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Conserved domains on  [gi|768007356|ref|XP_011524925|]
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rRNA 2'-O-methyltransferase fibrillarin isoform X2 [Homo sapiens]

Protein Classification

rRNA 2'-O-methyltransferase fibrillarin family protein( domain architecture ID 10015233)

rRNA 2'-O-methyltransferase fibrillarin family protein is a S-adenosyl-L-methionine (SAM)-dependent methyltransferase that has the ability to methylate both RNAs and proteins, and may be involved in pre-rRNA processing by catalyzing the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00146 PTZ00146
fibrillarin; Provisional
 25-263 6.15e-173

fibrillarin; Provisional


:

Pssm-ID: 240291  Cd Length: 293  Bit Score: 478.46  E-value: 6.15e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  25 SGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI--SEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKP 102
Cdd:PTZ00146  53 GPGKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVedAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKP 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 103 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 182
Cdd:PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 183 PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 262
Cdd:PTZ00146 213 PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292


                 .
gi 768007356 263 K 263
Cdd:PTZ00146 293 K 293
 
Name Accession Description Interval E-value
PTZ00146 PTZ00146
fibrillarin; Provisional
 25-263 6.15e-173

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 478.46  E-value: 6.15e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  25 SGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI--SEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKP 102
Cdd:PTZ00146  53 GPGKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVedAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKP 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 103 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 182
Cdd:PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 183 PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 262
Cdd:PTZ00146 213 PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292


                 .
gi 768007356 263 K 263
Cdd:PTZ00146 293 K 293
Fibrillarin pfam01269
Fibrillarin;
31-258 7.51e-149

Fibrillarin;


Pssm-ID: 396019  Cd Length: 227  Bit Score: 414.69  E-value: 7.51e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356   31 VEPH-RHEGVFICR-GKEDA-LVTKNLVPGESVYGEKRVSISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 107
Cdd:pfam01269   1 VEPHeRFEGVYIVKlGDGDArLATKNLVPGESVYGEKLIKVEGE----EYRVWNPFRSKLAAAILKGLKEIPIKPGSKVL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  108 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 187
Cdd:pfam01269  77 YLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRMLVEMVDVIFADVAQPDQAR 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768007356  188 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP 258
Cdd:pfam01269 157 ILALNARYFLKEGGYFMISIKARSIDVTKEPEEVFKREVRKLKEEGFKPIEQVHLEPYEKDHAMVVGKYKR 227
NOP1 COG1889
Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];
32-257 8.46e-106

Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441493  Cd Length: 222  Bit Score: 305.58  E-value: 8.46e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  32 EPHRHEGVFICR-GKEDALVTKNLVPGESVYGEKRVSIsegdDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLG 110
Cdd:COG1889    1 MEELFEGVYRVEfDGEKRLATKNLVPGKRVYGERLIKI----EGVEYREWDPRRSKLAAAILKGLKELPIKEGSKVLYLG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 111 AASGTTVSHVSDIVgPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVA 190
Cdd:COG1889   77 AASGTTVSHVSDIV-PEGPVYAVEFAPRVMRDLLEVAESRPNIIPILADARKPEEYAHVVEKVDVIYQDVAQPNQAEIAI 155

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768007356 191 LNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 257
Cdd:COG1889  156 KNADFFLKKGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEERGFEILEIIDLEPYHKDHLMVVARKK 222
 
Name Accession Description Interval E-value
PTZ00146 PTZ00146
fibrillarin; Provisional
 25-263 6.15e-173

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 478.46  E-value: 6.15e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  25 SGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI--SEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKP 102
Cdd:PTZ00146  53 GPGKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVedAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKP 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 103 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 182
Cdd:PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 183 PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 262
Cdd:PTZ00146 213 PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292


                 .
gi 768007356 263 K 263
Cdd:PTZ00146 293 K 293
Fibrillarin pfam01269
Fibrillarin;
31-258 7.51e-149

Fibrillarin;


Pssm-ID: 396019  Cd Length: 227  Bit Score: 414.69  E-value: 7.51e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356   31 VEPH-RHEGVFICR-GKEDA-LVTKNLVPGESVYGEKRVSISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 107
Cdd:pfam01269   1 VEPHeRFEGVYIVKlGDGDArLATKNLVPGESVYGEKLIKVEGE----EYRVWNPFRSKLAAAILKGLKEIPIKPGSKVL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  108 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 187
Cdd:pfam01269  77 YLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRMLVEMVDVIFADVAQPDQAR 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 768007356  188 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP 258
Cdd:pfam01269 157 ILALNARYFLKEGGYFMISIKARSIDVTKEPEEVFKREVRKLKEEGFKPIEQVHLEPYEKDHAMVVGKYKR 227
NOP1 COG1889
Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];
32-257 8.46e-106

Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441493  Cd Length: 222  Bit Score: 305.58  E-value: 8.46e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  32 EPHRHEGVFICR-GKEDALVTKNLVPGESVYGEKRVSIsegdDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLG 110
Cdd:COG1889    1 MEELFEGVYRVEfDGEKRLATKNLVPGKRVYGERLIKI----EGVEYREWDPRRSKLAAAILKGLKELPIKEGSKVLYLG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 111 AASGTTVSHVSDIVgPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVA 190
Cdd:COG1889   77 AASGTTVSHVSDIV-PEGPVYAVEFAPRVMRDLLEVAESRPNIIPILADARKPEEYAHVVEKVDVIYQDVAQPNQAEIAI 155

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 768007356 191 LNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 257
Cdd:COG1889  156 KNADFFLKKGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEERGFEILEIIDLEPYHKDHLMVVARKK 222
PRK04266 PRK04266
fibrillarin-like rRNA/tRNA 2'-O-methyltransferase;
30-257 7.43e-104

fibrillarin-like rRNA/tRNA 2'-O-methyltransferase;


Pssm-ID: 235267  Cd Length: 226  Bit Score: 301.03  E-value: 7.43e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  30 MVEPHRHEGVFICR--GKEDALVTKNLVPGESVYGEKRVSIsegdDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 107
Cdd:PRK04266   2 VKKKEIFEGVYEVEfeDGSKRLATKNLVPGKRVYGERLIKW----EGVEYREWNPRRSKLAAAILKGLKNFPIKKGSKVL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 108 YLGAASGTTVSHVSDIVGpDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 187
Cdd:PRK04266  78 YLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAE 156

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 188 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 257
Cdd:PRK04266 157 IAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226
Gcd14 COG2519
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 ...
 88-205 1.72e-06

tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 N-methylase Trm61 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 442009 [Multi-domain]  Cd Length: 249  Bit Score: 47.85  E-value: 1.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  88 AAAILGGVDqihIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFShrsgRDLINLAKKrtNiipvIEDARHPHKYR 167
Cdd:COG2519   80 AGYIIARLD---IFPGARVLEAGTGSGALTLALARAVGPEGKVYSYERR----EDFAEIARK--N----LERFGLPDNVE 146

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 768007356 168 MLIA---------MVDVIFADVAQPdqtrIVAL-NAHTFLRNGGHFVI 205
Cdd:COG2519  147 LKLGdiregidegDVDAVFLDMPDP----WEALeAVAKALKPGGVLVA 190
RlmE COG0293
23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and ...
 100-205 2.93e-05

23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and biogenesis]; 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 440062 [Multi-domain]  Cd Length: 208  Bit Score: 43.91  E-value: 2.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356 100 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVefshrsgrDLINLAKkrtniIPVIE----DARHPHKYRMLIAM--- 172
Cdd:COG0293   48 IKPGMRVVDLGAAPGGWSQVAAKRVGGKGRVIAL--------DLLPMEP-----IPGVEfiqgDFREDEVLDQLLEAlgg 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 768007356 173 --VDVIFADVA-------QPDQTRIVALN------AHTFLRNGGHFVI 205
Cdd:COG0293  115 rkVDLVLSDMApntsghkSVDHARSMYLVelaldfARKVLKPGGAFVV 162
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
73-209 5.79e-04

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 39.60  E-value: 5.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  73 DKIEYRAWnpfrSKLAAAILggvDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPdglVYAVEFShrsgRDLINLAKKRTN 152
Cdd:COG4976   24 EDLGYEAP----ALLAEELL---ARLPPGPFGRVLDLGCGTGLLGEALRPRGYR---LTGVDLS----EEMLAKAREKGV 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 768007356 153 IIPVIED-----ARHPHKYRmLIAMVDVIfadVAQPDQTRIVAlNAHTFLRNGGHFVISIKA 209
Cdd:COG4976   90 YDRLLVAdladlAEPDGRFD-LIVAADVL---TYLGDLAAVFA-GVARALKPGGLFIFSVED 146
PRK13942 PRK13942
protein-L-isoaspartate O-methyltransferase; Provisional
 96-134 2.04e-03

protein-L-isoaspartate O-methyltransferase; Provisional


Pssm-ID: 184409  Cd Length: 212  Bit Score: 38.46  E-value: 2.04e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 768007356  96 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 134
Cdd:PRK13942  70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIE 108
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 95-206 4.19e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 36.51  E-value: 4.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  95 VDQIHIKPGAKVLYLGAASGTTVSHVSDIvgpDGLVYAVEFShrsgRDLINLAKKR-----TNIIPVIEDARH---PHKY 166
Cdd:COG2226   15 LAALGLRPGARVLDLGCGTGRLALALAER---GARVTGVDIS----PEMLELARERaaeagLNVEFVVGDAEDlpfPDGS 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 768007356 167 rmliamVDVIFA-DVAQ--PDQTRIVAlNAHTFLRNGGHFVIS 206
Cdd:COG2226   88 ------FDLVISsFVLHhlPDPERALA-EIARVLKPGGRLVVV 123
PRK13943 PRK13943
protein-L-isoaspartate O-methyltransferase; Provisional
 98-214 4.72e-03

protein-L-isoaspartate O-methyltransferase; Provisional


Pssm-ID: 237568 [Multi-domain]  Cd Length: 322  Bit Score: 37.90  E-value: 4.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  98 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFShrsgRDLINLAKKRT------NIIPVIEDARHP-HKYrmli 170
Cdd:PRK13943  76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS----RKICEIAKRNVrrlgieNVIFVCGDGYYGvPEF---- 147

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 768007356 171 AMVDVIFADVAQPDqtriVALNAHTFLRNGGHFVISIKANCIDS 214
Cdd:PRK13943 148 APYDVIFVTVGVDE----VPETWFTQLKEGGRVIVPINLKLSRR 187
PCMT pfam01135
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT);
100-210 6.03e-03

Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT);


Pssm-ID: 395902 [Multi-domain]  Cd Length: 205  Bit Score: 36.96  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 768007356  100 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFShrsgRDLINLAKKR------TNIIPVIEDARHPHKYRmliAMV 173
Cdd:pfam01135  71 LKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHI----PELVEIARRNleklglENVIVVVGDGRQGWPEF---APY 143

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 768007356  174 DVIFADVAQPD--QTRIvalnahTFLRNGGHFVISIKAN 210
Cdd:pfam01135 144 DAIHVGAAAPEipEALI------DQLKEGGRLVIPVGPN 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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