|
Name |
Accession |
Description |
Interval |
E-value |
| INCENP_N |
pfam12178 |
Chromosome passenger complex (CPC) protein INCENP N terminal; This domain family is found in ... |
6-41 |
7.52e-17 |
|
Chromosome passenger complex (CPC) protein INCENP N terminal; This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N terminal domain is the domain involved in formation of this three helical bundle.
Pssm-ID: 463484 [Multi-domain] Cd Length: 36 Bit Score: 74.66 E-value: 7.52e-17
10 20 30
....*....|....*....|....*....|....*.
gi 767968084 6 PGPIHLLELCDQKLMEFLCNMDNKDLVWLEEIQEEA 41
Cdd:pfam12178 1 SGPASLLEVCDQKLSEFLCEIDNKHLVWLEEIEEEA 36
|
|
| INCENP_ARK-bind |
pfam03941 |
Inner centromere protein, ARK binding region; This region of the inner centromere protein has ... |
838-892 |
3.17e-15 |
|
Inner centromere protein, ARK binding region; This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast.
Pssm-ID: 461100 [Multi-domain] Cd Length: 53 Bit Score: 70.30 E-value: 3.17e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 767968084 838 NSDDSTDDEAHPRKPIPTWARGTPLSQAIIHQYyhPPNLLELFGTILPLDLEDIF 892
Cdd:pfam03941 1 NSDDEDDDEDEPRKPVPSWAQSPNLRQALIRQE--PIDPDEIFGPIPPLNLEEIF 53
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
535-784 |
2.81e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 2.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 535 VEKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKfaQIDEKTEKAK 614
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR--RELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 615 EERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQERRE 694
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 695 QERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERQLQE 774
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250
....*....|
gi 767968084 775 EQEKKAKEAA 784
Cdd:COG1196 482 LLEELAEAAA 491
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
536-790 |
3.88e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRRQKVEEDKR-----RRLEEVK----LKREERLRKVLQARERVEQMKEEKKKQIEQKFAQI 606
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKkadeaKKAEEKKkadeLKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 607 DEKTEKAK-EERLAEEKAKKKAAAKKMEEVEARR------KQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAA 679
Cdd:PTZ00121 1586 AKKAEEARiEEVMKLYEEEKKMKAEEAKKAEEAKikaeelKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 680 EAKRlAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAErELQEREKALRLQKEQLQRELEEKK 759
Cdd:PTZ00121 1666 EAKK-AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEEDK 1743
|
250 260 270
....*....|....*....|....*....|....*..
gi 767968084 760 KKEEQQRLAE------RQLQEEQEKKAKEAAGASKAL 790
Cdd:PTZ00121 1744 KKAEEAKKDEeekkkiAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-788 |
1.25e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.93 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMK---------EEKKKQIEQKFAQID 607
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaakaeAEAAADEAEAAEEKA 1366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 608 EKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEeqerLRKAAEAKRLAEQ 687
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE----KKKADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 688 REQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQE-REKALRLQKEQLQRELEEKKKKEEQQR 766
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEaKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
250 260
....*....|....*....|..
gi 767968084 767 LAERQLQEEQEKKAKEAAGASK 788
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEE 1544
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
538-788 |
2.07e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 538 ERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREErLRKVLQARERVEQMK--EEKKKQIEQKFAQIDEKTEKAKE 615
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE-AKKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKAEE 1651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 616 ERlaeekakKKAAAKKMEEVEARRKQEEEARRLRwlqqeeeerrhqellQKKKEEEQERlRKAAEAKRLAEQREQERREQ 695
Cdd:PTZ00121 1652 LK-------KAEEENKIKAAEEAKKAEEDKKKAE---------------EAKKAEEDEK-KAAEALKKEAEEAKKAEELK 1708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 696 ERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERQLQEE 775
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
250
....*....|...
gi 767968084 776 QEKKAKEAAGASK 788
Cdd:PTZ00121 1789 DEKRRMEVDKKIK 1801
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
536-781 |
7.32e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 7.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEE----AEQLRRqKVEEDKRRRlEEVKlKREERLRKVLQARERVEQMK--EEKKKQIEQKfAQIDEK 609
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEekkkADEAKK-KAEEDKKKA-DELK-KAAAAKKKADEAKKKAEEKKkaDEAKKKAEEA-KKADEA 1449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 610 TEKAKEERlaeEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQ---ERLRKAAEAKRLAE 686
Cdd:PTZ00121 1450 KKKAEEAK---KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkaDEAKKAEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 687 QREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQR 766
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
250
....*....|....*
gi 767968084 767 LAERQLQEEQEKKAK 781
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIK 1621
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
534-683 |
4.75e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 4.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 534 FVEKERQRLENLRRKEE----AEQLRRqkvEEDKRRRLEEVKLKREERLRKVLQARERVEQMK----EEKKKQIEQKfaQ 605
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEakikAEELKK---AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaaEEAKKAEEDK--K 1675
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767968084 606 IDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQelLQKKKEEEQERLRKAAEAKR 683
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK--AEEAKKEAEEDKKKAEEAKK 1751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-789 |
5.26e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 5.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRKEEAEQLRRQKVEEDKRRrLEEVKLKREERlRKVLQARERVEQMK---EEKKKQIEQ--KFAQIDEKTE 611
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKK-ADEAKKKAEEA-KKADEAKKKAEEAKkkaDAAKKKAEEakKAAEAAKAEA 1352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 612 KAKEERLAEEKAKKKAaakkmeeveARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQ---ERLRKAAEAKRLAEQR 688
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEA---------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkaDELKKAAAAKKKADEA 1423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 689 EQERREQERREQERREQERREQERReqerqlAEQERRREQERLQAERELQEREKALRLQK---EQLQRELEEKKKKEEQQ 765
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKADE------AKKKAEEAKKAEEAKKKAEEAKKADEAKKkaeEAKKADEAKKKAEEAKK 1497
|
250 260
....*....|....*....|....
gi 767968084 766 RLAERQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1498 KADEAKKAAEAKKKADEAKKAEEA 1521
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
536-789 |
5.82e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRK-EEAEQLRRQKVEEDKRRRLEEVKLKREERlRKVLQARERVEQMK--EEKKKQIEQKfAQIDEKTEK 612
Cdd:PTZ00121 1414 AAAKKKADEAKKKaEEKKKADEAKKKAEEAKKADEAKKKAEEA-KKAEEAKKKAEEAKkaDEAKKKAEEA-KKADEAKKK 1491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 613 AKEERLAEEKAKKKAAAKKMEEvEARRKqeEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQER 692
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKAD-EAKKA--EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 693 REQERREQERREQERREQERREQERQLAEQERRREQERLQAE---RELQEREKALRLQKEQLQRELEEKKKKEEQQ--RL 767
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEekKK 1648
|
250 260
....*....|....*....|..
gi 767968084 768 AERQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKA 1670
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-781 |
5.82e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRKEE-----AEQLRRQKVEEDKRRRLEEVKLKRE-ERLRKVLQARERVEQMK-EEKKKQIEQKFAqidEK 609
Cdd:PTZ00121 1480 EEAKKADEAKKKAEeakkkADEAKKAAEAKKKADEAKKAEEAKKaDEAKKAEEAKKADEAKKaEEKKKADELKKA---EE 1556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 610 TEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQ---ERLRKAAEAKRLAE 686
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKikaEELKKAEEEKKKVE 1636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 687 QREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQR 766
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
250
....*....|....*
gi 767968084 767 LAERQLQEEQEKKAK 781
Cdd:PTZ00121 1717 KAEELKKAEEENKIK 1731
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
536-790 |
7.28e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 7.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQrLENLRRkeEAEQLRR-QKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAK 614
Cdd:COG1196 197 ELERQ-LEPLER--QAEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 615 ------EERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQR 688
Cdd:COG1196 274 leleelELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 689 EQERREQERREQERREQERREQERREQERQLAEQ---ERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQ 765
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEElleALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260
....*....|....*....|....*
gi 767968084 766 RLAERQLQEEQEKKAKEAAGASKAL 790
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEE 458
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-789 |
2.02e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRK-EEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMK--EEKKKQIEQKFAQIDEKTEKA 613
Cdd:PTZ00121 1454 EEAKKAEEAKKKaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKADEAKKAEEA 1533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 614 KEERlaeekakkkaaakkmeevEARRKQE-EEARRLRWLQQEEEERRHQELLQKKKEEEQER--LRKAAEAKRLAEQREQ 690
Cdd:PTZ00121 1534 KKAD------------------EAKKAEEkKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmaLRKAEEAKKAEEARIE 1595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 691 ERREQERREQERREQERREQERREQERQLAEQERRREQERLQAER----------ELQEREKALRLQKEQLQRELEEKKK 760
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKkeaeekkkaeELKKAEEENKIKAAEEAKKAEEDKK 1675
|
250 260
....*....|....*....|....*....
gi 767968084 761 KEEQQRLAERQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-789 |
1.98e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRK-EEAEQLRRQKVEEDKRRRLEEVKLKREERlRKVLQARERVEQMK--EEKKKQIEQKFAQIDEKTEKA 613
Cdd:PTZ00121 1428 EEKKKADEAKKKaEEAKKADEAKKKAEEAKKAEEAKKKAEEA-KKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAKKAA 1506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 614 KEERLAEEKAKKKAAAKKMEEVEARRKQE-EEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQER 692
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKaDEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 693 REQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERQL 772
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
250
....*....|....*..
gi 767968084 773 QEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1667 AKKAEEDKKKAEEAKKA 1683
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-789 |
2.18e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRKEEAEQLRRQKVEEDKR-----RRLEEVK----LKREERLRKVLQAR--------ERVEQMKEEKKKQI 599
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKkaeaaRKAEEVRkaeeLRKAEDARKAEAARkaeeerkaEEARKAEDAKKAEA 1228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 600 EQKFAQIDEKTEKAK---EERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEeerrhqellQKKKEEE---QE 673
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKkaeEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE---------EKKKADEakkAE 1299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 674 RLRKAAEAKRLAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERElQEREKALRLQKEQLQR 753
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA-EEKAEAAEKKKEEAKK 1378
|
250 260 270
....*....|....*....|....*....|....*...
gi 767968084 754 ELEEKKKKEEQQRLAE--RQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADeaKKKAEEDKKKADELKKAAAA 1416
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-789 |
2.29e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRKEEAeqlrrQKVEEDKR----RRLEEVKlKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEK 612
Cdd:PTZ00121 1203 EAARKAEEERKAEEA-----RKAEDAKKaeavKKAEEAK-KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 613 A-KEERLAEEKAKKKAAAKkmeevearrKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERL----RKAAEAKRLAEQ 687
Cdd:PTZ00121 1277 ArKADELKKAEEKKKADEA---------KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAdaakKKAEEAKKAAEA 1347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 688 REQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRL 767
Cdd:PTZ00121 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
250 260
....*....|....*....|..
gi 767968084 768 AERQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEAKKADEA 1449
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
539-790 |
2.94e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 539 RQRLENLRRKEEAEQLRRQKVEEDkRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAKEERL 618
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEER-LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 619 AEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAeqreqerreqerr 698
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE------------- 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 699 eqerreqerreqerreqeRQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERQLQEEQEK 778
Cdd:COG1196 440 ------------------EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250
....*....|..
gi 767968084 779 KAKEAAGASKAL 790
Cdd:COG1196 502 DYEGFLEGVKAA 513
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
536-789 |
3.90e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 3.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRRqkveEDKRRRLEEVKLKREERlRKVLQARERVEQMK----EEKKKQIEQKFAqiDEKTE 611
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKK----EEAKKKADAAKKKAEEK-KKADEAKKKAEEDKkkadELKKAAAAKKKA--DEAKK 1425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 612 KAKEERlaeEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEqerlRKAAEAKRLAEQREQE 691
Cdd:PTZ00121 1426 KAEEKK---KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA----KKADEAKKKAEEAKKK 1498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 692 RREQERREQERREQERREQERREQERQLAEQERRREQErlQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERq 771
Cdd:PTZ00121 1499 ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED- 1575
|
250
....*....|....*...
gi 767968084 772 lQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1576 -KNMALRKAEEAKKAEEA 1592
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
537-789 |
1.19e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 537 KERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREER----------LRKVLQARERVEQMKEEKKKQIEQKFAQI 606
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERnneeirkfeeARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 607 DEKTEKAK--EERLAEEKAKKKAAAKKMEEvEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEE----EQERLRKAAE 680
Cdd:PTZ00121 1289 KKKADEAKkaEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEaaadEAEAAEEKAE 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 681 AKRLAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAErELQEREKALRLQKEQLQRELEEKKK 760
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEEAKKA 1446
|
250 260
....*....|....*....|....*....
gi 767968084 761 KEEQQRLAERQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
536-784 |
3.15e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEE---AEQLRR----QKVEEDKR----RRLEEVK----LKREERLRKVLQARERVEQMKEEKKKQIE 600
Cdd:PTZ00121 1118 EEAKKKAEDARKAEEarkAEDARKaeeaRKAEDAKRveiaRKAEDARkaeeARKAEDAKKAEAARKAEEVRKAEELRKAE 1197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 601 QkfAQIDEKTEKAKEERLAEEKAKKKAAAKKME--EVEARRKQEEEAR-----RLRWLQQEEEERRHQELLQKKKEEEQE 673
Cdd:PTZ00121 1198 D--ARKAEAARKAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKkaeeeRNNEEIRKFEEARMAHFARRQAAIKAE 1275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 674 RLRKAAEAKRlAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQR 753
Cdd:PTZ00121 1276 EARKADELKK-AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
|
250 260 270
....*....|....*....|....*....|.
gi 767968084 754 ELEEKKKKEEQQRLAErqLQEEQEKKAKEAA 784
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAE--KKKEEAKKKADAA 1383
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
533-615 |
5.54e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.16 E-value: 5.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 533 SFVEKERQRLENLRR------KEEAEQLRRQkVEEDKRRRLEEVK------LKREERLRKVLQARERVEQMKEEKKKQIE 600
Cdd:PRK12704 42 RILEEAKKEAEAIKKealleaKEEIHKLRNE-FEKELRERRNELQklekrlLQKEENLDRKLELLEKREEELEKKEKELE 120
|
90
....*....|....*
gi 767968084 601 QKFAQIDEKTEKAKE 615
Cdd:PRK12704 121 QKQQELEKKEEELEE 135
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
536-789 |
7.85e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 7.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRlENLRRKEEAEQL----RRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAqidEKTE 611
Cdd:PTZ00121 1246 EEERNN-EEIRKFEEARMAhfarRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA---DEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 612 KAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRlrwlqQEEEERRHQELLQKKKEEEQerlRKAAEAKRLAEQREQE 691
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD-----EAEAAEEKAEAAEKKKEEAK---KKADAAKKKAEEKKKA 1393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 692 RREQERREQERREQER-REQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQREleekKKKEEQQRLAER 770
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK----KAEEAKKKAEEA 1469
|
250
....*....|....*....
gi 767968084 771 QLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEA 1488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
521-789 |
1.30e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 521 KRNTPLRMDPKCSFVEKERQR---LENLRRKEEAEQLRRQKVEEDkrRRLEEVKlKREERLRKVLQARERVEQMK-EEKK 596
Cdd:PTZ00121 1070 EGLKPSYKDFDFDAKEDNRADeatEEAFGKAEEAKKTETGKAEEA--RKAEEAK-KKAEDARKAEEARKAEDARKaEEAR 1146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 597 KQIEQKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQE----EEARRLRWLQQEEEERRHQELLQKKKEEEQ 672
Cdd:PTZ00121 1147 KAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEElrkaEDARKAEAARKAEEERKAEEARKAEDAKKA 1226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 673 ERLRKAAEAKRLAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQERLQAE-------RELQEREKALR 745
Cdd:PTZ00121 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeaKKAEEKKKADE 1306
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 767968084 746 LQK--------EQLQRELEEKKKKEEQ-QRLAERQLQEEQEKKAKEAAGASKA 789
Cdd:PTZ00121 1307 AKKkaeeakkaDEAKKKAEEAKKKADAaKKKAEEAKKAAEAAKAEAEAAADEA 1359
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
536-790 |
1.86e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLEnlrrkEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKqiEQKFAQIDEKTEKAKE 615
Cdd:pfam02463 152 PERRLEIE-----EEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKK--ALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 616 ERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQERREQ 695
Cdd:pfam02463 225 YLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 696 ERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAERQLQEE 775
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
250
....*....|....*
gi 767968084 776 QEKKAKEAAGASKAL 790
Cdd:pfam02463 385 RLSSAAKLKEEELEL 399
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
536-784 |
2.87e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRR-----QKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKT 610
Cdd:pfam02463 206 AKKALEYYQLKEKLELEEEYLlyldyLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 611 EKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEqreq 690
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL---- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 691 eRREQERREQERREQERREQERREQERQLAEQERRREQERLQAERE----LQEREKALRLQKEQLQRELEEKKKKEEQQR 766
Cdd:pfam02463 362 -EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEaqllLELARQLEDLLKEEKKEELEILEEEEESIE 440
|
250
....*....|....*...
gi 767968084 767 LAERQLQEEQEKKAKEAA 784
Cdd:pfam02463 441 LKQGKLTEEKEELEKQEL 458
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
546-685 |
3.49e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.11 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 546 RRKEEaeqlRRQKVEEDKRRRLEEVKLKREERLRKVLQARERveqmKEEKKKQIEQKFAQIDEKTEKAKEERLAEEKAKK 625
Cdd:PRK09510 75 KRAEE----QRKKKEQQQAEELQQKQAAEQERLKQLEKERLA----AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767968084 626 KAAAKKMEEVEARRKQ-EEEARRLrwlqQEEEERRHQELLQKKKEEEQERLRKAAEAKRLA 685
Cdd:PRK09510 147 AKAEAEAKRAAAAAKKaAAEAKKK----AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKA 203
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
536-782 |
5.11e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRRQKVEEDKRRRLeevKLKREER-----LRKVLQARERVEQMKEEKKKQIEQKFAQIDEKT 610
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQEL---KLKEQAKkaleyYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 611 EKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRlrwLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQ 690
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKK---LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 691 ERREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKALRLQKEQLQRELEEKKKKEEQQRLAER 770
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250
....*....|..
gi 767968084 771 QLQEEQEKKAKE 782
Cdd:pfam02463 403 EEKEAQLLLELA 414
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
529-687 |
9.39e-05 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 46.10 E-value: 9.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 529 DPKCSFVEKERQRLENLRR-KEEAEQLRRQKVEEDKRRRLEEVKLKREERlrkvlqarERVEQMKEEKKKQIEQKFAQID 607
Cdd:pfam15709 319 DPSKALLEKREQEKASRDRlRAERAEMRRLEVERKRREQEEQRRLQQEQL--------ERAEKMREELELEQQRRFEEIR 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 608 EKTEKAKEERLAEEKAKKKAAAKKMEEVE-ARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAE 686
Cdd:pfam15709 391 LRKQRLEEERQRQEEEERKQRLQLQAAQErARQQQEEFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRLME 470
|
.
gi 767968084 687 Q 687
Cdd:pfam15709 471 M 471
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
533-781 |
1.10e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 533 SFVEKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEK--- 609
Cdd:pfam02463 747 EEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLieq 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 610 TEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQRE 689
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES 906
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 690 QERREQERREQERREQERREQERREQERQLAEQERRREQERLQAE---RELQEREKALRLQKEQLQRE-----LEEKKKK 761
Cdd:pfam02463 907 QKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEennKEEEEERNKRLLLAKEELGKvnlmaIEEFEEK 986
|
250 260
....*....|....*....|
gi 767968084 762 EEQQRLAERQLQEEQEKKAK 781
Cdd:pfam02463 987 EERYNKDELEKERLEEEKKK 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
533-784 |
1.58e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 533 SFVEKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEqkfaQIDEKTEK 612
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE----ALDELRAE 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 613 AKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLrwlqqeeeerrhqellqKKKEEEQERLRKAAEAKRLAEQREQER 692
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQI-----------------EELSEDIESLAAEIEELEELIEELESE 874
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 693 REQERREQERREQERREQERREQERQLAEQERRREQERLQAER-ELQEREKALRLQKEQLQRELeekkkKEEQQRLAERQ 771
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELeELREKLAQLELRLEGLEVRI-----DNLQERLSEEY 949
|
250
....*....|...
gi 767968084 772 LQEEQEKKAKEAA 784
Cdd:TIGR02168 950 SLTLEEAEALENK 962
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
536-781 |
2.64e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRRQK--VEEDKRRRLEEVKLKRE---ERLRKVLQARERVEQMKEEKKKQIEQK---FAQID 607
Cdd:pfam17380 347 ERELERIRQEERKRELERIRQEEiaMEISRMRELERLQMERQqknERVRQELEAARKVKILEEERQRKIQQQkveMEQIR 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 608 EKTEKAK--------EERLAEEKAKKKAAAKKMEEVEARRKQEEEARRlrwlqqeeeerrhqellQKKKEEEQERLRKAA 679
Cdd:pfam17380 427 AEQEEARqrevrrleEERAREMERVRLEEQERQQQVERLRQQEEERKR-----------------KKLELEKEKRDRKRA 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 680 EAKRLAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQErlQAERELQEREKALRLQKEQLQ-RELEEK 758
Cdd:pfam17380 490 EEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAE--EERRKQQEMEERRRIQEQMRKaTEERSR 567
|
250 260
....*....|....*....|...
gi 767968084 759 KKKEEQQRLAERQLQEEQEKKAK 781
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARAE 590
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
535-682 |
2.69e-04 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 44.07 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 535 VEKERQRLENLRRKEEAEQ--LRRQKVEEDKRRRLEEVKLKR-EERLRKVLQARErveqmKEEKKKQIEQKFAQIDEKTE 611
Cdd:TIGR02794 52 ANRIQQQKKPAAKKEQERQkkLEQQAEEAEKQRAAEQARQKElEQRAAAEKAAKQ-----AEQAAKQAEEKQKQAEEAKA 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767968084 612 KAKEERLAEEKAKKKAAAKKmeevEARRKQEEEARrlrwlqqeeeerrHQELLQKKKEEEQERLRKAAEAK 682
Cdd:TIGR02794 127 KQAAEAKAKAEAEAERKAKE----EAAKQAEEEAK-------------AKAAAEAKKKAEEAKKKAEAEAK 180
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-791 |
4.47e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 535 VEKERQRLENLRRKEEAEQLRRQKVEEDKRR---RLEEVKLKREERLRKVLQAR----------ERVEQMKE---EKKKQ 598
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQEleeKLEELRLEVSELEEEIEELQkelyalaneiSRLEQQKQilrERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 599 IEQKFAQID---EKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERL 675
Cdd:TIGR02168 314 LERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 676 RKAAEAKRLAEQREQERREQERREQERREQERREQERREQERQLAEQERRREQERL----QAERELQEREKALRLQKEQL 751
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELeelqEELERLEEALEELREELEEA 473
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 767968084 752 QRELEEKKKKEEQQRLAERQLQEEQEKKAKEAAGASKALN 791
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
540-671 |
6.87e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.66 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 540 QRLENLRRkeEAEQlrrqkveedKRRRLEEvKLKREERLRKVLQAR-ERVEQMKEEKKKQIEQKFAQIdekTEKAKEERL 618
Cdd:PRK00409 523 ASLEELER--ELEQ---------KAEEAEA-LLKEAEKLKEELEEKkEKLQEEEDKLLEEAEKEAQQA---IKEAKKEAD 587
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767968084 619 AEEKAKKKAAAKKMEEVeaRRKQEEEARRLrwLQQEEEERRHQELLQKKKEEE 671
Cdd:PRK00409 588 EIIKELRQLQKGGYASV--KAHELIEARKR--LNKANEKKEKKKKKQKEKQEE 636
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
535-615 |
7.03e-04 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 41.80 E-value: 7.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 535 VEKERQRLENLRR------KEEAEQLRRQKVEEDKRRR-----LEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKF 603
Cdd:pfam12072 40 IEEAKKEAETKKKealleaKEEIHKLRAEAERELKERRnelqrQERRLLQKEETLDRKDESLEKKEESLEKKEKELEAQQ 119
|
90
....*....|..
gi 767968084 604 AQIDEKTEKAKE 615
Cdd:pfam12072 120 QQLEEKEEELEE 131
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
406-615 |
8.52e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 42.93 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 406 TEIANSTPNpKPAASSPETPSAGQQEAKTDQADGPREPPQSARRKRSY---------KQAVSELDEEQHLEDEELQPPR- 475
Cdd:pfam02029 94 ADEKESVAE-RKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYqenkwstevRQAEEEGEEEEDKSEEAEEVPTe 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 476 --SKTPSSPCPASKVVRPLRTFLHTVQRNQMLMTPTSAPRSVMKSFIKRNTPLRMDPKCSFVEKER---------QRLEN 544
Cdd:pfam02029 173 nfAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQEREEeaevfleaeQKLEE 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 545 LRRK------EEAEQLRRQK------VEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEK---KKQIEQKFAQIDEK 609
Cdd:pfam02029 253 LRRRrqekesEEFEKLRQKQqeaeleLEELKKKREERRKLLEEEEQRRKQEEAERKLREEEEKrrmKEEIERRRAEAAEK 332
|
....*.
gi 767968084 610 TEKAKE 615
Cdd:pfam02029 333 RQKLPE 338
|
|
| ERM_helical |
pfam20492 |
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ... |
541-649 |
1.20e-03 |
|
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins.
Pssm-ID: 466641 [Multi-domain] Cd Length: 120 Bit Score: 39.52 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 541 RLENLRRKEEAEQLRRQKVEEDKR-----RRLEEVKLKREERLRKVLQARERVEQmkeeKKKQIEQKFAQIDEKTEKAKE 615
Cdd:pfam20492 1 REEAEREKQELEERLKQYEEETKKaqeelEESEETAEELEEERRQAEEEAERLEQ----KRQEAEEEKERLEESAEMEAE 76
|
90 100 110
....*....|....*....|....*....|....
gi 767968084 616 ERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLR 649
Cdd:pfam20492 77 EKEQLEAELAEAQEEIARLEEEVERKEEEARRLQ 110
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
141-287 |
1.66e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.39 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 141 PSSPTPESPTMLTK---KPEDNHTQCQLVPVVEIGISERQNAEQHVTQLMSTEPLPRTLSPTPASATAPTSQ----GIPT 213
Cdd:PRK08691 380 PSAQTAEKETAAKKpqpRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQtsakSIQT 459
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767968084 214 SDEESTPKK---SKARILESITVSSLMATPQDPKGQGVGTGRSASKLRIAQVSPG-PRDSPAFPDSPWRERVLAPILP 287
Cdd:PRK08691 460 ASEAETPPEnqvSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAePFYGYGFPDNDCPPEDGAEIPP 537
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
539-789 |
1.67e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 42.24 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 539 RQRLENLRRKEEAEQ---LRRQKVEEDKRRRLEEVKLKREERLRK----VLQARERVEQMKEEKKKQIEQKFAQIDEKTE 611
Cdd:PRK05035 439 RAIEQEKKKAEEAKArfeARQARLEREKAAREARHKKAAEARAAKdkdaVAAALARVKAKKAAATQPIVIKAGARPDNSA 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 612 KAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRwlqqeEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQE 691
Cdd:PRK05035 519 VIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIAR-----AKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKK 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 692 RREQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREKalrlqKEQLQRELEEKK-KKEEQQRLAER 770
Cdd:PRK05035 594 AAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPR-----KAAVAAAIARAKaRKAAQQQANAE 668
|
250
....*....|....*....
gi 767968084 771 QLQEEQEKKAKEAAGASKA 789
Cdd:PRK05035 669 PEEAEDPKKAAVAAAIARA 687
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
535-683 |
2.49e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 535 VEKERQRlENLRRKEEAEQLRRQKV-EEDKRRRLEEVKLK-----------REERLRKVLQAR----ERVEQMKEEKKKQ 598
Cdd:pfam17380 383 LQMERQQ-KNERVRQELEAARKVKIlEEERQRKIQQQKVEmeqiraeqeeaRQREVRRLEEERaremERVRLEEQERQQQ 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 599 IE----QKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERrhqellQKKKEEEQER 674
Cdd:pfam17380 462 VErlrqQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEER------QKAIYEEERR 535
|
....*....
gi 767968084 675 lRKAAEAKR 683
Cdd:pfam17380 536 -REAEEERR 543
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
538-790 |
3.11e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 40.67 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 538 ERQRLENLRRKEEAEQLR---RQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAK 614
Cdd:pfam13868 79 EEQIEEREQKRQEEYEEKlqeREQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERIL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 615 EERLAEEKAKKKAAAKKMeevEARRKQEEEARRLRWLQQEEEERRHQ--ELLQKKKEEEQERLRKAAEAKRLAEQREQER 692
Cdd:pfam13868 159 EYLKEKAEREEEREAERE---EIEEEKEREIARLRAQQEKAQDEKAErdELRAKLYQEEQERKERQKEREEAEKKARQRQ 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 693 REQERREQERREQERREQERREQERQLAEQERRREQERLQAERELQEREkalRLQKEQLQRELEEKKKKEEQQRLAERQL 772
Cdd:pfam13868 236 ELQQAREEQIELKERRLAEEAEREEEEFERMLRKQAEDEEIEQEEAEKR---RMKRLEHRRELEKQIEEREEQRAAEREE 312
|
250
....*....|....*...
gi 767968084 773 QEEQEKKAKEAAGASKAL 790
Cdd:pfam13868 313 ELEEGERLREEEAERRER 330
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
536-649 |
4.06e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRRQKVEEdkRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAKE 615
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEE--ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
90 100 110
....*....|....*....|....*....|....
gi 767968084 616 ERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLR 649
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
536-616 |
4.56e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 536 EKERQRLENLRRKEEAEQLRR----------QKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEK---------- 595
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRdklteeyaelKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREInelkreldrl 411
|
90 100
....*....|....*....|....
gi 767968084 596 ---KKQIEQKFAQIDEKTEKAKEE 616
Cdd:TIGR02169 412 qeeLQRLSEELADLNAAIAGIEAK 435
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
566-682 |
5.48e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 566 RLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAKEErlaeekakkkaaaKKMEEVEARRKQEEEA 645
Cdd:PRK00409 524 SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE-------------AQQAIKEAKKEADEII 590
|
90 100 110
....*....|....*....|....*....|....*..
gi 767968084 646 RRLRWLQQEEEERRHQELLQkkkeEEQERLRKAAEAK 682
Cdd:PRK00409 591 KELRQLQKGGYASVKAHELI----EARKRLNKANEKK 623
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
525-615 |
5.61e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 525 PLRMDPKCSFVEKERQRLENLRRKEEAEQLRRQKVEEdKRRRLEEVKlKREERLRKVLQARERVEQMKEEKKKQIEQKFA 604
Cdd:PRK02224 460 PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRE 537
|
90
....*....|.
gi 767968084 605 QIDEKTEKAKE 615
Cdd:PRK02224 538 RAEELRERAAE 548
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
538-674 |
6.03e-03 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 38.48 E-value: 6.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 538 ERQRLENLRRKEEaEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQIDEKTEKAKEER 617
Cdd:pfam05672 18 EKRRQAREQRERE-EQERLEKEEEERLRKEELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAEEREQREQEEQ 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 767968084 618 LAEEKAKKkaaakkmeevEARRKQEEEARRLRwlqqeeeeRRHQELLQKKKEEEQER 674
Cdd:pfam05672 97 ERLQKQKE----------EAEAKAREEAERQR--------QEREKIMQQEEQERLER 135
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
142-513 |
6.24e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 40.28 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 142 SSPTPE------SPTMLTKKPEDNHTqcqlvpvveigisERQNAEQHVTQLMSTEPLPRTLSPTPAsATAPTSQGIPTSD 215
Cdd:pfam05109 474 TSPTPAgttsgaSPVTPSPSPRDNGT-------------ESKAPDMTSPTSAVTTPTPNATSPTPA-VTTPTPNATSPTL 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 216 EESTPKKSKARILESITVSSLMATPQDPKGQGVGTGRSASKLRIAQVSPGPrDSPAFPDSPWRERVLAPILPDNFSTPTG 295
Cdd:pfam05109 540 GKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNA-TSPTVGETSPQANTTNHTLGGTSSTPVV 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 296 SrtdsQSVRHSPIAPSSPSPQVLAQKYSLVAKQESVVrraSRRLAKKTAEEPAASGRIICHSYLERLLNVEVPQKVGSEQ 375
Cdd:pfam05109 619 T----SPPKNATSAVTTGQHNITSSSTSSMSLRPSSI---SETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTST 691
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 376 KEPPEEAEPVAAAEPEVPENNGNNSWPHNDTEIANSTPNPKPAASSPETPSAGQQEAKTDQADGPREPPQSARRKRSYKQ 455
Cdd:pfam05109 692 HHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHG 771
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767968084 456 AVSELDEEQHLEDEElQPPRSK---TPSSPCPASKVVRPLRTFLH---TVQRNQMLMTPTSAPR 513
Cdd:pfam05109 772 ARTSTEPTTDYGGDS-TTPRTRynaTTYLPPSTSSKLRPRWTFTSppvTTAQATVPVPPTSQPR 834
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
534-617 |
6.34e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 534 FVEKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLqarERVEQMKEEKKKQIEQKFAQIDEKTEKA 613
Cdd:PRK11448 134 FVPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVAL---EGLAAELEEKQQELEAQLEQLQEKAAET 210
|
....
gi 767968084 614 KEER 617
Cdd:PRK11448 211 SQER 214
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
535-617 |
9.29e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 9.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 535 VEKERQRLENLR--------RKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEKKKQIEQKFAQI 606
Cdd:COG1579 75 IKKYEEQLGNVRnnkeyealQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
90
....*....|.
gi 767968084 607 DEKTEKAKEER 617
Cdd:COG1579 155 EAELEELEAER 165
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
525-682 |
9.78e-03 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 38.53 E-value: 9.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 525 PLRMDPKCSFVEKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEE----VKLKREERLRKVL---QARERVEQMKEEKKK 597
Cdd:pfam13904 12 EKQPEEESSKHRVPSLSLDSSSQSSSLTYARKLEGLKLERQPLEAyenwLAAKQRQRQKELQaqkEEREKEEQEAELRKR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767968084 598 QIEQKFAQ-IDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRL--RWLQQEEEerrhqeLLQKKKEEEQER 674
Cdd:pfam13904 92 LAKEKYQEwLQRKARQQTKKREESHKQKAAESASKSLAKPERKVSQEEAKEVlqEWERKKLE------QQQRKREEEQRE 165
|
....*...
gi 767968084 675 LRKAAEAK 682
Cdd:pfam13904 166 QLKKEEEE 173
|
|
| |
