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Conserved domains on  [gi|767931186|ref|XP_011529958|]
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alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4D isoform X4 [Homo sapiens]

Protein Classification

glycosyltransferase family 54 protein( domain architecture ID 10519914)

glycosyltransferase family 54 protein similar to alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase that participates in the transfer of N-acetylglucosamine (GlcNAc) to the core mannose residues of N-linked glycans

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_54 pfam04666
N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of ...
 84-326 1.68e-113

N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyze the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminus of the protein.


:

Pssm-ID: 461384  Cd Length: 278  Bit Score: 330.04  E-value: 1.68e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186   84 LVSFALGISTVNRGNYSYLKQTLTSVVSRMTLSQEKDSVVIVLVADSNEDYLHSVVKMITKKFKRQVRSGSLEVISIPAF 163
Cdd:pfam04666  32 GVSLVLGIPTVKRSKKSYLLDTLLSLFSRMSPSEKKDCVVIVFVAETDPNYVKQVVKNISTNFKEHIQSGLLEVISPPLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  164 LYSSMLNAKHLAEASQKLASWRIKQVLDFCILLLYAQPKAKYYLQLEDDIIAKEMYFTKITDFVGNISSNNWFFIEFSML 243
Cdd:pfam04666 112 YYPNLKNLKKTFNDSPKRVKWRTKQNLDYAFLMNYAQSKGTYYLQLEDDVVAKPGFFTTIKNFARNWESLPWVFLEFSQL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  244 GFIGKLFRSEDLTHFVRFFLMFYKEKPIDWLLNDIFQVKVCDAGEDLRNCMKRKKQIRIQYKPSLFQHVGIHSSFPRKEQ 323
Cdd:pfam04666 192 GFIGKLFRSPDLPRFVEFFLMFYKDKPIDWLLDHFLALKVCNPEKDAKHCKRQKQNRRIRFRPSLFQHVGTYSSLEGKIQ 271


                  ...
gi 767931186  324 YEK 326
Cdd:pfam04666 272 DLK 274
 
Name Accession Description Interval E-value
Glyco_transf_54 pfam04666
N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of ...
 84-326 1.68e-113

N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyze the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminus of the protein.


Pssm-ID: 461384  Cd Length: 278  Bit Score: 330.04  E-value: 1.68e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186   84 LVSFALGISTVNRGNYSYLKQTLTSVVSRMTLSQEKDSVVIVLVADSNEDYLHSVVKMITKKFKRQVRSGSLEVISIPAF 163
Cdd:pfam04666  32 GVSLVLGIPTVKRSKKSYLLDTLLSLFSRMSPSEKKDCVVIVFVAETDPNYVKQVVKNISTNFKEHIQSGLLEVISPPLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  164 LYSSMLNAKHLAEASQKLASWRIKQVLDFCILLLYAQPKAKYYLQLEDDIIAKEMYFTKITDFVGNISSNNWFFIEFSML 243
Cdd:pfam04666 112 YYPNLKNLKKTFNDSPKRVKWRTKQNLDYAFLMNYAQSKGTYYLQLEDDVVAKPGFFTTIKNFARNWESLPWVFLEFSQL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  244 GFIGKLFRSEDLTHFVRFFLMFYKEKPIDWLLNDIFQVKVCDAGEDLRNCMKRKKQIRIQYKPSLFQHVGIHSSFPRKEQ 323
Cdd:pfam04666 192 GFIGKLFRSPDLPRFVEFFLMFYKDKPIDWLLDHFLALKVCNPEKDAKHCKRQKQNRRIRFRPSLFQHVGTYSSLEGKIQ 271


                  ...
gi 767931186  324 YEK 326
Cdd:pfam04666 272 DLK 274
PGAP4-like cd21105
Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI ...
 90-266 2.12e-08

Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI attachment to proteins factor 4 (PGAP4), also known as post-GPI attachment to proteins GalNAc transferase 4 or transmembrane protein 246 (TMEM246). PGAP4 has been shown to be a Golgi-resident GPI-GalNAc transferase. Many eukaryotic proteins are anchored to the cell surface through glycolipid glycosylphosphatidylinositol (GPI). GPIs have a conserved core but exhibit diverse N-acetylgalactosamine (GalNAc) modifications. PGAP4 knockout cells lose GPI-GalNAc structures. PGAP4 is most likely involved in the initial steps of GPI-GalNAc biosynthesis. In contrast to other Golgi glycotransferases, it contains three transmembrane domains. This family also includes uncharacterized fungal proteins with similarity to PGAP4.


Pssm-ID: 409189  Cd Length: 364  Bit Score: 55.08  E-value: 2.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  90 GISTVNRGNYSYLKQTLTSVVSRMTLSQEKDSVVIVLVADSNEDylhsvvkmITKKFKRQVRSGSLEVISIPaflyssml 169
Cdd:cd21105   74 VIIAVNRRPHSYLTQTVASLLRGIQSDLASYSNVSLSICNTESP--------PATFSELERLSELVPVDSIK-------- 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186 170 naKHLAEASQKLASWRIKQVLDFCILLLYA-QPKAKYYLQLEDDIIAKEMYFTKITDFVGNISSN--NWFFIefsmlgfi 246
Cdd:cd21105  138 --RRLEEDKDDSSSWFRKETLDYAYCLRACtESGSRYTLLLEDDAIATPRFLQRLLSLLEDLESPrrKWLFV-------- 207

                        170       180
                 ....*....|....*....|
gi 767931186 247 gKLFRSEDLTHFVRFFLMFY 266
Cdd:cd21105  208 -KLYYPEYWRGFELYFPSIL 226
 
Name Accession Description Interval E-value
Glyco_transf_54 pfam04666
N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of ...
 84-326 1.68e-113

N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; The complex-type of oligosaccharides are synthesized through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyze the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very for N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminus of the protein.


Pssm-ID: 461384  Cd Length: 278  Bit Score: 330.04  E-value: 1.68e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186   84 LVSFALGISTVNRGNYSYLKQTLTSVVSRMTLSQEKDSVVIVLVADSNEDYLHSVVKMITKKFKRQVRSGSLEVISIPAF 163
Cdd:pfam04666  32 GVSLVLGIPTVKRSKKSYLLDTLLSLFSRMSPSEKKDCVVIVFVAETDPNYVKQVVKNISTNFKEHIQSGLLEVISPPLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  164 LYSSMLNAKHLAEASQKLASWRIKQVLDFCILLLYAQPKAKYYLQLEDDIIAKEMYFTKITDFVGNISSNNWFFIEFSML 243
Cdd:pfam04666 112 YYPNLKNLKKTFNDSPKRVKWRTKQNLDYAFLMNYAQSKGTYYLQLEDDVVAKPGFFTTIKNFARNWESLPWVFLEFSQL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  244 GFIGKLFRSEDLTHFVRFFLMFYKEKPIDWLLNDIFQVKVCDAGEDLRNCMKRKKQIRIQYKPSLFQHVGIHSSFPRKEQ 323
Cdd:pfam04666 192 GFIGKLFRSPDLPRFVEFFLMFYKDKPIDWLLDHFLALKVCNPEKDAKHCKRQKQNRRIRFRPSLFQHVGTYSSLEGKIQ 271


                  ...
gi 767931186  324 YEK 326
Cdd:pfam04666 272 DLK 274
PGAP4-like cd21105
Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI ...
 90-266 2.12e-08

Post-GPI attachment to proteins factor 4 and similar proteins; This family includes post-GPI attachment to proteins factor 4 (PGAP4), also known as post-GPI attachment to proteins GalNAc transferase 4 or transmembrane protein 246 (TMEM246). PGAP4 has been shown to be a Golgi-resident GPI-GalNAc transferase. Many eukaryotic proteins are anchored to the cell surface through glycolipid glycosylphosphatidylinositol (GPI). GPIs have a conserved core but exhibit diverse N-acetylgalactosamine (GalNAc) modifications. PGAP4 knockout cells lose GPI-GalNAc structures. PGAP4 is most likely involved in the initial steps of GPI-GalNAc biosynthesis. In contrast to other Golgi glycotransferases, it contains three transmembrane domains. This family also includes uncharacterized fungal proteins with similarity to PGAP4.


Pssm-ID: 409189  Cd Length: 364  Bit Score: 55.08  E-value: 2.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  90 GISTVNRGNYSYLKQTLTSVVSRMTLSQEKDSVVIVLVADSNEDylhsvvkmITKKFKRQVRSGSLEVISIPaflyssml 169
Cdd:cd21105   74 VIIAVNRRPHSYLTQTVASLLRGIQSDLASYSNVSLSICNTESP--------PATFSELERLSELVPVDSIK-------- 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186 170 naKHLAEASQKLASWRIKQVLDFCILLLYA-QPKAKYYLQLEDDIIAKEMYFTKITDFVGNISSN--NWFFIefsmlgfi 246
Cdd:cd21105  138 --RRLEEDKDDSSSWFRKETLDYAYCLRACtESGSRYTLLLEDDAIATPRFLQRLLSLLEDLESPrrKWLFV-------- 207

                        170       180
                 ....*....|....*....|
gi 767931186 247 gKLFRSEDLTHFVRFFLMFY 266
Cdd:cd21105  208 -KLYYPEYWRGFELYFPSIL 226
PGAP4-like_fungal cd22189
uncharacterized fungal proteins similar to Post-GPI attachment to proteins factor 4; This ...
 86-222 3.22e-07

uncharacterized fungal proteins similar to Post-GPI attachment to proteins factor 4; This subfamily contains uncharacterized fungal proteins with similarity to animal post-GPI attachment to proteins factor 4 (PGAP4), also known as post-GPI attachment to proteins GalNAc transferase 4 or transmembrane protein 246 (TMEM246). PGAP4 has been shown to be a Golgi-resident GPI-GalNAc transferase. Many eukaryotic proteins are anchored to the cell surface through glycolipid glycosylphosphatidylinositol (GPI). GPIs have a conserved core but exhibit diverse N-acetylgalactosamine (GalNAc) modifications. PGAP4 knockout cells lose GPI-GalNAc structures. PGAP4 is most likely involved in the initial steps of GPI-GalNAc biosynthesis. In contrast to other Golgi glycotransferases, it contains three transmembrane domains. Proteins from this subfamily contain the putative catalytic site of PGAP4 and may have similar activities.


Pssm-ID: 409190  Cd Length: 375  Bit Score: 51.39  E-value: 3.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767931186  86 SFALGISTVNRGNYSYLKQTLTSVVSRMTLSQEKDSVVIVLVADSN--------EDYLHSVVKmitkkfkrqvrsgslEV 157
Cdd:cd22189   74 SLCVGIPTVKRPGEQYLDTTVGSLLDGLTPEERADIHLVVLIAHTDptqhpaygEPWLHNLAD---------------EV 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767931186 158 isipaFLYS-SMLNAKHLAEASQKLASWRIKQVLDFCILLL--YAQpKAKYYLQLEDDIIAKEMYFTK 222
Cdd:cd22189  139 -----LTYNvSDEDLEHLRELEEEGGNFREKGLFDYTYLLEacYET-GAPYIAMFEDDVVAADGWYHR 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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