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Conserved domains on  [gi|922430990|ref|XP_013621571|]
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PREDICTED: transcription factor TCP21-like [Brassica oleracea var. oleracea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCP super family cl47831
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 25-91 1.98e-33

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


The actual alignment was detected with superfamily member pfam03634:

Pssm-ID: 460998  Cd Length: 152  Bit Score: 117.45  E-value: 1.98e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922430990   25 PPTKDRHSKVDG----RGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASF 91
Cdd:pfam03634   1 TSKKDRHSKICTagglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANF 71
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 25-91 1.98e-33

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 117.45  E-value: 1.98e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922430990   25 PPTKDRHSKVDG----RGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASF 91
Cdd:pfam03634   1 TSKKDRHSKICTagglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANF 71
TCP2 PLN03106
Protein TCP2; Provisional
 28-78 1.27e-05

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 45.45  E-value: 1.27e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 922430990  28 KDRHSKV----DGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSI 78
Cdd:PLN03106  75 KDRHSKVltskGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSI 129
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 25-91 1.98e-33

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 117.45  E-value: 1.98e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 922430990   25 PPTKDRHSKVDG----RGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASF 91
Cdd:pfam03634   1 TSKKDRHSKICTagglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANF 71
TCP2 PLN03106
Protein TCP2; Provisional
 28-78 1.27e-05

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 45.45  E-value: 1.27e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 922430990  28 KDRHSKV----DGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSI 78
Cdd:PLN03106  75 KDRHSKVltskGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSI 129
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 2-78 2.18e-05

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 44.47  E-value: 2.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922430990   2 ENNDGAMTNGVIINKGPLNAVKKPPTKDRHSKV---DG-RGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPS 77
Cdd:PLN03105  25 EDNTGLMRNWNNPSSRIIRVSRASGGKDRHSKVltsKGlRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDS 104


                 .
gi 922430990  78 I 78
Cdd:PLN03105 105 I 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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