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Conserved domains on  [gi|2024332805|ref|XP_015154756|]
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interferon alpha/beta receptor 1 isoform X1 [Gallus gallus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 133-231 2.67e-27

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


:

Pssm-ID: 462746  Cd Length: 103  Bit Score: 105.89  E-value: 2.67e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 133 AQIGPPEIALQSINGAIKINISPPEAN--QVRKMWLISVFFKYNVVIWDNSSNVEK--VRSILPIDVINDLAPETTYCLK 208
Cdd:pfam09294   1 TIIGPPEVELEVEGGSLNVTVKDPETRegKNLSLRDLYGSLQYRVSYWKNSSNGEKknTTSTNSFVVLSDLEPGTTYCVS 80

                          90       100
                  ....*....|....*....|...
gi 2024332805 209 VQATVPLEYKEGLFSPIHCIKTT 231
Cdd:pfam09294  81 VQAFSPLDNKSSQRSPPQCIRTT 103
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 341-440 6.26e-22

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


:

Pssm-ID: 462746  Cd Length: 103  Bit Score: 90.48  E-value: 6.26e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 341 EIGPPDVKVDISDVLLHIKITPPGGPG--NKIMSDLY-DFSYQILYWKNSSDNEEEVKmkETKQTIATVSDLAPSTLYCV 417
Cdd:pfam09294   2 IIGPPEVELEVEGGSLNVTVKDPETREgkNLSLRDLYgSLQYRVSYWKNSSNGEKKNT--TSTNSFVVLSDLEPGTTYCV 79

                          90       100
                  ....*....|....*....|...
gi 2024332805 418 KVQAFSEAYNKSSDFSREECIGT 440
Cdd:pfam09294  80 SVQAFSPLDNKSSQRSPPQCIRT 102
Tissue_fac super family cl47630
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 27-121 5.10e-16

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


The actual alignment was detected with superfamily member pfam01108:

Pssm-ID: 460067  Cd Length: 107  Bit Score: 73.96  E-value: 5.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805  27 AGQTNLKSPQDIQVYAVNTNFTLMWNY-TGDGTNVTFSAQYQcfddlQTSEPEWKELSGCQNVSHTECDFSSAITAYYDT 105
Cdd:pfam01108  17 AGGPSLPAPQNVTFQSTNFKNILTWEPgPNSPPDVVYTVQYK-----IYGSGDWKNVPNCTNITRTECDLTDETSDLTET 91

                          90
                  ....*....|....*.
gi 2024332805 106 HHIRIRAERREAKSPW 121
Cdd:pfam01108  92 YYARVRAVSGGGTSSW 107
Tissue_fac super family cl47630
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 236-319 2.04e-13

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


The actual alignment was detected with superfamily member pfam01108:

Pssm-ID: 460067  Cd Length: 107  Bit Score: 66.64  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 236 DLLCPTNVRVFALNMKFYLLWD--NHYNEHVTYTVQYLTGYLKNlyddysskWQKVSGCENITSMKCNLSSVIKPTSASY 313
Cdd:pfam01108  21 SLPAPQNVTFQSTNFKNILTWEpgPNSPPDVVYTVQYKIYGSGD--------WKNVPNCTNITRTECDLTDETSDLTETY 92


                  ....*.
gi 2024332805 314 YFRVQA 319
Cdd:pfam01108  93 YARVRA 98
 
Name Accession Description Interval E-value
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 133-231 2.67e-27

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


Pssm-ID: 462746  Cd Length: 103  Bit Score: 105.89  E-value: 2.67e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 133 AQIGPPEIALQSINGAIKINISPPEAN--QVRKMWLISVFFKYNVVIWDNSSNVEK--VRSILPIDVINDLAPETTYCLK 208
Cdd:pfam09294   1 TIIGPPEVELEVEGGSLNVTVKDPETRegKNLSLRDLYGSLQYRVSYWKNSSNGEKknTTSTNSFVVLSDLEPGTTYCVS 80

                          90       100
                  ....*....|....*....|...
gi 2024332805 209 VQATVPLEYKEGLFSPIHCIKTT 231
Cdd:pfam09294  81 VQAFSPLDNKSSQRSPPQCIRTT 103
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 341-440 6.26e-22

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


Pssm-ID: 462746  Cd Length: 103  Bit Score: 90.48  E-value: 6.26e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 341 EIGPPDVKVDISDVLLHIKITPPGGPG--NKIMSDLY-DFSYQILYWKNSSDNEEEVKmkETKQTIATVSDLAPSTLYCV 417
Cdd:pfam09294   2 IIGPPEVELEVEGGSLNVTVKDPETREgkNLSLRDLYgSLQYRVSYWKNSSNGEKKNT--TSTNSFVVLSDLEPGTTYCV 79

                          90       100
                  ....*....|....*....|...
gi 2024332805 418 KVQAFSEAYNKSSDFSREECIGT 440
Cdd:pfam09294  80 SVQAFSPLDNKSSQRSPPQCIRT 102
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 27-121 5.10e-16

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 73.96  E-value: 5.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805  27 AGQTNLKSPQDIQVYAVNTNFTLMWNY-TGDGTNVTFSAQYQcfddlQTSEPEWKELSGCQNVSHTECDFSSAITAYYDT 105
Cdd:pfam01108  17 AGGPSLPAPQNVTFQSTNFKNILTWEPgPNSPPDVVYTVQYK-----IYGSGDWKNVPNCTNITRTECDLTDETSDLTET 91

                          90
                  ....*....|....*.
gi 2024332805 106 HHIRIRAERREAKSPW 121
Cdd:pfam01108  92 YYARVRAVSGGGTSSW 107
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 236-319 2.04e-13

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 66.64  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 236 DLLCPTNVRVFALNMKFYLLWD--NHYNEHVTYTVQYLTGYLKNlyddysskWQKVSGCENITSMKCNLSSVIKPTSASY 313
Cdd:pfam01108  21 SLPAPQNVTFQSTNFKNILTWEpgPNSPPDVVYTVQYKIYGSGD--------WKNVPNCTNITRTECDLTDETSDLTETY 92


                  ....*.
gi 2024332805 314 YFRVQA 319
Cdd:pfam01108  93 YARVRA 98
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 344-440 4.66e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 47.88  E-value: 4.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 344 PPDVKV-DISDVLLHIKITPPGGPGNKImsdlydFSYQILYWKNSSDNEEEVKMKETKQTIATVSDLAPSTLYCVKVQAF 422
Cdd:cd00063     4 PTNLRVtDVTSTSVTLSWTPPEDDGGPI------TGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAV 77

                          90
                  ....*....|....*...
gi 2024332805 423 SEAYNksSDFSREECIGT 440
Cdd:cd00063    78 NGGGE--SPPSESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 344-425 2.81e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 42.60  E-value: 2.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805  344 PPDVKV-DISDVLLHIKITPPGGPGNkimsDLYDFSYQILYWKNSSdnEEEVKMKETKQTIATVSDLAPSTLYCVKVQAF 422
Cdd:smart00060   4 PSNLRVtDVTSTSVTLSWEPPPDDGI----TGYIVGYRVEYREEGS--EWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAV 77


                   ...
gi 2024332805  423 SEA 425
Cdd:smart00060  78 NGA 80
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
165-458 3.70e-05

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.53  E-value: 3.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 165 WLISVFFKYNVVIWDNSSNVEkvrSILPIDVINDLAPETTYCLKVQATVplEYKEGLFSPIHCIktTRKVNDLLCPTNVR 244
Cdd:COG3401   168 VVVSPDTSATAAVATTSLTVT---STTLVDGGGDIEPGTTYYYRVAATD--TGGESAPSNEVSV--TTPTTPPSAPTGLT 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 245 VFA-LNMKFYLLWDNHYNEHVT-YTVqyltgYLKNlydDYSSKWQKVSGCENITSMKCNLSSvikptSASYYFRVQAMNE 322
Cdd:COG3401   241 ATAdTPGSVTLSWDPVTESDATgYRV-----YRSN---SGDGPFTKVATVTTTSYTDTGLTN-----GTTYYYRVTAVDA 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 323 -YNKSCLSKDVEVDPPVTNEIGPPDVKVDISDvllhikitppggpGNKIM-----SDLYDFSYQILYWKNSSDNEEEVKM 396
Cdd:COG3401   308 aGNESAPSNVVSVTTDLTPPAAPSGLTATAVG-------------SSSITlswtaSSDADVTGYNVYRSTSGGGTYTKIA 374

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024332805 397 KETKQTIATVSDLAPSTLYCVKVQAFSEAyNKSSDFSREECIGTAGATFAGALTVVLIVASL 458
Cdd:COG3401   375 ETVTTTSYTDTGLTPGTTYYYKVTAVDAA-GNESAPSEEVSATTASAASGESLTASVDAVPL 435
 
Name Accession Description Interval E-value
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 133-231 2.67e-27

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


Pssm-ID: 462746  Cd Length: 103  Bit Score: 105.89  E-value: 2.67e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 133 AQIGPPEIALQSINGAIKINISPPEAN--QVRKMWLISVFFKYNVVIWDNSSNVEK--VRSILPIDVINDLAPETTYCLK 208
Cdd:pfam09294   1 TIIGPPEVELEVEGGSLNVTVKDPETRegKNLSLRDLYGSLQYRVSYWKNSSNGEKknTTSTNSFVVLSDLEPGTTYCVS 80

                          90       100
                  ....*....|....*....|...
gi 2024332805 209 VQATVPLEYKEGLFSPIHCIKTT 231
Cdd:pfam09294  81 VQAFSPLDNKSSQRSPPQCIRTT 103
Interfer-bind pfam09294
Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary ...
 341-440 6.26e-22

Interferon-alpha/beta receptor, fibronectin type III; Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha.


Pssm-ID: 462746  Cd Length: 103  Bit Score: 90.48  E-value: 6.26e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 341 EIGPPDVKVDISDVLLHIKITPPGGPG--NKIMSDLY-DFSYQILYWKNSSDNEEEVKmkETKQTIATVSDLAPSTLYCV 417
Cdd:pfam09294   2 IIGPPEVELEVEGGSLNVTVKDPETREgkNLSLRDLYgSLQYRVSYWKNSSNGEKKNT--TSTNSFVVLSDLEPGTTYCV 79

                          90       100
                  ....*....|....*....|...
gi 2024332805 418 KVQAFSEAYNKSSDFSREECIGT 440
Cdd:pfam09294  80 SVQAFSPLDNKSSQRSPPQCIRT 102
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 27-121 5.10e-16

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 73.96  E-value: 5.10e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805  27 AGQTNLKSPQDIQVYAVNTNFTLMWNY-TGDGTNVTFSAQYQcfddlQTSEPEWKELSGCQNVSHTECDFSSAITAYYDT 105
Cdd:pfam01108  17 AGGPSLPAPQNVTFQSTNFKNILTWEPgPNSPPDVVYTVQYK-----IYGSGDWKNVPNCTNITRTECDLTDETSDLTET 91

                          90
                  ....*....|....*.
gi 2024332805 106 HHIRIRAERREAKSPW 121
Cdd:pfam01108  92 YYARVRAVSGGGTSSW 107
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 236-319 2.04e-13

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 66.64  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 236 DLLCPTNVRVFALNMKFYLLWD--NHYNEHVTYTVQYLTGYLKNlyddysskWQKVSGCENITSMKCNLSSVIKPTSASY 313
Cdd:pfam01108  21 SLPAPQNVTFQSTNFKNILTWEpgPNSPPDVVYTVQYKIYGSGD--------WKNVPNCTNITRTECDLTDETSDLTETY 92


                  ....*.
gi 2024332805 314 YFRVQA 319
Cdd:pfam01108  93 YARVRA 98
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 344-440 4.66e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 47.88  E-value: 4.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 344 PPDVKV-DISDVLLHIKITPPGGPGNKImsdlydFSYQILYWKNSSDNEEEVKMKETKQTIATVSDLAPSTLYCVKVQAF 422
Cdd:cd00063     4 PTNLRVtDVTSTSVTLSWTPPEDDGGPI------TGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAV 77

                          90
                  ....*....|....*...
gi 2024332805 423 SEAYNksSDFSREECIGT 440
Cdd:cd00063    78 NGGGE--SPPSESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 344-425 2.81e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 42.60  E-value: 2.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805  344 PPDVKV-DISDVLLHIKITPPGGPGNkimsDLYDFSYQILYWKNSSdnEEEVKMKETKQTIATVSDLAPSTLYCVKVQAF 422
Cdd:smart00060   4 PSNLRVtDVTSTSVTLSWEPPPDDGI----TGYIVGYRVEYREEGS--EWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAV 77


                   ...
gi 2024332805  423 SEA 425
Cdd:smart00060  78 NGA 80
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
165-458 3.70e-05

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 46.53  E-value: 3.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 165 WLISVFFKYNVVIWDNSSNVEkvrSILPIDVINDLAPETTYCLKVQATVplEYKEGLFSPIHCIktTRKVNDLLCPTNVR 244
Cdd:COG3401   168 VVVSPDTSATAAVATTSLTVT---STTLVDGGGDIEPGTTYYYRVAATD--TGGESAPSNEVSV--TTPTTPPSAPTGLT 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 245 VFA-LNMKFYLLWDNHYNEHVT-YTVqyltgYLKNlydDYSSKWQKVSGCENITSMKCNLSSvikptSASYYFRVQAMNE 322
Cdd:COG3401   241 ATAdTPGSVTLSWDPVTESDATgYRV-----YRSN---SGDGPFTKVATVTTTSYTDTGLTN-----GTTYYYRVTAVDA 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 323 -YNKSCLSKDVEVDPPVTNEIGPPDVKVDISDvllhikitppggpGNKIM-----SDLYDFSYQILYWKNSSDNEEEVKM 396
Cdd:COG3401   308 aGNESAPSNVVSVTTDLTPPAAPSGLTATAVG-------------SSSITlswtaSSDADVTGYNVYRSTSGGGTYTKIA 374

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024332805 397 KETKQTIATVSDLAPSTLYCVKVQAFSEAyNKSSDFSREECIGTAGATFAGALTVVLIVASL 458
Cdd:COG3401   375 ETVTTTSYTDTGLTPGTTYYYKVTAVDAA-GNESAPSEEVSATTASAASGESLTASVDAVPL 435
fn3 pfam00041
Fibronectin type III domain;
344-427 4.20e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 39.32  E-value: 4.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024332805 344 PPDVKV-DISDVLLHIKITPPGGPGNKIMSdlydfsYQILYWkNSSDNEEEVKMKETKQTI-ATVSDLAPSTLYCVKVQA 421
Cdd:pfam00041   3 PSNLTVtDVTSTSLTVSWTPPPDGNGPITG------YEVEYR-PKNSGEPWNEITVPGTTTsVTLTGLKPGTEYEVRVQA 75


                  ....*.
gi 2024332805 422 FSEAYN 427
Cdd:pfam00041  76 VNGGGE 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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