NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|928044744|ref|XP_013871270|]
View 

PREDICTED: beta-1,3-galactosyltransferase 5-like isoform X2 [Austrofundulus limnaeus]

Protein Classification

glycosyltransferase family protein( domain architecture ID 229488)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Galactosyl_T super family cl21608
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 158-350 9.39e-44

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


The actual alignment was detected with superfamily member pfam01762:

Pssm-ID: 473923 [Multi-domain]  Cd Length: 195  Bit Score: 150.55  E-value: 9.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744  158 KARSLIRRTWGKEKMVLDKLVETVFVVGLSGENGAQ-QERLKQESLQYHDLIQSNFQDSYRNLTIKTMVMLEWLSKYCSK 236
Cdd:pfam01762   1 ARRNAIRKTWMNQGNSEGGRIKSLFLVGLSADTDGKvADLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLWAVSKCPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744  237 VSYILKIDSDVLLHVKNLVELLLNPNT-PKQNYMTGLVWWHSPVLRSRFNKFYMPISVFPEPEYPPYPLGFAYVMSMDLP 315
Cdd:pfam01762  81 AKYIGKIDDDVYFFPDKLLSLLDNGNIdPSESSFYGYVMEEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLSRDAA 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 928044744  316 PKILNASLQIKPIFIEDAYLGMCLKHLGISPTNPP 350
Cdd:pfam01762 161 EKLLKASKHRRFLQIEDVYVGILANDLGISRVNLP 195
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 158-350 9.39e-44

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 426415 [Multi-domain]  Cd Length: 195  Bit Score: 150.55  E-value: 9.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744  158 KARSLIRRTWGKEKMVLDKLVETVFVVGLSGENGAQ-QERLKQESLQYHDLIQSNFQDSYRNLTIKTMVMLEWLSKYCSK 236
Cdd:pfam01762   1 ARRNAIRKTWMNQGNSEGGRIKSLFLVGLSADTDGKvADLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLWAVSKCPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744  237 VSYILKIDSDVLLHVKNLVELLLNPNT-PKQNYMTGLVWWHSPVLRSRFNKFYMPISVFPEPEYPPYPLGFAYVMSMDLP 315
Cdd:pfam01762  81 AKYIGKIDDDVYFFPDKLLSLLDNGNIdPSESSFYGYVMEEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLSRDAA 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 928044744  316 PKILNASLQIKPIFIEDAYLGMCLKHLGISPTNPP 350
Cdd:pfam01762 161 EKLLKASKHRRFLQIEDVYVGILANDLGISRVNLP 195
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
 156-314 9.82e-03

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 38.24  E-value: 9.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744 156 DLKARSLIRRTWGKEKMVLDKLVETVFVVGLSgENGAQQERLKQESLQYHDLIQSNFQDSYRNLTIKTMVMLEWLSKYCS 235
Cdd:PLN03133 397 NFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLH-KNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVS 475

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744 236 kVSYILKIDSDVLLHVKnlvELLLNPNTPKQNY--MTGLVWWHSPVLRSRFNKFYMPISVFPEPEYPPYPLGFAYVMSMD 313
Cdd:PLN03133 476 -AKYVMKTDDDAFVRVD---EVLASLKRTNVSHglLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRD 551


                 .
gi 928044744 314 L 314
Cdd:PLN03133 552 I 552
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
 158-350 9.39e-44

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 426415 [Multi-domain]  Cd Length: 195  Bit Score: 150.55  E-value: 9.39e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744  158 KARSLIRRTWGKEKMVLDKLVETVFVVGLSGENGAQ-QERLKQESLQYHDLIQSNFQDSYRNLTIKTMVMLEWLSKYCSK 236
Cdd:pfam01762   1 ARRNAIRKTWMNQGNSEGGRIKSLFLVGLSADTDGKvADLVMEEAKLYGDIVVVDFEDTYENLTFKTLTGLLWAVSKCPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744  237 VSYILKIDSDVLLHVKNLVELLLNPNT-PKQNYMTGLVWWHSPVLRSRFNKFYMPISVFPEPEYPPYPLGFAYVMSMDLP 315
Cdd:pfam01762  81 AKYIGKIDDDVYFFPDKLLSLLDNGNIdPSESSFYGYVMEEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLSRDAA 160

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 928044744  316 PKILNASLQIKPIFIEDAYLGMCLKHLGISPTNPP 350
Cdd:pfam01762 161 EKLLKASKHRRFLQIEDVYVGILANDLGISRVNLP 195
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
 156-314 9.82e-03

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 38.24  E-value: 9.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744 156 DLKARSLIRRTWGKEKMVLDKLVETVFVVGLSgENGAQQERLKQESLQYHDLIQSNFQDSYRNLTIKTMVMLEWLSKYCS 235
Cdd:PLN03133 397 NFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLH-KNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVS 475

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 928044744 236 kVSYILKIDSDVLLHVKnlvELLLNPNTPKQNY--MTGLVWWHSPVLRSRFNKFYMPISVFPEPEYPPYPLGFAYVMSMD 313
Cdd:PLN03133 476 -AKYVMKTDDDAFVRVD---EVLASLKRTNVSHglLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRD 551


                 .
gi 928044744 314 L 314
Cdd:PLN03133 552 I 552
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH