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Conserved domains on  [gi|767904447|ref|XP_011539811|]
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nuclear autoantigenic sperm protein isoform X2 [Homo sapiens]

Protein Classification

TPR_12 and SHNi-TPR domain-containing protein( domain architecture ID 12139966)

TPR_12 and SHNi-TPR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 544-581 4.40e-09

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


:

Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 52.45  E-value: 4.40e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767904447  544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH 581
Cdd:pfam10516   1 ADVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
TPR_12 pfam13424
Tetratricopeptide repeat;
542-618 8.45e-08

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.08  E-value: 8.45e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767904447  542 YAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-518 8.44e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 8.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   218 GAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQ--EECREKGGQEKQGEVivsieekPKEVSEEQPVVTlEKQGTAV 295
Cdd:TIGR00927  633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEqeGETETKGENESEGEI-------PAERKGEQEGEG-EIEAKEA 704

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   296 EVEAESLDPTVKPVDVGGDEPEEKVVTSENEAGKAVLEQLVGQEvppAEESPEVTTEAAEASAVEAGSEVSEKPGQEApv 375
Cdd:TIGR00927  705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE---AEGKHEVETEGDRKETEHEGETEAEGKEDED-- 779

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   376 lpkdgavngpsvvgdqtpiEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEESEAAGDGVDTKVAQGATEKSPE 455
Cdd:TIGR00927  780 -------------------EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAE 840

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767904447   456 DKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMpndsvlENKSLQENEEEEIGNLE 518
Cdd:TIGR00927  841 NQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE------EEEEEEEEENEEPLSLE 897
 
Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 544-581 4.40e-09

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 52.45  E-value: 4.40e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767904447  544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH 581
Cdd:pfam10516   1 ADVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
TPR_12 pfam13424
Tetratricopeptide repeat;
542-618 8.45e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.08  E-value: 8.45e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767904447  542 YAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
544-646 1.29e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRllaethyqLGLAYGYNSQYDEAVAQFSKSIEVIEN-RMAV 622
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN--------RGIALYYLGRYELAIADLEKALELDPNdPERA 178

                         90       100
                 ....*....|....*....|....
gi 767904447 623 LNEQVKEAEgssAEYKKEIEELKE 646
Cdd:COG4785  179 LWLYLAERK---LDPEKALALLLE 199
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 544-614 8.11e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 8.11e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767904447 544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAhdrllaetHYQLGLAYGYNSQYDEAVAQFSKSIE 614
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA--------LNNLGNALQDLGRLEEAIAAYRRALE 208
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-518 8.44e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 8.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   218 GAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQ--EECREKGGQEKQGEVivsieekPKEVSEEQPVVTlEKQGTAV 295
Cdd:TIGR00927  633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEqeGETETKGENESEGEI-------PAERKGEQEGEG-EIEAKEA 704

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   296 EVEAESLDPTVKPVDVGGDEPEEKVVTSENEAGKAVLEQLVGQEvppAEESPEVTTEAAEASAVEAGSEVSEKPGQEApv 375
Cdd:TIGR00927  705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE---AEGKHEVETEGDRKETEHEGETEAEGKEDED-- 779

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   376 lpkdgavngpsvvgdqtpiEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEESEAAGDGVDTKVAQGATEKSPE 455
Cdd:TIGR00927  780 -------------------EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAE 840

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767904447   456 DKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMpndsvlENKSLQENEEEEIGNLE 518
Cdd:TIGR00927  841 NQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE------EEEEEEEEENEEPLSLE 897
PTZ00121 PTZ00121
MAEBL; Provisional
 143-518 4.41e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 4.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  143 EELREQVYDAMGEKEEAKKTEDKSLAKPETDKEQDSEMEKGGREdmdISKSAEEPQEKvdltlDWLTETSEEAKGGA--- 219
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA---AKKKAEEKKKA-----DEAKKKAEEDKKKAdel 1410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  220 --APEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEKQGEVIVSIEEKPKEVSEEQPVVTLEKQGTAVEV 297
Cdd:PTZ00121 1411 kkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  298 EAESLDPTVKPVDVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEvtTEAAEASAVEAGSEVSEKPGQEAPVLP 377
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK--AEEKKKADELKKAEELKKAEEKKKAEE 1568

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  378 KDGAVNGPSVVGDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEE---SEAAGDGVDTKVAQGATE--- 451
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkAEEEKKKVEQLKKKEAEEkkk 1648

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767904447  452 ----KSPEDKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLQENEEEEIGNLE 518
Cdd:PTZ00121 1649 aeelKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 378-678 1.64e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   378 KDGAVNGPSVVGDQTPIEPQTSIERLTETKDgsGLEEKVRAKlvpSQEETKLSVEESEAAGDGVDT-KVAQGATEKSPED 456
Cdd:TIGR02168  657 PGGVITGGSAKTNSSILERRREIEELEEKIE--ELEEKIAEL---EKALAELRKELEELEEELEQLrKELEELSRQISAL 731

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   457 KVQIAANEETQEREEQMKEGEETEGSEEDDK--ENDKTEEMPNDSVLENKSLQENEEEEIGNLELAWdmldlakiifkrq 534
Cdd:TIGR02168  732 RKDLARLEAEVEQLEERIAQLSKELTELEAEieELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL------------- 798

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   535 ETKEAQLYAAQAhlKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIE 614
Cdd:TIGR02168  799 KALREALDELRA--ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767904447   615 VIENRMAVLNEQVKEAEgssAEYKKEIEELKELLPEIREKIEDAKESQRSGNVAELALKATLVE 678
Cdd:TIGR02168  877 ALLNERASLEEALALLR---SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 526-624 2.08e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.66  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 526 LAKIIFK----RQETKEAQLY-----AAQAHlklGEvsvesenYVQAVEEFQSCLNLQEqylEAHDRllAETHYQLGLAY 596
Cdd:PRK02603  18 MADLILKilpiNKKAKEAFVYyrdgmSAQAD---GE-------YAEALENYEEALKLEE---DPNDR--SYILYNMGIIY 82

                         90       100
                 ....*....|....*....|....*...
gi 767904447 597 GYNSQYDEAVAQFSKSIEVIENRMAVLN 624
Cdd:PRK02603  83 ASNGEHDKALEYYHQALELNPKQPSALN 110
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 586-618 2.74e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 2.74e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767904447   586 AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
SHNi-TPR pfam10516
SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted ...
 544-581 4.40e-09

SHNi-TPR; SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.


Pssm-ID: 402238 [Multi-domain]  Cd Length: 38  Bit Score: 52.45  E-value: 4.40e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 767904447  544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH 581
Cdd:pfam10516   1 ADVYDLLGEISLENENFPQAVTDLRKALELREELLPPE 38
TPR_12 pfam13424
Tetratricopeptide repeat;
542-618 8.45e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.08  E-value: 8.45e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767904447  542 YAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
544-646 1.29e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRllaethyqLGLAYGYNSQYDEAVAQFSKSIEVIEN-RMAV 622
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN--------RGIALYYLGRYELAIADLEKALELDPNdPERA 178

                         90       100
                 ....*....|....*....|....
gi 767904447 623 LNEQVKEAEgssAEYKKEIEELKE 646
Cdd:COG4785  179 LWLYLAERK---LDPEKALALLLE 199
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
501-614 5.87e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 5.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 501 LENKSLQENEEEEIGNLELAWDMLDLAKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYlea 580
Cdd:COG4785   30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL--- 106

                         90       100       110
                 ....*....|....*....|....*....|....
gi 767904447 581 hdrllAETHYQLGLAYGYNSQYDEAVAQFSKSIE 614
Cdd:COG4785  107 -----AEAYNNRGLAYLLLGDYDAALEDFDRALE 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 544-614 8.11e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 8.11e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767904447 544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAhdrllaetHYQLGLAYGYNSQYDEAVAQFSKSIE 614
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA--------LNNLGNALQDLGRLEEAIAAYRRALE 208
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 518-650 6.17e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 6.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 518 ELAWDMLDLAKIIFKRQETKEAQLYA----------AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAhdrllae 587
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLekaleldpdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA------- 74

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767904447 588 tHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNE--QVKEAEGSSAEYKKEIEELKELLPE 650
Cdd:COG4783   75 -RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRlaRAYRALGRPDEAIAALEKALELDPD 138
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 218-518 8.44e-05

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 46.14  E-value: 8.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   218 GAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQ--EECREKGGQEKQGEVivsieekPKEVSEEQPVVTlEKQGTAV 295
Cdd:TIGR00927  633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEqeGETETKGENESEGEI-------PAERKGEQEGEG-EIEAKEA 704

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   296 EVEAESLDPTVKPVDVGGDEPEEKVVTSENEAGKAVLEQLVGQEvppAEESPEVTTEAAEASAVEAGSEVSEKPGQEApv 375
Cdd:TIGR00927  705 DHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE---AEGKHEVETEGDRKETEHEGETEAEGKEDED-- 779

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   376 lpkdgavngpsvvgdqtpiEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEESEAAGDGVDTKVAQGATEKSPE 455
Cdd:TIGR00927  780 -------------------EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAE 840

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767904447   456 DKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMpndsvlENKSLQENEEEEIGNLE 518
Cdd:TIGR00927  841 NQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE------EEEEEEEEENEEPLSLE 897
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 515-648 1.19e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 1.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 515 GNLELAWDMLDLAKIIFkrQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHdRLLAETHYQLGl 594
Cdd:COG2956   49 GNLYRRRGEYDRAIRIH--QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL-RLLAEIYEQEG- 124

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 767904447 595 aygynsQYDEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSaEYKKEIEELKELL 648
Cdd:COG2956  125 ------DWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-DYDEAIEALEKAL 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
544-614 1.52e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 1.52e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767904447 544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYleahdrllAETHYQLGLAYGYNSQYDEAVAQFSKSIE 614
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--------AEALYNLGLAYLRLGRYEEALADYEQALE 70
PTZ00121 PTZ00121
MAEBL; Provisional
 143-518 4.41e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 4.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  143 EELREQVYDAMGEKEEAKKTEDKSLAKPETDKEQDSEMEKGGREdmdISKSAEEPQEKvdltlDWLTETSEEAKGGA--- 219
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA---AKKKAEEKKKA-----DEAKKKAEEDKKKAdel 1410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  220 --APEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEKQGEVIVSIEEKPKEVSEEQPVVTLEKQGTAVEV 297
Cdd:PTZ00121 1411 kkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  298 EAESLDPTVKPVDVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEvtTEAAEASAVEAGSEVSEKPGQEAPVLP 377
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK--AEEKKKADELKKAEELKKAEEKKKAEE 1568

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  378 KDGAVNGPSVVGDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKLSVEE---SEAAGDGVDTKVAQGATE--- 451
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkAEEEKKKVEQLKKKEAEEkkk 1648

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767904447  452 ----KSPEDKVQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLQENEEEEIGNLE 518
Cdd:PTZ00121 1649 aeelKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 503-648 5.53e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 5.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 503 NKSLQENEEEEIGNLELAWD-----MLDLAKIIFKRQETKEAqlYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQY 577
Cdd:COG2956   66 QKLLERDPDRAEALLELAQDylkagLLDRAEELLEKLLELDP--DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN 143

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767904447 578 leahdrllAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNE--QVKEAEGssaEYKKEIEELKELL 648
Cdd:COG2956  144 --------AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLlaELYLEQG---DYEEAIAALERAL 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 493-624 6.40e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.06  E-value: 6.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 493 EEMPNDSVLENKSLQENEEEEIGNLELAWDMLDLAKIIFKRQETKEA-QLYA---------AQAHLKLGEVSVESENYVQ 562
Cdd:COG3914   51 LAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEAlALYRralalnpdnAEALFNLGNLLLALGRLEE 130

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767904447 563 AVEEFQSCLNLQEQYLEAHdrllaethYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLN 624
Cdd:COG3914  131 ALAALRRALALNPDFAEAY--------LNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
516-663 7.13e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 7.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 516 NLELAWDMLDLAKIIFKRQETKEA-QLYA---------AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYleahdrll 585
Cdd:COG0457   72 DPDDAEALNNLGLALQALGRYEEAlEDYDkaleldpddAEALYNLGLALLELGRYDEAIEAYERALELDPDD-------- 143

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767904447 586 AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSAEYKKEIEELKELLPEIREKIEDAKESQR 663
Cdd:COG0457  144 ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 544-648 9.35e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 9.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 544 AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHdRLLAETHYQLGLaygynsqYDEAVAQFSKSIEVIENRMAVL 623
Cdd:COG2956   42 VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLKAGL-------LDRAEELLEKLLELDPDDAEAL 113

                         90       100
                 ....*....|....*....|....*..
gi 767904447 624 NEQVK--EAEGssaEYKKEIEELKELL 648
Cdd:COG2956  114 RLLAEiyEQEG---DWEKAIEVLERLL 137
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 378-678 1.64e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   378 KDGAVNGPSVVGDQTPIEPQTSIERLTETKDgsGLEEKVRAKlvpSQEETKLSVEESEAAGDGVDT-KVAQGATEKSPED 456
Cdd:TIGR02168  657 PGGVITGGSAKTNSSILERRREIEELEEKIE--ELEEKIAEL---EKALAELRKELEELEEELEQLrKELEELSRQISAL 731

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   457 KVQIAANEETQEREEQMKEGEETEGSEEDDK--ENDKTEEMPNDSVLENKSLQENEEEEIGNLELAWdmldlakiifkrq 534
Cdd:TIGR02168  732 RKDLARLEAEVEQLEERIAQLSKELTELEAEieELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL------------- 798

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   535 ETKEAQLYAAQAhlKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIE 614
Cdd:TIGR02168  799 KALREALDELRA--ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767904447   615 VIENRMAVLNEQVKEAEgssAEYKKEIEELKELLPEIREKIEDAKESQRSGNVAELALKATLVE 678
Cdd:TIGR02168  877 ALLNERASLEEALALLR---SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 520-630 1.92e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 520 AWDMLdlAKIIFKRQETKEA-QLYA---------AQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAhdrllaetH 589
Cdd:COG4235   19 GWLLL--GRAYLRLGRYDEAlAAYEkalrldpdnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA--------L 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 767904447 590 YQLGLAYGYNSQYDEAVAQFSKSIEVIEN--RMAVLNEQVKEA 630
Cdd:COG4235   89 YLLGLAAFQQGDYAEAIAAWQKLLALLPAdaPARLLEASIAEA 131
TPR_1 pfam00515
Tetratricopeptide repeat;
586-618 2.01e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 2.01e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 767904447  586 AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 526-624 2.08e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.66  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 526 LAKIIFK----RQETKEAQLY-----AAQAHlklGEvsvesenYVQAVEEFQSCLNLQEqylEAHDRllAETHYQLGLAY 596
Cdd:PRK02603  18 MADLILKilpiNKKAKEAFVYyrdgmSAQAD---GE-------YAEALENYEEALKLEE---DPNDR--SYILYNMGIIY 82

                         90       100
                 ....*....|....*....|....*...
gi 767904447 597 GYNSQYDEAVAQFSKSIEVIENRMAVLN 624
Cdd:PRK02603  83 ASNGEHDKALEYYHQALELNPKQPSALN 110
PTZ00121 PTZ00121
MAEBL; Provisional
 139-666 2.47e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 2.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  139 EEAREELREQVYDAMGEKEEAKKTEDKSlaKPETDKEQDSEMEKGGredmDISKSAEEPQEKVDLtldwLTETSEEAKGG 218
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKK--KADEAKKKAEEAKKAD----EAKKKAEEAKKKADA----AKKKAEEAKKA 1344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  219 A-APEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEKQGEVIVSIEEKPKEVSEEQPVVTLEKQGTAvev 297
Cdd:PTZ00121 1345 AeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD--- 1421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  298 EAESLDPTVKPVDVGGDEPEEKvvTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEAGSEVSEKPGQEApvlp 377
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA---- 1495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  378 KDGAVNGPSVVGDQTPIEPQTSIERLTETKDGSGLEEKVRAKLVPSQEETKlSVEESEAAGDGVDTKVAQGATEKSPEDK 457
Cdd:PTZ00121 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK-KADELKKAEELKKAEEKKKAEEAKKAEE 1574

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  458 VQIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLQENEEEEIgnlelawdmldlakiifkRQETK 537
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE------------------KKKVE 1636

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447  538 EAQLYAAQAHLKLGEV-SVESENYVQAVEEFQSClnlQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVI 616
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELkKAEEENKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 767904447  617 ENRMAvlnEQVKEAEgssAEYKKEIEELKELLPEIREKIEDAKESQRSGN 666
Cdd:PTZ00121 1714 EKKKA---EELKKAE---EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 586-618 2.74e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 2.74e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 767904447   586 AETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 542-611 3.08e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 3.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 542 YAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQyleahDRLLAETHYQLGLAYGYNSQYDEAVAQFSK 611
Cdd:COG1729   28 LAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD-----SPKAPDALLKLGLSYLELGDYDKARATLEE 92
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 138-348 4.56e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 40.36  E-value: 4.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   138 DEEAREELREQVYDAMGEKEEAKKTEDKSLAKPETDKEQDSEMEKGGREDMDISKSAEEPQEKVDLTLDWLTETSEEAKG 217
Cdd:TIGR00927  692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETE 771

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   218 GAAPEGPNEAEVTSGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEKQGEVIVSIEEKPKEVSEEqpvVTLEKQGTAVEV 297
Cdd:TIGR00927  772 AEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQE---LNAENQGEAKQD 848

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   298 EaesldptvKPVDVGG---------DEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPE 348
Cdd:TIGR00927  849 E--------KGVDGGGgsdggdseeEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPE 900
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 526-646 4.67e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 4.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 526 LAKIIFKRQETKEAQLYAAQA----------HLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRlLAETHYQLGla 595
Cdd:COG2956  150 LAELYLEQGDYDEAIEALEKAlkldpdcaraLLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR-LAELYEKLG-- 226

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 767904447 596 ygynsQYDEAVAQFSKSIEVIENRMAVLN--EQVKEAEGSSAEYKKEIEELKE 646
Cdd:COG2956  227 -----DPEEALELLRKALELDPSDDLLLAlaDLLERKEGLEAALALLERQLRR 274
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 459-681 6.12e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 6.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   459 QIAANEETQEREEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLqENEEEEIGNLELAWDMLDLAKIIFKRQETKE 538
Cdd:TIGR02168  688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL-ARLEAEVEQLEERIAQLSKELTELEAEIEEL 766

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   539 AQlYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEN 618
Cdd:TIGR02168  767 EE-RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767904447   619 RMAVLNEQVKEAEGssaeykkEIEELKELLPEIREKIEDAKESQRSGNVAELALKATLVESST 681
Cdd:TIGR02168  846 QIEELSEDIESLAA-------EIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 500-642 7.19e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 7.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447 500 VLENKSLQENEEEEIGNLELAWDMLDLAKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYle 579
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN-- 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767904447 580 ahdrllAETHYQLGLAYGYNSQYDEAVAQFSKSIE------VIENRMAVLNEQVKEAEGSSAEYKKEIE 642
Cdd:COG5010   88 ------PELYYNLALLYSRSGDKDEAKEYYEKALAlspdnpNAYSNLAALLLSLGQDDEAKAALQRALG 150
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 444-676 8.52e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.67  E-value: 8.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   444 KVAQGATEKSPEDKVQIAANEETQEreEQMKEGEETEGSEEDDKENDKTEEMPNDSVLENKSLQ-ENEEEEIGNLElawD 522
Cdd:TIGR02169  712 SDASRKIGEIEKEIEQLEQEEEKLK--ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDlHKLEEALNDLE---A 786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   523 MLDLAKIifkRQETKEAQlyaaqahlKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAEthyqlglaygYNSQY 602
Cdd:TIGR02169  787 RLSHSRI---PEIQAELS--------KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE----------QRIDL 845

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   603 DEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSAEY-------KKEIEELKELLPEIREKIEDAKESQRSGNVAELALKAT 675
Cdd:TIGR02169  846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLesrlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925


                   .
gi 767904447   676 L 676
Cdd:TIGR02169  926 L 926
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 210-496 8.93e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 39.59  E-value: 8.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   210 ETSEEAKGGAAPEGPNEaEVTSGKPEQEVPDAEEEKSVSGTDVQEECREKGGQEKQGEVIVSIEEKPKEVSEEQPVVTlE 289
Cdd:TIGR00927  658 ENGEESGGEAEQEGETE-TKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIET-G 735

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   290 KQGTAVEVEAESLDPTVKPVDVGGDEPEekvvtSENEAGKAvleqlvgQEVPPAEESPEVTTEAAEASAVEAGSEVSEKP 369
Cdd:TIGR00927  736 EEGEEVEDEGEGEAEGKHEVETEGDRKE-----TEHEGETE-------AEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEH 803

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767904447   370 GQEAPVLPKDGAVNGPSVVGDQTPIEPQTSIERLTETKDGSGLEEKVRAklvpsqeetklsveESEAAGDGVDTkvaqga 449
Cdd:TIGR00927  804 EGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGV--------------DGGGGSDGGDS------ 863

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 767904447   450 tekspEDKvqiaanEETQEREEQMKEGEETEGSEEDDKENDKTEEMP 496
Cdd:TIGR00927  864 -----EEE------EEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWP 899
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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