|
Name |
Accession |
Description |
Interval |
E-value |
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
3-498 |
1.87e-20 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 97.44 E-value: 1.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 3 VDERQMHIEQLGLQSQKVQdltQKLREEEEKLKAITSKSKEDRQKLLKLE------VDFEHKA---SRFSQEHEEMNAKL 73
Cdd:PRK03918 233 LEELKEEIEELEKELESLE---GSKRKLEEKIRELEERIEELKKEIEELEekvkelKELKEKAeeyIKLSEFYEEYLDEL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 74 ANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNS------SLMAEVENLRKRVlemegKDE 147
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeeakAKKEELERLKKRL-----TGL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 148 EITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSEC--TQLHLNLEKEKNLTKDLLNELEVV 225
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvCGRELTEEHRKELLEEYTAELKRI 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 226 KSRVKELECSESRLEKAELSLKDDLTKLKSFTVM--LVDERKNM--------MEKIKQEERKVDGLNKNFKVEQGKVMDV 295
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESELIKLkeLAEQLKELeeklkkynLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 296 tEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKsselscSVDLLKKRLDGIEEVEREITRGRSRKgSELtc 375
Cdd:PRK03918 545 -KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE------SVEELEERLKELEPFYNEYLELKDAE-KEL-- 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 376 peDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEqdkanflsqqleeiKHQIAKNKAIEKG-EVVSQ 454
Cdd:PRK03918 615 --EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--------------EYEELREEYLELSrELAGL 678
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 767942675 455 EAEL-RHRFRLEEAKS--RDLKAEVQALKEKIHELMNKEDQLSQLQV 498
Cdd:PRK03918 679 RAELeELEKRREEIKKtlEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2-537 |
2.86e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 83.96 E-value: 2.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMHIEQLGLQSQKVQDLTQKLREE-EEKLKAITSKSKEDRQ---KLLKLEVDFEHKASRFSqEHEEMNAKLANQE 77
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKElEEVLREINEISSELPElreELEKLEKEVKELEELKE-EIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 78 SHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGEcgnsSLMAEVENLRKRVLEMEgkdEEITKTESQCR 157
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI----KLSEFYEEYLDELREIE---KRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 158 ELRKKLQEEEHHS---KELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKdllnelEVVKSRVKELEC 234
Cdd:PRK03918 325 GIEERIKELEEKEerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP------EKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 235 SESRLEKAELSLKDDLTKLKSftvmLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKvmDVTEKLIEESKKLLKLKSEME 314
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKK----EIKELKKAIEELKKAKGKCPVCGRELTEEHRK--ELLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 315 EKVYNLTRERDELIGKLKSEEEKSSELSCSVDL--LKKRLDGI--EEVEREITRGRSRKGseltcpednKIKELTLEIER 390
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESELIKLKELAEQLkeLEEKLKKYnlEELEKKAEEYEKLKE---------KLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 391 LKKRLQQLEVVEGDLMKTEDEYDQLEQKfrteqdkanflsqqLEEIKHQIAKN--KAIEKGEVVSQEAELRHRFRLE--- 465
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEE--------------LAELLKELEELgfESVEELEERLKELEPFYNEYLElkd 609
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942675 466 -----EAKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNmgqevlnlTKELELSKRYSRA 537
Cdd:PRK03918 610 aekelEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--------EEYLELSRELAGL 678
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
11-529 |
9.38e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 9.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMnAKLANQESHNRQLRLKLVG- 89
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL-ARLEQDIARLEERRRELEEr 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQC--------RELRK 161
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELaeellealRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 162 KLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEK 241
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 242 AELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIE-------------------- 301
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaalaaalqnivvedde 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 302 ---ESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRkgseLTCPED 378
Cdd:COG1196 558 vaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL----VAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 379 NKIKELTLEIERLKKRLQQLEVVEGDLMKTEdeydqleqkfRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEAEL 458
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTG----------GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767942675 459 RHRFRLEEAKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMG---QEVLNLTKELE 529
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeleRELERLEREIE 777
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
80-539 |
1.17e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.57 E-value: 1.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 80 NRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKgecgnssLMAEVENLRKRVLEMEgkdEEITKTESQCREL 159
Cdd:PRK03918 143 SDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEK-------FIKRTENIEELIKEKE---KELEEVLREINEI 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 160 RKKLqeeehhsKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRL 239
Cdd:PRK03918 213 SSEL-------PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 240 EKAElSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVtEKLIEESKKLLKLKSEMEEKVYN 319
Cdd:PRK03918 286 KELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 320 LTRERdeligklkseeekssELSCSVDLLKKRLDG--IEEVEREITRGRSRKgseltcpednkiKELTLEIERLKKRLQQ 397
Cdd:PRK03918 364 YEEAK---------------AKKEELERLKKRLTGltPEKLEKELEELEKAK------------EEIEEEISKITARIGE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 398 LEVVEGDLMKTEDEYDQLEQKFR------TEQDKANFLSQQLEEIkhqiaKNKAIEKGEVVSQEAELRHRFRlEEAKSRD 471
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAKGKCPvcgrelTEEHRKELLEEYTAEL-----KRIEKELKEIEEKERKLRKELR-ELEKVLK 490
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767942675 472 LKAEVQALKEKIHELMNKEDQLSQLQV-DYSVLQQRFMEEENKNKNMGQEVLNLTKELELSKRYSRALR 539
Cdd:PRK03918 491 KESELIKLKELAEQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3-316 |
1.83e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 1.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 3 VDERQMHIEQLGLQSQKVQdltqKLREEEEKLKAITSKSKEDRQKLLKLEVDfEHKASRfsqehEEMNAKLANQESHNRQ 82
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLR----REREKAERYQALLKEKREYEGYELLKEKE-ALERQK-----EAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 83 LRLKLVGLTQRIEELEETNKNLQK-----AEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGK----DEEITKTE 153
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKkikdlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERlaklEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 154 SQCRELRKKLQEEEHHSKELRLEVEKLQKRM----SELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRV 229
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELedlrAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 230 KELECSESRLEKAELSLKDDLTKLKSftvmlvdERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKL 309
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEE-------EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
....*..
gi 767942675 310 KSEMEEK 316
Cdd:TIGR02169 489 QRELAEA 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-277 |
5.50e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 5.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 1 MLVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQ---EHEEMNAKLANQE 77
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 78 SHNRQLRLKLVGLTQRIEELEEtnkNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEgkdEEITKTESQCR 157
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKE---ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE---LQIASLNNEIE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 158 ELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEeafsksksectqLHLNLEKEKNLTKDLLNELEVVKSRVKELECSES 237
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKE------------LQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 767942675 238 RLEKAELSLKDDLTKLKSftvmlvdeRKNMMEKIKQEERK 277
Cdd:TIGR02168 472 EAEQALDAAERELAQLQA--------RLDSLERLQENLEG 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
25-527 |
1.46e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 25 QKLREEEEKLKAITSKSKEDRQKL--LKLEVDFEHKASRFSQEHEEmnAKLANQESHNRQLRLKLVGLTQRIEElEETNK 102
Cdd:PTZ00121 1281 DELKKAEEKKKADEAKKAEEKKKAdeAKKKAEEAKKADEAKKKAEE--AKKKADAAKKKAEEAKKAAEAAKAEA-EAAAD 1357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 103 NLQKAEE--ELQELRDKIAKGECGNSSLMAE----VENLRKRVLEMEGKDEEITKTEsqcrELRKKLQEEEHHSKELRlE 176
Cdd:PTZ00121 1358 EAEAAEEkaEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEEDKKKADELKKAA----AAKKKADEAKKKAEEKK-K 1432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 177 VEKLQKRMSELEKLEEAfsKSKSECTQLHLNLEK---EKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKL 253
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADEA--KKKAEEAKKAEEAKKkaeEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 254 KSFTVMLVDERKNMMEKIKQEE-RKVDGLNKNFKVEQGKVMDVTEKL--IEESKKLLKLKSEMEEKvyNLTRERDELIGK 330
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKKAEEaKKADEAKKAEEKKKADELKKAEELkkAEEKKKAEEAKKAEEDK--NMALRKAEEAKK 1588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 331 LKseeeksselscsvdllKKRldgIEEVEREITRGRSRKGSELTCPEDNKIK-ELTLEIERLKKRLQQL------EVVEG 403
Cdd:PTZ00121 1589 AE----------------EAR---IEEVMKLYEEEKKMKAEEAKKAEEAKIKaEELKKAEEEKKKVEQLkkkeaeEKKKA 1649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 404 DLMKTEDEYDQL---EQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAE----- 475
Cdd:PTZ00121 1650 EELKKAEEENKIkaaEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAeeenk 1729
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 767942675 476 --VQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKE 527
Cdd:PTZ00121 1730 ikAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
95-442 |
1.47e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 95 EELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELR 174
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 175 LEVE-KLQKRMSELEKLEEAFSKSKSECTQL--HLNLEKEKNLTkdllNELEVVKSRVKELECSESRLEKAELSLKDDLT 251
Cdd:TIGR02169 754 ENVKsELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQ----AELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 252 KLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFkveqgkvmdvtEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKL 331
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK-----------EELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 332 KSEEEKSSELSCSVDLLKKRLD----GIEEVEREITR-GRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEgdlM 406
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSelkaKLEALEEELSEiEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVN---M 975
|
330 340 350
....*....|....*....|....*....|....*.
gi 767942675 407 KTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAK 442
Cdd:TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
16-448 |
3.67e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 3.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 16 QSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFE--------------HKASRFSQEHEEMNAKLANQESHNR 81
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeeakakkeelerLKKRLTGLTPEKLEKELEELEKAKE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 82 QLRLKLVGLTQRIEELEETNKNLQKAEEELQElrdkiAKGECG--------------NSSLMAEVENLRKRVLEMEGKDE 147
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKK-----AKGKCPvcgrelteehrkelLEEYTAELKRIEKELKEIEEKER 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 148 EITKTEsqcRELRKKLQEEEHHSKELRL--EVEKLQKRMSE--LEKLEEAfSKSKSECTQLHLNLEKEKNLTKDLLNELE 223
Cdd:PRK03918 477 KLRKEL---RELEKVLKKESELIKLKELaeQLKELEEKLKKynLEELEKK-AEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 224 VVKSRVKELECSESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEES 303
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 304 KKLLKLKSEMEEkvynltrerdeligklkseeeksselscsvdlLKKRLdgiEEVEREITRGRSRKGSELTCPEDNKIKE 383
Cdd:PRK03918 633 EELAETEKRLEE--------------------------------LRKEL---EELEKKYSEEEYEELREEYLELSRELAG 677
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767942675 384 LTLEIERLKKRLQQlevVEGDLMKTEDEYDQLEQKfRTEQDKANFLSQQLEEIKHQIAKNKAIEK 448
Cdd:PRK03918 678 LRAELEELEKRREE---IKKTLEKLKEELEEREKA-KKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-531 |
6.58e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 6.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 15 LQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKllklevdfehKASRFSQEHEEMNAKlANQESHNRQLRLKLVGLTQRI 94
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----------KADEAKKKAEEDKKK-ADELKKAAAAKKKADEAKKKA 1427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 95 EELEETNKNLQKAEE--ELQELRDKIAKGEcgnsslmaEVENLRKrvlemegKDEEITKTEsqcrELRKKlQEEEHHSKE 172
Cdd:PTZ00121 1428 EEKKKADEAKKKAEEakKADEAKKKAEEAK--------KAEEAKK-------KAEEAKKAD----EAKKK-AEEAKKADE 1487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 173 LRLEVEKLQKRMSELEKLEEAfsKSKSEctqlHLNLEKEKNLTKDLLNELEvvKSRVKELECSESRLEKAELSLKDDLTK 252
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEA--KKKAD----EAKKAEEAKKADEAKKAEE--AKKADEAKKAEEKKKADELKKAEELKK 1559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 253 lksftvmlVDERKNMMEKIKQEERKVDGLNKN---FKVEQGKVMDVTEKLIEESK-KLLKLKSEMEEKVynltrERDELI 328
Cdd:PTZ00121 1560 --------AEEKKKAEEAKKAEEDKNMALRKAeeaKKAEEARIEEVMKLYEEEKKmKAEEAKKAEEAKI-----KAEELK 1626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 329 GKLKSEEEKSSELSCSVDLLKKrldgIEEVEREITRGRSRKGSELTCPEDNKIK--ELTLEIERLKKRLQQLEVVEGDLM 406
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKK----AEELKKAEEENKIKAAEEAKKAEEDKKKaeEAKKAEEDEKKAAEALKKEAEEAK 1702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 407 KTEdeydQLEQKFRTEQDKANFLSQQLEE--IKHQIAKNKAIE---KGEVVSQEAE----LRHRFRLEEAKSRDLKAEVQ 477
Cdd:PTZ00121 1703 KAE----ELKKKEAEEKKKAEELKKAEEEnkIKAEEAKKEAEEdkkKAEEAKKDEEekkkIAHLKKEEEKKAEEIRKEKE 1778
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 767942675 478 ALkekIHELMNKEDQLSQLQVDYSVlQQRFMEEEN--KNKNMGQEVLNLTKELELS 531
Cdd:PTZ00121 1779 AV---IEEELDEEDEKRRMEVDKKI-KDIFDNFANiiEGGKEGNLVINDSKEMEDS 1830
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
5-328 |
6.72e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 6.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQLGLQSQKVQdltQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNA--------KLANQ 76
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLK---ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlshsRIPEI 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 77 ESHNRQLRLKLVGLTQRIEELE-ETNKNLQK---AEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEgkdEEITKT 152
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARLREIEqKLNRLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE---EELEEL 873
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 153 ESQCRELRKKLqeeehhsKELRLEVEKLQKRMSELEKLEEafsksksectQLHLNLEKEKNLTKDLLNELEVVKSRVKEL 232
Cdd:TIGR02169 874 EAALRDLESRL-------GDLKKERDELEAQLRELERKIE----------ELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 233 ECSESRLE---KAELSLKDdltklksftvmLVDERKNMMEKIKQEErkvdglnknfkveqgkvmDVTEKLIEESKKLLKL 309
Cdd:TIGR02169 937 EDPKGEDEeipEEELSLED-----------VQAELQRVEEEIRALE------------------PVNMLAIQEYEEVLKR 987
|
330
....*....|....*....
gi 767942675 310 KSEMEEKVYNLTRERDELI 328
Cdd:TIGR02169 988 LDELKEKRAKLEEERKAIL 1006
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
25-447 |
9.05e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.28 E-value: 9.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 25 QKLREEEEKLKAITSKSKEDRQKL----LKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEET 100
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNNQLkdniEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 101 NKNLQKAEEELQELRDKiaKGECGNSSLMAEVENLRKRVLEMEGK----DEEITKTESQCRELRKKLQEEEHHSKELRLE 176
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQisqnNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 177 VEKLQKRMSELEKLEEAFSKS----KSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTK 252
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEiknlESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 253 LKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKL---KSEMEEKVYNLTRERDELIG 329
Cdd:TIGR04523 445 LTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDLTKKISSLKE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 330 KLKSEEEKSSELSCSVDLLKKRLDGIEEV------EREItRGRSRKGSELTCPEDN----------KIKELTLEIERLKK 393
Cdd:TIGR04523 525 KIEKLESEKKEKESKISDLEDELNKDDFElkkenlEKEI-DEKNKEIEELKQTQKSlkkkqeekqeLIDQKEKEKKDLIK 603
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 767942675 394 RL----QQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIE 447
Cdd:TIGR04523 604 EIeekeKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKW 661
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
147-493 |
1.01e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 147 EEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVvk 226
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA-- 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 227 srvkELECSESRLEKAELSLKDDLTKLKSftvmLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKL 306
Cdd:TIGR02168 762 ----EIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 307 LKLKSEMEEKVYNLTRERDEligklkseeeksselscsvdllkkrldgIEEVEREITRGRSRkgseltcpednkIKELTL 386
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSED----------------------------IESLAAEIEELEEL------------IEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 387 EIERLKKRLQQLEVvegDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAK---NKAIEKGEVVSQEAELRHRFR 463
Cdd:TIGR02168 874 ELEALLNERASLEE---ALALLRSELEELSEELRELESKRSELRRELEELREKLAQlelRLEGLEVRIDNLQERLSEEYS 950
|
330 340 350
....*....|....*....|....*....|....
gi 767942675 464 LE----EAKSRDLKAEVQALKEKIHELMNKEDQL 493
Cdd:TIGR02168 951 LTleeaEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
12-511 |
1.31e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 12 QLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLT 91
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 92 QRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQ-CRELRKKLQEEEHHS 170
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEaEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 171 KELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDL 250
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 251 TKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKL----LKLKSEMEEKVYNLTRERDE 326
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagaVAVLIGVEAAYEAALEAALA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 327 LIGKLKSEEEKSSELSCSVDLLKKRL----------------------DGIEEVEREITRGRSRKGSELTCPEDNKIKEL 384
Cdd:COG1196 546 AALQNIVVEDDEVAAAAIEYLKAAKAgratflpldkiraraalaaalaRGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 385 TLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKnkaiEKGEVVSQEAELRHRFRL 464
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE----LAERLAEEELELEEALLA 701
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 767942675 465 EEAKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEE 511
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-586 |
2.19e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 28 REEEEKLKAITSKSKEDRQKLLKLEvdfehKASRFSQEHEEmnAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKA 107
Cdd:PTZ00121 1206 RKAEEERKAEEARKAEDAKKAEAVK-----KAEEAKKDAEE--AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 108 E-EELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTES---QCRELRKKLQEEEHHSKELRLEVEKLQKR 183
Cdd:PTZ00121 1279 KaDELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 184 MSELEKLEEAFSKSKSECTQLHLNLEK---EKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSFTVML 260
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKkaeEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 261 VDERKNMMEKIK---QEERKVDGLNKnfKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEK 337
Cdd:PTZ00121 1439 KAEEAKKADEAKkkaEEAKKAEEAKK--KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 338 SSELSCSVDLLKKrldgIEEvereitrgrSRKGSELTCPEDNKIKELTLEIERLKKrlqqlevvegdlmktEDEYDQLEQ 417
Cdd:PTZ00121 1517 KAEEAKKADEAKK----AEE---------AKKADEAKKAEEKKKADELKKAEELKK---------------AEEKKKAEE 1568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 418 KFRTEQDKANFL-----SQQLEEIKHQIAKNKAIEKGEVVSQEA--ELRHRFRLEEA-KSRDLKAEVQALKEKIHELMNK 489
Cdd:PTZ00121 1569 AKKAEEDKNMALrkaeeAKKAEEARIEEVMKLYEEEKKMKAEEAkkAEEAKIKAEELkKAEEEKKKVEQLKKKEAEEKKK 1648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 490 EDQLSQLQVDYSVLQQRFMEEENKNKNMGQEvlnLTKELELSKRYSRALRPSVNGRRMVdvpvtstgvqtDAVSGEAAEE 569
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEEAKKA-----------EELKKKEAEE 1714
|
570
....*....|....*..
gi 767942675 570 ETPAVFIRKSfQEENHI 586
Cdd:PTZ00121 1715 KKKAEELKKA-EEENKI 1730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
15-480 |
3.73e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 67.10 E-value: 3.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 15 LQSQKVQDLTQKLREEEEKLKAITSKsKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNR--QLRLKLVGLTQ 92
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAEL-QEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEleALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 93 RIEELEETNKNLQKAEEELQELRDKIAKgecgnssLMAEVENLRKRVLEMegKDEEITKTESQCRELRKKLQEEEHHSKE 172
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAE-------LQEELEELLEQLSLA--TEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 173 LRLEVEKLQKRMSELEKLEEAFSKSKSectqlhlnLEKEKNLTkdllneleVVKSRVKELECSESRLEKAELSLKDDLTK 252
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEER--------LKEARLLL--------LIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 253 LKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKL---IEESKKLLKLKSEMEEKVYNLTRERDELig 329
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEEL-- 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 330 kLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRkgseltcpednkiKELTLEIERLKKRLQQLEVVEGDLMKTE 409
Cdd:COG4717 360 -EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEY-------------QELKEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 410 DEyDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKA-IEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALK 480
Cdd:COG4717 426 DE-EELEEELEELEEELEELEEELEELREELAELEAeLEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
5-312 |
6.48e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 6.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQmhIEQLGLQSQKVQDLtQKLREEEEKLKAitskskedRQKLLKLEvDFEHKASRFSQEHEEMNAKLANQESHNRQLR 84
Cdd:COG1196 199 ERQ--LEPLERQAEKAERY-RELKEELKELEA--------ELLLLKLR-ELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 85 LKLVGLTQRIEELEETnknLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCR----ELR 160
Cdd:COG1196 267 AELEELRLELEELELE---LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEeeleELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 161 KKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEK-NLTKDLLNELEVVKSRVKELEcsesRL 239
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAaELAAQLEELEEAEEALLERLE----RL 419
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767942675 240 EKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSE 312
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
90-483 |
8.17e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 8.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELEETNKNLQKAEEELQELRDKIAKgecgNSSLMAEVENLRKRVLEMEGKDEEItktesqcRELRKKLQEEE-- 167
Cdd:TIGR02169 158 IIDEIAGVAEFDRKKEKALEELEEVEENIER----LDLIIDEKRQQLERLRREREKAERY-------QALLKEKREYEgy 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 168 ---HHSKELRLEVEKLQKRMS----ELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLL-NELEVVKSRVKELECSESRL 239
Cdd:TIGR02169 227 ellKEKEALERQKEAIERQLAsleeELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGeEEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 240 EKAELSLKDDLTKLKsftvmlvDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYN 319
Cdd:TIGR02169 307 ERSIAEKERELEDAE-------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 320 LTRERDELigklkseeeksselscsvDLLKKRLDGIEEVEREITRGRSRKGSELTcPEDNKIKELTLEIERLKKRLQQLE 399
Cdd:TIGR02169 380 FAETRDEL------------------KDYREKLEKLKREINELKRELDRLQEELQ-RLSEELADLNAAIAGIEAKINELE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 400 VVEGDLmktEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAK-NKAIEKGEvvSQEAELRHRFRLEEAKSRDLKAEVQA 478
Cdd:TIGR02169 441 EEKEDK---ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRvEKELSKLQ--RELAEAEAQARASEERVRGGRAVEEV 515
|
....*
gi 767942675 479 LKEKI 483
Cdd:TIGR02169 516 LKASI 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-463 |
9.55e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 9.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 66 HEEMNAKLANQESHNRQLRLKLVGLTQRIEELE-----------ETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVEN 134
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEkalaelrkeleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 135 LRKRV----LEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRM----SELEKLEEAFSKSKSECTQLHL 206
Cdd:TIGR02168 745 LEERIaqlsKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELkalrEALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 207 NLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFK 286
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 287 VEQGKVMDVTEKLIEESKKLLKLKSEMEEkvynLTRERDELIGKLKSEEEKSselscsvdllkkrLDGIEEVEREItrgr 366
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEG----LEVRIDNLQERLSEEYSLT-------------LEEAEALENKI---- 963
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 367 srkgseltcpeDNKIKELTLEIERLKKRLQQLEVVEgdlMKTEDEYDQLEQKFRteqdkanFLSQQLEEIkhqiakNKAI 446
Cdd:TIGR02168 964 -----------EDDEEEARRRLKRLENKIKELGPVN---LAAIEEYEELKERYD-------FLTAQKEDL------TEAK 1016
|
410
....*....|....*....
gi 767942675 447 EKGEVVSQE--AELRHRFR 463
Cdd:TIGR02168 1017 ETLEEAIEEidREARERFK 1035
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-327 |
9.55e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 9.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQLglqSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESH---NR 81
Cdd:TIGR02168 674 ERRREIEEL---EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLeerIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 82 QLRLKLVGLTQRIEE----LEETNKNLQKAEEELQELRDKIAKgecgnssLMAEVENLRKRVLEMEgkdEEITKTESQCR 157
Cdd:TIGR02168 751 QLSKELTELEAEIEEleerLEEAEEELAEAEAEIEELEAQIEQ-------LKEELKALREALDELR---AELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 158 ELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEknlTKDLLNELEVVKSRVKELecsES 237
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE---LEALLNERASLEEALALL---RS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 238 RLEKAELSLKDDLTKLKSftvmLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVM----DVTEKLIEESKKLLKLKSEM 313
Cdd:TIGR02168 895 ELEELSEELRELESKRSE----LRRELEELREKLAQLELRLEGLEVRIDNLQERLSeeysLTLEEAEALENKIEDDEEEA 970
|
330
....*....|....
gi 767942675 314 EEKVYNLTRERDEL 327
Cdd:TIGR02168 971 RRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
130-486 |
1.90e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 130 AEVENLRKRVLEMEGKDEEITKtesQCRELRKKLQeeehhskELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLE 209
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEK---ALAELRKELE-------ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 210 KEKNLTKDLLNELEVvksrvkELECSESRLEKAELSLKDDLTKLKSftvmLVDERKNMMEKIKQEERKVDGLNKNFKVEQ 289
Cdd:TIGR02168 747 ERIAQLSKELTELEA------EIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 290 GKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGklkseeeksselscsvdlLKKRLDGIEEVEREITRGRsrk 369
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES------------------LAAEIEELEELIEELESEL--- 875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 370 gseltcpeDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAI--E 447
Cdd:TIGR02168 876 --------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlsE 947
|
330 340 350
....*....|....*....|....*....|....*....
gi 767942675 448 KGEVVSQEAELRHRFRleEAKSRDLKAEVQALKEKIHEL 486
Cdd:TIGR02168 948 EYSLTLEEAEALENKI--EDDEEEARRRLKRLENKIKEL 984
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
90-545 |
3.88e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 63.63 E-value: 3.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELE-ETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEH 168
Cdd:COG4717 51 LEKEADELFkPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 169 HSKELRLE---------VEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLT--------KDLLNELEVVKSRVKE 231
Cdd:COG4717 131 YQELEALEaelaelperLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 232 LecsESRLEKAELSLKDDLTKLKSFTVMLVDERKNmmEKIKQEERK------------VDGLNKNFKVEQGKVMDVTEKL 299
Cdd:COG4717 211 L---EEELEEAQEELEELEEELEQLENELEAAALE--ERLKEARLLlliaaallallgLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 300 I-----EESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRkgselt 374
Cdd:COG4717 286 LallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL------ 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 375 cpednkikELTLEIERLKKRLQQLevVEGDLMKTEDEYDQLEQKFRTEQDkanfLSQQLEEIKHQI-AKNKAIEKGEVVS 453
Cdd:COG4717 360 --------EEELQLEELEQEIAAL--LAEAGVEDEEELRAALEQAEEYQE----LKEELEELEEQLeELLGELEELLEAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 454 QEAELRHRFRLEEAKSRDLKAEVQALKEKIHELmnkEDQLSQLQVD--YSVLQQRFMEEENKNKNMGQE--VLNLTKEL- 528
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAEL---EAELEQLEEDgeLAELLQELEELKAELRELAEEwaALKLALELl 502
|
490
....*....|....*...
gi 767942675 529 -ELSKRYSRALRPSVNGR 545
Cdd:COG4717 503 eEAREEYREERLPPVLER 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
97-437 |
9.14e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 9.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 97 LEETNKNLQKAEEELQELRDKI----AKGECGNS--SLMAEVENLRKRVL---------EMEGKDEEITKTESQCRELRK 161
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLksleRQAEKAERykELKAELRELELALLvlrleelreELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 162 KLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSEctqlhlnLEKEKNLTKDllnELEVVKSRVKELECSESRLEK 241
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR-------LEQQKQILRE---RLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 242 AELSLKDDLTKLKsftvmlvderknmmEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLT 321
Cdd:TIGR02168 331 KLDELAEELAELE--------------EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 322 RERDELIgklkseeeksselscsvdLLKKRLdgiEEVEREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRL----QQ 397
Cdd:TIGR02168 397 SLNNEIE------------------RLEARL---ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELeelqEE 455
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 767942675 398 LEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIK 437
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
11-537 |
1.18e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRF---SQEHEEMNAKLANQESHNRQLRLKL 87
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELeslEAELEELEAELEELESRLEELEEQL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 88 VGLTQRIEELEE----TNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEM--EGKDEEITKTESQCRELRK 161
Cdd:TIGR02168 382 ETLRSKVAQLELqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAelEELEEELEELQEELERLEE 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 162 KLQEEEHHSKELRL-------EVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLE------------------------- 209
Cdd:TIGR02168 462 ALEELREELEEAEQaldaaerELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlselisvdegyeaaiea 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 210 ------------------------KEKNLTKDLLNELEVVKSRVKELECSESRL-EKAELSLKDDLTKLKSF-------- 256
Cdd:TIGR02168 542 alggrlqavvvenlnaakkaiaflKQNELGRVTFLPLDSIKGTEIQGNDREILKnIEGFLGVAKDLVKFDPKlrkalsyl 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 257 --TVMLVDERKNMMEKIKQE----------------------------------ERKVDGLNKNFKVEQGKVMDVTEKLI 300
Cdd:TIGR02168 622 lgGVLVVDDLDNALELAKKLrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALA 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 301 EESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPE--D 378
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaE 781
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 379 NKIKELTLEIERLKKRLQQLE----VVEGDLMKTEDEYDQLEQKFRTEQDK-------ANFLSQQLEEIKHQIAKNKA-- 445
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALRealdELRAELTLLNEEAANLRERLESLERRiaaterrLEDLEEQIEELSEDIESLAAei 861
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 446 ------------------IEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHELMNK----EDQLSQLQVDYSVL 503
Cdd:TIGR02168 862 eeleelieeleseleallNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKlaqlELRLEGLEVRIDNL 941
|
650 660 670
....*....|....*....|....*....|....
gi 767942675 504 QQRFMEEENKNknmGQEVLNLTKELELSKRYSRA 537
Cdd:TIGR02168 942 QERLSEEYSLT---LEEAEALENKIEDDEEEARR 972
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
63-532 |
3.00e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 63 SQEHEEMNA----KLANQESHNRQLRLK--LVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGecgNSSLMAEVENLR 136
Cdd:TIGR04523 30 KQDTEEKQLekklKTIKNELKNKEKELKnlDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKN---KDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 137 KRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQ--------------KRMSELEKLEEAFSKSKSECT 202
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEkeleklnnkyndlkKQKEELENELNLLEKEKLNIQ 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 203 QLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLN 282
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 283 KNFKVEQGKVMDVTEKLIEESKKLLKLKSEME----EKVYNLTRE-RDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEE 357
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 358 VEREITRGRSRKGS---ELTcPEDNKIKELTLEIERLKKRLQQLEV----VEGDLMKTEDEYDQLEQKFRTEQDKANFLS 430
Cdd:TIGR04523 347 LKKELTNSESENSEkqrELE-EKQNEIEKLKKENQSYKQEIKNLESqindLESKIQNQEKLNQQKDEQIKKLQQEKELLE 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 431 QQLEEIKHQIAKNKAiEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHELMNKEDQLSQlqvDYSVLQQRFMEE 510
Cdd:TIGR04523 426 KEIERLKETIIKNNS-EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK---ELKSKEKELKKL 501
|
490 500
....*....|....*....|..
gi 767942675 511 ENKNKNMGQEVLNLTKELELSK 532
Cdd:TIGR04523 502 NEEKKELEEKVKDLTKKISSLK 523
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
50-493 |
6.63e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 6.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 50 KLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM 129
Cdd:PRK02224 199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 130 AEVENLRKRVLEMEGK-----------DEEITKTESQCRELRKKLQEEEHHSKELRLEVeklQKRMSELEKLEEAFSKSK 198
Cdd:PRK02224 279 EEVRDLRERLEELEEErddllaeagldDADAEAVEARREELEDRDEELRDRLEECRVAA---QAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 199 SECTQLHlnlEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKD---DLTKLKSFTVMLVDERKNMMEKIKQEE 275
Cdd:PRK02224 356 ERAEELR---EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFLEELREERDELREREAELE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 276 RKVDGLNKNFK-----------------VEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERD---ELIGKLKSEE 335
Cdd:PRK02224 433 ATLRTARERVEeaealleagkcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLEraeDLVEAEDRIE 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 336 EKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGsELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQL 415
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAA-ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 416 EqKFRTEQDKANFLSQQLEEIKHQIA---------KNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAE--VQALKEKIH 484
Cdd:PRK02224 592 E-RIRTLLAAIADAEDEIERLREKREalaelnderRERLAEKRERKRELEAEFDEARIEEAREDKERAEeyLEQVEEKLD 670
|
....*....
gi 767942675 485 ELMNKEDQL 493
Cdd:PRK02224 671 ELREERDDL 679
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-486 |
1.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 92 QRIEE----LEETNKNLQKAEEELQELRDKIAkgecgnsSLMAEVENLRK-RVLEMEGKDeeitktesqcRELRKKLQEE 166
Cdd:COG1196 172 ERKEEaerkLEATEENLERLEDILGELERQLE-------PLERQAEKAERyRELKEELKE----------LEAELLLLKL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 167 EHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSL 246
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 247 KDDLTKLKsftvmlvDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDE 326
Cdd:COG1196 315 EERLEELE-------EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 327 LIGKLKSEEEksselscsvdlLKKRLDGIEEVEREITRGRSRKGSELtcpEDNKIKELTLEIERLKKRLQQLEVVEgDLM 406
Cdd:COG1196 388 LLEALRAAAE-----------LAAQLEELEEAEEALLERLERLEEEL---EELEEALAELEEEEEEEEEALEEAAE-EEA 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 407 KTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKgevVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHEL 486
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL---LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
5-555 |
1.25e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLR 84
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMK 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 85 LKLVGltqrieELEETNKNLQKAEEELQELrdkiakgecgnSSLMAEVEN----LRKRVLEMEGKDEEITKTESQCRELR 160
Cdd:pfam15921 440 SECQG------QMERQMAAIQGKNESLEKV-----------SSLTAQLEStkemLRKVVEELTAKKMTLESSERTVSDLT 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 161 KKLQEEEHHSKELRLEVEKLQKR----MSELEKL---EEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKE-- 231
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRvdlkLQELQHLkneGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhg 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 232 LECSESRLEKAEL--SLKDDLTKLKSFTVMlvDERKNmmEKIKQEERKVDGLNKnfkveqgkvmdvteklieESKKLLKL 309
Cdd:pfam15921 583 RTAGAMQVEKAQLekEINDRRLELQEFKIL--KDKKD--AKIRELEARVSDLEL------------------EKVKLVNA 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 310 KSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLdgieevereitRGRSRKGSELTCPEDNKIKELTLEIE 389
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF-----------RNKSEEMETTTNKLKMQLKSAQSELE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 390 RLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGE--VVSQEAELRHRFRLEEA 467
Cdd:pfam15921 710 QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEknKLSQELSTVATEKNKMA 789
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 468 KSRD-LKAEVQALKEKIhelMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKELE------LSKRYSRALRP 540
Cdd:pfam15921 790 GELEvLRSQERRLKEKV---ANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQgpgytsNSSMKPRLLQP 866
|
570
....*....|....*
gi 767942675 541 SVNGRRMVDVPVTST 555
Cdd:pfam15921 867 ASFTRTHSNVPSSQS 881
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-529 |
1.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLkaitskskedrQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNR 81
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKL-----------EELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 82 QLRLKLVGLTQRIEELeetNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEM--EGKDEEITKTESQCREL 159
Cdd:TIGR02168 383 TLRSKVAQLELQIASL---NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAelEELEEELEELQEELERL 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 160 RKKLqeeehhsKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNE---LEVVKSRVKELECSE 236
Cdd:TIGR02168 460 EEAL-------EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNqsgLSGILGVLSELISVD 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 237 SRLEKA-ELSLKDDLTklksftvMLVDERKNMMEKI----KQEE--------------RKVDGLNKNFKVEQGKVMDVTE 297
Cdd:TIGR02168 533 EGYEAAiEAALGGRLQ-------AVVVENLNAAKKAiaflKQNElgrvtflpldsikgTEIQGNDREILKNIEGFLGVAK 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 298 KLIEESKKL--------------------LKLKSEMEEKVYNLTRErDELIGKLKSEEEKSSELScSVDLLKKRldGIEE 357
Cdd:TIGR02168 606 DLVKFDPKLrkalsyllggvlvvddldnaLELAKKLRPGYRIVTLD-GDLVRPGGVITGGSAKTN-SSILERRR--EIEE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 358 VEREITRGRSrkgseltcpednKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQ----LEQKFRTEQDKANFLSQQL 433
Cdd:TIGR02168 682 LEEKIEELEE------------KIAELEKALAELRKELEELEEELEQLRKELEELSRqisaLRKDLARLEAEVEQLEERI 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 434 EEIKHQIAKNKAiEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKI----HELMNKEDQLSQLQVDYSVLQQRFME 509
Cdd:TIGR02168 750 AQLSKELTELEA-EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELkalrEALDELRAELTLLNEEAANLRERLES 828
|
570 580
....*....|....*....|
gi 767942675 510 EENKNKNMGQEVLNLTKELE 529
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIE 848
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
7-328 |
2.05e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.11 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 7 QMHIEQLGLQSQKVQDLTQKLREE----EEKLKAITSKSKEDRQKLLKLEvdfehkaSRFSQEHEEMNAKLANQESHNRQ 82
Cdd:TIGR04523 292 QLKSEISDLNNQKEQDWNKELKSElknqEKKLEEIQNQISQNNKIISQLN-------EQISQLKKELTNSESENSEKQRE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 83 LRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKrvlEMEGKDEEITKTESQCRELRKK 162
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ---EKELLEKEIERLKETIIKNNSE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 163 LQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQlhlNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKA 242
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ---NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 243 ELSLKDDLTKLKSftvmlvdERKNMMEKIKQEERKVDGLNKNFKVEQ-GKVMDVT----EKLIEESKKLLKLKSEMEEKV 317
Cdd:TIGR04523 519 ISSLKEKIEKLES-------EKKEKESKISDLEDELNKDDFELKKENlEKEIDEKnkeiEELKQTQKSLKKKQEEKQELI 591
|
330
....*....|.
gi 767942675 318 YNLTRERDELI 328
Cdd:TIGR04523 592 DQKEKEKKDLI 602
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-448 |
2.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 2.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLE---VDFEHKASRFSQEHEEMNAKLANQES 78
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEaelAEAEEELEELAEELLEALRAAAELAA 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 79 HNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGEcgnSSLMAEVENLRKRVLEMEGKDEEITKTESQCRE 158
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL---EEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 159 LRKKLQEEEHHSKELRLEVEKLQKRMS------------------------------ELEKLEEAF-------------- 194
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEgflegvkaalllaglrglagavavligveaAYEAALEAAlaaalqnivvedde 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 195 ----------SKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVkeLECSESRLEKAELSLKDDLTKLKSFTVMLVDER 264
Cdd:COG1196 558 vaaaaieylkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 265 KNMMEKIKQEERKV----DGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSE 340
Cdd:COG1196 636 LRRAVTLAGRLREVtlegEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 341 LSCSVDLLKKRLDGIEEVEREITRGRSRKGSEL------TCPEDNKIKELTLEIERLKKRLQQLEVVEgdlMKTEDEYDQ 414
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLeeealeELPEPPDLEELERELERLEREIEALGPVN---LLAIEEYEE 792
|
490 500 510
....*....|....*....|....*....|....*
gi 767942675 415 LEQKFrteqdkaNFLSQQLEEIKHQIAK-NKAIEK 448
Cdd:COG1196 793 LEERY-------DFLSEQREDLEEARETlEEAIEE 820
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
668-962 |
2.09e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 58.39 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 668 PDHENSTATLEIT---SPTSEEFFSSTTVIPTlgNQKPRITIIPSpnvMPQKQKSGDTTLGPERAMSPVTITTFSREKTP 744
Cdd:pfam05109 425 PESTTTSPTLNTTgfaAPNTTTGLPSSTHVPT--NLTAPASTGPT---VSTADVTSPTPAGTTSGASPVTPSPSPRDNGT 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 745 ESgRGAFADRPTSPIQIMTV-STSAAPAEIAVSPESQEMPMGRT-----ILKVTPEKQ------TVPTP------VRKYN 806
Cdd:pfam05109 500 ES-KAPDMTSPTSAVTTPTPnATSPTPAVTTPTPNATSPTLGKTsptsaVTTPTPNATsptpavTTPTPnatiptLGKTS 578
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 807 SNANIITTEDNKIHIHLGSQFKRSPGTS----GEGVSPVITVRPVNVTAEKEVSTGTVLRSPRNHLSSRPGASKVTSTIT 882
Cdd:pfam05109 579 PTSAVTTPTPNATSPTVGETSPQANTTNhtlgGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPS 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 883 ITPVTTS------SARGT----------QSVSGQDGSSQRPTPTRIPMSKGMKAGKPVVAA-PGAGNLTK-FEPRAETQS 944
Cdd:pfam05109 659 TSDNSTShmplltSAHPTggenitqvtpASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTkPGEVNVTKgTPPKNATSP 738
|
330
....*....|....*...
gi 767942675 945 MKIELKKSAASSTTSLGG 962
Cdd:pfam05109 739 QAPSGQKTAVPTVTSTGG 756
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
2-308 |
2.11e-08 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 58.55 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMH-IEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLL---KLEVDFEHKASRFSQEHEEmnaklaNQE 77
Cdd:COG5022 783 LRRLVDYElKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKlreTEEVEFSLKAEVLIQKFGR------SLK 856
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 78 SHNRQLRLKlvgltqRIEELEETNKNLQKAEEELQELRDKIAK-------GEC-----------GNSSLMAEVENLRKRV 139
Cdd:COG5022 857 AKKRFSLLK------KETIYLQSAQRVELAERQLQELKIDVKSisslklvNLEleseiielkksLSSDLIENLEFKTELI 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 140 LEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEvEKLQKRMSELEKLEEAFSKSKSECTQLHlNLEKEKNLTKDLL 219
Cdd:COG5022 931 ARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLK-ETSEEYEDLLKKSTILVREGNKANSELK-NFKKELAELSKQY 1008
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 220 NELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSFTVMlVDERKNMMEKIKQEERKVdgLNKNFKVEQGKVMDVTEKL 299
Cdd:COG5022 1009 GALQESTKQLKELPVEVAELQSASKIISSESTELSILKPL-QKLKGLLLLENNQLQARY--KALKLRRENSLLDDKQLYQ 1085
|
....*....
gi 767942675 300 IEESKKLLK 308
Cdd:COG5022 1086 LESTENLLK 1094
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
157-533 |
2.48e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 157 RELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLtkdLLNELEVVKSRVKELECSE 236
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 237 SRLEKAELSLKDDLTKLKSftvmlvdERKNMMEKIKQEERKVDGLnknfkvEQGKVMDVTEKLIEESKKLLKLKSEMEEK 316
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEA-------RIEELEEDLHKLEEALNDL------EARLSHSRIPEIQAELSKLEEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 317 VYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRldgIEEVEREITRGRSRKGseltcpednkikELTLEIERLKKRLQ 396
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ---IKSIEKEIENLNGKKE------------ELEEELEELEAALR 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 397 QLEVVEGDLMKtedEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAiEKGEVVSQEAELRHRFRL------EEAKSR 470
Cdd:TIGR02169 879 DLESRLGDLKK---ERDELEAQLRELERKIEELEAQIEKKRKRLSELKA-KLEALEEELSEIEDPKGEdeeipeEELSLE 954
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767942675 471 DLKAEVQALKEKIHEL----MNKEDQLSQLQVDYSVLQQRFM--EEENKnknmgqEVLNLTKELELSKR 533
Cdd:TIGR02169 955 DVQAELQRVEEEIRALepvnMLAIQEYEEVLKRLDELKEKRAklEEERK------AILERIEEYEKKKR 1017
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
12-539 |
2.90e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 2.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 12 QLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLT 91
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTIC 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 92 QRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLM-AEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHS 170
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLrTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 171 KELRL---EVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEknlTKDLLNELEVVKSR----VKELECSESRLEKAE 243
Cdd:pfam05483 408 EELKKilaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE---IHDLEIQLTAIKTSeehyLKEVEDLKTELEKEK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 244 L---SLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDglnkNFKVEQGKVMDVTEKLIEeskKLLKLKSEMEEKVYNL 320
Cdd:pfam05483 485 LkniELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEERMLKQIENLEE---KEMNLRDELESVREEF 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 321 TRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKgseltcpeDNKIKELTLEIERLKKR----LQ 396
Cdd:pfam05483 558 IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENK--------NKNIEELHQENKALKKKgsaeNK 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 397 QLEVVEGDLMKTEDEYDQLEQKF----RTEQDKANFLSQQLEEIKHQIAKNKAIEKGEV-VSQEAELRHRFRLeeaksrd 471
Cdd:pfam05483 630 QLNAYEIKVNKLELELASAKQKFeeiiDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVkLQKEIDKRCQHKI------- 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767942675 472 lkAEVQALKEKIHELMNK--EDQLSQLQVDYSVLQQRFMEE---ENKNKNMGQEVLNLTKELELSKRYSRALR 539
Cdd:pfam05483 703 --AEMVALMEKHKHQYDKiiEERDSELGLYKNKEQEQSSAKaalEIELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
551-908 |
3.54e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 57.62 E-value: 3.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 551 PVTSTGVQTDAVSGEAAEEETPAVfirksfQEENHIMSNLRQVGLKKPVERSSVLDRyPPAANELTMRKSWIPWMRKREN 630
Cdd:pfam05109 425 PESTTTSPTLNTTGFAAPNTTTGL------PSSTHVPTNLTAPASTGPTVSTADVTS-PTPAGTTSGASPVTPSPSPRDN 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 631 GpsiTQEKGPRTNSspghPGEVVLSPKQG--QPLHIRVTPDHENSTATLEITSPTSeeffSSTTVIPTLGNQKPRITiIP 708
Cdd:pfam05109 498 G---TESKAPDMTS----PTSAVTTPTPNatSPTPAVTTPTPNATSPTLGKTSPTS----AVTTPTPNATSPTPAVT-TP 565
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 709 SPN-VMPQKQKSGDT---TLGPERAMSPVTITTFSREKTPESGRGAFADRP--TSPIQIMTVS--------TSAAPAEIA 774
Cdd:pfam05109 566 TPNaTIPTLGKTSPTsavTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPvvTSPPKNATSAvttgqhniTSSSTSSMS 645
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 775 VSPESqempMGRTILKVTPEKQTVPTPVRKY-----NSNANIITTEDNKIHIHLGSQFKRSPGTSGEGVSP---VITVRP 846
Cdd:pfam05109 646 LRPSS----ISETLSPSTSDNSTSHMPLLTSahptgGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPgnsSTSTKP 721
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767942675 847 vnvtAEKEVSTGTvlrSPRNHLSSRPGASKVTS--TITITPVTTSSARGTQSVSGQDG-SSQRPT 908
Cdd:pfam05109 722 ----GEVNVTKGT---PPKNATSPQAPSGQKTAvpTVTSTGGKANSTTGGKHTTGHGArTSTEPT 779
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
64-193 |
8.90e-08 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 56.02 E-value: 8.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 64 QEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLqkaEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEME 143
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERL---EAEVEELEAELEEKDERIERLERELSEARSEERREI 461
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 767942675 144 GKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLqKRMSELEKLEEA 193
Cdd:COG2433 462 RKDREISRLDREIERLERELEEERERIEELKRKLERL-KELWKLEHSGEL 510
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
95-316 |
1.02e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 95 EELEETNKNLQKAEEELQELRDKIAkgecgnsSLMAEVENLRKRVLEMEgkdEEITKTESQCRELRKKLQEEEHHSKELR 174
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEK-------ALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 175 LEVEKLQKRMSELekLEEAFSKSKSECTQLHLN----------LEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAEL 244
Cdd:COG4942 97 AELEAQKEELAEL--LRALYRLGRQPPLALLLSpedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 245 SLKDDLTKLKSftvmlvdERKNMMEKIKQEERKVDGLNKNFKVEQGKVmdvtEKLIEESKKLLKLKSEMEEK 316
Cdd:COG4942 175 ELEALLAELEE-------ERAALEALKAERQKLLARLEKELAELAAEL----AELQQEAEELEALIARLEAE 235
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
5-530 |
1.30e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.50 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQ-----LGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESH 79
Cdd:pfam05483 222 EKIQHLEEeykkeINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 80 NRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMegkdeeitktesqcreL 159
Cdd:pfam05483 302 KMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL----------------L 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 160 RKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNL-EKEKnltkdLLNELEVVKSRVKELECSESR 238
Cdd:pfam05483 366 RTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILaEDEK-----LLDEKKQFEKIAEELKGKEQE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 239 L-------EKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNfkveqgkvmdvTEKLIEESKKLLKLKS 311
Cdd:pfam05483 441 LifllqarEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAH-----------CDKLLLENKELTQEAS 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 312 EMeekVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITrgrsRKGSELTCpednkikeltleieRL 391
Cdd:pfam05483 510 DM---TLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFI----QKGDEVKC--------------KL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 392 KKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQiakNKAIEKGEVVSQEaelrhRFRLEEAKSRD 471
Cdd:pfam05483 569 DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQE---NKALKKKGSAENK-----QLNAYEIKVNK 640
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 767942675 472 LKAEVQALKEKIHELMNKEDQLSQlqvDYSVLQQRFMEEENKNKNMGQEVLNLTKELEL 530
Cdd:pfam05483 641 LELELASAKQKFEEIIDNYQKEIE---DKKISEEKLLEEVEKAKAIADEAVKLQKEIDK 696
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3-319 |
1.32e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 3 VDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQK----LLKLEVDFEHKASRFSQEHEEMNAKLAnqes 78
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKkveqLKKKEAEEKKKAEELKKAEEENKIKAA---- 1664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 79 hnrQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKgecgnsslmaeVENLRKRVLEMEGKDEEITKTES---- 154
Cdd:PTZ00121 1665 ---EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-----------AEELKKKEAEEKKKAEELKKAEEenki 1730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 155 QCRELRKKLQEEEHHSKELRLEVE---KLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNL------TKDLLNELEVV 225
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAKKDEEekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmevdkkIKDIFDNFANI 1810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 226 KSRVKELECSESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKlIEESKK 305
Cdd:PTZ00121 1811 IEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEE-IEEADE 1889
|
330
....*....|....*
gi 767942675 306 LLKL-KSEMEEKVYN 319
Cdd:PTZ00121 1890 IEKIdKDDIEREIPN 1904
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
16-204 |
2.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 16 QSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIE 95
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 96 ELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLE------------MEGKDEEITKTESQCRELRKKL 163
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeaealENKIEDDEEEARRRLKRLENKI 981
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 767942675 164 QE---------EEHHSKELRLEVEKLQKR--MSELEKLEEAFSKSKSECTQL 204
Cdd:TIGR02168 982 KElgpvnlaaiEEYEELKERYDFLTAQKEdlTEAKETLEEAIEEIDREARER 1033
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-310 |
2.27e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 16 QSQKVQDLTQKLREEEEKL----KAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKL-ANQESHNRQLRLKLVGL 90
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEEKKKVEQL 1638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 91 TQRIEELEETNKNLQKAEEELQ----ELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTEsqcrELRKKLQEE 166
Cdd:PTZ00121 1639 KKKEAEEKKKAEELKKAEEENKikaaEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE----ELKKKEAEE 1714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 167 EHHSKELR-------LEVEKLQKRMSELEKLEEAFSKSKSECTQL-HLNLEKEKNLTKDLLNELEVVKSRVKELEcsESR 238
Cdd:PTZ00121 1715 KKKAEELKkaeeenkIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIaHLKKEEEKKAEEIRKEKEAVIEEELDEED--EKR 1792
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 239 LEKAELSLKDdltklksftvmLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLK 310
Cdd:PTZ00121 1793 RMEVDKKIKD-----------IFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
9-328 |
4.56e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 9 HIEQLGLQSQKVQDLTQKLREEEEKLKAitSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLanqeshNRQLRLKLV 88
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLA--DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK------EEKEEEKSE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 89 GLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQcRELRKKLQEEEH 168
Cdd:pfam02463 769 LSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEEL-EELALELKEEQK 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 169 HSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRV------KELECSESRLEKA 242
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKlnlleeKENEIEERIKEEA 927
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 243 ELSLKDDLTKLKSFTVMLVDERKnMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEkvynLTR 322
Cdd:pfam02463 928 EILLKYEEEPEELLLEEADEKEK-EENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER----LEE 1002
|
....*.
gi 767942675 323 ERDELI 328
Cdd:pfam02463 1003 EKKKLI 1008
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
43-197 |
6.94e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.46 E-value: 6.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 43 EDRQKLLKLEvDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEetnKNLQKAEEELQELRDKIAK-- 120
Cdd:COG1579 4 EDLRALLDLQ-ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLE---KEIKRLELEIEEVEARIKKye 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 121 ---GECGNS----SLMAEVENLRKRV-------LEMEGKDEEITKTESQCRELRKKLQEE-EHHSKELRLEVEKLQKRMS 185
Cdd:COG1579 80 eqlGNVRNNkeyeALQKEIESLKRRIsdledeiLELMERIEELEEELAELEAELAELEAElEEKKAELDEELAELEAELE 159
|
170
....*....|..
gi 767942675 186 ELEKLEEAFSKS 197
Cdd:COG1579 160 ELEAEREELAAK 171
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-536 |
1.10e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 21 QDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNA----KLANQESHN-RQLRLKLVGLTQRIE 95
Cdd:pfam15921 162 EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhfrSLGSAISKIlRELDTEISYLKGRIF 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 96 ELEETNKNLQ-----KAEEELQELRDK----IAKGECGNSSLMAEVENLRKRVLEMEGKDEEIT-KTESQCRELRKKLQE 165
Cdd:pfam15921 242 PVEDQLEALKsesqnKIELLLQQHQDRieqlISEHEVEITGLTEKASSARSQANSIQSQLEIIQeQARNQNSMYMRQLSD 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 166 EEHHSKELRLEVEKlQKRMSE--LEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELEcSESRLEKAE 243
Cdd:pfam15921 322 LESTVSQLRSELRE-AKRMYEdkIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE-KELSLEKEQ 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 244 LSLKDDLTKLKSFTvmlVDERKNMMEKIKQEERKVDGLNKNFKVE-QGKV---MDVTEKLIEESKKLLKLKSEMEEKVYN 319
Cdd:pfam15921 400 NKRLWDRDTGNSIT---IDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMerqMAAIQGKNESLEKVSSLTAQLESTKEM 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 320 LTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKgseltcpeDNKIKEltleierlkkrLQQLE 399
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV--------DLKLQE-----------LQHLK 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 400 VVEGDLMKTEDEYDQLEQKFrTEQDKA-NFLSQQLEEIKhQIAKNKAIEKGEVVSQEAELR-----HRFRLEE------- 466
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQM-AEKDKViEILRQQIENMT-QLVGQHGRTAGAMQVEKAQLEkeindRRLELQEfkilkdk 615
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 467 --AKSRDLKAEVQALKEKIHELMNKEDQlsQLQVDYSVLQQRfMEEENKNKNMGQEVLNLTKELELSKRYSR 536
Cdd:pfam15921 616 kdAKIRELEARVSDLELEKVKLVNAGSE--RLRAVKDIKQER-DQLLNEVKTSRNELNSLSEDYEVLKRNFR 684
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
9-513 |
1.18e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.74 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 9 HIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHnrqlrlklv 88
Cdd:TIGR00606 668 FITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSI--------- 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 89 gLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRK--------RVLEMEGKDEE------ITKTES 154
Cdd:TIGR00606 739 -IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVcltdvtimERFQMELKDVErkiaqqAAKLQG 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 155 -----QCRELRKKLQEEEHHSKELRLEVEKLQK----RMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVV 225
Cdd:TIGR00606 818 sdldrTVQQVNQEKQEKQHELDTVVSKIELNRKliqdQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 226 KSRVKELECSESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEK-LIEESK 304
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKET 977
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 305 KLLKLKSEMEEKVYNLTRERDELigklkseeeksselscsvDLLKKRLDGIEEVEREITRGRSRKGSEltcpedNKIKEL 384
Cdd:TIGR00606 978 ELNTVNAQLEECEKHQEKINEDM------------------RLMRQDIDTQKIQERWLQDNLTLRKRE------NELKEV 1033
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 385 TLEIERLKKRLQQLEVVEgdlmkTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIaknkaiekgevVSQEAELRH-RFR 463
Cdd:TIGR00606 1034 EEELKQHLKEMGQMQVLQ-----MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI-----------KHFKKELREpQFR 1097
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 767942675 464 LEEAKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQqrfMEEENK 513
Cdd:TIGR00606 1098 DAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMK---MEEINK 1144
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
7-521 |
1.54e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 7 QMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRlK 86
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ-E 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 87 LVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLmaevenLRKRVLEMEGKDEEITKTESQCRELRKKLQEE 166
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP------LCGSCIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 167 EHHSK-------ELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECsESRL 239
Cdd:TIGR00618 538 AQLETseedvyhQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC-EQHA 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 240 EKAELSLKDDLTKL--------KSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKS 311
Cdd:TIGR00618 617 LLRKLQPEQDLQDVrlhlqqcsQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 312 EMEEKVYNLTRERDELIGKLKSEEEKSSELSCS-VDLLKKRLDGIEEVEREITRGRSRKGSELTCPEDNKIKELTLEIER 390
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSlGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQT 776
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 391 LkkrlqqlevvegdlmkteDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIaknkaiekgevvsqEAELRHRFRLEEAKSR 470
Cdd:TIGR00618 777 G------------------AELSHLAAEIQFFNRLREEDTHLLKTLEAEI--------------GQEIPSDEDILNLQCE 824
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 767942675 471 DLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEV 521
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
19-540 |
1.59e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 19 KVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELE 98
Cdd:TIGR00618 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 99 ETN---KNLQKAEEELQELRDKIAKGECGNSSLmaeveNLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRL 175
Cdd:TIGR00618 254 EQLkkqQLLKQLRARIEELRAQEAVLEETQERI-----NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 176 EVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNltkdllnelevvksrVKELECSESRLEKAELSLKDDLTKLKS 255
Cdd:TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS---------------IREISCQQHTLTQHIHTLQQQKTTLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 256 FTVMLvderKNMMEKIKQEERKVDGLNKNFKVEQGKVMdVTEKLIEESKKLLKLKSEMEEKVYNL--------------T 321
Cdd:TIGR00618 394 KLQSL----CKELDILQREQATIDTRTSAFRDLQGQLA-HAKKQQELQQRYAELCAAAITCTAQCeklekihlqesaqsL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 322 RERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPEDNKIKELTLEiERLKKRLQQLEVV 401
Cdd:TIGR00618 469 KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE-QTYAQLETSEEDV 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 402 EGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEAELRHRFRLEEAKSRDL--KAEVQAL 479
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLrkLQPEQDL 627
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767942675 480 KEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKnknmgqEVLNLTKELELSKRYSRALRP 540
Cdd:TIGR00618 628 QDVRLHLQQCSQELALKLTALHALQLTLTQERVR------EHALSIRVLPKELLASRQLAL 682
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
141-475 |
1.94e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 141 EMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRmseLEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLN 220
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE---LEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 221 ELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLI 300
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 301 EESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELtcpEDNK 380
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA---QLLL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 381 IKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEAELRH 460
Cdd:pfam02463 412 ELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
330
....*....|....*
gi 767942675 461 RFRLEEAKSRDLKAE 475
Cdd:pfam02463 492 RQKLEERSQKESKAR 506
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
11-533 |
2.49e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 2.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSqEHEEMNAKLANQEshnRQLRLKLVGL 90
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCA-EAEEMRARLAARK---QELEEILHEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 91 TQRIEELEETNKNLQ----KAEEELQELRDKIAKGECGNSSLM-------AEVENLRKRVLEMEGKDEEITKT----ESQ 155
Cdd:pfam01576 81 ESRLEEEEERSQQLQnekkKMQQHIQDLEEQLDEEEAARQKLQlekvtteAKIKKLEEDILLLEDQNSKLSKErkllEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 156 CRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELevvKSRVKELECS 235
Cdd:pfam01576 161 ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAEL---QAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 236 esrLEKAELSLKDDLTKLKSFTVmlvdERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEE 315
Cdd:pfam01576 238 ---LAKKEEELQAALARLEEETA----QKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELED 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 316 KVyNLTRERDELigklkseeekSSELSCSVDLLKKRLDgieeverEITRGRSRKGSELTCPEDNKIKELTLEIERLKKRL 395
Cdd:pfam01576 311 TL-DTTAAQQEL----------RSKREQEVTELKKALE-------EETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNK 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 396 QQLE----VVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEI--KHQIAKNKAIEKGEVVSQ-EAELR---HRFRLE 465
Cdd:pfam01576 373 ANLEkakqALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELqaRLSESERQRAELAEKLSKlQSELEsvsSLLNEA 452
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767942675 466 EAKSRDLKAEVQALKEKIH---ELMNKEDQ--------LSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKELELSKR 533
Cdd:pfam01576 453 EGKNIKLSKDVSSLESQLQdtqELLQEETRqklnlstrLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
18-243 |
2.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 18 QKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEvdfehkasrfsQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEEL 97
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----------RRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 98 EetnKNLQKAEEELQELRDKIAK-GECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLE 176
Cdd:COG4942 96 R---AELEAQKEELAELLRALYRlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942675 177 VEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELevvKSRVKELECSESRLEKAE 243
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL---QQEAEELEALIARLEAEA 236
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1-529 |
3.29e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 1 MLVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEhKASRFSQEHEEMNAKLanqESHN 80
Cdd:pfam01576 142 LLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK-KEEKGRQELEKAKRKL---EGES 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 81 RQLRLKLVGLTQRIEELEetnKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLE----MEGKDEEITKTESQC 156
Cdd:pfam01576 218 TDLQEQIAELQAQIAELR---AQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISElqedLESERAARNKAEKQR 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 157 RELRKKLQ----EEEHHSKELRLEVEKLQKRMSELEKLEEAF-SKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKE 231
Cdd:pfam01576 295 RDLGEELEalktELEDTLDTTAAQQELRSKREQEVTELKKALeEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKAN 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 232 LECSESRLEKAELSLKDDLTKLKSftvmlvderknmmekikqeeRKVDGLNKNFKVEqGKVMDVTEKLIEESKKllklKS 311
Cdd:pfam01576 375 LEKAKQALESENAELQAELRTLQQ--------------------AKQDSEHKRKKLE-GQLQELQARLSESERQ----RA 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 312 EMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPED--NKIKELTLEIE 389
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDerNSLQEQLEEEE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 390 RLKKRLQ-QLEVVEGDLM----KTEDE---YDQLEQKFRTEQDKANFLSQQLEEikhqiaKNKAIEKGEvvsqeaelRHR 461
Cdd:pfam01576 510 EAKRNVErQLSTLQAQLSdmkkKLEEDagtLEALEEGKKRLQRELEALTQQLEE------KAAAYDKLE--------KTK 575
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 462 FRLEEaKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQE----VLNLTKELE 529
Cdd:pfam01576 576 NRLQQ-ELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREketrALSLARALE 646
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
18-324 |
3.46e-06 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 49.91 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 18 QKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEvdfeHKASRFSQEHEEMNAKLanqeshnRQLRLKLVGLtqrIEEL 97
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELN----EELKELAEKRDELNAQV-------KELREEAQEL---REKR 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 98 EETNKNLQKAEEELQELRDKIakgecgnSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEV 177
Cdd:COG1340 67 DELNEKVKELKEERDELNEKL-------NELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELV 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 178 EKLQKRMSELEKLEEAfsksksectqlhlnlEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSFT 257
Cdd:COG1340 140 EKIKELEKELEKAKKA---------------LEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEA 204
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942675 258 VMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRER 324
Cdd:COG1340 205 DELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELEEKAEE 271
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
109-529 |
3.67e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 109 EELQELRDKIAKGECGNSSL-------MAEVENLRKrvLEMEGKDEEITKTESQCRELR---KKLQEEEHHSKELRLEVE 178
Cdd:TIGR01612 1190 DEIKKLLNEIAEIEKDKTSLeevkginLSYGKNLGK--LFLEKIDEEKKKSEHMIKAMEayiEDLDEIKEKSPEIENEMG 1267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 179 KLQKRMSELEKLEEAFSKSKSECTQLHLN-------LEKEKNLTKDLLNELEVVKSRvKELECSESRLEKAELSLKDDLT 251
Cdd:TIGR01612 1268 IEMDIKAEMETFNISHDDDKDHHIISKKHdenisdiREKSLKIIEDFSEESDINDIK-KELQKNLLDAQKHNSDINLYLN 1346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 252 KLKS-FTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEqgkvMDVTEKLIEESKKLLKL---KSEMEEKVYNltRERDEL 327
Cdd:TIGR01612 1347 EIANiYNILKLNKIKKIIDEVKEYTKEIEENNKNIKDE----LDKSEKLIKKIKDDINLeecKSKIESTLDD--KDIDEC 1420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 328 IGKLKSEEEKSSELSCSVDLLKKRLDGIEE----VEREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEG 403
Cdd:TIGR01612 1421 IKKIKELKNHILSEESNIDTYFKNADENNEnvllLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKD 1500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 404 DLMKTEDEYDQLEQKFRT-EQDKANFLSQQLE-EIKHQIAKNKAiEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKE 481
Cdd:TIGR01612 1501 EADKNAKAIEKNKELFEQyKKDVTELLNKYSAlAIKNKFAKTKK-DSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKF 1579
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 767942675 482 KIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKELE 529
Cdd:TIGR01612 1580 RIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETE 1627
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
4-500 |
4.88e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 4 DERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQL 83
Cdd:COG4913 324 ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 84 RlklvgltqriEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLemegkdEEITKTESQCR---ELR 160
Cdd:COG4913 404 E----------EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA------EALGLDEAELPfvgELI 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 161 KKLQEEEH---------HSKELRLEVEklqkrmselEKLEEAFSKS-KSECTQLHLNLEKEKNLTKDLLNELEVVKSRVK 230
Cdd:COG4913 468 EVRPEEERwrgaiervlGGFALTLLVP---------PEHYAAALRWvNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAG 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 231 ELECSESRLE---KAELSlkddltklKSFTVMLVDERknmmEKIKQEERKV--DGL----------NKNFKVEQGKVM-- 293
Cdd:COG4913 539 KLDFKPHPFRawlEAELG--------RRFDYVCVDSP----EELRRHPRAItrAGQvkgngtrhekDDRRRIRSRYVLgf 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 294 DVTEKLIEESKKLLKLKSEMEEkvynLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDgIEEVEREITRGRSRKGSEL 373
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAE----AEERLEALEAELDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERLD 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 374 TcpEDNKIKELTLEIERLKKRLQQLevvegdlmktEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAknkAIEKGEVVS 453
Cdd:COG4913 682 A--SSDDLAALEEQLEELEAELEEL----------EEELDELKGEIGRLEKELEQAEEELDELQDRLE---AAEDLARLE 746
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 767942675 454 QEAELRHRF------RLEEAKSRDLKAEVQALKEKIHelmNKEDQLSQLQVDY 500
Cdd:COG4913 747 LRALLEERFaaalgdAVERELRENLEERIDALRARLN---RAEEELERAMRAF 796
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2-497 |
6.19e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKaitskskedRQKLLKLEVDFEHKASRFSQEHEEMNAKLaNQESHnr 81
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLK---------KQQLLKQLRARIEELRAQEAVLEETQERI-NRARK-- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 82 qlRLKLVGLTQRIEELEetnknlQKAEEELQELRDKIAKGEcgnsSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRK 161
Cdd:TIGR00618 292 --AAPLAAHIKAVTQIE------QQAQRIHTELQSKMRSRA----KLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRD 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 162 KLQEE----EHHSKELRLE--VEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKsrvKELECS 235
Cdd:TIGR00618 360 AHEVAtsirEISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAK---KQQELQ 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 236 ESRLEKAELSLKDDLTKLKSFTVMLVDERKNMMEKIKQEERKvDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEE 315
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTK-EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNP 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 316 KVYnltrerdeLIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTcPEDNKIKELTLEIERLKKRL 395
Cdd:TIGR00618 516 ARQ--------DIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ-EIQQSFSILTQCDNRSKEDI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 396 QQLEVVEGDLMKTEDEYDQLEQKFRTEQdkanflSQQLEEIKHQIAKNkaiekgEVVSQEAELRHRFRLEEAKSRDLKAE 475
Cdd:TIGR00618 587 PNLQNITVRLQDLTEKLSEAEDMLACEQ------HALLRKLQPEQDLQ------DVRLHLQQCSQELALKLTALHALQLT 654
|
490 500
....*....|....*....|..
gi 767942675 476 VQALKEKIHELMNKEDQLSQLQ 497
Cdd:TIGR00618 655 LTQERVREHALSIRVLPKELLA 676
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
10-244 |
7.75e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 7.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 10 IEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVG 89
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELEETNKN----LQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEME-----GK---------DEEITK 151
Cdd:PRK02224 389 LEEEIEELRERFGDapvdLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEalleaGKcpecgqpveGSPHVE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 152 TESQCRELRKKLQEEehhSKELRLEVEKLQKRMSELEKLEEAFSKsksectqlhlnLEKEKNLTKDLLNELEVVKSRV-- 229
Cdd:PRK02224 469 TIEEDRERVEELEAE---LEDLEEEVEEVEERLERAEDLVEAEDR-----------IERLEERREDLEELIAERRETIee 534
|
250
....*....|....*
gi 767942675 230 KELECSESRLEKAEL 244
Cdd:PRK02224 535 KRERAEELRERAAEL 549
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
11-198 |
9.68e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQ---------EHEEMNAKLANQESHNR 81
Cdd:COG4942 55 KQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllralyrlgRQPPLALLLSPEDFLDA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 82 QLRLKLVG-----LTQRIEELEETNKNLQKAEEELQELRDKIAKgecgnssLMAEVENLRKRV-LEMEGKDEEITKTESQ 155
Cdd:COG4942 135 VRRLQYLKylapaRREQAEELRADLAELAALRAELEAERAELEA-------LLAELEEERAALeALKAERQKLLARLEKE 207
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 767942675 156 CRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEA--FSKSK 198
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAagFAALK 252
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
137-516 |
1.07e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 137 KRVLEMEGKDEEITKTEsqcRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLhLNLEKEKNLTK 216
Cdd:pfam02463 135 YNFLVQGGKIEIIAMMK---PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQE-LKLKEQAKKAL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 217 DLLNELEvvKSRVKELECSESRLEKAELSLKDDLTKLKSftvMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVT 296
Cdd:pfam02463 211 EYYQLKE--KLELEEEYLLYLDYLKLNEERIDLLQELLR---DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 297 EKLIEESKKLLKLKSEMEEKVYNLTRERDEL------IGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKG 370
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLkesekeKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 371 SELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGE 450
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGK 445
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942675 451 VVSQEAELRHRFRLEEAKSRDLK-AEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKN 516
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKkSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVL 512
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
50-427 |
2.35e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 50 KLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKgecgnsslm 129
Cdd:pfam02463 155 RLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY--------- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 130 aeVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLE 209
Cdd:pfam02463 226 --LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 210 KEKNLTKDLLNELEVVKSRVKELecsESRLEKAELSLKDDLTKLKSftvmlVDERKNMMEKIKQEERKVDGLNKNfkvEQ 289
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKA---EKELKKEKEEIEELEKELKE-----LEIKREAEEEEEEELEKLQEKLEQ---LE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 290 GKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSvdllKKRLDGIEEVEREITRGRSRK 369
Cdd:pfam02463 373 EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE----ELEILEEEEESIELKQGKLTE 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 767942675 370 GSELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKAN 427
Cdd:pfam02463 449 EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR 506
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
36-529 |
3.44e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 47.81 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 36 AITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMN-AKLANQESHNRQLRLKlvglTQRIEELEETNKNLQKaeeELQEL 114
Cdd:pfam05557 44 DRESDRNQELQKRIRLLEKREAEAEEALREQAELNrLKKKYLEALNKKLNEK----ESQLADAREVISCLKN---ELSEL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 115 RDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKEL----------RLEVEKLQKRM 184
Cdd:pfam05557 117 RRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELefeiqsqeqdSEIVKNSKSEL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 185 SELEKLEEAFSKSKSECTQLHLN------LEKEKNLTKDLLNELEVVKSRVKELECSESRLE-------KAELSLKDDLT 251
Cdd:pfam05557 197 ARIPELEKELERLREHNKHLNENienkllLKEEVEDLKRKLEREEKYREEAATLELEKEKLEqelqswvKLAQDTGLNLR 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 252 K---LKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKS---EMEEKVYNLTRERD 325
Cdd:pfam05557 277 SpedLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKAlvrRLQRRVLLLTKERD 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 326 ELIGKLKSEEEKSSELSCSVDLLkKRLDGIEEVEREITRGRSRKGSELTCPEDN----KIKELTLEIErLKKRLQQLEVv 401
Cdd:pfam05557 357 GYRAILESYDKELTMSNYSPQLL-ERIEEAEDMTQKMQAHNEEMEAQLSVAEEElggyKQQAQTLERE-LQALRQQESL- 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 402 eGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEAeLRHR-------FRLEEAKSRDLKA 474
Cdd:pfam05557 434 -ADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQGDYDPKKTKV-LHLSmnpaaeaYQQRKNQLEKLQA 511
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 767942675 475 EVQALKEKIHELMNKEDQLSQLQVDYSVLQQRfmeeenknknmgqEVLNLTKELE 529
Cdd:pfam05557 512 EIERLKRLLKKLEDDLEQVLRLPETTSTMNFK-------------EVLDLRKELE 553
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
89-233 |
3.47e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 46.93 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 89 GLTQRIEELEETNKNLQKAEEELQELRDKIAKGecgNSSLMAEVENLRKRVLEMEGKDEEITKtesqcrELRKKLQEEEH 168
Cdd:smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDR---KDALEEELRQLKQLEDELEDCDPTELD------RAKEKLKKLLQ 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767942675 169 HSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDL-LNELEVVKSRVKELE 233
Cdd:smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFtFKEIEKLKEQLKLLQ 284
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
130-244 |
4.27e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 4.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 130 AEVENLRKRVLeMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLE 209
Cdd:PRK12704 49 KEAEAIKKEAL-LEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 767942675 210 KEK----NLTKDLLNELEVV--------KSRV-KELEcSESRLEKAEL 244
Cdd:PRK12704 128 KKEeeleELIEEQLQELERIsgltaeeaKEILlEKVE-EEARHEAAVL 174
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
64-480 |
4.44e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 46.98 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 64 QEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEME 143
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 144 GkdeEITKTESQCRELRKKLQEEEHHSKELRLEvekLQKRMSELEKLEeafsksksecTQLHLNLEKEKNLT---KDLLN 220
Cdd:pfam19220 83 G---ELEELVARLAKLEAALREAEAAKEELRIE---LRDKTAQAEALE----------RQLAAETEQNRALEeenKALRE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 221 ELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSftvmLVDErknMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLI 300
Cdd:pfam19220 147 EAQAAEKALQRAEGELATARERLALLEQENRRLQA----LSEE---QAAELAELTRRLAELETQLDATRARLRALEGQLA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 301 EESKKLLKLKSEMEEKVYNLTRERDELigklkseeeksselSCSVDLLKKRLDGIEEVEREiTRGRSRKGSELTCPEDNK 380
Cdd:pfam19220 220 AEQAERERAEAQLEEAVEAHRAERASL--------------RMKLEALTARAAATEQLLAE-ARNQLRDRDEAIRAAERR 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 381 IKELTLEIERLKKRlqqLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEeikhqiAKNKAIEKGE-----VVSQE 455
Cdd:pfam19220 285 LKEASIERDTLERR---LAGLEADLERRTQQFQEMQRARAELEERAEMLTKALA------AKDAALERAEeriasLSDRI 355
|
410 420
....*....|....*....|....*....
gi 767942675 456 AELRHRFRLE----EAKSRDLKAEVQALK 480
Cdd:pfam19220 356 AELTKRFEVEraalEQANRRLKEELQRER 384
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
11-255 |
5.50e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 5.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNaklanqeshnrqlrlklvgl 90
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT-------------------- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 91 tqriEELEETNKNLQKAEEELQELRDKIAKgecgnssLMAEVENLRKrVLEMEGKDEEITKTESQCRELRKKLQEEEHHS 170
Cdd:PHA02562 241 ----DELLNLVMDIEDPSAALNKLNTAAAK-------IKSKIEQFQK-VIKMYEKGGVCPTCTQQISEGPDRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 171 KELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELEcSESRLEKAELS-LKDD 249
Cdd:PHA02562 309 KELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ-AEFVDNAEELAkLQDE 387
|
....*.
gi 767942675 250 LTKLKS 255
Cdd:PHA02562 388 LDKIVK 393
|
|
| CortBP2 |
pfam09727 |
Cortactin-binding protein-2; This entry is the first approximately 250 residues of ... |
147-265 |
6.13e-05 |
|
Cortactin-binding protein-2; This entry is the first approximately 250 residues of cortactin-binding protein 2. In addition to being a positional candidate for autism this protein is expressed at highest levels in the brain in humans. The human protein has six associated ankyrin repeat domains pfam00023 towards the C-terminus which act as protein-protein interaction domains.
Pssm-ID: 462860 [Multi-domain] Cd Length: 187 Bit Score: 44.90 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 147 EEITKTESQCRELRKKLQEeehhskeLRLEVEKLQKRMS---ELEKLEEAFSKSKSECTQLHLNLEKEKnltkdLLNELE 223
Cdd:pfam09727 80 AELEKLVEKQRETQRRMLE-------QLAAAEKRHRRVIrelEEEKRKHARDTAQGDDFTYLLEKERER-----LKQELE 147
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767942675 224 VVKSRVKELEcseSRLEKAELSLKDDLTKLKSFTVMLVDERK 265
Cdd:pfam09727 148 QEKAQQKRLE---KELKKLLEKLEEELSKQKQIALLLVKERK 186
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
12-536 |
6.15e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 6.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 12 QLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQK----LLKLEVDFEhKASRFSQEHEEMNAKLanqESHNRQLRLKL 87
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKhtqaLEELTEQLE-QAKRNKANLEKAKQAL---ESENAELQAEL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 88 VGLTQRIEELEETNKnlqKAEEELQELRDKIAKGECGN-------SSLMAEVENLRKRVLEMEGKD----EEITKTESQC 156
Cdd:pfam01576 394 RTLQQAKQDSEHKRK---KLEGQLQELQARLSESERQRaelaeklSKLQSELESVSSLLNEAEGKNiklsKDVSSLESQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 157 RELRKKLQEEEHH-----SKELRLEVEK--LQKRMSELEKLEEAFSK-----------SKSECTQLHLNLEKEKNLTKDL 218
Cdd:pfam01576 471 QDTQELLQEETRQklnlsTRLRQLEDERnsLQEQLEEEEEAKRNVERqlstlqaqlsdMKKKLEEDAGTLEALEEGKKRL 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 219 LNELEVVKSRVKELECSESRLEKAELSLKDDLTKLksftVMLVDERKNMMEKIKQEERKVDGLNKNFKVeqgkvmdVTEK 298
Cdd:pfam01576 551 QRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDL----LVDLDHQRQLVSNLEKKQKKFDQMLAEEKA-------ISAR 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 299 LIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRgrSRKGSEltcped 378
Cdd:pfam01576 620 YAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELER--SKRALE------ 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 379 NKIKELTLEIERLKKRLQQLE------VVEGDLMKTEDEYD------QLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAI 446
Cdd:pfam01576 692 QQVEEMKTQLEELEDELQATEdaklrlEVNMQALKAQFERDlqardeQGEEKRRQLVKQVRELEAELEDERKQRAQAVAA 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 447 EK---GEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHELmnKEDQLSQlqvDYSVLQQRfmEEENKNKNMGQEVLN 523
Cdd:pfam01576 772 KKkleLDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQREL--EEARASR---DEILAQSK--ESEKKLKNLEAELLQ 844
|
570
....*....|...
gi 767942675 524 LTKELELSKRYSR 536
Cdd:pfam01576 845 LQEDLAASERARR 857
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
9-189 |
6.49e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 6.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 9 HIEQLGLQSQKVQDLTQKLREEEEKLKaiTSKSKEDRQKLLKL-----EVDFEHKASRFSQEHE------EMNAKLANQE 77
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQ--LEELEQEIAALLAEagvedEEELRAALEQAEEYQElkeeleELEEQLEELL 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 78 SHNRQLrLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKgecgnsslmaevenLRKRVLEMEgKDEEITKTESQCR 157
Cdd:COG4717 416 GELEEL-LEALDEEELEEELEELEEELEELEEELEELREELAE--------------LEAELEQLE-EDGELAELLQELE 479
|
170 180 190
....*....|....*....|....*....|..
gi 767942675 158 ELRKKLQEEEHHSKELRLEVEKLQKRMSELEK 189
Cdd:COG4717 480 ELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
387-509 |
8.96e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 8.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 387 EIERLKKRLQQLEVvegdlmktedEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKnkaiekgEVVSQEAELRHRFRLEE 466
Cdd:COG3206 264 VIQQLRAQLAELEA----------ELAELSARYTPNHPDVIALRAQIAALRAQLQQ-------EAQRILASLEAELEALQ 326
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 767942675 467 AKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFME 509
Cdd:COG3206 327 AREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
11-418 |
9.36e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.58 E-value: 9.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLReeeeKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGL 90
Cdd:PTZ00108 1024 GELVITNAKKKDLVKELK----KLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSL 1099
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 91 TQriEELEETNKNLQKAEEELQELRDKiakgecgnsslmaEVENLRKRVLEmegkdeeitktesqcrELRKKLQEEEHHS 170
Cdd:PTZ00108 1100 TK--EKVEKLNAELEKKEKELEKLKNT-------------TPKDMWLEDLD----------------KFEEALEEQEEVE 1148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 171 KELRLEVEKLQKRmselekleEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRvKELECSESRLEKAELSLKDDL 250
Cdd:PTZ00108 1149 EKEIAKEQRLKSK--------TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS-KRVDSDEKRKLDDKPDNKKSN 1219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 251 TKLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGK 330
Cdd:PTZ00108 1220 SSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGG 1299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 331 LKSEEEKSSelscSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTED 410
Cdd:PTZ00108 1300 SKPSSPTKK----KVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDD 1375
|
....*...
gi 767942675 411 EYDQLEQK 418
Cdd:PTZ00108 1376 SEDEDDED 1383
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
28-524 |
1.26e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 28 REEEEKLKAIT---SKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQES--HNRQLRLKLVGLtQRIEELEETNK 102
Cdd:TIGR00606 315 REKERELVDCQrelEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSliQSLATRLELDGF-ERGPFSERQIK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 103 NLQKAEEELQELRDKIAKGECGN--SSLMAEVENLRKRVLEMEG-------KDEEITKTESQCRELRKKLQEEEHHSKEL 173
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADlqSKERLKQEQADEIRDEKKGlgrtielKKEILEKKQEELKFVIKELQQLEGSSDRI 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 174 RLEVEKLQKRMSELEKLEEafsKSKSECtqLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLT-- 251
Cdd:TIGR00606 474 LELDQELRKAERELSKAEK---NSLTET--LKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDkd 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 252 ----KLKSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDEL 327
Cdd:TIGR00606 549 eqirKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 328 IgklkseeeksseLSCSVDLLKKRLDGIEEvEREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMK 407
Cdd:TIGR00606 629 F------------DVCGSQDEESDLERLKE-EIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQE 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 408 TEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQI---AKNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIH 484
Cdd:TIGR00606 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 767942675 485 ELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNL 524
Cdd:TIGR00606 776 TIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKL 815
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
3-276 |
1.34e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.90 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 3 VDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQ 82
Cdd:COG1340 3 TDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 83 LRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGE--CGNSSL-----------MAEVENLRKRVLEMEGKDEEI 149
Cdd:COG1340 83 LNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEwrQQTEVLspeeekelvekIKELEKELEKAKKALEKNEKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 150 TKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSKSEctqLHLNLEKEKNLTKDLLNELEVVKSRV 229
Cdd:COG1340 163 KELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADE---LHKEIVEAQEKADELHEEIIELQKEL 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 767942675 230 KELECSESRLEKAELSLKDDLTKLKSFtvmlvDERKNMMEKIKQEER 276
Cdd:COG1340 240 RELRKELKKLRKKQRALKREKEKEELE-----EKAEEIFEKLKKGEK 281
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
260-499 |
2.47e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.13 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 260 LVDERKNMMEKIKQEERKVDGLN---KNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEE 336
Cdd:COG1340 13 LEEKIEELREEIEELKEKRDELNeelKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELRE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 337 KSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPED-----NKIKELTLEIERLKKRLQQLEvvegDLMKTEDE 411
Cdd:COG1340 93 ELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEekelvEKIKELEKELEKAKKALEKNE----KLKELRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 412 YDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKaiEKGEVVSQEA-ELRHRFRLEEAKSRDLKAEVQALKEKIHELMNKE 490
Cdd:COG1340 169 LKELRKEAEEIHKKIKELAEEAQELHEEMIELY--KEADELRKEAdELHKEIVEAQEKADELHEEIIELQKELRELRKEL 246
|
....*....
gi 767942675 491 DQLSQLQVD 499
Cdd:COG1340 247 KKLRKKQRA 255
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
5-166 |
2.76e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEvDFEHKASRFSQEHEEMNAKLANQESHNRQLR 84
Cdd:COG3096 506 SQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 85 LKLVGLTQRIEELEETNKNLQKAEEELQELRDKIakGECGNSSlmAEVENLRKRVLEMEgkdEEITKTESQCRELRKKLQ 164
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAAQDALERLREQS--GEALADS--QEVTAAMQQLLERE---REATVERDELAARKQALE 657
|
..
gi 767942675 165 EE 166
Cdd:COG3096 658 SQ 659
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
116-493 |
3.24e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 116 DKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEitKTESQCRELRKKLQEEEHHS--KELRLEVEKLQKRMSELEKLEEA 193
Cdd:pfam12128 182 DKIAKAMHSKEGKFRDVKSMIVAILEDDGVVPP--KSRLNRQQVEHWIRDIQAIAgiMKIRPEFTKLQQEFNTLESAELR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 194 FSKSKSECTQLHLNLEKEKNLTKDLLNELEVvKSRVKELECSESRLE-KAELSLKDDLTKLKSFTVMLVDERKNMMEKIK 272
Cdd:pfam12128 260 LSHLHFGYKSDETLIASRQEERQETSAELNQ-LLRTLDDQWKEKRDElNGELSAADAAVAKDRSELEALEDQHGAFLDAD 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 273 QEERKVDglnknfkVEQGKVMDVTEKLIEESKKLLklksemEEKVYNLTRERDELIGKLKSEEEKSselscsVDLLKKRL 352
Cdd:pfam12128 339 IETAAAD-------QEQLPSWQSELENLEERLKAL------TGKHQDVTAKYNRRRSKIKEQNNRD------IAGIKDKL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 353 DGI-EEVEREITRGRS---RKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQ------KFRTE 422
Cdd:pfam12128 400 AKIrEARDRQLAVAEDdlqALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENfderieRAREE 479
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767942675 423 QDKAN--FLSQQLEEIKHQIAKNKAIEKGEVVSQeaelrhrfRLEEAKSRDLKAEVQ--ALKEKIHELMNKEDQL 493
Cdd:pfam12128 480 QEAANaeVERLQSELRQARKRRDQASEALRQASR--------RLEERQSALDELELQlfPQAGTLLHFLRKEAPD 546
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
348-529 |
3.36e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 348 LKKRLDGIEEVEREITRGRSRKGSELtcpEDNKIKELTLEIERLKKRLQQLEVVEGDLmktEDEYDQLEQKFRTEQdkan 427
Cdd:COG4913 267 ARERLAELEYLRAALRLWFAQRRLEL---LEAELEELRAELARLEAELERLEARLDAL---REELDELEAQIRGNG---- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 428 flSQQLEEIKHQIAKNKAiEKGEVVSQEAELRHRFR---LEEAKSRD----LKAEVQALKEKIHELMNK--------EDQ 492
Cdd:COG4913 337 --GDRLEQLEREIERLER-ELEERERRRARLEALLAalgLPLPASAEefaaLRAEAAALLEALEEELEAleealaeaEAA 413
|
170 180 190
....*....|....*....|....*....|....*..
gi 767942675 493 LSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKELE 529
Cdd:COG4913 414 LRDLRRELRELEAEIASLERRKSNIPARLLALRDALA 450
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
604-846 |
3.57e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 44.68 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 604 VLDRYPpAANELTMRKSWIPWMR----------------KRENGPSITQEKGPRTNSSPGHPGEVVLSPKqgQPLHIRVT 667
Cdd:PTZ00449 454 IKDRIP-ANNDIYMLKFDEYWTRiskiqftqeikklikkSKKKLAPIEEEDSDKHDEPPEGPEASGLPPK--APGDKEGE 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 668 PDH----ENSTATLEITSPTSEEFFSSTTVIPTLGNQKP-RITIIPSPNVMPQKQKSGDTTLGPERAMSPVTITTFSREK 742
Cdd:PTZ00449 531 EGEhedsKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPsKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPK 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 743 TPEsgRGAFADRPTSPIQIMTVSTSAAPAEiAVSPESQEMPMGRTILKvTPEKQTVPTP--------------VRKYNSN 808
Cdd:PTZ00449 611 SPK--LPELLDIPKSPKRPESPKSPKRPPP-PQRPSSPERPEGPKIIK-SPKPPKSPKPpfdpkfkekfyddyLDAAAKS 686
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 767942675 809 ANIITTE--DNKIHIHLGSQFKRSPGTSGEGVSPVITVRP 846
Cdd:PTZ00449 687 KETKTTVvlDESFESILKETLPETPGTPFTTPRPLPPKLP 726
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
17-233 |
3.92e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 17 SQKVQDLTQKLREEEEKLKAITSKSKEdrqkllkleVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEE 96
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGL---------VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGS 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 97 LEETNKNLQkAEEELQELRDKIAKgecgnssLMAEVENLRKRVLE----MEGKDEEITKTESQCR-ELRKKLQEEEHHSK 171
Cdd:COG3206 252 GPDALPELL-QSPVIQQLRAQLAE-------LEAELAELSARYTPnhpdVIALRAQIAALRAQLQqEAQRILASLEAELE 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 172 ELRLEVEKLQKRMSELEKLEEAFSKSKSEctqlHLNLEKEKNLTKDLLNELEvvkSRVKELE 233
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEAE----LRRLEREVEVARELYESLL---QRLEEAR 378
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
92-442 |
4.16e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 44.07 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 92 QRIEELEETNK--NLQKAEEELQELRDKIAKGEcgnsslmAEVENLRKRVLEMEGKDE----EITKTESQCRELRKKLQE 165
Cdd:pfam06160 67 ELLFEAEELNDkyRFKKAKKALDEIEELLDDIE-------EDIKQILEELDELLESEEknreEVEELKDKYRELRKTLLA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 166 EEHHSKELrleVEKLQKRMSELEKLEEAFSKSKSECtqlhlNLEKEKNLTKDLLNELEVVKSRVKELEcseSRLEKAELS 245
Cdd:pfam06160 140 NRFSYGPA---IDELEKQLAEIEEEFSQFEELTESG-----DYLEAREVLEKLEEETDALEELMEDIP---PLYEELKTE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 246 LKDDLTKLKS-FTVMLVD----ERKNMMEKIKQEERKVDGLNKNfkVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVY-- 318
Cdd:pfam06160 209 LPDQLEELKEgYREMEEEgyalEHLNVDKEIQQLEEQLEENLAL--LENLELDEAEEALEEIEERIDQLYDLLEKEVDak 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 319 -NLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLdGIEEVEREITRGRSRKGSELtcpeDNKIKELTLEI--------- 388
Cdd:pfam06160 287 kYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSY-TLNENELERVRGLEKQLEEL----EKRYDEIVERLeekevayse 361
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 767942675 389 --ERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAK 442
Cdd:pfam06160 362 lqEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDEFKLELREIKRLVEK 417
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-539 |
4.42e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 287 VEQGKVMDVTE-------KLIEESKKLLKLKSEMEEKVYNLTRERDELigklkseeeksselscsvdllkKRLDGI-EEV 358
Cdd:TIGR02168 141 IEQGKISEIIEakpeerrAIFEEAAGISKYKERRKETERKLERTRENL----------------------DRLEDIlNEL 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 359 EREItrGRSRKGSELTcpedNKIKELTLEIERLKKRLQQLEVVE--GDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEI 436
Cdd:TIGR02168 199 ERQL--KSLERQAEKA----ERYKELKAELRELELALLVLRLEElrEELEELQEELKEAEEELEELTAELQELEEKLEEL 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 437 KHQIAK-------------NKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHELMNK----EDQLSQLQVD 499
Cdd:TIGR02168 273 RLEVSEleeeieelqkelyALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEElaelEEKLEELKEE 352
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 767942675 500 YSVLQQRFMEEENKNKNMGQEVLNLTKELE-LSKRYSRALR 539
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLEtLRSKVAQLEL 393
|
|
| ADIP |
pfam11559 |
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ... |
177-281 |
5.01e-04 |
|
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.
Pssm-ID: 463295 [Multi-domain] Cd Length: 151 Bit Score: 41.53 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 177 VEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKSf 256
Cdd:pfam11559 44 LQQRDRDLEFRESLNETIRTLEAEIERLQSKIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEELQRLKN- 122
|
90 100
....*....|....*....|....*
gi 767942675 257 tvMLVDERKNMMEKIKQEERKVDGL 281
Cdd:pfam11559 123 --ALQQIKTQFAHEVKKRDREIEKL 145
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
130-622 |
5.94e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 130 AEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELR---LEVEKLQKRMSELEKLEEAFSKSKSECTQLHL 206
Cdd:PRK01156 149 AQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKssnLELENIKKQIADDEKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 207 NLEKEKNLTKDLLNEL----EVVKSRVKELECSESRLEKAEL------SLKDDLTKLKSFTVMLVDERKNMMEKIKQEER 276
Cdd:PRK01156 229 NAMDDYNNLKSALNELssleDMKNRYESEIKTAESDLSMELEknnyykELEERHMKIINDPVYKNRNYINDYFKYKNDIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 277 KVDGLNKNFKVEQGKVMDVTEKLIEESK---KLLKLKSEMEEkvynLTRERDELIGKLKSEEEKSSelscSVDLLKKRld 353
Cdd:PRK01156 309 NKKQILSNIDAEINKYHAIIKKLSVLQKdynDYIKKKSRYDD----LNNQILELEGYEMDYNSYLK----SIESLKKK-- 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 354 gIEEVEREITR-----GRSRKGSELTCPEDNKI-KELTLEIERLKKRLQQLEVVEGDLMKTEDEY--------------- 412
Cdd:PRK01156 379 -IEEYSKNIERmsafiSEILKIQEIDPDAIKKElNEINVKLQDISSKVSSLNQRIRALRENLDELsrnmemlngqsvcpv 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 413 -------DQLEQKFRTEQDKANFLSQQL-----------EEIKHQIAKNKAIEKGEVVSQEAELRhrfrleeaKSRDLKA 474
Cdd:PRK01156 458 cgttlgeEKSNHIINHYNEKKSRLEEKIreieievkdidEKIVDLKKRKEYLESEEINKSINEYN--------KIESARA 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 475 EVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKELELSKRY---SRALRPSVNGRRMVDVP 551
Cdd:PRK01156 530 DLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSneiKKQLNDLESRLQEIEIG 609
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767942675 552 VTSTGVQTDAVSGEaAEEETPAVFIRKSFQEENHIMSNLRQVGLKKPVERSSVLDRYPPAANELTMRKSWI 622
Cdd:PRK01156 610 FPDDKSYIDKSIRE-IENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDI 679
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
14-305 |
6.15e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 6.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 14 GLQSQKVQDLTQKLREEEEK---LKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNA--KLANQE-SHNRQLRLKL 87
Cdd:PLN02939 124 QLSDFQLEDLVGMIQNAEKNillLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDAriKLAAQEkIHVEILEEQL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 88 VGLTQRIEELEETNKNLQKA-EEELQELRDKiakgecgNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEE 166
Cdd:PLN02939 204 EKLRNELLIRGATEGLCVHSlSKELDVLKEE-------NMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLREL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 167 EHHSKELRLEVEKLQKR-----MSELEKLEEAFSKSKSECTQLHLNLEKEKnltkDLLNELEVVKSRVKELECSESRLEK 241
Cdd:PLN02939 277 ESKFIVAQEDVSKLSPLqydcwWEKVENLQDLLDRATNQVEKAALVLDQNQ----DLRDKVDKLEASLKEANVSKFSSYK 352
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767942675 242 AELSLKddltKLKsftvmLVDERknmMEKIKQEERKVDGLNKNFKVEqgkVMDVTEKLIEESKK 305
Cdd:PLN02939 353 VELLQQ----KLK-----LLEER---LQASDHEIHSYIQLYQESIKE---FQDTLSKLKEESKK 401
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
27-448 |
6.80e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 27 LREEEEKLKAITSKSKEDRQKLLKLEVDFehkaSRFSQEHEEMNaKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQK 106
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKLSVLQKDY----NDYIKKKSRYD-DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSK 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 107 AEEELQELRDKIAKGECGNSS-LMAEVENLRKRVLEMEGKdeeITKTESQCRELRKKLQEEEHHSKELR----------- 174
Cdd:PRK01156 385 NIERMSAFISEILKIQEIDPDaIKKELNEINVKLQDISSK---VSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgtt 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 175 LEVEKLQKRM----SELEKLEEAFSKSKSECTQLHlnlEKEKNLtKDLLNELEvvKSRVKELECSESRLEKAELSLKDDL 250
Cdd:PRK01156 462 LGEEKSNHIInhynEKKSRLEEKIREIEIEVKDID---EKIVDL-KKRKEYLE--SEEINKSINEYNKIESARADLEDIK 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 251 TKL-----KSFTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERD 325
Cdd:PRK01156 536 IKInelkdKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKS 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 326 ELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKgSELTCPEDNKiKELTLEIERLKKRLQQlevVEGDL 405
Cdd:PRK01156 616 YIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI-AEIDSIIPDL-KEITSRINDIEDNLKK---SRKAL 690
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 767942675 406 MKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEK 448
Cdd:PRK01156 691 DDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKK 733
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
380-537 |
8.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 380 KIKELTLEIERLKKRLQQLE----VVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAK--------NKAIE 447
Cdd:COG4942 42 ELAALKKEEKALLKQLAALErriaALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEllralyrlGRQPP 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 448 KGEVVSQE--AELRHRFRLEEAKSRDLKAEVQALKEKIHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLT 525
Cdd:COG4942 122 LALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLL 201
|
170
....*....|..
gi 767942675 526 KELELSKRYSRA 537
Cdd:COG4942 202 ARLEKELAELAA 213
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
105-279 |
8.90e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 105 QKAEEELQELRDKIAKgecgnssLMAEVENLRKRVLEMEgkdEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRM 184
Cdd:COG1579 6 LRALLDLQELDSELDR-------LEHRLKELPAELAELE---DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 185 SELEKLEEAFSKSK------SECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELecsESRLEKAELSLKDDLTKLKSFTV 258
Cdd:COG1579 76 KKYEEQLGNVRNNKeyealqKEIESLKRRISDLEDEILELMERIEELEEELAEL---EAELAELEAELEEKKAELDEELA 152
|
170 180
....*....|....*....|.
gi 767942675 259 MLVDERKNMMEKIKQEERKVD 279
Cdd:COG1579 153 ELEAELEELEAEREELAAKIP 173
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
18-189 |
9.22e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 9.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 18 QKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFsqehEEMNAKLANQEShNRQLRlklvGLTQRIEEL 97
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI----KKYEEQLGNVRN-NKEYE----ALQKEIESL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 98 EetnKNLQKAEEELQElrdkiakgecgnssLMAEVENLRKRVLEMEgkdEEITKTESQCRELRKKLQEEEhhsKELRLEV 177
Cdd:COG1579 102 K---RRISDLEDEILE--------------LMERIEELEEELAELE---AELAELEAELEEKKAELDEEL---AELEAEL 158
|
170
....*....|..
gi 767942675 178 EKLQKRMSELEK 189
Cdd:COG1579 159 EELEAEREELAA 170
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
85-327 |
1.11e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 42.84 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 85 LKLVGLTQRIEELEETNKNLQkaeeeLQELRDKIAKGECGNSSLMAEVENLRKRVLEME--GKDEEITKTEsqcRELRKK 162
Cdd:pfam18971 551 LAITSFVRRNLENKLTAKGLS-----LQEANKLIKDFLSSNKELAGKALNFNKAVAEAKstGNYDEVKKAQ---KDLEKS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 163 LQEEEHHSKELRlevEKLQKRMSELEKLeEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELecsESRLEKA 242
Cdd:pfam18971 623 LRKREHLEKEVE---KKLESKSGNKNKM-EAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKREL---SDKLEKI 695
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 243 ELSLKDdltKLKSFtvmlvDERKNmmekikqeerkvdGLNKNF-KVEQgkvmdvTEKLIEESKKLLKLKSEMEEKVYNLT 321
Cdd:pfam18971 696 SKDLKD---FSKSF-----DEFKN-------------GKNKDFsKAEE------TLKALKGSVKDLGINPEWISKVENLN 748
|
....*.
gi 767942675 322 RERDEL 327
Cdd:pfam18971 749 AALNEF 754
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
25-228 |
1.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 25 QKLREEEEKLKAItsksKEDRQKLLKLEVDFEHK---ASRFSQEHEEMNAKLANQEShnRQLRLKLVGLTQRIEELEETn 101
Cdd:COG4913 245 EDAREQIELLEPI----RELAERYAAARERLAELeylRAALRLWFAQRRLELLEAEL--EELRAELARLEAELERLEAR- 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 102 knLQKAEEELQELRDKIAkgecGNSSlmAEVENLRKrvlEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQ 181
Cdd:COG4913 318 --LDALREELDELEAQIR----GNGG--DRLEQLER---EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 767942675 182 KRMSE-LEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSR 228
Cdd:COG4913 387 AEAAAlLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
126-529 |
1.31e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 126 SSLMAEVENLRKRVLEMEGkdeEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKrmseleKLEEAFSKSKsectqlh 205
Cdd:pfam05483 81 SKLYKEAEKIKKWKVSIEA---ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSL------KLEEEIQENK------- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 206 lNLEKEKNLTKDLLNELEVV------KSRVKELECSESRLEKAEL--SLKDDLTKLKSFTVMLVDERKNMMEKIKQEERK 277
Cdd:pfam05483 145 -DLIKENNATRHLCNLLKETcarsaeKTKKYEYEREETRQVYMDLnnNIEKMILAFEELRVQAENARLEMHFKLKEDHEK 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 278 VDGLNKNFKVEQGK--------VMDVTEK---------LIEESK-------KLLKLKSE----MEEKVYNLTRERDELIG 329
Cdd:pfam05483 224 IQHLEEEYKKEINDkekqvsllLIQITEKenkmkdltfLLEESRdkanqleEKTKLQDEnlkeLIEKKDHLTKELEDIKM 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 330 KLKSEEEKSSELSCSVDLLKKRLDGIEEvEREITRGRSRKG--------SELTCPEDNKIKELTLEIERLKKRLQQLEVV 401
Cdd:pfam05483 304 SLQRSMSTQKALEEDLQIATKTICQLTE-EKEAQMEELNKAkaahsfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKII 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 402 EGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEK--GEVVSQEAELRHRFRLEEAKSRDLKAEVQAL 479
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKiaEELKGKEQELIFLLQAREKEIHDLEIQLTAI 462
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 767942675 480 KEK----IHELMNKEDQLSQLQVDYSVLQQRFMEEENKNKNMGQEVLNLTKELE 529
Cdd:pfam05483 463 KTSeehyLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELK 516
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
383-492 |
1.44e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 383 ELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQ--EAELRH 460
Cdd:PRK12705 78 ELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKllDAELEE 157
|
90 100 110
....*....|....*....|....*....|..
gi 767942675 461 rfrleeaksrDLKAEVQALKEKIHELMNKEDQ 492
Cdd:PRK12705 158 ----------EKAQRVKKIEEEADLEAERKAQ 179
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
46-325 |
1.57e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 46 QKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGN 125
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAH 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 126 SSLMAEVEN----LRKRVLEMEGKDEEITKTESQCRELRKklqEEEHHSKELRLeveKLQKRMSELEKLEEAFSKSKSEC 201
Cdd:pfam07888 128 EARIRELEEdiktLTQRVLERETELERMKERAKKAGAQRK---EEEAERKQLQA---KLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 202 TQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRL----EKAELS------LKDDLTKLKS---------------- 255
Cdd:pfam07888 202 AQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELrslqERLNASerkvegLGEELSSMAAqrdrtqaelhqarlqa 281
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 256 --FTVMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERD 325
Cdd:pfam07888 282 aqLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKD 353
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
5-248 |
1.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITS--KSKEDRQKLLKLEVDF--EH------------KASRFSQEHEE 68
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRLVEMARelEELSARESDLEQDYQAasDHlnlvqtalrqqeKIERYQEDLEE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 69 MNAKLANQESHnrqlrlklvgLTQRIEELEETNKNLQKAEEELQELRDKIA--------------------------KGE 122
Cdd:COG3096 359 LTERLEEQEEV----------VEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiqyqqavqalekaRAL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 123 CGNSSLmaEVENLRKRVLEMEGKDEEITkteSQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKlEEAFSKSKsect 202
Cdd:COG3096 429 CGLPDL--TPENAEDYLAAFRAKEQQAT---EEVLELEQKLSVADAARRQFEKAYELVCKIAGEVER-SQAWQTAR---- 498
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 767942675 203 QLhlnLEKEKNLtKDLLNELEVVKSRVKELECSESRLEKAELSLKD 248
Cdd:COG3096 499 EL---LRRYRSQ-QALAQRLQQLRAQLAELEQRLRQQQNAERLLEE 540
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
126-327 |
1.64e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 126 SSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEK----LEEAFSKSKSEC 201
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQelaaLEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 202 TQLHLNLEKEKNLTKDLLNELEVVkSRVKELecsesrleKAELSLKDDLTKLKSFTVM--LVDERKNMMEKIKQEERKVD 279
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRL-GRQPPL--------ALLLSPEDFLDAVRRLQYLkyLAPARREQAEELRADLAELA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 767942675 280 GLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDEL 327
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
19-517 |
2.08e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.35 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 19 KVQDLTQKLREEEEKLKAITSKSKE--------DRQKLLKLEVdfEHKASRFSQEHEEMNAKLANQESHNRQLrlklvgl 90
Cdd:TIGR01612 697 KLDDLKSKIDKEYDKIQNMETATVElhlsnienKKNELLDIIV--EIKKHIHGEINKDLNKILEDFKNKEKEL------- 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 91 TQRIEELEETNKNLQKAEEELQELR----DKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEE 166
Cdd:TIGR01612 768 SNKINDYAKEKDELNKYKSKISEIKnhynDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNK 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 167 EhhSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNL-EKEKNLTKDLLNE---------------------LEV 224
Cdd:TIGR01612 848 V--DKFINFENNCKEKIDSEHEQFAELTNKIKAEISDDKLNDyEKKFNDSKSLINEinksieeeyqnintlkkvdeyIKI 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 225 VKSRVKELECSESRLEKAELSLKDDLTKLKS-----------FTVMLVDeRKNMMEKIKQE------------------- 274
Cdd:TIGR01612 926 CENTKESIEKFHNKQNILKEILNKNIDTIKEsnlieksykdkFDNTLID-KINELDKAFKDaslndyeaknnelikyfnd 1004
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 275 ------ERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKlkseeeksselscSVDLL 348
Cdd:TIGR01612 1005 lkanlgKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGK-------------NIELL 1071
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 349 KKRLdgIEEVEREITRGrsrkgseltcpedNKIKeltleiERLKKRLQQLEVVEGDLmKTEDEYDQLEQKFRTEQDKANF 428
Cdd:TIGR01612 1072 NKEI--LEEAEINITNF-------------NEIK------EKLKHYNFDDFGKEENI-KYADEINKIKDDIKNLDQKIDH 1129
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 429 LSQQLEEIKHQ----IAKNKA-IEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQAlKEKIHELMNK-EDQLSQLQVDYSV 502
Cdd:TIGR01612 1130 HIKALEEIKKKsenyIDEIKAqINDLEDVADKAISNDDPEEIEKKIENIVTKIDK-KKNIYDEIKKlLNEIAEIEKDKTS 1208
|
570
....*....|....*
gi 767942675 503 LqqrfmeEENKNKNM 517
Cdd:TIGR01612 1209 L------EEVKGINL 1217
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
24-317 |
2.24e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 24 TQKLREEEEKLKAITSKSKEDRQKLLKLEVDfehkasrfsqeheEMNAKLANQESHNRQLRLKLVGLTQRIEELEEtnkN 103
Cdd:PLN03229 431 VRELEGEVEKLKEQILKAKESSSKPSELALN-------------EMIEKLKKEIDLEYTEAVIAMGLQERLENLRE---E 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 104 LQKAEEELQ----ELRDKIAK---------GECGN-SSLMAEVENLR---KRVLEMEGKDeeitKTESQCRELRKKLQE- 165
Cdd:PLN03229 495 FSKANSQDQlmhpVLMEKIEKlkdefnkrlSRAPNyLSLKYKLDMLNefsRAKALSEKKS----KAEKLKAEINKKFKEv 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 166 -EEHHSKElRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKE-KNLTKDLLNELEVVKSRVKELECS---ESRLE 240
Cdd:PLN03229 571 mDRPEIKE-KMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELElAGVLKSMGLEVIGVTKKNKDTAEQtppPNLQE 649
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767942675 241 KAElSLKDDLTKlKSFTVMLVDERKNMMEKIKQEERKVdglnknfkveqGKVMDVTEKlieesKKLLKLKSEMEEKV 317
Cdd:PLN03229 650 KIE-SLNEEINK-KIERVIRSSDLKSKIELLKLEVAKA-----------SKTPDVTEK-----EKIEALEQQIKQKI 708
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
107-312 |
2.27e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 107 AEEELQELRDKIakgecgnSSLMAEVENLRKRVLEMegkDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSE 186
Cdd:COG3883 14 ADPQIQAKQKEL-------SELQAELEAAQAELDAL---QAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 187 L-EKLEE-AFSKSKSECTQLHLNLEKEKNLTKDLLNELEVV-------KSRVKELECSESRLEKAELSLKDDLTKLKSFT 257
Cdd:COG3883 84 RrEELGErARALYRSGGSVSYLDVLLGSESFSDFLDRLSALskiadadADLLEELKADKAELEAKKAELEAKLAELEALK 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767942675 258 VMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSE 312
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
5-190 |
2.53e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 5 ERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKlEVDFEHKASRFSQEHEEMNAKLANQESHNRQLR 84
Cdd:PRK04863 507 EQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-EDELEQLQEELEARLESLSESVSEARERRMALR 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 85 LKLVGLTQRIEELEETNKNLQKAEEELQELRDKIakGECGNSSlmAEVENLRKRVLEMEgkdeeitktesqcRELRKKLQ 164
Cdd:PRK04863 586 QQLEQLQARIQRLAARAPAWLAAQDALARLREQS--GEEFEDS--QDVTEYMQQLLERE-------------RELTVERD 648
|
170 180
....*....|....*....|....*..
gi 767942675 165 EEEHHSKELRLEVEKLQKR-MSELEKL 190
Cdd:PRK04863 649 ELAARKQALDEEIERLSQPgGSEDPRL 675
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
269-504 |
2.57e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 269 EKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLL 348
Cdd:PHA02562 195 QQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 349 KKRLDGIEEvereitrgrsrKGSELTC-----PEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQ 423
Cdd:PHA02562 275 QKVIKMYEK-----------GGVCPTCtqqisEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 424 DKanfLSQQLEEIKHQIAKNKAIEKgevVSQEAELRHRFRLEEaksrdLKAEVQALKEKIHELMNKEDQLSQLQVDYSVL 503
Cdd:PHA02562 344 NK---ISTNKQSLITLVDKAKKVKA---AIEELQAEFVDNAEE-----LAKLQDELDKIVKTKSELVKEKYHRGIVTDLL 412
|
.
gi 767942675 504 Q 504
Cdd:PHA02562 413 K 413
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-99 |
2.79e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNR 81
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
90
....*....|....*...
gi 767942675 82 QLRLKLVGLTQRIEELEE 99
Cdd:COG4942 224 ELEALIARLEAEAAAAAE 241
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
12-138 |
2.89e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 40.78 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 12 QLGLQSQKVQDL---TQKLREEEEKLKAITSKSKEDRQKLLKlevDFEHKASRFSQEHEEMNAKLANQ-ESHNRQ----- 82
Cdd:pfam04849 165 QLDALQEKLRGLeeeNLKLRSEASHLKTETDTYEEKEQQLMS---DCVEQLSEANQQMAELSEELARKmEENLRQqeeit 241
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 83 -LRLKLVGLTQRIEEL----EETNKNLQKAEE-------ELQELRDKIAkgECGNSSLMA--EVENLRKR 138
Cdd:pfam04849 242 sLLAQIVDLQHKCKELgienEELQQHLQASKEaqrqltsELQELQDRYA--ECLGMLHEAqeELKELRKK 309
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
165-434 |
3.02e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 165 EEEHHSKELRLEVEKLQKRMSELEKLEEAFSK-SKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRL--EK 241
Cdd:PRK05771 37 KEELSNERLRKLRSLLTKLSEALDKLRSYLPKlNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELenEI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 242 AEL-SLKDDLTKLKSFTVMLVDERKNmmEKIKqeeRKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKL-----KSEMEE 315
Cdd:PRK05771 117 KELeQEIERLEPWGNFDLDLSLLLGF--KYVS---VFVGTVPEDKLEELKLESDVENVEYISTDKGYVYvvvvvLKELSD 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 316 KVYNLTRErdeligklkseeeksselscsVDLLKKRLDGIEEVEREITRGRSRKGSEltcpeDNKIKELTLEIERLKKRL 395
Cdd:PRK05771 192 EVEEELKK---------------------LGFERLELEEEGTPSELIREIKEELEEI-----EKERESLLEELKELAKKY 245
|
250 260 270
....*....|....*....|....*....|....*....
gi 767942675 396 QQLEVVegdlmktedEYDQLEQkfrtEQDKANFLSQQLE 434
Cdd:PRK05771 246 LEELLA---------LYEYLEI----ELERAEALSKFLK 271
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
286-500 |
3.26e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 286 KVEQGKVMDVTEKLIEESKKLLKLKSEMEEkvynltrerdeliGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREItrg 365
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPK-------------LNPLREEKKKVSVKSLEELIKDVEEELEKIEKEI--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 366 rsrkgSELTcpedNKIKELTLEIERLKKRLQQLEVVEG-DL-MKTEDEYDQLEQKF-RTEQDKANFLSQQLEEIKHQIAK 442
Cdd:PRK05771 103 -----KELE----EEISELENEIKELEQEIERLEPWGNfDLdLSLLLGFKYVSVFVgTVPEDKLEELKLESDVENVEYIS 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 443 NK--------AIEKGEVVSQEAELR-HRFR-------------LEEAKSR--DLKAEVQALKEKIHELMNKEDQLSQLQV 498
Cdd:PRK05771 174 TDkgyvyvvvVVLKELSDEVEEELKkLGFErleleeegtpselIREIKEEleEIEKERESLLEELKELAKKYLEELLALY 253
|
..
gi 767942675 499 DY 500
Cdd:PRK05771 254 EY 255
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1-198 |
3.33e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 1 MLVDERQMHIEQLGLQSQKVQDLTQKLREEEekLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHN 80
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQIRAEQEEARQRE--VRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEK 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 81 RQlrlklvglTQRIEELeetnkNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEG--KDEEITKTESQCRE 158
Cdd:pfam17380 484 RD--------RKRAEEQ-----RRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERrrEAEEERRKQQEMEE 550
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767942675 159 lRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAFSKSK 198
Cdd:pfam17380 551 -RRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARA 589
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
90-233 |
3.97e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELEETNKnlqkaeeELQELRDKIAKGECGNSSLMAEVENLRKRVLEME-----------GKDEEITKTESQCRE 158
Cdd:PRK09039 48 ISGKDSALDRLNS-------QIAELADLLSLERQGNQDLQDSVANLRASLSAAEaersrlqallaELAGAGAAAEGRAGE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 159 LRKKLQEEEHHSKELRLEVEKLQKRMSELEK----LEEAFSKSKSEctqlhlnlEKEKNLT-KDLLNELEV-VKSRVKEL 232
Cdd:PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRqlaaLEAALDASEKR--------DRESQAKiADLGRRLNVaLAQRVQEL 192
|
.
gi 767942675 233 E 233
Cdd:PRK09039 193 N 193
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
18-143 |
4.01e-03 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 39.66 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 18 QKVQDLTQKLREEEEKLKAITSKSKED-RQKLLKLEVDFEHKASRFSQEHEEmnaklanQESHNRQLRLKLVGLTQRIEE 96
Cdd:pfam04012 57 RRLEQQTEQAKKLEEKAQAALTKGNEElAREALAEKKSLEKQAEALETQLAQ-------QRSAVEQLRKQLAALETKIQQ 129
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767942675 97 LeETNKNLQKAEEELQELRDKIAK--GECGNSSLMAEVENLRKRVLEME 143
Cdd:pfam04012 130 L-KAKKNLLKARLKAAKAQEAVQTslGSLSTSSATDSFERIEEKIEERE 177
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
133-264 |
4.27e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 133 ENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLE-------VEKLQKRMSELEKLEEAFSKSKSECTqlh 205
Cdd:COG2433 392 EEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAEleekderIERLERELSEARSEERREIRKDREIS--- 468
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767942675 206 lNLEKEknlTKDLLNELEVVKSRVKELECSESRLEKA-ELSLKDDLT---KLKSFT---VMLVDER 264
Cdd:COG2433 469 -RLDRE---IERLERELEEERERIEELKRKLERLKELwKLEHSGELVpvkVVEKFTkeaIRRLEEE 530
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
99-316 |
4.37e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 99 ETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGK-------DEEITKTESQCRELRKKLQEEEHHSK 171
Cdd:pfam17380 313 ERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKrelerirQEEIAMEISRMRELERLQMERQQKNE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 172 ELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNElevvkSRVKELEcsesRLEKAELSLKDDLT 251
Cdd:pfam17380 393 RVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE-----ERAREME----RVRLEEQERQQQVE 463
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767942675 252 KLKSftvMLVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEK 316
Cdd:pfam17380 464 RLRQ---QEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEER 525
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
90-497 |
4.45e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHH 169
Cdd:PRK01156 192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEK 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 170 SKELRLEVEKLQKRMSElekleeAFSKSKSEctqlhlnLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAEL--SLK 247
Cdd:PRK01156 272 NNYYKELEERHMKIIND------PVYKNRNY-------INDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVlqKDY 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 248 DDLTKLKSftvmLVDERKNMMEKIKQEERKVDGLNKNFKveqgkvmDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDEL 327
Cdd:PRK01156 339 NDYIKKKS----RYDDLNNQILELEGYEMDYNSYLKSIE-------SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 328 IGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCP------EDNKIKELTLEIERLKKRLqqlevv 401
Cdd:PRK01156 408 KKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPvcgttlGEEKSNHIINHYNEKKSRL------ 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 402 EGDLMKTEDEYDQLEqkfrteqdkanflsqqlEEIKHQIAKNKAIEKGEVvsqeaelrhrfrleeaksRDLKAEVQALKE 481
Cdd:PRK01156 482 EEKIREIEIEVKDID-----------------EKIVDLKKRKEYLESEEI------------------NKSINEYNKIES 526
|
410
....*....|....*.
gi 767942675 482 KIHELMNKEDQLSQLQ 497
Cdd:PRK01156 527 ARADLEDIKIKINELK 542
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
131-328 |
4.47e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 131 EVENLRKrvlemEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVEKLQKRmsELEKLEEAFSKSKSEctqlHLNLEK 210
Cdd:PRK05771 32 HIEDLKE-----ELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKV--SVKSLEELIKDVEEE----LEKIEK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 211 EknlTKDLLNELEVVKSRVKELECSESRLEK-----AELSLKDDLTKLKSFTVML----VDERKNMMEKIKQEERKVDGL 281
Cdd:PRK05771 101 E---IKELEEEISELENEIKELEQEIERLEPwgnfdLDLSLLLGFKYVSVFVGTVpedkLEELKLESDVENVEYISTDKG 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 767942675 282 N--------KNFKVEQGKVM---DVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELI 328
Cdd:PRK05771 178 YvyvvvvvlKELSDEVEEELkklGFERLELEEEGTPSELIREIKEELEEIEKERESLL 235
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-116 |
5.20e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 2 LVDERQMHIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQK-------LLKLEVDFEHKASRFSQEH----EEMN 70
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKlaqlelrLEGLEVRIDNLQERLSEEYsltlEEAE 957
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 767942675 71 AKLANQESHNRQLRLKLVGLTQRIEELEETNKNlqkAEEELQELRD 116
Cdd:TIGR02168 958 ALENKIEDDEEEARRRLKRLENKIKELGPVNLA---AIEEYEELKE 1000
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
10-487 |
5.26e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 10 IEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQEshnrqlrlKLVG 89
Cdd:COG5185 134 KDELIKVEKLDEIADIEASYGEVETGIIKDIFGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPS--------GTVN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 90 LTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEI-TKTESQCRELRKKLQEEeh 168
Cdd:COG5185 206 SIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLrLEKLGENAESSKRLNEN-- 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 169 hSKELRLEVEKLQKRMSELEKLEEAFSKSKSECTQLHlNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKD 248
Cdd:COG5185 284 -ANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKE 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 249 DLTKLksFTVMLVDERKNMMEKIKQEerkvdgLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRE-RDEL 327
Cdd:COG5185 362 EIENI--VGEVELSKSSEELDSFKDT------IESTKESLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQiEQAT 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 328 IGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEV-VEGDLM 406
Cdd:COG5185 434 SSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAkLERQLE 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 407 KTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHEL 486
Cdd:COG5185 514 GVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQASNAKTDGQAANLRTAVIDELTQYLSTIESQQAREDPIPDQ 593
|
.
gi 767942675 487 M 487
Cdd:COG5185 594 A 594
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
17-189 |
6.05e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.43 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 17 SQKVQDLTQKLREEEEKLKAITSKSKEdrqkLLKLEVDFEHKASRFSQEHEEMNAklaNQESHNRQLRlklvGLTQRIE- 95
Cdd:pfam13166 278 DDEFTEFQNRLQKLIEKVESAISSLLA----QLPAVSDLASLLSAFELDVEDIES---EAEVLNSQLD----GLRRALEa 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 96 ---------ELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLRK--RVLEMEGKDEEITKTESQCRELRKKLQ 164
Cdd:pfam13166 347 krkdpfksiELDSVDAKIESINDLVASINELIAKHNEITDNFEEEKNKAKKklRLHLVEEFKSEIDEYKDKYAGLEKAIN 426
|
170 180
....*....|....*....|....*
gi 767942675 165 EEEHHSKELRLEVEKLQKRMSELEK 189
Cdd:pfam13166 427 SLEKEIKNLEAEIKKLREEIKELEA 451
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
20-319 |
6.34e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 20 VQDLTQKLREEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEE 99
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 100 TNKNLQKAEEELQELRDKIAKGECGNSSLMAEVENLrkrvlemegkDEEITKTESQCRELRKKLQEEEHHSKELRLEVEK 179
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAEL----------QSEIAEREEELKELEEQLESLQEELAALEQELQA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 180 LQKRMSElEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELecsESRLEKAELSLKDDLTKLKSFTVM 259
Cdd:COG4372 176 LSEAEAE-QALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSL---EAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 260 LVDERKNMMEKIKQEERKVDGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYN 319
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIG 311
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
390-495 |
6.42e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 6.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 390 RLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKGEVVSQEA--ELRHRFRLEEA 467
Cdd:COG3096 544 RIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDAleRLREQSGEALA 623
|
90 100
....*....|....*....|....*...
gi 767942675 468 KSRDLKAEVQALKEKIHELMNKEDQLSQ 495
Cdd:COG3096 624 DSQEVTAAMQQLLEREREATVERDELAA 651
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
92-489 |
6.82e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.20 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 92 QRIEELEETNK--NLQKAEEELQELRDKIAKGEcgnsslmAEVENLRKRVLEMEGKDE----EITKTESQCRELRKKLQE 165
Cdd:PRK04778 86 EQLFEAEELNDkfRFRKAKHEINEIESLLDLIE-------EDIEQILEELQELLESEEknreEVEQLKDLYRELRKSLLA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 166 EEHHSKELrleVEKLQKRMSELEKLEEAFSKSKSE--CTQLHLNLEKEKNLTKDLLNELEVVKSRVKELEcsesrlekae 243
Cdd:PRK04778 159 NRFSFGPA---LDELEKQLENLEEEFSQFVELTESgdYVEAREILDQLEEELAALEQIMEEIPELLKELQ---------- 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 244 LSLKDDLTKLKS-----------FTVMLVDER-KNMMEKIKQ-----EERKVDGL---NKNFKVEQGKVMDVTEKLIEES 303
Cdd:PRK04778 226 TELPDQLQELKAgyrelveegyhLDHLDIEKEiQDLKEQIDEnlallEELDLDEAeekNEEIQERIDQLYDILEREVKAR 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 304 KKLLKLKSEMEEKVYNLTRERDEL---IGKLKSEEEKSSELSCSVDLLKKRLDGIEEVEREITrgrsrkgsELTcpeDNK 380
Cdd:PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELkeeIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT--------ERI---AEQ 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 381 IKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQDKANFLSQQLEEIKHQIAK-------NKAIEKGEVVS 453
Cdd:PRK04778 375 EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKsnlpglpEDYLEMFFEVS 454
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 767942675 454 QE-----AEL-RHRFRLEEAKSRDLKAE--VQALKEKIHELMNK 489
Cdd:PRK04778 455 DEiealaEELeEKPINMEAVNRLLEEATedVETLEEETEELVEN 498
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
11-216 |
6.90e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 39.62 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 11 EQLGLQSQKVQDLTQKLREEEEKLKAITSKSKE---DRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKL 87
Cdd:pfam04849 108 EQLGSAREEILQLRHELSKKDDLLQIYSNDAEEsetESSCSTPLRRNESFSSLHGCVQLDALQEKLRGLEEENLKLRSEA 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 88 VGLTQRIEELEEtnknlqkaeEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQCRELRKKLQ--- 164
Cdd:pfam04849 188 SHLKTETDTYEE---------KEQQLMSDCVEQLSEANQQMAELSEELARKMEENLRQQEEITSLLAQIVDLQHKCKelg 258
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767942675 165 -EEEHHSKELRLEVEKLQKRMSELEKLEEAFskskSEC-TQLHLNLEKEKNLTK 216
Cdd:pfam04849 259 iENEELQQHLQASKEAQRQLTSELQELQDRY----AEClGMLHEAQEELKELRK 308
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
27-305 |
7.34e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 27 LREEEEKLKAITSKSKEDRQKLLKLEVDFE-----HKASRF-----------SQEHEEMNAKLANQESHNRQLRLKLV-- 88
Cdd:PRK04863 791 LRAEREELAERYATLSFDVQKLQRLHQAFSrfigsHLAVAFeadpeaelrqlNRRRVELERALADHESQEQQQRSQLEqa 870
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 89 --------------------GLTQRIEELEETNKNLQKAEEELQELRDKIAKGECGNSSLMAEVEN---LRKRVLEMEgk 145
Cdd:PRK04863 871 keglsalnrllprlnlladeTLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQfeqLKQDYQQAQ-- 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 146 dEEITKTESQCRELRKKLQEEEHHSKELRLE--------VEKLQKRMSELE----KLEEAFSKSKSECT---QLHLNLEK 210
Cdd:PRK04863 949 -QTQRDAKQQAFALTEVVQRRAHFSYEDAAEmlaknsdlNEKLRQRLEQAEqertRAREQLRQAQAQLAqynQVLASLKS 1027
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 211 EKNLTKDLLNELEvvksrvKELE------CSEsrLEKAELSLKDDLTKLKSFTvmlvDERKNMMEK-IKQEERKVDGLNK 283
Cdd:PRK04863 1028 SYDAKRQMLQELK------QELQdlgvpaDSG--AEERARARRDELHARLSAN----RSRRNQLEKqLTFCEAEMDNLTK 1095
|
330 340
....*....|....*....|..
gi 767942675 284 NFKVEQGKVMDVTEkLIEESKK 305
Cdd:PRK04863 1096 KLRKLERDYHEMRE-QVVNAKA 1116
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
176-527 |
7.61e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 7.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 176 EVEKLQKRMSELEKLEEAFSKSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKaelsLKDDLTKLKS 255
Cdd:TIGR00606 201 KVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK----LDNEIKALKS 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 256 FTVMLVDERKNMMEKIKQEERKVD-GLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEkvynLTRERDELIGKLKSE 334
Cdd:TIGR00606 277 RKKQMEKDNSELELKMEKVFQGTDeQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRL----LNQEKTELLVEQGRL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 335 EEKSSELSCSVdllKKRLDGIEEVEREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEY-- 412
Cdd:TIGR00606 353 QLQADRHQEHI---RARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQad 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 413 ---DQLEQKFRTEQDKANFLSQQLEEIKHQIAKNKAIEKG--EVVSQEAELRHRFR-----LEEAKSRDLKAEVQALKEK 482
Cdd:TIGR00606 430 eirDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSsdRILELDQELRKAERelskaEKNSLTETLKKEVKSLQNE 509
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 767942675 483 IHELMNKEDQLSQLqvdysvlqqrfMEEENKNKNMGQEVLNLTKE 527
Cdd:TIGR00606 510 KADLDRKLRKLDQE-----------MEQLNHHTTTRTQMEMLTKD 543
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
153-491 |
7.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 153 ESQCRELRKKLQEEEHHSKELRLEVEKLQKRMSELEKLEE-AFSKSKSECTQLHL-NLEKEKNLTKDLLNELEVVKSRVK 230
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEySWDEIDVASAEREIaELEAELERLDASSDDLAALEEQLE 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 231 ELECSESRLEKAELSLKDDLTKLKSftvmlvdERKNMMEKIKQEERKVDGLNKNFKVEQgkvmdvtEKLIEESKKLLKLK 310
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEK-------ELEQAEEELDELQDRLEAAEDLARLEL-------RALLEERFAAALGD 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 311 SEMEEKVYNLTRERDELIGKlkseeeksselscsvdllkkrldgIEEVEREITRGRSRKGSELTCPednkIKELTLEIER 390
Cdd:COG4913 762 AVERELRENLEERIDALRAR------------------------LNRAEEELERAMRAFNREWPAE----TADLDADLES 813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 391 L---KKRLQQLEvvEGDLMKTEDEYDQLEQKFrTEQDKANFLS---QQLEEIKHQIAK-NKAIEkgevvsqeaELR---- 459
Cdd:COG4913 814 LpeyLALLDRLE--EDGLPEYEERFKELLNEN-SIEFVADLLSklrRAIREIKERIDPlNDSLK---------RIPfgpg 881
|
330 340 350
....*....|....*....|....*....|..
gi 767942675 460 HRFRLEeaKSRDLKAEVQALKEKIHELMNKED 491
Cdd:COG4913 882 RYLRLE--ARPRPDPEVREFRQELRAVTSGAS 911
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
29-493 |
8.63e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.09 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 29 EEEEKLKAITSKSKEDRQKLLKLEVDFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAE 108
Cdd:pfam05483 71 ENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKEN 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 109 EELQELRDkIAKGECGNSSlmaevENLRKRVLEMEGKDEEITKTESQCRELRKKLQEEEHHSKELRLEVE-KLQKRMSEL 187
Cdd:pfam05483 151 NATRHLCN-LLKETCARSA-----EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHfKLKEDHEKI 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 188 EKLEEAFSKS----KSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELEcsesrlEKAEL---SLKDDLTKLKSFTVML 260
Cdd:pfam05483 225 QHLEEEYKKEindkEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE------EKTKLqdeNLKELIEKKDHLTKEL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 261 VDERKNMMEKIKQEErkvdGLNKNFKVEQGKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSE 340
Cdd:pfam05483 299 EDIKMSLQRSMSTQK----ALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEK 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 341 LSCSVDLLKKRLDGIEEVEREITRGRSRKGSEL-----TCPEDNKIKELTLEIERLKKRLQQLEV-VEGDLMKTEDEYDQ 414
Cdd:pfam05483 375 NEDQLKIITMELQKKSSELEEMTKFKNNKEVELeelkkILAEDEKLLDEKKQFEKIAEELKGKEQeLIFLLQAREKEIHD 454
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767942675 415 LEQKFRTEQDKANFLSQQLEEIKHQIAKNKaIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQALKEKIHELMNKEDQL 493
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLKEVEDLKTELEKEK-LKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERM 532
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
105-495 |
9.47e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 9.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 105 QKAEEELQELRDKIAKGECGNSSLMAEVENLRKRVLEMEGKDEEITKTESQC---------------RELRKKLQEEEHH 169
Cdd:PRK01156 345 KSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEIlkiqeidpdaikkelNEINVKLQDISSK 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 170 SKELRLEVEKLQKRMSELEKLEEAFS-KSKSECTQLHLNLEKEKNLTKDLLNELEVVKSRVKELECSESRLEKAelslKD 248
Cdd:PRK01156 425 VSSLNQRIRALRENLDELSRNMEMLNgQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEK----IV 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 249 DLTKLKSFTvmlvdeRKNMMEKIKQEERKVDGLNKNFKveqgKVMDVTEKLIEESKKLLKLKSEMEE-KVYNLTRERDEL 327
Cdd:PRK01156 501 DLKKRKEYL------ESEEINKSINEYNKIESARADLE----DIKIKINELKDKHDKYEEIKNRYKSlKLEDLDSKRTSW 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 328 IgklkseeeksselscsvdllkKRLDGIEEVEREITRGRSrkgseltcpednkiKELTLEIERLKKRLQQLEV------- 400
Cdd:PRK01156 571 L---------------------NALAVISLIDIETNRSRS--------------NEIKKQLNDLESRLQEIEIgfpddks 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 401 -VEGDLMKTEDEYDQLEQKFRTEQDKA---NFLSQQLEEIKHQIAKNKAIE--KGEVVSQEAELRHRFRLEEAKSRDLKA 474
Cdd:PRK01156 616 yIDKSIREIENEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSIIpdLKEITSRINDIEDNLKKSRKALDDAKA 695
|
410 420
....*....|....*....|.
gi 767942675 475 EVQALKEKIHELMNKEDQLSQ 495
Cdd:PRK01156 696 NRARLESTIEILRTRINELSD 716
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
104-322 |
9.58e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 39.36 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 104 LQKAEEELQELRD-KIAKGECGNSSLMAEVENLRKrvlEMEGKDEEITKTESQCRELRKKLQE-EEHHSKElrleveklq 181
Cdd:pfam09787 20 LQSKEKLIASLKEgSGVEGLDSSTALTLELEELRQ---ERDLLREEIQKLRGQIQQLRTELQElEAQQQEE--------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 182 krmselekleeaFSKSKSECTQLHLNLEKEKNLTKDLLNELEvvksrvkelecsesRLEKAELSLKDDLTKLKSFTVMLV 261
Cdd:pfam09787 88 ------------AESSREQLQELEEQLATERSARREAEAELE--------------RLQEELRYLEEELRRSKATLQSRI 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767942675 262 DERKNMMEKIK-QEERKVDGLNKNFKVEQgKVMDVTEKLIEESKKLLKLKSEMEEKVYNLTR 322
Cdd:pfam09787 142 KDREAEIEKLRnQLTSKSQSSSSQSELEN-RLHQLTETLIQKQTMLEALSTEKNSLVLQLER 202
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
24-117 |
9.59e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 9.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 24 TQKLREEEEKLKAITSKSK---EDRQKLLKLEV--DFEHKASRFSQEHEEMNAKLANQESHNRQ-----------LRLKL 87
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKkeaEAIKKEALLEAkeEIHKLRNEFEKELRERRNELQKLEKRLLQkeenldrklelLEKRE 109
|
90 100 110
....*....|....*....|....*....|
gi 767942675 88 VGLTQRIEELEETNKNLQKAEEELQELRDK 117
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEE 139
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
346-532 |
9.89e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.89 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 346 DLLKKRLDGIEEVEREITRGRSRkgseLTCPEDNKIKE--LTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQKFRTEQ 423
Cdd:PRK11281 83 EQLKQQLAQAPAKLRQAQAELEA----LKDDNDEETREtlSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767942675 424 DKA-NFLS---QQLEEIKHQIAKNKAIEKGEVVSQEAELRHRFRLEEAKSRDLKAEVQAlkekihelmNKEDQ-LSQLQV 498
Cdd:PRK11281 159 ERAqAALYansQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEG---------NTQLQdLLQKQR 229
|
170 180 190
....*....|....*....|....*....|....
gi 767942675 499 DYSVLQQRFMEEENKNKnmgQEVLNlTKELELSK 532
Cdd:PRK11281 230 DYLTARIQRLEHQLQLL---QEAIN-SKRLTLSE 259
|
|
| |
