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Conserved domains on  [gi|768024010|ref|XP_011528320|]
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tetratricopeptide repeat protein 28 isoform X1 [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein 28( domain architecture ID 19960058)

tetratricopeptide repeat protein 28 may be involved in the condensation of spindle midzone microtubules during mitosis, leading to the formation of midbody

CATH:  1.25.40.10
Gene Ontology:  GO:0019900|GO:0051301|GO:0007346
PubMed:  10517866|30708253|11835511|21153002
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1364-1687 2.86e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


:

Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 221.10  E-value: 2.86e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1364 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1443
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1444 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1519
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1520 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1593
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1594 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1672
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 768024010  1673 ----FSHPSNWAGFMLIGS 1687
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
921-1687 2.18e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


:

Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.14  E-value: 2.18e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  921 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1000
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1001 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1080
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1081 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1160
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1161 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1240
Cdd:COG4995   246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1241 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1320
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1321 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1400
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1401 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1480
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1481 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1554
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1555 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1628
Cdd:COG4995   598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1629 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1687
Cdd:COG4995   653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
489-748 5.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 5.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  489 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 568
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  569 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 648
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  649 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 727
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 768024010  728 ASAYAALGTAYRMIQKYDKAL 748
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-911 8.61e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.61e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    21 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 97
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    98 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 177
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   178 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 251
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   252 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 331
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   332 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 405
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   406 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 478
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   479 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 558
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   559 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 637
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   638 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 714
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   715 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 792
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   793 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 872
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 768024010   873 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 911
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2062-2310 1.15e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2062 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2139
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2140 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2219
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2220 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2299
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 768024010  2300 YSSAGSARSSP 2310
Cdd:pfam05109  611 GTSSTPVVTSP 621
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1364-1687 2.86e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 221.10  E-value: 2.86e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1364 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1443
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1444 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1519
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1520 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1593
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1594 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1672
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 768024010  1673 ----FSHPSNWAGFMLIGS 1687
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
921-1687 2.18e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.14  E-value: 2.18e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  921 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1000
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1001 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1080
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1081 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1160
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1161 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1240
Cdd:COG4995   246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1241 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1320
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1321 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1400
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1401 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1480
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1481 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1554
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1555 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1628
Cdd:COG4995   598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1629 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1687
Cdd:COG4995   653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
489-748 5.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 5.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  489 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 568
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  569 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 648
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  649 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 727
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 768024010  728 ASAYAALGTAYRMIQKYDKAL 748
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-911 8.61e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.61e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    21 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 97
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    98 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 177
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   178 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 251
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   252 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 331
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   332 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 405
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   406 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 478
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   479 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 558
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   559 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 637
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   638 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 714
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   715 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 792
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   793 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 872
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 768024010   873 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 911
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
765-974 2.74e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 2.74e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  765 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 844
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  845 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 924
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 768024010  925 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 974
Cdd:COG0457   140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 37-131 6.99e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 6.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   37 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 116
Cdd:PLN03088    7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                          90
                  ....*....|....*
gi 768024010  117 ADALAAFASGLAQDP 131
Cdd:PLN03088   87 QTAKAALEKGASLAP 101
TPR_12 pfam13424
Tetratricopeptide repeat;
808-883 2.73e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.25  E-value: 2.73e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010   808 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 883
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 819-1122 7.54e-11

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 66.18  E-value: 7.54e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   819 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 898
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   899 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 975
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   976 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1040
Cdd:pfam17874  167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1041 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1120
Cdd:pfam17874  246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309


                   ..
gi 768024010  1121 FE 1122
Cdd:pfam17874  310 AE 311
TPR_12 pfam13424
Tetratricopeptide repeat;
489-560 1.21e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 1.21e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010   489 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 560
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2062-2310 1.15e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2062 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2139
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2140 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2219
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2220 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2299
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 768024010  2300 YSSAGSARSSP 2310
Cdd:pfam05109  611 GTSSTPVVTSP 621
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
860-963 3.20e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 3.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  860 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 939
Cdd:COG3063     1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 768024010  940 LHSQLGNYEQAISCLERQLNIARD 963
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 936-1172 9.85e-07

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 54.54  E-value: 9.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  936 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1004
Cdd:NF040586  439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1005 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1078
Cdd:NF040586  514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1079 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1155
Cdd:NF040586  590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                         250
                  ....*....|....*..
gi 768024010 1156 LGHHDEALAVAERGRTR 1172
Cdd:NF040586  660 LGDADEARELAREVLDR 676
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 490-600 1.19e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  490 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 569
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768024010  570 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 600
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
PHA03378 PHA03378
EBNA-3B; Provisional
 2084-2390 1.55e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 50.45  E-value: 1.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2084 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2157
Cdd:PHA03378  520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2158 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2229
Cdd:PHA03378  597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2230 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2298
Cdd:PHA03378  671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2299 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2378
Cdd:PHA03378  746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                         330
                  ....*....|..
gi 768024010 2379 EEGVDKLELKEL 2390
Cdd:PHA03378  817 QQGPTKQILRQL 828
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 852-876 2.44e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 2.44e-05
                            10        20
                    ....*....|....*....|....*
gi 768024010    852 RAYGNLGDCYEALGDYEEAIKYYEQ 876
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 449-657 1.72e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.22  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  449 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 523
Cdd:NF040586  521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  524 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 598
Cdd:NF040586  601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  599 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 657
Cdd:NF040586  671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 609-640 5.93e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 5.93e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 768024010    609 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 640
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 852-1180 1.12e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.52  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  852 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 917
Cdd:NF040586  435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  918 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 988
Cdd:NF040586  505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  989 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 1051
Cdd:NF040586  580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1052 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1122
Cdd:NF040586  656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1123 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1180
Cdd:NF040586  720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 982-1114 1.14e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  982 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1061
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1062 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1114
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 931-964 1.25e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.25e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 768024010    931 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 964
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 47-123 2.30e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.60  E-value: 2.30e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010   47 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 123
Cdd:NF040959  120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1364-1687 2.86e-64

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 221.10  E-value: 2.86e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1364 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLILVLEGELYLIPFALLKGsSSNEYLYERFGLLAVPSIRSLSVQSKSHL 1443
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVD-PDGRYLLERYAISYAPSLRDLSRTRRAAI 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1444 RKNPPtyssstsMAAVIGNPKLPsavmDRWLWGPMPSAEEEAYMVSELLGC---QPLVGSVATKERVMSAL-TQAECVHF 1519
Cdd:pfam12770   77 QARRA-------LQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1520 ATHISWKL-----SALVLTPSMDGNpasskssfghpytipeslrvqddasDGesisdcpplqelLLTAADVLDLQLP-VK 1593
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE-------------------------DG------------LLTARELAELNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1594 LVVLGSSQESNSKV-TADGVIALTRAFLAAGAQCVLVSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKA 1672
Cdd:pfam12770  189 LVVLSACETGLGEIsGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 768024010  1673 ----FSHPSNWAGFMLIGS 1687
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
921-1687 2.18e-41

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 165.14  E-value: 2.18e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  921 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1000
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1001 AEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1080
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1081 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1160
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1161 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVLYYSLAAGYLYSWLLAPGAGIVKFHEHYLG 1240
Cdd:COG4995   246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1241 ENTVENSSDFQASSSVTLPTATGSALEQHIASVREALGVESHYSRACASSETESEAGDIMDQQFEEMNNKLNSVTDPTGF 1320
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1321 LRMVRRNNLFNRSCQSmTSLFSNTVSPTQDGTSSLPRRQSSFAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLILVLE 1400
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1401 GELYLIPFALLKgSSSNEYLYERFGLLAVPSIRSLSVQSKSHLRKNPPtyssstsmAAVIGNPKLPSAvmdrwlWGPMPS 1480
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1481 AEEEAYMVSELL-GCQPLVGSVATKERVMSALTQAECVHFATH-----ISWKLSALVLtpsmdgnpasskssfghpytip 1554
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATHglfdpDNPLRSGLLL---------------------- 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1555 eslrvqddaSDGesisdcpplqelLLTAADVLDLQL-PVKLVVL-----GSSQESNSkvtaDGVIALTRAFLAAGAQCVL 1628
Cdd:COG4995   598 ---------ADG------------LLTAYELAQLDLsPAELVVLsacetGLGDVRGG----EGVLGLARAFLYAGARSVV 652

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1629 VSLWPVPVAASKMFIHAFYSSLLNGLKASAALGEAMKVVQSSKAFSHPSNWAGFMLIGS 1687
Cdd:COG4995   653 ASLWSVDDEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
489-748 5.30e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.10  E-value: 5.30e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  489 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 568
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  569 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 648
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  649 KAYCNLGLAFKALLNFSKAEEC-QKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLE 727
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 768024010  728 ASAYAALGTAYRMIQKYDKAL 748
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
849-1120 5.03e-26

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 109.33  E-value: 5.03e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  849 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELgeAF 928
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  929 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETnnpt 1008
Cdd:COG0457    74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1009 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1088
Cdd:COG0457   144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA---------LGEAALALAAAEVLLALLLALEQALRKKLA 212

                         250       260       270
                  ....*....|....*....|....*....|..
gi 768024010 1089 DEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1120
Cdd:COG0457   213 ILTLAALAELLLLALALLLALRLAALALYQYR 244
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-911 8.61e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 110.17  E-value: 8.61e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    21 SPDGPVLSKAEFVE-KVRQSNQACHDGDFHTAIVLYNEALAVDPQNciLYSNRSAAYMKIQQ--YDKALDDAIKARLLNP 97
Cdd:TIGR02917  113 LPGKTLLDDEGAAElLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAEnrFDEARALIDEVLTADP 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    98 KWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKmKLDKSPFvVVSVVG 177
Cdd:TIGR02917  191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKA 268

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   178 QELLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSALSSAYwSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrah 251
Cdd:TIGR02917  269 LVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEY-QLGNLEQAYQYLNQilkyapNSHQARRL---------- 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   252 gnLGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDELSEAREL 331
Cdd:TIGR02917  335 --LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAAR 400

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   332 GNMGAVYIAMGDFENAVQCHEQHLKIAKDLGnkreeaRAYSNLGSAYHYRRNFDKAMSyhnyvleLAQELMEK------A 405
Cdd:TIGR02917  401 TQLGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasL 467

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   406 IEMRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIA 478
Cdd:TIGR02917  468 HNLLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAI 536

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   479 QELSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIA 558
Cdd:TIGR02917  537 LALAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------IL 590

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   559 RELRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 637
Cdd:TIGR02917  591 NEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALEL 664

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   638 AKDlHDKLSQAKAycNLGLA---FKALLNFSKAEECQKYLLSLAQSLnnsqakfralgnLGDIFICKKDINGAIKFYEQQ 714
Cdd:TIGR02917  665 KPD-NTEAQIGLA--QLLLAakrTESAKKIAKSLQKQHPKAALGFEL------------EGDLYLRQKDYPAAIQAYRKA 729

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   715 LglahqvkdrRLEASAYAA--LGTAYRMIQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYE 792
Cdd:TIGR02917  730 L---------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   793 EQLDLGQKlkdpslEAQVYGNMGITKMNmNVMEEAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIK 872
Cdd:TIGR02917  795 TVVKKAPD------NAVVLNNLAWLYLE-LKDPRALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALP 858

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|
gi 768024010   873 YYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQAL 911
Cdd:TIGR02917  859 LLRKAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
765-974 2.74e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 2.74e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  765 PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMlqqlsgn 844
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPD-DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  845 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHEL 924
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 768024010  925 GEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 974
Cdd:COG0457   140 DPDD--ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
727-974 5.88e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.47  E-value: 5.88e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  727 EASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 806
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPDD 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  807 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 886
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  887 mqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLvvAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 966
Cdd:COG0457   142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 768024010  967 RALESDAA 974
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 490-795 1.75e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 96.72  E-value: 1.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  490 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 567
Cdd:COG2956     8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  568 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 647
Cdd:COG2956    76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  648 AKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlE 727
Cdd:COG2956   144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768024010  728 ASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQL 795
Cdd:COG2956   212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
567-809 1.94e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.84  E-value: 1.94e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  567 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 646
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  647 qAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 726
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  727 eASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSL 806
Cdd:COG0457   144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220


                  ...
gi 768024010  807 EAQ 809
Cdd:COG0457   221 ELL 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
324-571 6.87e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.30  E-value: 6.87e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  324 ELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIakdlgnKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELME 403
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  404 kaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 483
Cdd:COG0457    78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  484 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 563
Cdd:COG0457   146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 768024010  564 IQSEARAL 571
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 728-1079 1.84e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.03  E-value: 1.84e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  728 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYtmafkcyeeqldlgqklkdpsle 807
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEY----------------------- 58

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  808 aqvygnmgitkmnmnvmEEAIGYFEQQLAMLQQlsgnesvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 887
Cdd:COG2956    59 -----------------DRAIRIHQKLLERDPD---------RAEALLELAQDYLKAGLLDRAEELLEKLLELDP----- 107

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  888 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdr 967
Cdd:COG2956   108 -DDAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGP--ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--- 177

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  968 aleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETNNPTCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 1047
Cdd:COG2956   178 ---ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248

                         330       340       350
                  ....*....|....*....|....*....|..
gi 768024010 1048 AAktvsyssLGRTHHALQNYSQAVMYLQEGLR 1079
Cdd:COG2956   249 LA-------LADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 694-993 2.20e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 2.20e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  694 LGDIFICKKDINGAIKFYEQqlglAHQVKDRRLEAsaYAALGTAYRMIQKYDKALGYHTQELEVYQELSdlpgecRAHGH 773
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEE----ALELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  774 LAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLE-AQVYgnmgitkmnmnvmeEAIGYFEQQLAMLQQLSgnESVLDRGR 852
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLlAEIY--------------EQEGDWEKAIEVLERLL--KLGPENAH 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  853 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHElgeafnKAQ 932
Cdd:COG2956   146 AYCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLP 213

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024010  933 AYGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 993
Cdd:COG2956   214 ALPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 614-911 2.47e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 2.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  614 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkYLLSLaqsLNNSQAKFRALGN 693
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  694 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHG 772
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  773 HLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDRgr 852
Cdd:COG2956   149 ELAELYLEQGDYDEAIEALEKALKL-----DPDC-ARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPR-- 217

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010  853 aygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQAL 911
Cdd:COG2956   218 ----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 857-1156 3.24e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.26  E-value: 3.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  857 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGE 936
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQK----LLERDP--DRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  937 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGN 1016
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1017 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1096
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1097 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1156
Cdd:COG2956   218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-549 6.92e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.22  E-value: 6.92e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  290 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQskdelsEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeAR 369
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  370 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 449
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  450 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 529
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225

                         250       260
                  ....*....|....*....|
gi 768024010  530 THGNLAVAYQALGAHDRALQ 549
Cdd:COG0457   226 ALALLLALRLAALALYQYRA 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 390-653 2.05e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 95.45  E-value: 2.05e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  390 YHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI---AEDLKDRAAEGRASSNLGIIHQMKGDYDT 466
Cdd:COG3914    17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaAAAAAALLLLAALLELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  467 ALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHD 545
Cdd:COG3914    97 AL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  546 RALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQ 625
Cdd:COG3914   164 EAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALRQACDWE 231

                         250       260
                  ....*....|....*....|....*...
gi 768024010  626 EAVKYYEQDLALAKDLHDKLSQAKAYCN 653
Cdd:COG3914   232 VYDRFEELLAALARGPSELSPFALLYLP 259
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 534-836 2.24e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.56  E-value: 2.24e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  534 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 613
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  614 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAKFRalgn 693
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  694 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 772
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  773 HLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQVYgnmgitkMNMNVMEEAIGYFEQQLA 836
Cdd:COG2956   217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 333-596 3.41e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 3.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  333 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYA 412
Cdd:COG2956    47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALR 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  413 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 492
Cdd:COG2956   115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  493 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 572
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249

                         250       260
                  ....*....|....*....|....
gi 768024010  573 NLGNFHCSRGEYVQAAPYYEQYLR 596
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
647-897 2.19e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.29  E-value: 2.19e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  647 QAKAYCNLGLAFKALLNFSKAEECqkyllsLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVkdrrl 726
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIED------YEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  727 eASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSL 806
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYERALEL-----DPDD 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  807 eAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNR 886
Cdd:COG0457   144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222

                         250
                  ....*....|.
gi 768024010  887 MQDQAKAYRGL 897
Cdd:COG0457   223 LLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 258-1124 1.20e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 87.06  E-value: 1.20e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   258 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALAshkqcvllakqskdELSEARELG-NMGA 336
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEK--------------ELRKALSLGyPKNQ 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   337 V-------YIAMGDFENAVQcheqhLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKaiemR 409
Cdd:TIGR02917   92 VlpllaraYLLQGKFQQVLD-----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----S 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   410 AYAGLGHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGR 489
Cdd:TIGR02917  159 LYAKLGLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVL 230

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   490 AygNMGNAYNALGMYDQAVKYHRQELQIsmeVNDRASQASTHGnlAVAYQAlGAHDRALQHYQNHLNIARElrdiQSEAR 569
Cdd:TIGR02917  231 L--ALATILIEAGEFEEAEKHADALLKK---APNSPLAHYLKA--LVDFQK-KNYEDARETLQDALKSAPE----YLPAL 298

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   570 ALSNLGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAK 649
Cdd:TIGR02917  299 LLAGASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   650 AYcnLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLgdiFICKKDINGAIKFYEQQLGLAHQVKDRRLeas 729
Cdd:TIGR02917  364 AA--LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS---KLSQGDPSEAIADLETAAQLDPELGRADL--- 435

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   730 ayaALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQ---------- 799
Cdd:TIGR02917  436 ---LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPdffpaaanla 506

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   800 ----KLKDPSLEAQVYGNM-GITKMNMNVMeeaigyfeQQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEE 869
Cdd:TIGR02917  507 ridiQEGNPDDAIQRFEKVlTIDPKNLRAI--------LALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYL 578

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   870 AIKYYEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYE 948
Cdd:TIGR02917  579 GKGQLKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP------DSALALLLLADAYAVMKNYA 652

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   949 QAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtnnptcqgrAYGN--LGLTYESLG 1025
Cdd:TIGR02917  653 KAITSLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQK 717

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1026 TFERAVVYQEQHLSIAAQmNDLAAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasG 1105
Cdd:TIGR02917  718 DYPAAIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------A 777

                          890
                   ....*....|....*....
gi 768024010  1106 NLEEAQHQLYRASALFETI 1124
Cdd:TIGR02917  778 ELYLAQKDYDKAIKHYQTV 796
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 250-516 4.74e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 80.93  E-value: 4.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  250 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQcvLLAKQSKDElsEAR 329
Cdd:COG2956    44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEK--LLELDPDDA--EAL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  330 ELgnMGAVYIAMGDFENAVQCHEQHLKIAKdlgnkrEEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMekaiemR 409
Cdd:COG2956   114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA------R 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  410 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 489
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                         250       260
                  ....*....|....*....|....*..
gi 768024010  490 aygnmgnAYNALGMYDQAVKYHRQELQ 516
Cdd:COG2956   254 -------LLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-140 7.86e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 7.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                          90
                  ....*....|....*
gi 768024010  126 GLAQDPKSLQLLVGM 140
Cdd:COG0457   102 ALELDPDDAEALYNL 116
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 278-961 8.18e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 80.90  E-value: 8.18e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   278 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAvqchE 352
Cdd:TIGR02917  178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------IAVLLALATILIEAGEFEEA----E 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   353 QHLKIAKDLGNKREEARAYSNLgsaYHYRR-NFDKAMSYHNYVLELAQELMEkaieMRAYAGLGHAARcmQDLERAKQYH 431
Cdd:TIGR02917  248 KHADALLKKAPNSPLAHYLKAL---VDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQAYQYL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   432 EQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKY- 510
Cdd:TIGR02917  319 NQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAEYl 386

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   511 ------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQSEARA 570
Cdd:TIGR02917  387 akateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQPDNAS 466

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   571 LSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDLHDKLS 646
Cdd:TIGR02917  467 LHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRAILALA 540

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   647 QAKAYCN--------LGLAFKA-------LLNFSKAEECQKYL---LSLAQS-LNNSQAKFRALGNLGDIFICKKDINGA 707
Cdd:TIGR02917  541 GLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAGDLNKA 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   708 IKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMA 787
Cdd:TIGR02917  621 VSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAKRTESA 688

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   788 FKCYEEQLDlgQKLKDP---SLEAQVYgnmgitkMNMNVMEEAIGYFEQ------------QLAMLQQLSGN-------- 844
Cdd:TIGR02917  689 KKIAKSLQK--QHPKAAlgfELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavktl 759

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   845 ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghrAMGSLQQ----ALVCFEK 916
Cdd:TIGR02917  760 EAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL-----AWLYLELkdprALEYAER 828

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*
gi 768024010   917 rlvvAHELgeAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 961
Cdd:TIGR02917  829 ----ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
214-468 1.25e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.20  E-value: 1.25e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  214 LSSAYWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 293
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  294 LGHVYTAIGDYPNALASHKQcvllAKQSKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSN 373
Cdd:COG0457    82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  374 LGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 453
Cdd:COG0457   150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229

                         250
                  ....*....|....*
gi 768024010  454 LGIIHQMKGDYDTAL 468
Cdd:COG0457   230 LLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
972-1242 1.26e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 1.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  972 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAkt 1051
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDP--DDAEA-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1052 vsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1131
Cdd:COG0457    79 --LNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1132 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPVTIDQILEMVNGQRGLVL 1211
Cdd:COG0457   137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                         250       260       270
                  ....*....|....*....|....*....|.
gi 768024010 1212 YYSLAAGYLYSWLLAPGAGIVKFHEHYLGEN 1242
Cdd:COG0457   213 ILTLAALAELLLLALALLLALRLAALALYQY 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-162 8.03e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 8.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG0457    56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 768024010  126 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQK 162
Cdd:COG0457   136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 711-878 2.04e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  711 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 789
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  790 CYEEQLDLgqklkDPSLeAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 869
Cdd:COG3914   134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198


                  ....*....
gi 768024010  870 AIKYYEQYL 878
Cdd:COG3914   199 AIAAYRRAL 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 496-718 2.17e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  496 NAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDiqsEARALSNLG 575
Cdd:COG3914     9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL---LAALLELAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  576 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLG 655
Cdd:COG3914    86 LLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLG 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010  656 LAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGNLGDIFICKKDINGAIKFYEQQLGLA 718
Cdd:COG3914   154 EALRRLGRLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRRALELD 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 711-1014 5.65e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.64  E-value: 5.65e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  711 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKC 790
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALAL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  791 YEEQLDLgqklkDPsleaqvygnmgitkmnmnvmeeaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEA 870
Cdd:COG3914   101 YRRALAL-----NP--------------------------------------------DNAEALFNLGNLLLALGRLEEA 131

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  871 IKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGELGSLHSQLGNYEQA 950
Cdd:COG3914   132 LAALRRALALN------PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP------DNAEALNNLGNALQDLGRLEEA 199

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  951 ISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPTCQGRAY 1014
Cdd:COG3914   200 IAAYRRALELDPD------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 37-131 6.99e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.51  E-value: 6.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   37 RQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRH 116
Cdd:PLN03088    7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                          90
                  ....*....|....*
gi 768024010  117 ADALAAFASGLAQDP 131
Cdd:PLN03088   87 QTAKAALEKGASLAP 101
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 534-800 1.85e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  534 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 613
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  614 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFSKAEECqkYLLSLAQSLNNSQakfrALGN 693
Cdd:COG3914    84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  694 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 772
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218

                         250       260
                  ....*....|....*....|....*...
gi 768024010  773 HLAAVYMALGKYTmAFKCYEEQLDLGQK 800
Cdd:COG3914   219 NLLFALRQACDWE-VYDRFEELLAALAR 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
46-132 3.22e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 3.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG4785    87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                  ....*..
gi 768024010  126 GLAQDPK 132
Cdd:COG4785   167 ALELDPN 173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 46-140 3.67e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 3.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG3914    92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171

                          90
                  ....*....|....*
gi 768024010  126 GLAQDPKSLQLLVGM 140
Cdd:COG3914   172 ALELDPDNAEALNNL 186
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 728-879 5.12e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 5.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  728 ASAYAALGTAYRMIQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSl 806
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPD- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010  807 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 879
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-356 5.53e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.60  E-value: 5.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   75 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 154
Cdd:COG2956    17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  155 PTYQQLQKMKLDKSPfvVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAYWSLGNTEKSTGYMQQD 234
Cdd:COG2956    97 ELLEKLLELDPDDAE--ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  235 LDVAKTLGdqtgecRAHGNLGSAFFSKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQC 314
Cdd:COG2956   171 LKLDPDCA------RALLLLAELYLEQGDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 768024010  315 VLLAKQSKDELSEARelgnmgaVYIAMGDFENAVQCHEQHLK 356
Cdd:COG2956   239 LELDPSDDLLLALAD-------LLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 34-166 7.61e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 7.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   34 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYL 113
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 768024010  114 GRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD 166
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 44-133 9.60e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 9.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   44 HDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 123
Cdd:COG4783    50 QLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129

                          90
                  ....*....|
gi 768024010  124 ASGLAQDPKS 133
Cdd:COG4783   130 EKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
59-333 1.28e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   59 LAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLV 138
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  139 GMveaamkspmrdsleptyqqlqkmkldkspfvvvsvvGQELLTAGHHGASVVVLEAALKIGTCSLKlrgsVFSALSSAY 218
Cdd:COG0457    81 NL------------------------------------GLALQALGRYEEALEDYDKALELDPDDAE----ALYNLGLAL 120

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  219 WSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVY 298
Cdd:COG0457   121 LELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 768024010  299 TAIGDYPNALASHKQCVLLAKQSKDELSEARELGN 333
Cdd:COG0457   195 VLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 46-170 1.39e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 1.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG3914   126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 768024010  126 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLD---KSPF 170
Cdd:COG3914   206 ALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGpseLSPF 253
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 46-131 2.68e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.83  E-value: 2.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG5010    68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                  ....*.
gi 768024010  126 GLAQDP 131
Cdd:COG5010   148 ALGTSP 153
TPR_12 pfam13424
Tetratricopeptide repeat;
808-883 2.73e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.25  E-value: 2.73e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010   808 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 883
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-130 4.76e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG0457    90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169


                  ....*
gi 768024010  126 GLAQD 130
Cdd:COG0457   170 LEAAA 174
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 819-1122 7.54e-11

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 66.18  E-value: 7.54e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   819 MNMNVMEEAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 898
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   899 NGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 975
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   976 gLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--------CQGRAY---GNLGLTYESLGTFERAV----VYQEQHLSI 1040
Cdd:pfam17874  167 -LARIALAQGELEEALTLLRRAELLARQSFFHVdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLERELRN 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  1041 AAqmndlaaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1120
Cdd:pfam17874  246 LA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLDALSL 309


                   ..
gi 768024010  1121 FE 1122
Cdd:pfam17874  310 AE 311
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
46-135 7.67e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.57  E-value: 7.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALdDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84

                          90
                  ....*....|
gi 768024010  126 GLAQDPKSLQ 135
Cdd:COG3063    85 ALELDPSALR 94
COG3899 COG3899
Predicted ATPase [General function prediction only];
536-1120 7.81e-11

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 67.96  E-value: 7.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  536 VAYQALGAHDRALQHYQ---------------------NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQY 594
Cdd:COG3899   655 AAYASLPPEERRALHRRiaraleargpepleerlfelaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERA 731

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  595 LRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFSKA 667
Cdd:COG3899   732 LELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEA 809

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  668 EECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALgtAYRMIQKYDKA 747
Cdd:COG3899   810 YEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAA--AAAAAAAAALA 887

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  748 LGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKLKDPSLEAQvygnmgitkmnmnVMEEA 827
Cdd:COG3899   888 AAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA-------------AAAAL 954

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  828 IGYFEQQLAMLQQLSGNEsvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSL 907
Cdd:COG3899   955 AAALALAAAAAAAAAAAL--AAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  908 QQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEY 987
Cdd:COG3899  1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  988 DTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLAAKTVSYSSLGRTHHALQNY 1067
Cdd:COG3899  1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAA 1191

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|...
gi 768024010 1068 SQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1120
Cdd:COG3899  1192 AAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 478-640 8.19e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 8.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  478 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 557
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  558 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 637
Cdd:COG4783    64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                  ...
gi 768024010  638 AKD 640
Cdd:COG4783   136 DPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 478-639 1.57e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 1.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  478 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 557
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  558 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 637
Cdd:COG5010    84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151


                  ..
gi 768024010  638 AK 639
Cdd:COG5010   152 SP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-198 3.00e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 3.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG2956   124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010  126 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLQKMKLDKSPFVVVSVVgqeLLTAGHHGASVVVLEAALK 198
Cdd:COG2956   204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 849-971 4.15e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.63  E-value: 4.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  849 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeaf 928
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 768024010  929 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 971
Cdd:COG4235    83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
COG3899 COG3899
Predicted ATPase [General function prediction only];
900-1182 5.52e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 65.26  E-value: 5.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  900 GHRAM--GSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI-------ARDMKDRALE 970
Cdd:COG3899   712 ARRALarGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPAS 791

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  971 SDAACGLGGVYqqMGEYDTALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAk 1050
Cdd:COG3899   792 ARAYANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAAL- 868

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1051 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQL 1130
Cdd:COG3899   869 ALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAA 948

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 768024010 1131 STDYKLSLFDlqtssYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQ 1182
Cdd:COG3899   949 AAAAALAAAL-----ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAA 995
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 857-1003 6.28e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.44  E-value: 6.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  857 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHelgeafNKAQAYGE 936
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010  937 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1003
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
272-598 6.82e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 64.88  E-value: 6.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  272 RHQLVlamklkdREAASSALSS--------------LGHVYTAIGDYPNALASHkqcvLLAKQSKDELSEARELGnmGAV 337
Cdd:COG3899   648 RHDLV-------REAAYASLPPeerralhrriaralEARGPEPLEERLFELAHH----LNRAGERDRAARLLLRA--ARR 714

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  338 YIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIE-----MRAYA 412
Cdd:COG3899   715 ALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRhgnppASARA 794

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  413 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 492
Cdd:COG3899   795 YANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  493 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 572
Cdd:COG3899   875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                         330       340
                  ....*....|....*....|....*.
gi 768024010  573 NLGNFHCSRGEYVQAAPYYEQYLRLA 598
Cdd:COG3899   954 LAAALALAAAAAAAAAAALAAAAAAA 979
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
537-643 9.21e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.49  E-value: 9.21e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  537 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 616
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 768024010  617 AHYCLGNYQEAVKYYEQDLALAKDLHD 643
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 445-600 9.89e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 9.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  445 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 524
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010  525 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 600
Cdd:COG4783    71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 225-474 1.02e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 1.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  225 EKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAmklkdrEAASSALSSLGHVYTAIGDY 304
Cdd:COG3914    55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGRL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  305 PNALASHKQCVLLakqsKDELSEAreLGNMGAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNF 384
Cdd:COG3914   129 EEALAALRRALAL----NPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRL 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  385 DKAMSYHNYVLELAQELmekaiemraYAGLGHAARCMQDLERAKQYHEQQlgiaEDLKDRAAEGRASSNLGIIHQMKGDY 464
Cdd:COG3914   197 EEAIAAYRRALELDPDN---------ADAHSNLLFALRQACDWEVYDRFE----ELLAALARGPSELSPFALLYLPDDDP 263

                         250
                  ....*....|
gi 768024010  465 DTALKLHKTH 474
Cdd:COG3914   264 AELLALARAW 273
TPR_12 pfam13424
Tetratricopeptide repeat;
489-560 1.21e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.63  E-value: 1.21e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010   489 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 560
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 921-1120 1.32e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  921 AHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 1000
Cdd:COG3914    28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1001 aeetnNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmnDLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRL 1080
Cdd:COG3914   108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNP---DFAE---AYLNLGEALRRLGRLEEAIAALRRALEL 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 768024010 1081 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1120
Cdd:COG3914   176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
TPR_12 pfam13424
Tetratricopeptide repeat;
931-1003 1.91e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.91e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024010   931 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 1003
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
361-648 2.43e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 62.95  E-value: 2.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  361 LGNKREEARAYsNLGSAYHYRRN--FDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGI- 437
Cdd:COG3899   697 RAGERDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAr 775

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  438 ------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYH 511
Cdd:COG3899   776 alaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELL 853

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  512 RQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYV 585
Cdd:COG3899   854 REALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALAL 933

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010  586 QAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 648
Cdd:COG3899   934 AAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 523-669 2.94e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.05  E-value: 2.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  523 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 602
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010  603 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEE 669
Cdd:COG5010    87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 10-470 3.52e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 62.31  E-value: 3.52e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    10 PLFGADTIGQrsPDGPvlSKAEFVEKVRQS---------NQACHDGDFHTAIVLYNEALAVDPqNCILYSNRSAAYMKIQ 80
Cdd:TIGR00990  100 PVEPADELPE--IDES--SVANLSEEERKKyaaklkekgNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALG 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010    81 QYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF-ASGLAQDPKSLQlLVGMVEAAMKSPMRDSLEPTYQQ 159
Cdd:TIGR00990  175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLtASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILET 253

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   160 LQKmKLDKSPFV--VVSVVGQELLTAGHHGAsvVVLEAALKIGTCSLKLRgSVFSALSSAYwslgntEKSTGYMQQDLDV 237
Cdd:TIGR00990  254 KPE-NLPSVTFVgnYLQSFRPKPRPAGLEDS--NELDEETGNGQLQLGLK-SPESKADESY------EEAARAFEKALDL 323

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   238 AKtLGDQtgECRAHGNLGSAFFSKGNYREALTNhrhqLVLAMKLKDREAAS-----SALSSLGHVYTAIGDYPNALAS-- 310
Cdd:TIGR00990  324 GK-LGEK--EAIALNLRGTFKCLKGKHLEALAD----LSKSIELDPRVTQSyikraSMNLELGDPDKAEEDFDKALKLns 396

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   311 -------HKQCVLLAKQSKDElsearelgnmgavyiAMGDFENAVQCHEQHL--------------KIAKDLGNKREEAR 369
Cdd:TIGR00990  397 edpdiyyHRAQLHFIKGEFAQ---------------AGKDYQKSIDLDPDFIfshiqlgvtqykegSIASSMATFRRCKK 461

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   370 AYSNLGSAYHY-------RRNFDKAMSYHNYVLELAQELmeKAIEMRAYAGLGHAA---RCMQDLERAKQYHEQQLgIAE 439
Cdd:TIGR00990  462 NFPEAPDVYNYygellldQNKFDEAIEKFDTAIELEKET--KPMYMNVLPLINKALalfQWKQDFIEAENLCEKAL-IID 538

                          490       500       510
                   ....*....|....*....|....*....|.
gi 768024010   440 DLKDRAAEGRASSNLgiihqMKGDYDTALKL 470
Cdd:TIGR00990  539 PECDIAVATMAQLLL-----QQGDVDEALKL 564
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 103-475 4.09e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 4.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  103 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVgmveaamkspmrdsleptyqqlqkmkldkspfvvvsvvgqellt 182
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-------------------------------------------- 46

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  183 aghhgasvvvleaalkigtcslklrgsvfsALSSAYWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFFSKG 262
Cdd:COG2956    47 ------------------------------ALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQDYLKAG 90

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  263 NYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMG 342
Cdd:COG2956    91 LLDRAEE------LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN------AHAYCELAELYLEQG 158

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  343 DFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAmsyhnyvLELAQELMEKAIE-MRAYAGLGHAARCM 421
Cdd:COG2956   159 DYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEA-------IAALERALEQDPDyLPALPRLAELYEKL 225

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 768024010  422 QDLERAKQYHEQQLGIAEDLKDRAAegrassnLGIIHQMKGDYDTALKLHKTHL 475
Cdd:COG2956   226 GDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQL 272
TPR_12 pfam13424
Tetratricopeptide repeat;
526-600 4.79e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.09  E-value: 4.79e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010   526 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 600
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 930-1081 6.94e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 6.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  930 KAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETNNPt 1008
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDEP- 72

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010 1009 cqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLaaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 1081
Cdd:COG4783    73 ---EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
497-603 7.00e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 7.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  497 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 576
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 768024010  577 FHCSRGEYVQAAPYYEQYLRLAPDLQD 603
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2062-2310 1.15e-08

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 60.70  E-value: 1.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2062 GTAGGMRVSVSSKGSISTPNSPVKMTLIP--SPNSPFQKVGKLASSDTGESDQSSTETDSTVKSQEESNPKLDPQELAQK 2139
Cdd:pfam05109  397 GTAPKTLIITRTATNATTTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSP 476

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2140 ILEETQShliaverlqrSGGQVSKSNNPEDgvQAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLpkv 2219
Cdd:pfam05109  477 TPAGTTS----------GASPVTPSPSPRD--NGTESKAPDMTSPTSAVTTP--TPNATSPTPAVTTPTPNATSPTL--- 539

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2220 ssGYSSPTTSEMSikdsPSQHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALS 2299
Cdd:pfam05109  540 --GKTSPTSAVTT----PTPNATSPTPAVTTPTPNATIPTLG---KTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG 610

                          250
                   ....*....|.
gi 768024010  2300 YSSAGSARSSP 2310
Cdd:pfam05109  611 GTSSTPVVTSP 621
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 759-881 1.55e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 1.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  759 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQqlaML 838
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 768024010  839 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 881
Cdd:COG4235    79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 774-918 1.64e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 1.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  774 LAAVYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRA 853
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024010  854 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRL 918
Cdd:COG4783    75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 808-964 1.77e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 1.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  808 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 887
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010  888 qDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEAFnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 964
Cdd:COG4783    70 -DEPEARLNLGLALLKAGDYDEALALLEK----ALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
331-400 1.98e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.16  E-value: 1.98e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024010   331 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL--GNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 400
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 931-1168 1.98e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 1.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  931 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETNNPTCQ 1010
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1011 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 1090
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNP--DNAEA----LFNLGNLLLALGRLEEALAALRRALALNP------DF 145

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 768024010 1091 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1168
Cdd:COG3914   146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 264-433 2.43e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 2.43e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  264 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvLLAKQSkdelSEARELGNMGAVYIAMGD 343
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRR--ALALNP----DNAEALFNLGNLLLALGR 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  344 FENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQD 423
Cdd:COG3914   128 LEEALAALRRALALNPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------ALNNLGNALQDLGR 195

                         170
                  ....*....|
gi 768024010  424 LERAKQYHEQ 433
Cdd:COG3914   196 LEEAIAAYRR 205
COG3899 COG3899
Predicted ATPase [General function prediction only];
264-598 2.69e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 59.87  E-value: 2.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  264 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYiaMGD 343
Cdd:COG3899   728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  344 FENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEKAIEMRAYAGLGHAARCMQD 423
Cdd:COG3899   806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  424 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 497
Cdd:COG3899   886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  498 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 577
Cdd:COG3899   966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044

                         330       340
                  ....*....|....*....|.
gi 768024010  578 HCSRGEYVQAAPYYEQYLRLA 598
Cdd:COG3899  1045 LLAALAAAAAAAAAAAALAAA 1065
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 717-878 2.72e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 2.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  717 LAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLD 796
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  797 LgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQ 876
Cdd:COG5010    83 L-----DPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQR 147


                  ..
gi 768024010  877 YL 878
Cdd:COG5010   148 AL 149
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
860-963 3.20e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 3.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  860 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRAMGSLQQALVcFEKrlvvAHELgeAFNKAQAYGELGS 939
Cdd:COG3063     1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 768024010  940 LHSQLGNYEQAISCLERQLNIARD 963
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 46-133 3.83e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 3.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG4235    31 GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110


                  ....*...
gi 768024010  126 GLAQDPKS 133
Cdd:COG4235   111 LLALLPAD 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 51-146 4.02e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 4.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   51 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 130
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90
                  ....*....|....*.
gi 768024010  131 PKSLQLLVGMVEAAMK 146
Cdd:COG4235    82 PDNPEALYLLGLAAFQ 97
TPR_12 pfam13424
Tetratricopeptide repeat;
889-963 5.00e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.00  E-value: 5.00e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010   889 DQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAF--NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 963
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 366-520 5.68e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 5.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  366 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElmekaiEMRAYAGLGHAARCMQDLERA-KQYHEQqlgiaedLKDR 444
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAiVLLHEA-------LELD 68

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010  445 AAEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 520
Cdd:COG4783    69 PDEPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
449-517 6.33e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.62  E-value: 6.33e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024010   449 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 517
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-233 7.56e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 7.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  126 GLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkMKLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKIGTCSLK 205
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                         170       180
                  ....*....|....*....|....*...
gi 768024010  206 LRgsvfsALSSAYWSLGNTEKSTGYMQQ 233
Cdd:COG2956   248 LL-----ALADLLERKEGLEAALALLER 270
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 488-600 1.03e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  488 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 567
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 768024010  568 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 600
Cdd:COG4235    85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
TPR_12 pfam13424
Tetratricopeptide repeat;
287-360 1.04e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 1.04e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010   287 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 360
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
503-737 1.77e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 1.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  503 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 575
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  576 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 655
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  656 LAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLAHQVKDRRLEASAYAALG 735
Cdd:COG4785   149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221


                  ..
gi 768024010  736 TA 737
Cdd:COG4785   222 LA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 646-797 2.89e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 2.89e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  646 SQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQvkdrr 725
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024010  726 lEASAYAALGTAYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDL 797
Cdd:COG4783    71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
777-886 3.20e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 3.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  777 VYMALGKYTMAFKCYEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 856
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL-----DPD-NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64

                          90       100       110
                  ....*....|....*....|....*....|
gi 768024010  857 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 886
Cdd:COG3063    65 LAELLLELGDYDEALAYLERALELDPSALR 94
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2159-2316 5.38e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 55.31  E-value: 5.38e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2159 GQVSKSNNPEDgVQAPSSTAvfRASETSAFSRPVLSHQKSQPSPVTvkPKPPARSSSLPKVSSGYSSPTTSEMSikdsPS 2238
Cdd:pfam05109  447 GLPSSTHVPTN-LTAPASTG--PTVSTADVTSPTPAGTTSGASPVT--PSPSPRDNGTESKAPDMTSPTSAVTT----PT 517

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2239 QHSGRPSPGCDSQTSQLDQPLFKlkyPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSP---ADAPD 2315
Cdd:pfam05109  518 PNATSPTPAVTTPTPNATSPTLG---KTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPT 594


                   .
gi 768024010  2316 I 2316
Cdd:pfam05109  595 V 595
TPR_12 pfam13424
Tetratricopeptide repeat;
973-1043 6.82e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.92  E-value: 6.82e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010   973 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 1043
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 936-1172 9.85e-07

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 54.54  E-value: 9.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  936 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 1004
Cdd:NF040586  439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1005 -NNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLAAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1078
Cdd:NF040586  514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1079 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1155
Cdd:NF040586  590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                         250
                  ....*....|....*..
gi 768024010 1156 LGHHDEALAVAERGRTR 1172
Cdd:NF040586  660 LGDADEARELAREVLDR 676
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 614-760 1.01e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 1.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  614 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyllSLAQSLNNSQAKFRALGN 693
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010  694 LGDIFICKKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 760
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
940-1042 1.13e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  940 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETNNPtcqgRAYGNLGL 1019
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67

                          90       100
                  ....*....|....*....|...
gi 768024010 1020 TYESLGTFERAVVYQEQHLSIAA 1042
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDP 90
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 490-600 1.19e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  490 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 569
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768024010  570 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 600
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
TPR_12 pfam13424
Tetratricopeptide repeat;
1053-1122 1.29e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 1.29e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768024010  1053 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1122
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2172-2319 1.32e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 54.15  E-value: 1.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2172 QAPSSTAVFRASETSAFSRPvlSHQKSQPSPVTVKPKPPARSSSLPKVSSG-YSSPTTSEMSIKDSPSQHSgrPSP---G 2247
Cdd:pfam05109  423 KAPESTTTSPTLNTTGFAAP--NTTTGLPSSTHVPTNLTAPASTGPTVSTAdVTSPTPAGTTSGASPVTPS--PSPrdnG 498

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010  2248 CDSQTSQLDQPLFKLKYPS----SPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSSPADAPDIDKL 2319
Cdd:pfam05109  499 TESKAPDMTSPTSAVTTPTpnatSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTL 574
TPR_7 pfam13176
Tetratricopeptide repeat;
611-644 1.54e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.38  E-value: 1.54e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 768024010   611 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 644
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 395-558 1.66e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 1.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  395 LELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 474
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  475 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 554
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 768024010  555 LNIA 558
Cdd:COG5010   149 LGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 275-438 1.71e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 1.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  275 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQH 354
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  355 LKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvLELAQELMEKAIEmrAYAGLGHAARCMQDLERAKQYHEQQ 434
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALSPDNPN--AYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 768024010  435 LGIA 438
Cdd:COG5010   149 LGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
55-133 1.78e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.45  E-value: 1.78e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010   55 YNEALAvDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKS 133
Cdd:COG4785    63 IDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
TPR_12 pfam13424
Tetratricopeptide repeat;
689-760 1.98e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.38  E-value: 1.98e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010   689 RALGNLGDIFICKKDINGAIKFYEQQLGLAHQV--KDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYQE 760
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 555-718 2.09e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  555 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 634
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  635 LALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQ 714
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 768024010  715 LGLA 718
Cdd:COG5010   149 LGTS 152
TPR_7 pfam13176
Tetratricopeptide repeat;
933-968 2.11e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.99  E-value: 2.11e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 768024010   933 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 968
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 285-440 2.20e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  285 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelSEARELgnMGAVYIAMGDFENAVQCHEQHLKIAKDlgnk 364
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010  365 reEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAED 440
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALELDPD 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 57-146 2.53e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 2.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   57 EALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQL 136
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148

                          90
                  ....*....|
gi 768024010  137 LVGMVEAAMK 146
Cdd:COG3914   149 YLNLGEALRR 158
TPR_7 pfam13176
Tetratricopeptide repeat;
853-885 3.03e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.61  E-value: 3.03e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768024010   853 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 885
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
457-563 3.33e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  457 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 536
Cdd:COG3063     1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 768024010  537 AYQALGAHDRALQHYQNHLNIARELRD 563
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
TPR_12 pfam13424
Tetratricopeptide repeat;
612-680 3.60e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 3.60e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024010   612 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQS 680
Cdd:pfam13424    7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 825-934 4.00e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 4.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  825 EEAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAM 904
Cdd:COG1729    10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 768024010  905 GSLQQALVCFEKrLVVAHELGEAFNKAQAY 934
Cdd:COG1729    81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
940-1164 4.39e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.30  E-value: 4.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  940 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQ--IAEETNNPTcQGRAYGNL 1017
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAerIDRALALPD-LAQLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1018 GLTYESLGTFERAVvyqeQHLSIAAQMN-DLAAktvSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHG 1096
Cdd:COG4785    80 GVAYDSLGDYDLAI----ADFDQALELDpDLAE---AYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLN 146

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010 1097 LGLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1164
Cdd:COG4785   147 RGIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
TPR_12 pfam13424
Tetratricopeptide repeat;
408-480 4.92e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 4.92e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024010   408 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 480
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 889-993 5.12e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 5.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  889 DQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdra 968
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEK----ALRLDP--DNADALLDLAEALLAAGDTEEAEELLERALALDPD----- 83

                          90       100
                  ....*....|....*....|....*
gi 768024010  969 lESDAACGLGGVYQQMGEYDTALQY 993
Cdd:COG4235    84 -NPEALYLLGLAAFQQGDYAEAIAA 107
TPR_12 pfam13424
Tetratricopeptide repeat;
1012-1083 6.11e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 6.11e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  1012 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 1083
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
75-164 6.28e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   75 AYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALaAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLE 154
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|
gi 768024010  155 PTYQQLQKMK 164
Cdd:COG3063    80 AYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
337-441 6.46e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 6.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  337 VYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKAMSYhnyvlelaqelmEKAIEM-----RAY 411
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL------------EKALKLdpnnaEAL 62

                          90       100       110
                  ....*....|....*....|....*....|
gi 768024010  412 AGLGHAARCMQDLERAKQYHEQQLGIAEDL 441
Cdd:COG3063    63 LNLAELLLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
580-681 6.59e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 6.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  580 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 659
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70

                          90       100
                  ....*....|....*....|..
gi 768024010  660 ALLNFSKAEECQKYLLSLAQSL 681
Cdd:COG3063    71 ELGDYDEALAYLERALELDPSA 92
TPR_1 pfam00515
Tetratricopeptide repeat;
852-883 7.14e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 7.14e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768024010   852 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 883
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
852-883 1.09e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 43.92  E-value: 1.09e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768024010   852 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 883
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
248-320 1.18e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 1.18e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024010   248 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 320
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 881-1041 1.29e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 1.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  881 AQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKAQAYGELGSLHSQLGNYEQAISCLERQLNI 960
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  961 ARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEetNNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSI 1040
Cdd:COG5010    84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP--DNP----NAYSNLAALLLSLGQDDEAKAALQRALGT 151


                  .
gi 768024010 1041 A 1041
Cdd:COG5010   152 S 152
PHA03378 PHA03378
EBNA-3B; Provisional
 2084-2390 1.55e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 50.45  E-value: 1.55e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2084 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESNPKLDPQELaQKILEETQSHL--IAVERLQRS 2157
Cdd:PHA03378  520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQLasSAPSYAQTP 596

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2158 GGQVSKSNNPEDgvqaPSSTAvfRASETSAFSRPVLSHQKSQPSPVTVKP---KPPARSSS--LPKVSSGYSSPT---TS 2229
Cdd:PHA03378  597 WPVPHPSQTPEP----PTTQS--HIPETSAPRQWPMPLRPIPMRPLRMQPitfNVLVFPTPhqPPQVEITPYKPTwtqIG 670

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2230 EMSIKDSPSQHSG-----------RPSPGCDSQTSQLDQPLFKLKYPSSpysAHISKSPRNMSPssGHQSPAGSAPSPAL 2298
Cdd:PHA03378  671 HIPYQPSPTGANTmlpiqwapgtmQPPPRAPTPMRPPAAPPGRAQRPAA---ATGRARPPAAAP--GRARPPAAAPGRAR 745

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2299 SYSSAGSARSSPADAPDIDKLKMAAIDEKVQavhnlkmfwQSTPQHSTGPMKIFRGAPGTMTSKRDVLSLLNLSPRHNKK 2378
Cdd:PHA03378  746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTP---------QPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

                         330
                  ....*....|..
gi 768024010 2379 EEGVDKLELKEL 2390
Cdd:PHA03378  817 QQGPTKQILRQL 828
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 778-879 1.75e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 1.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  778 YMALGKYTMAFKCYEEQLdlgQKLKDPSLEAQVYGNMGITKMNMNVMEEAIGYFEQqlaMLQQLSGNESVLDrgrAYGNL 857
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFL---KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPD---ALLKL 73

                          90       100
                  ....*....|....*....|..
gi 768024010  858 GDCYEALGDYEEAIKYYEQYLS 879
Cdd:COG1729    74 GLSYLELGDYDKARATLEELIK 95
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 825-918 1.77e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  825 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRAM 904
Cdd:COG5010    71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALA------LSPDNPNAYSNLAALLLSL 135

                          90
                  ....*....|....
gi 768024010  905 GSLQQALVCFEKRL 918
Cdd:COG5010   136 GQDDEAKAALQRAL 149
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
980-1084 1.85e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  980 VYQQMGEYDTALQYHQLDLQIAEEtnnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLAAktvsYSSLGR 1059
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67

                          90       100
                  ....*....|....*....|....*
gi 768024010 1060 THHALQNYSQAVMYLQEGLRLAEQL 1084
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 635-797 1.89e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  635 LALAKDLHDKLSQAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 714
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  715 LGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYEEQ 794
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ...
gi 768024010  795 LDL 797
Cdd:COG5010   149 LGT 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 847-1001 2.12e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 2.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  847 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRAMGSLQQALVCFEKrlvvAHELGE 926
Cdd:COG5010    10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQLDP 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024010  927 afNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 1001
Cdd:COG5010    86 --NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 2072-2301 2.35e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 49.77  E-value: 2.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2072 SSKGSISTPNSPVKMTlIPSPNSPFQKVGKLASSDTGESDQSSTETDstvKSQEESNPKlDPQE------LAQKILEETQ 2145
Cdd:pfam03154   57 SKAESMKKSSKKIKEE-APSPLKSAKRQREKGASDTEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGS 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2146 SHLIAVERLQRSGGQVSKSnnPEDGVQAPSSTAVFRASETSAfsrPVLSHQKSQPSPVTVKPKPPARSSSLPKVSSGYSS 2225
Cdd:pfam03154  132 SDPKDIDQDNRSTSPSIPS--PQDNESDSDSSAQQQILQTQP---PVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSV 206

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010  2226 PTTSEMSIKDSPSQHSGRPSP-GCDSQTSQLDQPlfKLKYPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYS 2301
Cdd:pfam03154  207 PPQGSPATSQPPNQTQSTAAPhTLIQQTPTLHPQ--RLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHS 281
COG3899 COG3899
Predicted ATPase [General function prediction only];
921-1182 2.42e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.86  E-value: 2.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  921 AHELGEAfnkAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhqldlqi 1000
Cdd:COG3899   698 AGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL------- 767

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1001 aeetnnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLAAKTVSYSSLGRTHhaLQNYSQAVMYLQEGLRL 1080
Cdd:COG3899   768 --------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGELALAL 819

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1081 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETI-----RHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1155
Cdd:COG3899   820 AERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETgdaalALLALAAAAAAAAAAAALAAAAAAAARLLAA 899

                         250       260
                  ....*....|....*....|....*..
gi 768024010 1156 LGHHDEALAVAERGRTRAFADLLVERQ 1182
Cdd:COG3899   900 AAAALAAAAAAAALAAAELARLAAAAA 926
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 852-876 2.44e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 2.44e-05
                            10        20
                    ....*....|....*....|....*
gi 768024010    852 RAYGNLGDCYEALGDYEEAIKYYEQ 876
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR_7 pfam13176
Tetratricopeptide repeat;
570-605 2.68e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.91  E-value: 2.68e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 768024010   570 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 605
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_12 pfam13424
Tetratricopeptide repeat;
728-800 3.14e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.30  E-value: 3.14e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 768024010   728 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQK 800
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
849-999 3.46e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.60  E-value: 3.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  849 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRAMGSLQQALvcfekrlvvahelgEAF 928
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAAL--------------EDF 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  929 NKA--------QAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL-------ESDAACGL-------GGVYQQMGE 986
Cdd:COG4785   131 DRAleldpdyaYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALwlylaerKLDPEKALallledwATAYLLQGD 210

                         170
                  ....*....|...
gi 768024010  987 YDTALQYHQLDLQ 999
Cdd:COG4785   211 TEEARELFKLALA 223
TPR_12 pfam13424
Tetratricopeptide repeat;
366-440 3.70e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 3.70e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010   366 EEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELM--EKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 440
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
701-801 3.97e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 3.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  701 KKDINGAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 780
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71

                          90       100
                  ....*....|....*....|.
gi 768024010  781 LGKYTMAFKCYEEQLDLGQKL 801
Cdd:COG3063    72 LGDYDEALAYLERALELDPSA 92
TPR_7 pfam13176
Tetratricopeptide repeat;
331-364 4.68e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.53  E-value: 4.68e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 768024010   331 LGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNK 364
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
621-718 6.16e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 6.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  621 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFSKAEECQKyllslAQSLNNSQAkfRALGNLGDIFIC 700
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71

                          90
                  ....*....|....*...
gi 768024010  701 KKDINGAIKFYEQQLGLA 718
Cdd:COG3063    72 LGDYDEALAYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
825-918 6.66e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 6.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  825 EEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRAM 904
Cdd:COG3063     9 EEAEEYYEKALELDP---------DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLEL 72

                          90
                  ....*....|....
gi 768024010  905 GSLQQALVCFEKRL 918
Cdd:COG3063    73 GDYDEALAYLERAL 86
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 347-470 8.04e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 8.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  347 AVQCHEQHLKiakdlgNKREEARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQELMEkaiemrAYAGLGHAARCMQDLER 426
Cdd:COG4235     2 AIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEE 69

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 768024010  427 AKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKL 470
Cdd:COG4235    70 AEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 990-1169 8.11e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 8.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  990 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLAAktvsYSSLGRTHHALQNYSQ 1069
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1070 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1149
Cdd:COG3914    97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152

                         170       180
                  ....*....|....*....|
gi 768024010 1150 QRVLVSLGHHDEALAVAERG 1169
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRA 172
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2039-2314 8.37e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 48.24  E-value: 8.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2039 EPLATYQENRNTCFSPDHKQ-PQPGTAGgmrvSVSSKGSISTPNSPVkmtliPSPNSPFQKVGKLASSDTGESDQSSTET 2117
Cdd:PHA03307   85 RSTPTWSLSTLAPASPAREGsPTPPGPS----SPDPPPPTPPPASPP-----PSPAPDLSEMLRPVGSPGPPPAASPPAA 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2118 DStVKSQEESNPKlDPQELAqkileetqSHLIAVERLQRSGGQVSKSNnpedgvqaPSSTAVFRASETSAFSRPVLSHQK 2197
Cdd:PHA03307  156 GA-SPAAVASDAA-SSRQAA--------LPLSSPEETARAPSSPPAEP--------PPSTPPAAASPRPPRRSSPISASA 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2198 SQPSPVtvkpkpPARSSSLPKVSSGYSSPTTSEMSIKDSPSQHSGRPSPGCDSQTSQLDQPLFKLKYPS--SPYSAHISK 2275
Cdd:PHA03307  218 SSPAPA------PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSrpGPASSSSSP 291

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 768024010 2276 SPRNMSPSSGHqSPAGSAPSPALSYSSAGSARSSPADAP 2314
Cdd:PHA03307  292 RERSPSPSPSS-PGSGPAPSSPRASSSSSSSRESSSSST 329
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-159 8.44e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 8.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   51 AIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQD 130
Cdd:COG5010    39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118

                          90       100
                  ....*....|....*....|....*....
gi 768024010  131 PKSLQLLVGMVEAAMKSPMRDSLEPTYQQ 159
Cdd:COG5010   119 PDNPNAYSNLAALLLSLGQDDEAKAALQR 147
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 333-446 8.85e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 8.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  333 NMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEARAYSNLGSAYHYRRNFDKamsyhnyvlelAQELMEKAIEM---- 408
Cdd:COG4235    22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEE-----------AEELLERALALdpdn 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 768024010  409 -RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 446
Cdd:COG4235    85 pEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 586-718 9.94e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 9.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  586 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFS 665
Cdd:COG4235     1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 768024010  666 KAEEcqkyLLSLAQSLNNSQAkfRALGNLGDIFICKKDINGAIKFYEQQLGLA 718
Cdd:COG4235    69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 290-408 1.02e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  290 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDlgnkreEAR 369
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLERALALDPD------NPE 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 768024010  370 AYSNLGSAYHYRRNFDKAMSYHNYVLELAQE-----LMEKAIEM 408
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAdaparLLEASIAE 130
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 39-117 1.11e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.05  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   39 SNQAchDGDFHTAIVLYNEALAV--DP--QNCILYsNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLG 114
Cdd:PRK02603   44 SAQA--DGEYAEALENYEEALKLeeDPndRSYILY-NMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120


                  ...
gi 768024010  115 RHA 117
Cdd:PRK02603  121 EKA 123
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 45-133 1.41e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   45 DGDFHTAIVLYNEALAVDPQNCIL---YSNRSAAYMKIQQYDKALD---DAIKARLLNPKWPKAYFRQGVALQYLGRHAD 118
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEafeKLLKRYPDSPKAPDALLKLGLSYLELGDYDK 85

                          90
                  ....*....|....*
gi 768024010  119 ALAAFASGLAQDPKS 133
Cdd:COG1729    86 ARATLEELIKKYPDS 100
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
297-403 1.43e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  297 VYTAIGDYPNALASHKQCVLLAKQSkdelseARELGNMGAVYIAMGDFENAVQChEQHLKIAKDlgnkreEARAYSNLGS 376
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 768024010  377 AYHYRRNFDKAMSYHNYVLELAQELME 403
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
46-144 1.49e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVAlQYLGRHADALAAfas 125
Cdd:COG4785   121 GDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA-ERKLDPEKALAL--- 196

                          90
                  ....*....|....*....
gi 768024010  126 gLAQDPKSLQLLVGMVEAA 144
Cdd:COG4785   197 -LLEDWATAYLLQGDTEEA 214
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
421-518 1.56e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  421 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 500
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71

                          90
                  ....*....|....*...
gi 768024010  501 LGMYDQAVKYHRQELQIS 518
Cdd:COG3063    72 LGDYDEALAYLERALELD 89
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 324-640 1.59e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.44  E-value: 1.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  324 ELSEARELGNMGAVYIA--MGDFENAvqchEQHLKIAKDLGNKREEARAYSnLGSAYHYRRNFDKAmsyhnyvLELAQEL 401
Cdd:COG3071    44 EHSEAPLLAYLLAARAAqaLGDYERR----DEYLAQALELAPEAELAVLLT-RAELLLDQGQAEQA-------LATLEAL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  402 MEKA--------IEMRAYAGLGH---AARCMQDLERAKQYHEQQlgiAEDLKDRAAEGRassnlgiIHQMKGDYDtALKL 470
Cdd:COG3071   112 RAGAprhpqvlrLLLQAYRQLGDweeLLELLPALRKHKALSAEE---AQALERRAYLGL-------LRQAARDAE-ALKA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  471 HKTHLCIAQELSDYAAQGRAygnmgNAYNALGMYDQAvkyhRQELQismevndRASQASTHGNLAVAYQALGAHD--RAL 548
Cdd:COG3071   181 LWKALPRAERRDPELAAAYA-----RALIALGDHDEA----ERLLR-------EALKRQWDPRLVRLYGRLQGGDpaKQL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  549 QHYQNHLniARELRDiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkvCHNLGYAHYCLGNYQEAV 628
Cdd:COG3071   245 KRAEKWL--KKHPND----PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEA-------YAELARLLEQLGDPEEAA 311

                         330
                  ....*....|..
gi 768024010  629 KYYEQDLALAKD 640
Cdd:COG3071   312 EHYRKALALALG 323
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 449-657 1.72e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.22  E-value: 1.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  449 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 523
Cdd:NF040586  521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  524 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 598
Cdd:NF040586  601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  599 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 657
Cdd:NF040586  671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
335-472 1.82e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.29  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  335 GAVYIAMGDFENAVQCHEQHLKIAKDLgnkreeARAYSNLGSAYHYRRNFDKAMSYHNYVLEL----AQELMEKAIemrA 410
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALELdpdyAYAYLNRGI---A 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010  411 YAGLGHAARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 472
Cdd:COG4785   151 LYYLGRYELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 609-640 1.83e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 1.83e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768024010   609 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 640
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
177-589 1.87e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.16  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  177 GQELLTAGHHGASVVVLEAALK----IGTCSLKL---RGSVFSALSSAYWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 249
Cdd:COG3899   752 AEALYLAGRFEEAEALLERALAaralAALAALRHgnpPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  250 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGhvyTAIGDYPNALASHKQCVLLAKQSKDELSEAR 329
Cdd:COG3899   832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAA---AAAAAAAALAAAAAAAARLLAAAAAALAAAA 908

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  330 ELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRnFDKAMSYHNYVLELAQELMEKAIEMR 409
Cdd:COG3899   909 AAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALA-AAAAAAAAAALAAAAAAAAAAAAAAA 987

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  410 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 489
Cdd:COG3899   988 AAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAA 1067

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  490 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAY---QALGAHDRALQHYQNHLNIARELRDIQS 566
Cdd:COG3899  1068 LLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALaaaLAALALAAAARAAAALLLLAAALALALA 1147

                         410       420
                  ....*....|....*....|...
gi 768024010  567 EARALSNLGNFHCSRGEYVQAAP 589
Cdd:COG3899  1148 ALLLLAALLLALALLLLALAALA 1170
TPR_7 pfam13176
Tetratricopeptide repeat;
490-525 2.77e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.22  E-value: 2.77e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 768024010   490 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 525
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 852-879 3.76e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.81  E-value: 3.76e-04
                           10        20
                   ....*....|....*....|....*...
gi 768024010   852 RAYGNLGDCYEALGDYEEAIKYYEQYLS 879
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
807-958 4.49e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 4.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  807 EAQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYlsvaqsLNR 886
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDP---------DLAEAYNNRGLAYLLLGDYDAALEDFDRA------LEL 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  887 MQDQAKAYRGLGNGHRAMGSLQQALVCFEK----------RLVVAHELGEAFNKAQAYGEL----GSLHSQLGNYEQAIS 952
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKaleldpndpeRALWLYLAERKLDPEKALALLledwATAYLLQGDTEEARE 216


                  ....*.
gi 768024010  953 CLERQL 958
Cdd:COG4785   217 LFKLAL 222
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 865-956 4.96e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 4.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  865 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRAMGSLQQALVCFEKrlvVAHELGEAFNKAQAYGELGSLHSQL 944
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80

                          90
                  ....*....|..
gi 768024010  945 GNYEQAISCLER 956
Cdd:COG1729    81 GDYDKARATLEE 92
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
453-563 5.19e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 5.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  453 NLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVkyhrQELQISMEVNDRASQAstHG 532
Cdd:COG4785    78 ERGVAYDSLGDYDLAIAD------FDQALELDPDLAEAYNNRGLAYLLLGDYDAAL----EDFDRALELDPDYAYA--YL 145

                          90       100       110
                  ....*....|....*....|....*....|.
gi 768024010  533 NLAVAYQALGAHDRALQHYQNHLNIARELRD 563
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPE 176
TPR_8 pfam13181
Tetratricopeptide repeat;
931-963 5.34e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.30  E-value: 5.34e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768024010   931 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 963
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 609-640 5.93e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 5.93e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 768024010    609 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 640
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 825-961 6.25e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 6.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  825 EEAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAM 904
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010  905 GSLQQALVCFEKrlvvAHELGEafNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 961
Cdd:COG5010   102 GDKDEAKEYYEK----ALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 990-1117 7.01e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 7.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  990 ALQYHQLDLQIAEETNNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLAAktvsYSSLGRTHHALQNYSQ 1069
Cdd:COG5010    33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 768024010 1070 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 1117
Cdd:COG5010   107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 283-562 7.48e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 44.22  E-value: 7.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   283 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDELSEARELGNMGAVYIAMGDFENAVQCHEQHLKIAKDLG 362
Cdd:pfam17874   35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   363 NKREEA--RAYSNLGSAYHYRRNFDKAMSYHNYVLELAQElMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 439
Cdd:pfam17874  115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ-WEPDAAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   440 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 513
Cdd:pfam17874  194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 768024010   514 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 562
Cdd:pfam17874  260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 852-1180 1.12e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.52  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  852 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RAMGSLQQALVCFEKR 917
Cdd:NF040586  435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  918 LVVAHEL-GE--------AFNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 988
Cdd:NF040586  505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  989 TALQY----HQLDLQIAEETNNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMNdLAAkt 1051
Cdd:NF040586  580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAALS-LAN-- 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1052 vsysslgrTHHALQNYSQAVMYLQEGL-RLAEQLGRredeakiRH--------GLGLSLWASGNLEEAQHQLYRASALFe 1122
Cdd:NF040586  656 --------DLRALGDADEARELAREVLdRYRRVLGE-------DHpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1123 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1180
Cdd:NF040586  720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 982-1114 1.14e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  982 QQMGEYDTALQYHQLDLQIAEetnNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLAAKTVSysslgrth 1061
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 768024010 1062 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1114
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
Nup153 pfam08604
Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and ...
 2174-2309 1.20e-03

Nucleoporin Nup153-like; This family contains both the nucleoporin Nup153 from human and Nup154 from fission yeast. These have been demonstrated to be functionally equivalent.


Pssm-ID: 462533 [Multi-domain]  Cd Length: 507  Bit Score: 44.11  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  2174 PSSTavfRAS--ETSAFSRPVL--SHQKSQPSPVTVKPKPPARSSSLPKVSSGYSspTTSEmsIKDSPSQHSG---RPSP 2246
Cdd:pfam08604    1 PSTS---RSAlnFQDVLTRPSLhrSHLNFTVLDSPALFCQPSTSTAFPIGSSGFS--LVKE--IKDSTSQHDDdniSTTS 73

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010  2247 GCDSQTSQLDQPLfklkypSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYSSAGSARSS 2309
Cdd:pfam08604   74 GFSSRASDKDIPV------SKTVSLPLLWSPEAERSHSLSQHSASSSKKPAFNLSAFGTLSPS 130
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 931-964 1.25e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.25e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 768024010    931 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 964
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 441-574 1.27e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  441 LKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQISme 520
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALD-- 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 768024010  521 vndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 574
Cdd:COG4235    82 ----PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 368-400 1.29e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 1.29e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 768024010    368 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQE 400
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
46-137 1.59e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   46 GDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFAS 125
Cdd:COG0457   124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203

                          90
                  ....*....|..
gi 768024010  126 GLAQDPKSLQLL 137
Cdd:COG0457   204 EQALRKKLAILT 215
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 479-600 1.59e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  479 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 550
Cdd:PRK11447  294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 768024010  551 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 600
Cdd:PRK11447  374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 489-513 2.15e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 2.15e-03
                            10        20
                    ....*....|....*....|....*
gi 768024010    489 RAYGNMGNAYNALGMYDQAVKYHRQ 513
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
493-598 2.26e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.18  E-value: 2.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  493 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 567
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 768024010  568 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 598
Cdd:COG4700   160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 47-123 2.30e-03

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 41.60  E-value: 2.30e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768024010   47 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAF 123
Cdd:NF040959  120 DYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHF 196
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 931-993 2.36e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 2.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 768024010  931 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 993
Cdd:COG1729    30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
TPR_1 pfam00515
Tetratricopeptide repeat;
568-600 2.56e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 2.56e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 768024010   568 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 600
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 626-750 2.61e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 2.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  626 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFSKAEECQKYLLSLAQslNNSQAkfraLGNLGDIFICKKDIN 705
Cdd:COG4235     1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 768024010  706 GAIKFYEQQLGLAHQvkdrrlEASAYAALGTAYRMIQKYDKALGY 750
Cdd:COG4235    69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 328-360 3.00e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.00e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 768024010    328 ARELGNMGAVYIAMGDFENAVQCHEQHLKIAKD 360
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 711-836 3.01e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  711 YEQQLGLAHQVKDRRLEASAYAALGTAYRMIQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKC 790
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD------PNNPELYYNLALLYSRSGDKDEAKEY 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 768024010  791 YEEQLDLgqklkDPSlEAQVYGNMGITKMNMNVMEEAIGYFEQQLA 836
Cdd:COG5010   111 YEKALAL-----SPD-NPNAYSNLAALLLSLGQDDEAKAALQRALG 150
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 536-633 3.15e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  536 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 615
Cdd:COG1729     1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74

                          90
                  ....*....|....*...
gi 768024010  616 YAHYCLGNYQEAVKYYEQ 633
Cdd:COG1729    75 LSYLELGDYDKARATLEE 92
TPR_1 pfam00515
Tetratricopeptide repeat;
489-517 3.18e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 3.18e-03
                           10        20
                   ....*....|....*....|....*....
gi 768024010   489 RAYGNMGNAYNALGMYDQAVKYHRQELQI 517
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
673-879 3.26e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 3.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  673 YLLSLAQSLNNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLAHQVKDRR----------------LEASAYAALGT 736
Cdd:COG4785     2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAaaalaaeridralalpDLAQLYYERGV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  737 AYRMIQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYEEQLDLgqklkDPSLeAQVYGNMGI 816
Cdd:COG4785    82 AYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALEL-----DPDY-AYAYLNRGI 149

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  817 TKMNMNVMEEAIGYFEQQLAMLQQ-------LSGNESVLDRGRAYGNL----GDCYEALGDYEEAIKYYEQYLS 879
Cdd:COG4785   150 ALYYLGRYELAIADLEKALELDPNdperalwLYLAERKLDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 84-199 3.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   84 KALDDAIKArllNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDSLEPTYQQLqkM 163
Cdd:COG4235     4 ARLRQALAA---NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA--L 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 768024010  164 KLDKSPFVVVSVVGQELLTAGHHGASVVVLEAALKI 199
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
ycf3 CHL00033
photosystem I assembly protein Ycf3
 524-638 3.64e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.38  E-value: 3.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  524 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 602
Cdd:CHL00033   31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 768024010  603 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 638
Cdd:CHL00033  108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
ycf3 CHL00033
photosystem I assembly protein Ycf3
 459-600 3.92e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.38  E-value: 3.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  459 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 536
Cdd:CHL00033   46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 768024010  537 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 600
Cdd:CHL00033  115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
TPR_1 pfam00515
Tetratricopeptide repeat;
609-640 4.71e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.71e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 768024010   609 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 640
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 725-881 4.84e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.82  E-value: 4.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  725 RLEASAYAALG---TAYRMIQKYDKALGYHTQELE-----VYQEL---------------SDLPGECRAHGHLAAVY--- 778
Cdd:COG3071   123 RLLLQAYRQLGdweELLELLPALRKHKALSAEEAQalerrAYLGLlrqaardaealkalwKALPRAERRDPELAAAYara 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010  779 -MALGKYTMAFKCYEEQLDLGQklkDPSLeAQVYGNMGITKMnmnvmEEAIGYFEQ----------------QLAMLQQL 841
Cdd:COG3071   203 lIALGDHDEAERLLREALKRQW---DPRL-VRLYGRLQGGDP-----AKQLKRAEKwlkkhpndpdlllalgRLCLRNQL 273

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 768024010  842 SGN-----ESVL---DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 881
Cdd:COG3071   274 WGKareylEAALalrPSAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
TPR_7 pfam13176
Tetratricopeptide repeat;
530-563 4.94e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.75  E-value: 4.94e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 768024010   530 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 563
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
TPR_10 pfam13374
Tetratricopeptide repeat;
612-642 5.49e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.71  E-value: 5.49e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 768024010   612 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 642
Cdd:pfam13374    6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
TPR_12 pfam13424
Tetratricopeptide repeat;
66-128 6.19e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 6.19e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768024010    66 CILYSNRSAAYMKIQQYDKALDDAIKA-----RLLNPKWPK---AYFRQGVALQYLGRHADALAAFASGLA 128
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKAleiarRLLGPDHPLtatTLLNLGRLYLELGRYEEALELLERALA 73
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
55-140 7.05e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.67  E-value: 7.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010   55 YNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSL 134
Cdd:COG4785    28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA 107


                  ....*.
gi 768024010  135 QLLVGM 140
Cdd:COG4785   108 EAYNNR 113
TPR_7 pfam13176
Tetratricopeptide repeat;
290-324 7.62e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.98  E-value: 7.62e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 768024010   290 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDE 324
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2072-2309 7.96e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 7.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2072 SSKGSISTPNSPVKMTLIPSPNSPF-QKVGKLASSDTGESDQSSTETDSTVKSQE-ESNPKLDPQELAQKILEETQSHLI 2149
Cdd:PHA03307  181 ETARAPSSPPAEPPPSTPPAAASPRpPRRSSPISASASSPAPAPGRSAADDAGASsSDSSSSESSGCGWGPENECPLPRP 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2150 AVERLQRSGGQVSKSNNPEDGVQAPSSTAVFRAsetsafsrpvlshqksqPSPVTVKPKPPARSSSLPKVSSGYSSPTTS 2229
Cdd:PHA03307  261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRE-----------------RSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 2230 EMSIKDSPSQHSGRpspGCDSQTSQLDQPLFKLKYPSSPYSAhiSKSPRNMSPSSGHQSPAGSAPSPAL---SYSSAGSA 2306
Cdd:PHA03307  324 SSSSSTSSSSESSR---GAAVSPGPSPSRSPSPSRPPPPADP--SSPRKRPRPSRAPSSPAASAGRPTRrraRAAVAGRA 398


                  ...
gi 768024010 2307 RSS 2309
Cdd:PHA03307  399 RRR 401
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1010-1173 9.98e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 9.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1010 QGRAYGNLGLTYESLGTFERAVVYQEQhlSIAAQMNDLAAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrRED 1089
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEK--ALELDPDNPEA----FALLGEILLQLGDLDEAIVLLHEALEL------DPD 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768024010 1090 EAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqlstdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERG 1169
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKA------------------LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132


                  ....
gi 768024010 1170 RTRA 1173
Cdd:COG4783   133 LELD 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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