 712
Cdd:PTZ00121  1783 EELDEE 1788
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
85-659 1.88e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 80.75  E-value: 1.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  85 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE--- 161
Cdd:COG1196   239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEerl 318
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 162 ---EGSQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 238
Cdd:COG1196   319 eelEEELAELEEELEELEEELEEL----EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 239 LEAQVTLVENLRkyvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQp 318
Cdd:COG1196   395 AAELAAQLEELE----------------EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE- 457
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 319 sdslepeftrkcqsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVER 398
Cdd:COG1196   458 -------------------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 399 MGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPsLNNRLSYAVRKVHTIRGLI 478
Cdd:COG1196   519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP-LDKIRARAALAAALARGAI 597
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 479 ARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQT 558
Cdd:COG1196   598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 559 QESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLR 638
Cdd:COG1196   678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
                         570       580
                  ....*....|....*....|.
gi 1034650606 639 QIQRRAAQEKERSQELRRLQE 659
Cdd:COG1196   758 EPPDLEELERELERLEREIEA 778
PTZ00121 PTZ00121
MAEBL; Provisional
105-678 3.65e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 70.56  E-value: 3.65e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  105 EEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEaEGLRaalagAEVVRKnLEEGsqRELEEVQRLhqEQLSSLTQ 184
Cdd:PTZ00121  1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE-EARK-----AEDARK-AEEA--RKAEDAKRV--EIARKAED 1162
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  185 AHEEALSSLTSKAEGLEKSLSSLETRRAGEAKEL-----AEAQREAELLRK--QLSKTQEDLEAQ-VTLVENLRKYVGEQ 256
Cdd:PTZ00121  1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAedarkAEAARKAEEERKaeEARKAEDAKKAEaVKKAEEAKKDAEEA 1242
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  257 VPSEvHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL--EPEFTRKCQSLL 334
Cdd:PTZ00121  1243 KKAE-EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkKAEEAKKADEAK 1321
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  335 NRWRE-KVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQE 413
Cdd:PTZ00121  1322 KKAEEaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  414 ARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQ---- 489
Cdd:PTZ00121  1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKkaee 1481
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  490 -----ESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAER----------------QQLSKVA 548
Cdd:PTZ00121  1482 akkadEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeekkkadelkkaEELKKAE 1561
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  549 QQLEQELQQTQESLASLGL-QLEVARQGQQESTEEAASLR--------QELTQQQELYGQALQEKVAEVETRLREQLSDT 619
Cdd:PTZ00121  1562 EKKKAEEAKKAEEDKNMALrKAEEAKKAEEARIEEVMKLYeeekkmkaEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034650606  620 E----RRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRL-----ARRLQELER 678
Cdd:PTZ00121  1642 EaeekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeAKKAEELKK 1709
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
88-701 2.18e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.77  E-value: 2.18e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   88 SQQAEVIVRQLQELRRLEEEVRLLRETSLQQKmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRE 167
Cdd:TIGR02168  209 AEKAERYKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  168 LEEVQRLHQEQ--LSSLTQAHEEALSSLTSKAEGLEKSLSSLETRR-------AGEAKELAEAQREAELLRKQLSKTQED 238
Cdd:TIGR02168  287 QKELYALANEIsrLEQQKQILRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAE 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  239 LEAQVTLVENLRKYVgEQVPSEVHSQTWEL-----ERQKLLETMQHLQEDRDSLHATAELL------------QVRVQSL 301
Cdd:TIGR02168  367 LEELESRLEELEEQL-ETLRSKVAQLELQIaslnnEIERLEARLERLEDRRERLQQEIEELlkkleeaelkelQAELEEL 445
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  302 THILALQEEELTRKVQPSDSLEPEFTRKCQSL------LNRWREKVFALmVQLKAQELEHSDSVKQLK-------GQVAS 368
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALdaaereLAQLQARLDSL-ERLQENLEGFSEGVKALLknqsglsGILGV 524
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  369 LQEKVTSQSQ-EQAI---LQRSLQ------DKAAEVEVERM-------------------GAKGLQLELSRAQEARRRWQ 419
Cdd:TIGR02168  525 LSELISVDEGyEAAIeaaLGGRLQavvvenLNAAKKAIAFLkqnelgrvtflpldsikgtEIQGNDREILKNIEGFLGVA 604
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  420 QQTASAEEQLRLVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIR--------------GLIARKLALA 485
Cdd:TIGR02168  605 KDLVKFDPKLRKALSYLLGGVLVVDD----LDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnsSILERRREIE 680
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  486 QLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLsARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASL 565
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  566 GLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAevetrLREQLSDTERRLNEARREHAKAVVSLRQIQRRAA 645
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-----LREALDELRAELTLLNEEAANLRERLESLERRIA 834
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034650606  646 QEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRL 701
Cdd:TIGR02168  835 ATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
85-681 5.92e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 66.23  E-value: 5.92e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   85 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGS 164
Cdd:TIGR02168  337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  165 QRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 244
Cdd:TIGR02168  417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  245 LVENLRKYvGEQVPSEVHSQT------------------WELERQKLL-ETMQHLQEDRDS--LHATAELLQVRVQSLTH 303
Cdd:TIGR02168  497 LQENLEGF-SEGVKALLKNQSglsgilgvlselisvdegYEAAIEAALgGRLQAVVVENLNaaKKAIAFLKQNELGRVTF 575
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  304 ILALQEEEltRKVQPSDSLEPEFTRKCQSLLNRWRE------KVFALMVQL------------KAQELEHSDSVKQLKGQ 365
Cdd:TIGR02168  576 LPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKfdpklrKALSYLLGGvlvvddldnaleLAKKLRPGYRIVTLDGD 653
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  366 VASLQEKVT--SQSQEQAILQRSLQDKAAEVEVERMGAK--GLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQI 441
Cdd:TIGR02168  654 LVRPGGVITggSAKTNSSILERRREIEELEEKIEELEEKiaELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  442 WLETTMAKVEGAAAQLPSLN-NRLSYAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQ 520
Cdd:TIGR02168  734 DLARLEAEVEQLEERIAQLSkELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  521 -LSARLIQQEVGRAREQGEAER-----QQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQ 594
Cdd:TIGR02168  814 lLNEEAANLRERLESLERRIAAterrlEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  595 ELYgQALQEKVAEVETR---LREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLAR 671
Cdd:TIGR02168  894 SEL-EELSEELRELESKrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
                          650
                   ....*....|
gi 1034650606  672 RLQELERDKN 681
Cdd:TIGR02168  973 RLKRLENKIK 982
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
361-708 1.00e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.34  E-value: 1.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 361 QLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERMGAK--GLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSS 438
Cdd:COG1196   197 ELERQLEPLERQA-----EKAERYRELKEELKELEAELLLLKlrELEAELEELEAELEELEAELEELEAELAELEAELEE 271
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 439 SQIWLETTMAKVEGAAAQLPSLNNRLSyavRKVHTIRGLIARKLALAQLRQEscplpppvtdVSLELQQLREERNRLDAE 518
Cdd:COG1196   272 LRLELEELELELEEAQAEEYELLAELA---RLEQDIARLEERRRELEERLEE----------LEEELAELEEELEELEEE 338
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 519 LQlsarLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELyg 598
Cdd:COG1196   339 LE----ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL-- 412
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 599 QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELER 678
Cdd:COG1196   413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
                         330       340       350
                  ....*....|....*....|....*....|
gi 1034650606 679 DKNLMLATLQQEGLLSRYKQQRLLTVLPSL 708
Cdd:COG1196   493 LLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
PTZ00121 PTZ00121
MAEBL; Provisional
84-422 4.66e-10

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 63.62  E-value: 4.66e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   84 SQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEeg 163
Cdd:PTZ00121  1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE-- 1562
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  164 sQRELEEVQRLHQEQLSSLTQAH-----EEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 238
Cdd:PTZ00121  1563 -KKKAEEAKKAEEDKNMALRKAEeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  239 LEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRdslHATAELLQvrvqslthilalQEEELTRKVQP 318
Cdd:PTZ00121  1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE---KKAAEALK------------KEAEEAKKAEE 1706
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  319 SDSLEPEFTRKCQSLLNRWREKvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEqaiLQRSLQDKAAEVEVER 398
Cdd:PTZ00121  1707 LKKKEAEEKKKAEELKKAEEEN------KIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH---LKKEEEKKAEEIRKEK 1777
                          330       340
                   ....*....|....*....|....
gi 1034650606  399 MGAkgLQLELSRAQEARRRWQQQT 422
Cdd:PTZ00121  1778 EAV--IEEELDEEDEKRRMEVDKK 1799
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
82-629 1.99e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 1.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  82 EGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 161
Cdd:COG1196   302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 162 EGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEA 241
Cdd:COG1196   382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 242 QVTLVENLRKYvgeqvpsevhsqtwELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDS 321
Cdd:COG1196   462 LELLAELLEEA--------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 322 LEPEFTRKCQSLLNRwrekvfALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA 401
Cdd:COG1196   528 VLIGVEAAYEAALEA------ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 402 KGLQLELSRAQEARRRWQQQTASAeeqlRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARK 481
Cdd:COG1196   602 DLVASDLREADARYYVLGDTLLGR----TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 482 LALAQLRQEScplpppvtdVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQES 561
Cdd:COG1196   678 EAELEELAER---------LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034650606 562 LASLGLQLEVArqgqqESTEEAASLRQELTQQQELYG----QALQEkVAEVETR---LREQLSDterrLNEARRE 629
Cdd:COG1196   749 EEEALEELPEP-----PDLEELERELERLEREIEALGpvnlLAIEE-YEELEERydfLSEQRED----LEEARET 813
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
92-639 7.37e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.00  E-value: 7.37e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   92 EVIVRQLQELRRLEEEVRLLREtsLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgsqrELEEV 171
Cdd:COG4913    255 EPIRELAERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALRE----ELDEL 328
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  172 QRLHQ-------EQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 244
Cdd:COG4913    329 EAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA 408
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  245 LVENLRKYVGEQVpSEVHSQTWELERQKL-----LETM-----QHLQEDRDSLHATAELLQVRvqslthilalQEEE--- 311
Cdd:COG4913    409 EAEAALRDLRREL-RELEAEIASLERRKSniparLLALrdalaEALGLDEAELPFVGELIEVR----------PEEErwr 477
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  312 -----------LTRKVQPSDslEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSvkqlkgqvASLQEKVTSQSQE- 379
Cdd:COG4913    478 gaiervlggfaLTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDP--------DSLAGKLDFKPHPf 547
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  380 QAILQRSLQDKAAEVEVE-----RMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVsssqiwlettmAKVEGAA 454
Cdd:COG4913    548 RAWLEAELGRRFDYVCVDspeelRRHPRAITRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNR-----------AKLAALE 616
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  455 AQLPSLNNRLSYA---VRKVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLiQQEVG 531
Cdd:COG4913    617 AELAELEEELAEAeerLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAAL-EEQLE 695
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  532 RAREQGEAERQQLSKVaqqleqelqqtQESLASLGLQLEVARQGQQESTE--EAASLRQELTQQQELYGQALQEKVAEVE 609
Cdd:COG4913    696 ELEAELEELEEELDEL-----------KGEIGRLEKELEQAEEELDELQDrlEAAEDLARLELRALLEERFAAALGDAVE 764
                          570       580       590
                   ....*....|....*....|....*....|
gi 1034650606  610 TRLREQLSDTERRLNEARREHAKAVVSLRQ 639
Cdd:COG4913    765 RELRENLEERIDALRARLNRAEEELERAMR 794
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
85-677 2.40e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.45  E-value: 2.40e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   85 QALSQQAEVIVRQLQELR--RLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVR----K 158
Cdd:COG4913    265 AAARERLAELEYLRAALRlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRleqlE 344
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  159 NLEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSltskAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQED 238
Cdd:COG4913    345 REIERLERELEERERRRARLEALLAALGLPLPAS----AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  239 LEAQVTLVENLRKyVGEQVPSEVHsqtwelERQKLLEtmQHLQEDRDSLHATAELLQVR---------VQSLTHILAL-- 307
Cdd:COG4913    421 LRELEAEIASLER-RKSNIPARLL------ALRDALA--EALGLDEAELPFVGELIEVRpeeerwrgaIERVLGGFALtl 491
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  308 -----QEEELTR--------------KVQPSDSLEPEFTRKCQSLLNR--WREKVFALMVQlkaQELEHS------DSVK 360
Cdd:COG4913    492 lvppeHYAAALRwvnrlhlrgrlvyeRVRTGLPDPERPRLDPDSLAGKldFKPHPFRAWLE---AELGRRfdyvcvDSPE 568
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  361 QLK---------GQV---ASLQEK-VTSQSQEQAILQRSLQDKAAEVEVERmgaKGLQLELSRAQEARRRWQQQTASAEE 427
Cdd:COG4913    569 ELRrhpraitraGQVkgnGTRHEKdDRRRIRSRYVLGFDNRAKLAALEAEL---AELEEELAEAEERLEALEAELDALQE 645
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  428 QLRL--VVNAVSSSQIwlettmaKVEGAAAQLPSLNNRLsyavrkvhtiRGLIARKLALAQLRQEscplpppVTDVSLEL 505
Cdd:COG4913    646 RREAlqRLAEYSWDEI-------DVASAEREIAELEAEL----------ERLDASSDDLAALEEQ-------LEELEAEL 701
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  506 QQLREERNRLDAElqlsARLIQQEVGRAREQGEAERQQLSKVAqqleqelqqtqeSLASLGLQLEVARQGQQESTEEA-A 584
Cdd:COG4913    702 EELEEELDELKGE----IGRLEKELEQAEEELDELQDRLEAAE------------DLARLELRALLEERFAAALGDAVeR 765
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  585 SLRQELTQQQElygqALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRaaqekersqeLRRLQEEARKE 664
Cdd:COG4913    766 ELRENLEERID----ALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL----------LDRLEEDGLPE 831
                          650
                   ....*....|...
gi 1034650606  665 EGQRLARRLQELE 677
Cdd:COG4913    832 YEERFKELLNENS 844
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
93-702 5.50e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.07  E-value: 5.50e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   93 VIVRQLQELRRLEEEvrllRETSLQ-QKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRknleEGSQRELEEV 171
Cdd:TIGR02169  192 IIDEKRQQLERLRRE----REKAERyQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL----EKLTEEISEL 263
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  172 QRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRK 251
Cdd:TIGR02169  264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  252 YVGEqvpsevhsqtWELERQKLLETMQHLQEDRdslhataELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRkcq 331
Cdd:TIGR02169  344 EIEE----------ERKRRDKLTEEYAELKEEL-------EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE--- 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  332 slLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRA 411
Cdd:TIGR02169  404 --LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  412 QEARRRWQQQTASAEEQLRLVVNAVSSS---QIWLETTMAKVEGAAAQLPS------------LNNRLSYAVRK-----V 471
Cdd:TIGR02169  482 EKELSKLQRELAEAEAQARASEERVRGGravEEVLKASIQGVHGTVAQLGSvgeryataievaAGNRLNNVVVEddavaK 561
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  472 HTIRGLIARK------LALAQLRQESCPLPPP----VTDVSLELQQLREER--------------NRLDA--ELQLSARL 525
Cdd:TIGR02169  562 EAIELLKRRKagratfLPLNKMRDERRDLSILsedgVIGFAVDLVEFDPKYepafkyvfgdtlvvEDIEAarRLMGKYRM 641
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  526 IQQ-----EVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYG-- 598
Cdd:TIGR02169  642 VTLegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGei 721
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  599 -------QALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKE---------RSQELRRLQEEAR 662
Cdd:TIGR02169  722 ekeieqlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEalndlearlSHSRIPEIQAELS 801
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|..
gi 1034650606  663 K--EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLL 702
Cdd:TIGR02169  802 KleEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
86-699 7.33e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.53  E-value: 7.33e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   86 ALSQQAEVIVRQLQELRRLEEEVRLLREtslqQKMRLEaqamELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEegsQ 165
Cdd:COG4913    222 DTFEAADALVEHFDDLERAHEALEDARE----QIELLE----PIRELAERYAAARERLAELEYLRAALRLWFAQRR---L 290
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  166 RELEEVQRLHQEQLssltQAHEEALSSLTSKAEGLEKSLSSLETRRAG-EAKELAEAQREAELLRKQLSKTQEDLEAQVT 244
Cdd:COG4913    291 ELLEAELEELRAEL----ARLEAELERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEA 366
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  245 LVENLrkyvGEQVPSEvhSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRkVQPSDSLEP 324
Cdd:COG4913    367 LLAAL----GLPLPAS--AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS-LERRKSNIP 439
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  325 EFTRKCQSLLNR---WRE---KVFALMVQLKAQELEHSDSV-KQLKGQVASLqekvtsqsqeqaILQRSLQDKAAEVeVE 397
Cdd:COG4913    440 ARLLALRDALAEalgLDEaelPFVGELIEVRPEEERWRGAIeRVLGGFALTL------------LVPPEHYAAALRW-VN 506
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  398 RMGAKGlQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAA-----AQLpslnNRLSYAVrkvh 472
Cdd:COG4913    507 RLHLRG-RLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRFDYVcvdspEEL----RRHPRAI---- 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  473 TIRGLIARKLALAQLRQESCPLPPPVT--DVSLELQQLREERNRLDAELqlsarliqQEVGRAREQGEAERQQLSKVAQQ 550
Cdd:COG4913    578 TRAGQVKGNGTRHEKDDRRRIRSRYVLgfDNRAKLAALEAELAELEEEL--------AEAEERLEALEAELDALQERREA 649
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  551 LEQELQQTQESLASLGLQLEVARQGQQ-ESTEEAASLRQELTQQQElygqALQEKVAEVETRLREqLSDTERRLNEARRE 629
Cdd:COG4913    650 LQRLAEYSWDEIDVASAEREIAELEAElERLDASSDDLAALEEQLE----ELEAELEELEEELDE-LKGEIGRLEKELEQ 724
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034650606  630 HAKAVVSLRQIQRRAAQEKERSQELR---RLQEEARKEEGQRLARRLQELERDKNLMLATLQQ--EGLLSRYKQQ 699
Cdd:COG4913    725 AEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAVERELRENLEERIDALRARLNRAEEelERAMRAFNRE 799
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
82-325 1.59e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.53  E-value: 1.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   82 EGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE 161
Cdd:TIGR02169  706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  162 --------EGSQRELEEVQRLHQEQLSSLtQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLS 233
Cdd:TIGR02169  786 arlshsriPEIQAELSKLEEEVSRIEARL-REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  234 KTQEDLEAQVTLVENLRKYVGEqvpsevhsqtWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELT 313
Cdd:TIGR02169  865 ELEEELEELEAALRDLESRLGD----------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934
                          250
                   ....*....|..
gi 1034650606  314 RKVQPSDSLEPE 325
Cdd:TIGR02169  935 EIEDPKGEDEEI 946
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
413-690 2.08e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 2.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  413 EARRRWQ--QQTASAEEQLRLVVNAVSSSQIWLETtmAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQ 489
Cdd:TIGR02168  197 ELERQLKslERQAEKAERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEkLEELRL 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  490 ESCPLPPPVTDVSLELQQLREERNRLDAELQ-LSARLIQ-----QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLA 563
Cdd:TIGR02168  275 EVSELEEEIEELQKELYALANEISRLEQQKQiLRERLANlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  564 SLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVET--RLREQLSDTERRLNEARREHAKAVVSLRQIQ 641
Cdd:TIGR02168  355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEieRLEARLERLEDRRERLQQEIEELLKKLEEAE 434
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1034650606  642 RRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQE 690
Cdd:TIGR02168  435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
357-664 2.11e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 2.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  357 DSVKQLKGQVASLQEKVtsqsqEQAILQRSLQDKAAEVEVERmgakgLQLELSRAQEARRRWQQQTASAEEQLRLVVNAV 436
Cdd:TIGR02168  193 DILNELERQLKSLERQA-----EKAERYKELKAELRELELAL-----LVLRLEELREELEELQEELKEAEEELEELTAEL 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  437 SSSQIWLETTMA-------KVEGAAAQLPSLNNRLS--------YAVRKVHTIRGLIARKLALAQLRQESCPLPPPVTDV 501
Cdd:TIGR02168  263 QELEEKLEELRLevseleeEIEELQKELYALANEISrleqqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  502 SLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQEsLASLGLQLEVARQGQQESTE 581
Cdd:TIGR02168  343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQ 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  582 EAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEA 661
Cdd:TIGR02168  422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501

                   ...
gi 1034650606  662 RKE 664
Cdd:TIGR02168  502 EGF 504
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
89-700 3.09e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.76  E-value: 3.09e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   89 QQAEVIVRQLQ-ELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLE---EGS 164
Cdd:TIGR02169  318 EDAEERLAKLEaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYReklEKL 397
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  165 QRELEEVQRLHQEQLSSLTQAHEEaLSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAqvt 244
Cdd:TIGR02169  398 KREINELKRELDRLQEELQRLSEE-LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD--- 473
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  245 LVENLRKYVGEQvpSEVHSQTWELE-RQKLLETMQH--------LQEDRDSLHAT-AELLQVRVQSLTHILALQEEELTR 314
Cdd:TIGR02169  474 LKEEYDRVEKEL--SKLQRELAEAEaQARASEERVRggraveevLKASIQGVHGTvAQLGSVGERYATAIEVAAGNRLNN 551
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  315 KVQPSDSLepefTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKaaeV 394
Cdd:TIGR02169  552 VVVEDDAV----AKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDT---L 624
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  395 EVERMGAKGLQLELSR----AQEARRRWQQQTASAEEQLRLVVNAVSSSqiwlettmAKVEGAAAQLPSLNNRLSYAVRK 470
Cdd:TIGR02169  625 VVEDIEAARRLMGKYRmvtlEGELFEKSGAMTGGSRAPRGGILFSRSEP--------AELQRLRERLEGLKRELSSLQSE 696
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  471 VHTIRGLIARKLALAQLRQEScplpppVTDVSLELQQLREERNRLDAELQLSARLIQqEVGRAREQGEAERQQLSKVAQQ 550
Cdd:TIGR02169  697 LRRIENRLDELSQELSDASRK------IGEIEKEIEQLEQEEEKLKERLEELEEDLS-SLEQEIENVKSELKELEARIEE 769
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  551 LEQELQQTQESLASLglqlevarqgqqesteeAASLRQELTQQQelygQALQEKVAEVETRLREQLSDTERRLNEARREh 630
Cdd:TIGR02169  770 LEEDLHKLEEALNDL-----------------EARLSHSRIPEI----QAELSKLEEEVSRIEARLREIEQKLNRLTLE- 827
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034650606  631 akavvslRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERD-KNLMLATLQQEGLLSRYKQQR 700
Cdd:TIGR02169  828 -------KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEElEELEAALRDLESRLGDLKKER 891
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
152-699 1.01e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 1.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  152 GAEVVRKNLEEGSQrELEEVQRlhqeQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQ 231
Cdd:pfam15921   72 GKEHIERVLEEYSH-QVKDLQR----RLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ 146
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  232 LSKTQEDLEAQVTLVENLRKYVGEQVpsevhsqtwELERQKLLETMQHLQEDRDslhataellqvrvqslthILALQEEE 311
Cdd:pfam15921  147 LQNTVHELEAAKCLKEDMLEDSNTQI---------EQLRKMMLSHEGVLQEIRS------------------ILVDFEEA 199
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  312 LTRKVQPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQvaslqekvtSQSQEQAILQRSlQDKA 391
Cdd:pfam15921  200 SGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE---------SQNKIELLLQQH-QDRI 269
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  392 AEVEVERmgakglQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPS--LNNRLSYAVR 469
Cdd:pfam15921  270 EQLISEH------EVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAKRMYEDK 343
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  470 KVHTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQL----SARLIQQEVGRAREQGEAERQQLS 545
Cdd:pfam15921  344 IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeqNKRLWDRDTGNSITIDHLRRELDD 423
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  546 KVAQQLEQELQQTQESLASLGlQLE---VARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQ--LSDTE 620
Cdd:pfam15921  424 RNMEVQRLEALLKAMKSECQG-QMErqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtVSDLT 502
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034650606  621 RRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQ 699
Cdd:pfam15921  503 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQH 581
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
98-625 1.21e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 45.80  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  98 LQELRRLEEEVRLLRETslqqkmrLEAQAMELEALARAEKAGRAEAEGLRAALAGAeVVRKNLEEGSQRELEEVQRLHQE 177
Cdd:PRK02224  250 REELETLEAEIEDLRET-------IAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREELED 321
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 178 QLSSLTQAHEE---ALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVG 254
Cdd:PRK02224  322 RDEELRDRLEEcrvAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 255 EqvpSEVHSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLThilALQEE----ELTRKVQPSDSLEPEFTRKC 330
Cdd:PRK02224  402 D---APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE---ALLEAgkcpECGQPVEGSPHVETIEEDRE 475
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 331 QsllnrwREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRsLQDKAAEVEVERMGAKGLQlelSR 410
Cdd:PRK02224  476 R------VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKRERAEELR---ER 545
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 411 AQEARRRWQQQTASAEEQlRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQE 490
Cdd:PRK02224  546 AAELEAEAEEKREAAAEA-EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDE 624
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 491 ScplpppvtdvSLELQQLREERNRLDAELQLSArliqqeVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGlqle 570
Cdd:PRK02224  625 R----------RERLAEKRERKRELEAEFDEAR------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG---- 684
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034650606 571 varqGQQESTEEAASLRQELTQQQE-------LYGQA--LQEKVAEVETRLREQLSDT-ERRLNE 625
Cdd:PRK02224  685 ----AVENELEELEELRERREALENrvealeaLYDEAeeLESMYGDLRAELRQRNVETlERMLNE 745
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
166-703 1.68e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 45.34  E-value: 1.68e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  166 RELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQE--DLEAQV 243
Cdd:TIGR00618  190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLRARI 269
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  244 TLVENLRKYVGEQVPSEVHSQTWElerqKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 323
Cdd:TIGR00618  270 EELRAQEAVLEETQERINRARKAA----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  324 PEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRslqdKAAEVEVERMGAKG 403
Cdd:TIGR00618  346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR----EQATIDTRTSAFRD 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  404 LQLELSRAQearrrwqqqtasAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQ-LPSLNNRLSYAVRKVHTIRGLIARKL 482
Cdd:TIGR00618  422 LQGQLAHAK------------KQQELQQRYAELCAAAITCTAQCEKLEKIHLQeSAQSLKEREQQLQTKEQIHLQETRKK 489
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  483 AL-AQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQ--QEVGRAREQGEAERQQLSKVAQQLEQELQQTQ 559
Cdd:TIGR00618  490 AVvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQtyAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  560 ESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVEtRLREQLSDTERRLNEAR--REHAKAVVSL 637
Cdd:TIGR00618  570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR-KLQPEQDLQDVRLHLQQcsQELALKLTAL 648
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034650606  638 RQIQRRAAQEKERSQELRRLQEEARK-EEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLT 703
Cdd:TIGR00618  649 HALQLTLTQERVREHALSIRVLPKELlASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
269-625 2.57e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 2.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  269 ERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRkcqslLNRWREKVFALMVQL 348
Cdd:TIGR02168  699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  349 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQ 428
Cdd:TIGR02168  774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  429 LRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSyavrkvhtirgliARKLALAQLRQESCPLPPPVTDVSLELQQL 508
Cdd:TIGR02168  854 IESLAAEIEELEELIEELESELEALLNERASLEEALA-------------LLRSELEELSEELRELESKRSELRRELEEL 920
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  509 REERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASL-- 586
Cdd:TIGR02168  921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELke 1000
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1034650606  587 -RQELTQQQELYGQA---LQEKVAEVETRLREQLSDTERRLNE 625
Cdd:TIGR02168 1001 rYDFLTAQKEDLTEAketLEEAIEEIDREARERFKDTFDQVNE 1043
PTZ00121 PTZ00121
MAEBL; Provisional
183-723 5.74e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 5.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  183 TQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQlsktqedleAQVTLVENLRKyvGEQVPSEVH 262
Cdd:PTZ00121  1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA---------EEARKAEDARK--AEEARKAED 1150
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  263 SQTWELERQklLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEftRKCQSLLNRWREKVF 342
Cdd:PTZ00121  1151 AKRVEIARK--AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE--RKAEEARKAEDAKKA 1226
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  343 -----ALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQL----------E 407
Cdd:PTZ00121  1227 eavkkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaeekkkadE 1306
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  408 LSRAQEARRRWQQQTASAEEQLRLVVNAVSSSqiwlETTMAKVEGAAAQLPSLNNRLSYAVRKVHtirgliARKLALAQL 487
Cdd:PTZ00121  1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKA----EEAKKAAEAAKAEAEAAADEAEAAEEKAE------AAEKKKEEA 1376
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  488 RQESCPLPPPVTDV--SLELQQLREERNRLDAELQLSARLiQQEVGRAREQGEAERQ--QLSKVAQQLEQELQQTQESLA 563
Cdd:PTZ00121  1377 KKKADAAKKKAEEKkkADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEE 1455
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  564 SLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQL---SDTERRLNEARR--EHAKAVVSLR 638
Cdd:PTZ00121  1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkkkADEAKKAEEAKKadEAKKAEEAKK 1535
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  639 QIQRRAAQEKERSQELRRlQEEARKEEGQRLARRLQELERDKNLmlaTLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVSS 718
Cdd:PTZ00121  1536 ADEAKKAEEKKKADELKK-AEELKKAEEKKKAEEAKKAEEDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611

                   ....*
gi 1034650606  719 PRPPE 723
Cdd:PTZ00121  1612 AKKAE 1616
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
85-243 6.23e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 43.40  E-value: 6.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   85 QALSQQAEVIVRQLQELRRLEEE----VRLLRETSLQQKMRLEAQAMELEALARAEkagrAEAEGLRAALAGAEVVRKNL 160
Cdd:COG3096    508 QALAQRLQQLRAQLAELEQRLRQqqnaERLLEEFCQRIGQQLDAAEELEELLAELE----AQLEELEEQAAEAVEQRSEL 583
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  161 eegsQRELEEVQRLHQEqLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAkELAEAQREAELLRKQLSKTQEDLE 240
Cdd:COG3096    584 ----RQQLEQLRARIKE-LAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALE 657

                   ...
gi 1034650606  241 AQV 243
Cdd:COG3096    658 SQI 660
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
190-701 7.33e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.83  E-value: 7.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 190 LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVgEQVPSEVHSQTWELE 269
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-EELREELEKLEKLLQ 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 270 RQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHiLALQEEELTRKVQpsdslepeftrkcqsllnRWREKVFALMVQLK 349
Cdd:COG4717   127 LLPLYQELEALEAELAELPERLEELEERLEELRE-LEEELEELEAELA------------------ELQEELEELLEQLS 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 350 AQELEHsdsVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEvermgakGLQLELSRAQEARRRWQQQTASAEEQL 429
Cdd:COG4717   188 LATEEE---LQDLAEELEELQQRLAELEEELEEAQEELEELEEELE-------QLENELEAAALEERLKEARLLLLIAAA 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 430 RLVVNAVSSSQIWLETTMAKVEGAAAQLPSLnnRLSYAVRKVHTIRGLIARKLALAQLRqescplpppvtdvSLELQQLR 509
Cdd:COG4717   258 LLALLGLGGSLLSLILTIAGVLFLVLGLLAL--LFLLLAREKASLGKEAEELQALPALE-------------ELEEEELE 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 510 EERNRLDAELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQELQQTQESL-ASLGLQLEVARQGQQESTEEAASLRQ 588
Cdd:COG4717   323 ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKE 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 589 ELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEeaRKEEGQR 668
Cdd:COG4717   403 ELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE--LLQELEE 480
                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 1034650606 669 LARRLQELERD---KNLMLATLQQegLLSRYKQQRL 701
Cdd:COG4717   481 LKAELRELAEEwaaLKLALELLEE--AREEYREERL 514
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
100-273 1.07e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.74  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 100 ELRRLEEEVRLLREtslqQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQ------RELEEVQR 173
Cdd:PRK03918  215 ELPELREELEKLEK----EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleekvKELKELKE 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 174 LHQE---------QLSSLTQAHEEALSSLTSKAEGLEKSLSSLET--RRAGE-AKELAEAQREAELLRKQLsKTQEDLEA 241
Cdd:PRK03918  291 KAEEyiklsefyeEYLDELREIEKRLSRLEEEINGIEERIKELEEkeERLEElKKKLKELEKRLEELEERH-ELYEEAKA 369
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1034650606 242 QVTLVENLRKYVGEQVPSEVHSQTWELERQKL 273
Cdd:PRK03918  370 KKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
EmrA COG1566
Multidrug resistance efflux pump EmrA [Defense mechanisms];
108-259 1.27e-03

Multidrug resistance efflux pump EmrA [Defense mechanisms];


Pssm-ID: 441174 [Multi-domain]  Cd Length: 331  Bit Score: 41.57  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 108 VRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEgSQRELEEVQRLHQEQLSSLTQAhE 187
Cdd:COG1566    74 ARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAEAQLAAAQAQLDL-AQRELERYQALYKKGAVSQQEL-D 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 188 EALSSLTSKAEGLEKSLSSLETRRAG--EAKELAEAQREAELLRKQLSKTQEDLE-AQVT-----LVENLRKYVGEQVPS 259
Cdd:COG1566   152 EARAALDAAQAQLEAAQAQLAQAQAGlrEEEELAAAQAQVAQAEAALAQAELNLArTTIRapvdgVVTNLNVEPGEVVSA 231
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
184-717 1.42e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.13  E-value: 1.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  184 QAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVtlveNLRKYVGEQVPSEVHS 263
Cdd:pfam12128  247 QQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL----NGELSAADAAVAKDRS 322
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  264 QTWELERQKLletmQHLQEDRDSLHATAELL---QVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREK 340
Cdd:pfam12128  323 ELEALEDQHG----AFLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDK 398
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  341 vfaLMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQdkaaevevermgakglqlelSRAQEARRRWQQ 420
Cdd:pfam12128  399 ---LAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLK--------------------SRLGELKLRLNQ 455
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  421 QTASAEE--QLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTI-RGLIARKLALAQLRQescplppp 497
Cdd:pfam12128  456 ATATPELllQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsRRLEERQSALDELEL-------- 527
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  498 vtdvslelqQLREERNRLDAELQLSARLIQQEVGRAreqgeAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQ 577
Cdd:pfam12128  528 ---------QLFPQAGTLLHFLRKEAPDWEQSIGKV-----ISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVP 593
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  578 ESTEEAASLRQELTQQQELYgQALQEKVAEVETRL---REQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQEL 654
Cdd:pfam12128  594 EWAASEEELRERLDKAEEAL-QSAREKQAAAEEQLvqaNGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKA 672
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034650606  655 RRLQEEARKEEGQRLARRLQELERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVS 717
Cdd:pfam12128  673 LAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
85-705 1.76e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 41.88  E-value: 1.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   85 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKagRAEAEGLRAALAGAEVVRKNLEEGS 164
Cdd:pfam02463  213 YQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE--KLAQVLKENKEEEKEKKLQEEELKL 290
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  165 QRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVT 244
Cdd:pfam02463  291 LAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ 370
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  245 LVENLRKYVGE--QVPSEVHSQTWELERQKLLET------MQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKV 316
Cdd:pfam02463  371 LEEELLAKKKLesERLSSAAKLKEEELELKSEEEkeaqllLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  317 QPSDSLEPEFTRKCQSLLNRWREKVFALMVQLKAQELEHSDSVKQ-------------------LKGQVASLQEKVTSQS 377
Cdd:pfam02463  451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeersqkeskarsglkvllaLIKDGVGGRIISAHGR 530
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  378 QEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQL 457
Cdd:pfam02463  531 LGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDK 610
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  458 PSLNNRLSYAVRKV-------HTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEv 530
Cdd:pfam02463  611 ATLEADEDDKRAKVvegilkdTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESEL- 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  531 grarEQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVET 610
Cdd:pfam02463  690 ----AKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  611 RLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKNLMLATLQQE 690
Cdd:pfam02463  766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
                          650
                   ....*....|....*
gi 1034650606  691 GLLSRYKQQRLLTVL 705
Cdd:pfam02463  846 QKLEKLAEEELERLE 860
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
76-257 1.79e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 41.74  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  76 GRSWGLEGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALaraekagRAEAEGLRaalagaev 155
Cdd:PRK00409  486 GKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEAL-------LKEAEKLK-------- 550
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 156 vrKNLEEgsqrELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLE--TRRAGEAKELAEAQREaelLRKQLS 233
Cdd:PRK00409  551 --EELEE----KKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQkgGYASVKAHELIEARKR---LNKANE 621
                         170       180
                  ....*....|....*....|....
gi 1034650606 234 KTQEDLEAQVTLVENLRkyVGEQV 257
Cdd:PRK00409  622 KKEKKKKKQKEKQEELK--VGDEV 643
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
85-395 2.04e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.59  E-value: 2.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   85 QALSQQAEVIVRQLQELRRLEEEVRLLREtslQQKMRLEAQAMELEALA-RAEKAGRAEAEGLRAALAGAEVVRKNLEeG 163
Cdd:TIGR02169  233 EALERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLE-R 308
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  164 SQRELEEVQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLsktqEDLEAQv 243
Cdd:TIGR02169  309 SIAEKERELEDAEERLAKL----EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL----EEVDKE- 379
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  244 tlvenlrkyvgeqvpsevhSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLE 323
Cdd:TIGR02169  380 -------------------FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034650606  324 PEFTrkcqsllnrwrekvfALMVQLKAQELEhsdsVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVE 395
Cdd:TIGR02169  441 EEKE---------------DKALEIKKQEWK----LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
419-651 2.56e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 419 QQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIRGLIARKLA-LAQLRQEscplppp 497
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAeLAELEKE------- 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 498 VTDVSLELQQLREERNRLDAELQLSARLIQQEVG-RAREQGEAER--QQLSKVAQQLEQELQQTQESLAslglQLEVARQ 574
Cdd:COG4942    92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLlSPEDFLDAVRrlQYLKYLAPARREQAEELRADLA----ELAALRA 167
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034650606 575 GQQESTEEAASLRQELTQQQELYGQALQEKvAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERS 651
Cdd:COG4942   168 ELEAERAELEALLAELEEERAALEALKAER-QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
504-701 3.40e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.77  E-value: 3.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 504 ELQQLREERNRLDAELQLSARLIQ-QEVGRAREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTee 582
Cdd:COG3206   197 ALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAE-- 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 583 aasLRQELTQQQELYG------QALQEKVAEVETRLREQLsdtERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRR 656
Cdd:COG3206   275 ---LEAELAELSARYTpnhpdvIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQLAQLEARLAELPE 348
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1034650606 657 LQeearkeegqrlaRRLQELERDKNLMLATLQQegLLSRYKQQRL 701
Cdd:COG3206   349 LE------------AELRRLEREVEVARELYES--LLQRLEEARL 379
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
85-251 4.16e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.13  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  85 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARA-EKAGRAE-------AEGLRAALAGAEVV 156
Cdd:COG4942    62 RRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAlYRLGRQPplalllsPEDFLDAVRRLQYL 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 157 RKNLEEgsQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQ 236
Cdd:COG4942   142 KYLAPA--RREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
                         170
                  ....*....|....*
gi 1034650606 237 EDLEAQVTLVENLRK 251
Cdd:COG4942   220 QEAEELEALIARLEA 234
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
268-535 4.78e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 4.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  268 LERQKLLETMQHLQEDRDSL---HATAELLQVRVQSLTHILALQEEELTRKVQPSDslepefTRKCQSLLNRWREkvfAL 344
Cdd:COG4913    218 LEEPDTFEAADALVEHFDDLeraHEALEDAREQIELLEPIRELAERYAAARERLAE------LEYLRAALRLWFA---QR 288
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  345 MVQLKAQELEhsdsvkQLKGQVASLQEKVTSQSQEQAILQRSLQdkaaEVEVERMGAKG-----LQLELSRAQEARRRWQ 419
Cdd:COG4913    289 RLELLEAELE------ELRAELARLEAELERLEARLDALREELD----ELEAQIRGNGGdrleqLEREIERLERELEERE 358
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  420 QQTASAEEQLR-LVVNAVSSSQIWLETtmakVEGAAAQLPSLNNRLSYAVRKVHTIRGliarklALAQLRQEscplpppV 498
Cdd:COG4913    359 RRRARLEALLAaLGLPLPASAEEFAAL----RAEAAALLEALEEELEALEEALAEAEA------ALRDLRRE-------L 421
                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1034650606  499 TDVSLELQQLREERNRLDAELQLSARLIQQEVGRARE 535
Cdd:COG4913    422 RELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
494-690 5.08e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.13  E-value: 5.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 494 LPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEvgrareqgEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVAR 573
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAAL--------KKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 574 QGQQESTEEAASLRQELTQQQELYGQAL-----QEKVAEVETRLR-EQLSDTERRL------NEARREHAKAVVS-LRQI 640
Cdd:COG4942    83 AELAELEKEIAELRAELEAQKEELAELLralyrLGRQPPLALLLSpEDFLDAVRRLqylkylAPARREQAEELRAdLAEL 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1034650606 641 QRRAAQEKERSQELRRLQEEARKEEgqrlaRRLQELERDKNLMLATLQQE 690
Cdd:COG4942   163 AALRAELEAERAELEALLAELEEER-----AALEALKAERQKLLARLEKE 207
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
160-688 5.88e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 40.10  E-value: 5.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  160 LEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETrrageakELAEAQREAELLRKQLSKTQEDL 239
Cdd:pfam15921  250 LKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS-------QLEIIQEQARNQNSMYMRQLSDL 322
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  240 EAQVTLVENLRKYVGEQVPSEVHsqtwELERQKLLET--MQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQ 317
Cdd:pfam15921  323 ESTVSQLRSELREAKRMYEDKIE----ELEKQLVLANseLTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  318 PSDSLEPEFTRKCQSLLNRWRE------KVFALMVQLKAQElehSDSVKQLKGQVASLQ------EKVTSQSQEQAILQR 385
Cdd:pfam15921  399 QNKRLWDRDTGNSITIDHLRRElddrnmEVQRLEALLKAMK---SECQGQMERQMAAIQgkneslEKVSSLTAQLESTKE 475
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  386 SLQDKAAEVEVERMGAKGLQL---ELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNN 462
Cdd:pfam15921  476 MLRKVVEELTAKKMTLESSERtvsDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKL 555
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  463 RLSYAVRKVHTIRGLIARKLAL--------AQLRQESCPLPPPVTDVSLELQQLREERNRLDAEL-QLSARLIQQEVgra 533
Cdd:pfam15921  556 QMAEKDKVIEILRQQIENMTQLvgqhgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIrELEARVSDLEL--- 632
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  534 reqgeaERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQEL---TQQQELYGQALQEKVAEVET 610
Cdd:pfam15921  633 ------EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFrnkSEEMETTTNKLKMQLKSAQS 706
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  611 RLrEQLSDTERRLNEARREHAKAVVSL-RQIQRRAAQEKERSQELRRLQEEAR---------KEEGQRLARRLQELERDK 680
Cdd:pfam15921  707 EL-EQTRNTLKSMEGSDGHAMKVAMGMqKQITAKRGQIDALQSKIQFLEEAMTnankekhflKEEKNKLSQELSTVATEK 785

                   ....*...
gi 1034650606  681 NLMLATLQ 688
Cdd:pfam15921  786 NKMAGELE 793
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
85-664 6.19e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 40.34  E-value: 6.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606   85 QALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELE-ALARAEKAGRAEAEGLRAALAGAEVVRKNLEEG 163
Cdd:TIGR00618  233 EALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVlEETQERINRARKAAPLAAHIKAVTQIEQQAQRI 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  164 SQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQV 243
Cdd:TIGR00618  313 HTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLT 392
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  244 TLvENLRKYVGEQVPSEVHSQTWELERQKLLE-TMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSL 322
Cdd:TIGR00618  393 QK-LQSLCKELDILQREQATIDTRTSAFRDLQgQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  323 EPEFTRKCQSLLNRWREKVFALMVQLKAQELE--------HSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEV 394
Cdd:TIGR00618  472 EQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgsciHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQL 551
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  395 EVERMGAKGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLEttmaKVEGAAAQLPSLNNRLsyaVRKVHTI 474
Cdd:TIGR00618  552 TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE----KLSEAEDMLACEQHAL---LRKLQPE 624
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  475 RGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREErnrldaELQLSARLIQQEVGRAREQGEAERQQLSKVAQQLEQE 554
Cdd:TIGR00618  625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR------EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  555 LQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARRE---HA 631
Cdd:TIGR00618  699 LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAAlqtGA 778
                          570       580       590
                   ....*....|....*....|....*....|...
gi 1034650606  632 KAVVSLRQIQRRAAQEKERSQELRRLQEEARKE 664
Cdd:TIGR00618  779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
569-701 6.83e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 40.04  E-value: 6.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  569 LEVARQGQQE---STEEAASLRQeLTQQQELYGQALqekvAEVETRLREQLSdTERRLNEARREHAKAVVSLRQIQRRAA 645
Cdd:PRK10929   119 LEKSRQAQQEqdrAREISDSLSQ-LPQQQTEARRQL----NEIERRLQTLGT-PNTPLAQAQLTALQAESAALKALVDEL 192
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  646 QEKERS----QELRRLQEEARKEEGQRLARRLQELerdKNLMLATLQQEGLLSRYKQQRL 701
Cdd:PRK10929   193 ELAQLSannrQELARLRSELAKKRSQQLDAYLQAL---RNQLNSQRQREAERALESTELL 249
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
101-429 6.93e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 40.16  E-value: 6.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  101 LRRLEEEVrlLRETSLQQKMR-LEAQAMELEALARAEKAGRAEAEGLRAALAGA-EVVRKNLEEG-----------SQRE 167
Cdd:pfam01576  249 LARLEEET--AQKNNALKKIReLEAQISELQEDLESERAARNKAEKQRRDLGEElEALKTELEDTldttaaqqelrSKRE 326
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  168 ---------LEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLrkQLSKTQed 238
Cdd:pfam01576  327 qevtelkkaLEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL--QQAKQD-- 402
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  239 leaqvtlVENLRKYVGEQVpSEVHSQTWELERQKlletmqhlQEDRDSLHAtaelLQVRVQSLTHILALQEEELTRKVQP 318
Cdd:pfam01576  403 -------SEHKRKKLEGQL-QELQARLSESERQR--------AELAEKLSK----LQSELESVSSLLNEAEGKNIKLSKD 462
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  319 SDSLEPEFtRKCQSLLNrwrekvfalmvQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVER 398
Cdd:pfam01576  463 VSSLESQL-QDTQELLQ-----------EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMK 530
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1034650606  399 MGAKGLQLELSRAQEARRRWQQQTASAEEQL 429
Cdd:pfam01576  531 KKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
PRK12705 PRK12705
hypothetical protein; Provisional
565-715 8.36e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 39.31  E-value: 8.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 565 LGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETRLREQLsdterrLNEARREHAKAVVSLRQIQRRA 644
Cdd:PRK12705   17 LLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQ------RQEARREREELQREEERLVQKE 90
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034650606 645 AQEKERSQELrRLQEEARKEEGQRLARRLQEL-ERDKNLMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSV 715
Cdd:PRK12705   91 EQLDARAEKL-DNLENQLEEREKALSARELELeELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQ 161
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
569-665 8.65e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 39.42  E-value: 8.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 569 LEVARQGQQESTEEAASLRQELTQQQElygqALQEKVAEVETRLREQLSDTERR----LNEARREHAKAVVSLRQIQR-- 642
Cdd:PRK00409  525 LEELERELEQKAEEAEALLKEAEKLKE----ELEEKKEKLQEEEDKLLEEAEKEaqqaIKEAKKEADEIIKELRQLQKgg 600
                          90       100
                  ....*....|....*....|....
gi 1034650606 643 -RAAQEKERSQELRRLQEEARKEE 665
Cdd:PRK00409  601 yASVKAHELIEARKRLNKANEKKE 624
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
150-381 8.85e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 8.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 150 LAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEA------LSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQR 223
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEkallkqLAALERRIAALARRIRALEQELAALEAELAELEK 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 224 EAELLRKQLSKTQEDLEAQVTlveNLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQEDRDSLhatAELLQVRVQSLTH 303
Cdd:COG4942    91 EIAELRAELEAQKEELAELLR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ---AEELRADLAELAA 164
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034650606 304 ILALQEEELTRKVQPSDSLEPEftrkcQSLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQA 381
Cdd:COG4942   165 LRAELEAERAELEALLAELEEE-----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
506-700 9.04e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.51  E-value: 9.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  506 QQLREERNRLDAELQLSArlIQQEVGRAREQGEAERQQLSKVAQQLEQELqqtqesLASLGLQLEVARQGQQESTEEAAS 585
Cdd:COG4913    242 EALEDAREQIELLEPIRE--LAERYAAARERLAELEYLRAALRLWFAQRR------LELLEAELEELRAELARLEAELER 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  586 LRQELTQQQE----LYGQALQEKVAEVEtRLREQLSDTERRLNEARREHAKAVVSLRQI--------------QRRAAQE 647
Cdd:COG4913    314 LEARLDALREeldeLEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALglplpasaeefaalRAEAAAL 392
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1034650606  648 KERSQELRRLQEEARkeegQRLARRLQELERDknlmLATLQQEglLSRYKQQR 700
Cdd:COG4913    393 LEALEEELEALEEAL----AEAEAALRDLRRE----LRELEAE--IASLERRK 435
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
495-618 9.40e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 39.55  E-value: 9.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606  495 PPPvtDVSLELQQLREERNRLDAELQLSARLIQQEVGRArEQGEAERQQLSKVAQQLEQELQQTQESLASLglqlevarq 574
Cdd:PRK11448   136 PPE--DPENLLHALQQEVLTLKQQLELQAREKAQSQALA-EAQQQELVALEGLAAELEEKQQELEAQLEQL--------- 203
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1034650606  575 gQQESTEEAASLRQELTQQQELYGQALQekVAEVETRL--REQLSD 618
Cdd:PRK11448   204 -QEKAAETSQERKQKRKEITDQAAKRLE--LSEEETRIliDQQLRK 246
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
189-439 9.49e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.98  E-value: 9.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 189 ALSSLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQvpsevhsqtwel 268
Cdd:COG4942    14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL------------ 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 269 eRQKLLETMQHLQEDRDSLHATAELLQVRVQSLthILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKvfaLMVQL 348
Cdd:COG4942    82 -EAELAELEKEIAELRAELEAQKEELAELLRAL--YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE---QAEEL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034650606 349 KAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGAKGLQLELSRAQEARRRWQQQTASAEEQ 428
Cdd:COG4942   156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
                         250
                  ....*....|.
gi 1034650606 429 LRLVVNAVSSS 439
Cdd:COG4942   236 AAAAAERTPAA 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH