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Conserved domains on  [gi|768025042|ref|XP_011528520|]
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mediator of RNA polymerase II transcription subunit 15 isoform X9 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Med15 super family cl26621
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 17-149 7.63e-22

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


The actual alignment was detected with superfamily member pfam09606:

Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 97.77  E-value: 7.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768025042   17 QKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASV-----------------S 79
Cdd:pfam09606   1 QSVVNKIEEALQQNGQTSTKNAREMENHVFAKARTKDEYLGTVARLILHVRDMSKKAAQQQQpqggqgnggmgggqqgmP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768025042   80 DPMNALQSLTGGPAAGAAGIGMPP---RGPGQSLGGMGSLGAMGQPMSlSGQPPPGTSGMaPHSMAVVSTATP 149
Cdd:pfam09606  81 DPINALQNLAGQGTRPQMMGPMGPgpgGPMGQQMGGPGTASNLLASLG-RPQMPMGGAGF-PSQMSRVGRMQP 151
 
Name Accession Description Interval E-value
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 17-149 7.63e-22

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 97.77  E-value: 7.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768025042   17 QKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASV-----------------S 79
Cdd:pfam09606   1 QSVVNKIEEALQQNGQTSTKNAREMENHVFAKARTKDEYLGTVARLILHVRDMSKKAAQQQQpqggqgnggmgggqqgmP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768025042   80 DPMNALQSLTGGPAAGAAGIGMPP---RGPGQSLGGMGSLGAMGQPMSlSGQPPPGTSGMaPHSMAVVSTATP 149
Cdd:pfam09606  81 DPINALQNLAGQGTRPQMMGPMGPgpgGPMGQQMGGPGTASNLLASLG-RPQMPMGGAGF-PSQMSRVGRMQP 151
 
Name Accession Description Interval E-value
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
 17-149 7.63e-22

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 97.77  E-value: 7.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768025042   17 QKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASV-----------------S 79
Cdd:pfam09606   1 QSVVNKIEEALQQNGQTSTKNAREMENHVFAKARTKDEYLGTVARLILHVRDMSKKAAQQQQpqggqgnggmgggqqgmP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768025042   80 DPMNALQSLTGGPAAGAAGIGMPP---RGPGQSLGGMGSLGAMGQPMSlSGQPPPGTSGMaPHSMAVVSTATP 149
Cdd:pfam09606  81 DPINALQNLAGQGTRPQMMGPMGPgpgGPMGQQMGGPGTASNLLASLG-RPQMPMGGAGF-PSQMSRVGRMQP 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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