|
Name |
Accession |
Description |
Interval |
E-value |
| BLM_N |
pfam16202 |
N-terminal region of Bloom syndrome protein; BLM_N is the very N-terminal region of chordate ... |
1-368 |
0e+00 |
|
N-terminal region of Bloom syndrome protein; BLM_N is the very N-terminal region of chordate Bloom syndrome proteins. The exact function is not known.
Pssm-ID: 465064 Cd Length: 370 Bit Score: 551.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 1 MAAVPQNNLQEQLERHSARTLNNKLSLSKPKFSGFTFKKKTSSDNNVSVTNVSVAKTPVLRNKDVNVTEDFSFSEPLPNT 80
Cdd:pfam16202 1 MAAVPQNNLQEQLERHSARKLNNKLSLSKPKSSGFTFKKKTSSGNDVSVTSVSVAKTPVLSDKDVNVTEAFSFSEPLPHT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 81 TNQQ-RVKDFFKNAPAGQETQRGGSKSLLPDFLQTPKEVVCTTQNTPTVKKSRDTALKKLEFSSSPDSLSTINDWDDMDD 159
Cdd:pfam16202 81 TNQQtRINDFFKNAPAGQQTKRAGSKPLLPDSSQTPQEVSCTTQVTPAVKKPPDAVFKKLEFSSSFDSFISLNDWDDMDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 160 FDTSETSKSFVTPPQSHFVRVSTAQKSKKGKRNFFKAQLYTTNTVKTDLPPPSSESEQIDLTEEQKDDSEWLSSDVICID 239
Cdd:pfam16202 161 FDTSGNSKAFVTPPRNHFVRVSTAQKSKKSKRNFSKAQLSKANTVKADLTPSSGESKQVDLTKEQLDDSEWLSSDVICID 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 240 DGPIAEVHINEDAQESDSLKTHLEDERDNSEKKKNLEEAELHSTEKVPCIEFDDDDYDTDFVPPSPEE-IISASSSSSKC 318
Cdd:pfam16202 241 DDPISEELINEDTQESHSLKTHLGDERDNSEKKKHLEETELHSVEKSPCVELNEDDYDIDFVPPSPEEeVISSSSSSLKC 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 767984940 319 LSTLKDLDTSDRKEDVLSTSKDLLSKPEKMSMQELNPETSTDCDARQISL 368
Cdd:pfam16202 321 FSMLKDLDTSDKEKDGLSTSEDLLSKPEKMTTQQPDQETSTDCDARQISL 370
|
|
| DEXHc_RecQ2_BLM |
cd18016 |
DEAH-box helicase domain of RecQ2; ATP-dependent DNA helicase Q2 (RecQ2, also called Bloom ... |
651-852 |
1.86e-145 |
|
DEAH-box helicase domain of RecQ2; ATP-dependent DNA helicase Q2 (RecQ2, also called Bloom syndrome protein homolog or BLM) is part of the RecQ family of highly conserved DNA repair helicases that is part of the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Mutations in RecQ2 cause Bloom syndrome.
Pssm-ID: 350774 [Multi-domain] Cd Length: 208 Bit Score: 428.86 E-value: 1.86e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 651 HTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSL 730
Cdd:cd18016 1 HSKEMMKIFHKKFGLHQFRTNQLEAINAALLGEDCFVLMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 731 DIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQD 810
Cdd:cd18016 81 DIPATYLTGDKTDAEATKIYLQLSKKDPIIKLLYVTPEKISASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 767984940 811 YKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 852
Cdd:cd18016 161 YKRLNMLRQKFPSVPMMALTATATPRVQKDILNQLKMLRPQV 202
|
|
| BDHCT_assoc |
pfam16204 |
BDHCT-box associated domain on Bloom syndrome protein; This family is found on Bloom ... |
425-647 |
1.26e-132 |
|
BDHCT-box associated domain on Bloom syndrome protein; This family is found on Bloom syndrome-associated DEAD-box helicases in higher eukaryotes. It lies between the BDHCT, and DEAD-box families, pfam08072 and pfam00270.
Pssm-ID: 465065 Cd Length: 223 Bit Score: 396.10 E-value: 1.26e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 425 GSLWRYRPDSLDGPMEGDSCPTGNSMKELNFSHLPSNSVSPGDCLLTTTLGKTGFSATRKNLFERPLFNTHLQKSFVSSN 504
Cdd:pfam16204 1 GSVWRCRPDSLGSPVKGDSCPTGNSVKELNFPHLPSNSLSTGECLLTTTPGKTGFSATTKNLSERPLFSSHLQKSFVSSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 505 WAETPRLGKKNESSYFPGNVLTSTAVKDQNKHTASINDLERETQPSYDIDNFDIDDFDDDDDWEDIMHNLAASKSSTAAY 584
Cdd:pfam16204 81 WAETPRTEKRNESSYFPGNVLTSTAVKDQNKHTASVNDLEREIQASCDIDNFDIDDFDDDDDWENIMHNLAASKSSTAAY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767984940 585 QPIKEGRPIKSVSERLSSAKTDCLPVSSTAQNINFSESIQNYTDKSAQNLASRNLKHERFQSL 647
Cdd:pfam16204 161 QPIKEGGPVKSVSERISSAKTNCLPVASTAQNKNFSESIQNYTDKSAQNLASRNLKHEHFQSL 223
|
|
| recQ_fam |
TIGR00614 |
ATP-dependent DNA helicase, RecQ family; All proteins in this family for which functions are ... |
657-852 |
2.77e-106 |
|
ATP-dependent DNA helicase, RecQ family; All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129701 [Multi-domain] Cd Length: 470 Bit Score: 337.13 E-value: 2.77e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 657 KIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATY 736
Cdd:TIGR00614 1 KILKKYFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALYSDGITLVISPLISLMEDQVLQLQALGIPATF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 737 LTGDKTDSEATNIYLQLskKDPIIKLLYVTPEKICASNRLISTLEnlyERKLLARFVIDEAHCVSQWGHDFRQDYKRMNM 816
Cdd:TIGR00614 81 LNSAQTKEQQLNVLTDL--KDGKIKLLYVTPEKISASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 767984940 817 LRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 852
Cdd:TIGR00614 156 LKQKFPNVPVMALTATASPSVREDILRQLNLLNPQI 191
|
|
| RecQ |
COG0514 |
Superfamily II DNA helicase RecQ [Replication, recombination and repair]; |
654-854 |
1.15e-78 |
|
Superfamily II DNA helicase RecQ [Replication, recombination and repair];
Pssm-ID: 440280 [Multi-domain] Cd Length: 489 Bit Score: 263.93 E-value: 1.15e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 654 EMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIP 733
Cdd:COG0514 4 DALEVLKRVFGYDSFRPGQEEIIEAVLAGRDALVVMPTGGGKSLCYQLPALLLPGLTLVVSPLIALMKDQVDALRAAGIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 734 ATYLTGDKTDSEATNIYLQLSKKDpiIKLLYVTPEkicasnRLIS--TLENLYERKlLARFVIDEAHCVSQWGHDFRQDY 811
Cdd:COG0514 84 AAFLNSSLSAEERREVLRALRAGE--LKLLYVAPE------RLLNprFLELLRRLK-ISLFAIDEAHCISQWGHDFRPDY 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767984940 812 KRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVIV 854
Cdd:COG0514 155 RRLGELRERLPNVPVLALTATATPRVRADIAEQLGLEDPRVFV 197
|
|
| PLN03137 |
PLN03137 |
ATP-dependent DNA helicase; Q4-like; Provisional |
643-845 |
6.89e-66 |
|
ATP-dependent DNA helicase; Q4-like; Provisional
Pssm-ID: 215597 [Multi-domain] Cd Length: 1195 Bit Score: 240.57 E-value: 6.89e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 643 RFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Cdd:PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQ 802
Cdd:PLN03137 516 QIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767984940 803 WGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL 845
Cdd:PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQAL 638
|
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
669-841 |
2.51e-30 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 117.34 E-value: 2.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 669 RTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPAC------VSPGVTVVISPLRSLIVDQVQKLTSLDIPATY-----L 737
Cdd:pfam00270 1 TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALealdklDNGPQALVLAPTRELAEQIYEELKKLGKGLGLkvaslL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 738 TGDKTDSEATNIylqlsKKdpiIKLLYVTPEKICASNRLISTLENLyerKLLarfVIDEAHCVSQWGhdFRQDYKRmnML 817
Cdd:pfam00270 81 GGDSRKEQLEKL-----KG---PDILVGTPGRLLDLLQERKLLKNL---KLL---VLDEAHRLLDMG--FGPDLEE--IL 142
|
170 180
....*....|....*....|....
gi 767984940 818 RQKFPSVPVMALTATAnPRVQKDI 841
Cdd:pfam00270 143 RRLPKKRQILLLSATL-PRNLEDL 165
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
661-841 |
5.22e-23 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 97.56 E-value: 5.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 661 KKFGLHNFRTNQLEAINAALLGE-DCFILMPTGGGKSLCYQLPA-----CVSPGVTVVISPLRSLIVDQVQKLTSL---- 730
Cdd:smart00487 2 EKFGFEPLRPYQKEAIEALLSGLrDVILAAPTGSGKTLAALLPAlealkRGKGGRVLVLVPTRELAEQWAEELKKLgpsl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 731 -DIPATYLTGDKTDSEATNIylqlskKDPIIKLLYVTPEKIcasnrLISTLENLYERKLLARFVIDEAHCVSQWGhdFRQ 809
Cdd:smart00487 82 gLKVVGLYGGDSKREQLRKL------ESGKTDILVTTPGRL-----LDLLENDKLSLSNVDLVILDEAHRLLDGG--FGD 148
|
170 180 190
....*....|....*....|....*....|..
gi 767984940 810 DYKRmnMLRQKFPSVPVMALTATANPRVQKDI 841
Cdd:smart00487 149 QLEK--LLKLLPKNVQLLLLSATPPEEIENLL 178
|
|
| BDHCT |
pfam08072 |
BDHCT (NUC031) domain; This is a C-terminal domain in Bloom's syndrome DEAD helicase subfamily. |
372-412 |
1.17e-21 |
|
BDHCT (NUC031) domain; This is a C-terminal domain in Bloom's syndrome DEAD helicase subfamily.
Pssm-ID: 462356 Cd Length: 41 Bit Score: 88.49 E-value: 1.17e-21
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 767984940 372 LIHVMEHICKLIDTIPDDKLKLLDCGNELLQQRNIRRKLLT 412
Cdd:pfam08072 1 LYSVMEEICKLVDTIPIHELKALSCGNELLQQRDIRRKLLA 41
|
|
| DpdF |
NF041063 |
protein DpdF; |
672-832 |
8.75e-21 |
|
protein DpdF;
Pssm-ID: 468990 [Multi-domain] Cd Length: 813 Bit Score: 98.06 E-value: 8.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALL---GEDCFILMPTGGGKSLCYQLPACVSP---GVTVVISPLRSLIVDQVQKLTSL-------DIPATYLT 738
Cdd:NF041063 145 QREAVRAALLappGSTLIVNLPTGSGKSLVAQAPALLASrqgGLTLVVVPTVALAIDQERRARELlrragpdLGGPLAWH 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 739 GDKTDSEATNIYLQLskKDPIIKLLYVTPEKICASnrLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLR 818
Cdd:NF041063 225 GGLSAEERAAIRQRI--RDGTQRILFTSPESLTGS--LRPALFDAAEAGLLRYLVVDEAHLVDQWGDGFRPEFQLLAGLR 300
|
170 180
....*....|....*....|.
gi 767984940 819 QKFPSVP-------VMALTAT 832
Cdd:NF041063 301 RSLLRLApsgrpfrTLLLSAT 321
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| BLM_N |
pfam16202 |
N-terminal region of Bloom syndrome protein; BLM_N is the very N-terminal region of chordate ... |
1-368 |
0e+00 |
|
N-terminal region of Bloom syndrome protein; BLM_N is the very N-terminal region of chordate Bloom syndrome proteins. The exact function is not known.
Pssm-ID: 465064 Cd Length: 370 Bit Score: 551.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 1 MAAVPQNNLQEQLERHSARTLNNKLSLSKPKFSGFTFKKKTSSDNNVSVTNVSVAKTPVLRNKDVNVTEDFSFSEPLPNT 80
Cdd:pfam16202 1 MAAVPQNNLQEQLERHSARKLNNKLSLSKPKSSGFTFKKKTSSGNDVSVTSVSVAKTPVLSDKDVNVTEAFSFSEPLPHT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 81 TNQQ-RVKDFFKNAPAGQETQRGGSKSLLPDFLQTPKEVVCTTQNTPTVKKSRDTALKKLEFSSSPDSLSTINDWDDMDD 159
Cdd:pfam16202 81 TNQQtRINDFFKNAPAGQQTKRAGSKPLLPDSSQTPQEVSCTTQVTPAVKKPPDAVFKKLEFSSSFDSFISLNDWDDMDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 160 FDTSETSKSFVTPPQSHFVRVSTAQKSKKGKRNFFKAQLYTTNTVKTDLPPPSSESEQIDLTEEQKDDSEWLSSDVICID 239
Cdd:pfam16202 161 FDTSGNSKAFVTPPRNHFVRVSTAQKSKKSKRNFSKAQLSKANTVKADLTPSSGESKQVDLTKEQLDDSEWLSSDVICID 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 240 DGPIAEVHINEDAQESDSLKTHLEDERDNSEKKKNLEEAELHSTEKVPCIEFDDDDYDTDFVPPSPEE-IISASSSSSKC 318
Cdd:pfam16202 241 DDPISEELINEDTQESHSLKTHLGDERDNSEKKKHLEETELHSVEKSPCVELNEDDYDIDFVPPSPEEeVISSSSSSLKC 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 767984940 319 LSTLKDLDTSDRKEDVLSTSKDLLSKPEKMSMQELNPETSTDCDARQISL 368
Cdd:pfam16202 321 FSMLKDLDTSDKEKDGLSTSEDLLSKPEKMTTQQPDQETSTDCDARQISL 370
|
|
| DEXHc_RecQ2_BLM |
cd18016 |
DEAH-box helicase domain of RecQ2; ATP-dependent DNA helicase Q2 (RecQ2, also called Bloom ... |
651-852 |
1.86e-145 |
|
DEAH-box helicase domain of RecQ2; ATP-dependent DNA helicase Q2 (RecQ2, also called Bloom syndrome protein homolog or BLM) is part of the RecQ family of highly conserved DNA repair helicases that is part of the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Mutations in RecQ2 cause Bloom syndrome.
Pssm-ID: 350774 [Multi-domain] Cd Length: 208 Bit Score: 428.86 E-value: 1.86e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 651 HTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSL 730
Cdd:cd18016 1 HSKEMMKIFHKKFGLHQFRTNQLEAINAALLGEDCFVLMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 731 DIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQD 810
Cdd:cd18016 81 DIPATYLTGDKTDAEATKIYLQLSKKDPIIKLLYVTPEKISASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 767984940 811 YKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 852
Cdd:cd18016 161 YKRLNMLRQKFPSVPMMALTATATPRVQKDILNQLKMLRPQV 202
|
|
| BDHCT_assoc |
pfam16204 |
BDHCT-box associated domain on Bloom syndrome protein; This family is found on Bloom ... |
425-647 |
1.26e-132 |
|
BDHCT-box associated domain on Bloom syndrome protein; This family is found on Bloom syndrome-associated DEAD-box helicases in higher eukaryotes. It lies between the BDHCT, and DEAD-box families, pfam08072 and pfam00270.
Pssm-ID: 465065 Cd Length: 223 Bit Score: 396.10 E-value: 1.26e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 425 GSLWRYRPDSLDGPMEGDSCPTGNSMKELNFSHLPSNSVSPGDCLLTTTLGKTGFSATRKNLFERPLFNTHLQKSFVSSN 504
Cdd:pfam16204 1 GSVWRCRPDSLGSPVKGDSCPTGNSVKELNFPHLPSNSLSTGECLLTTTPGKTGFSATTKNLSERPLFSSHLQKSFVSSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 505 WAETPRLGKKNESSYFPGNVLTSTAVKDQNKHTASINDLERETQPSYDIDNFDIDDFDDDDDWEDIMHNLAASKSSTAAY 584
Cdd:pfam16204 81 WAETPRTEKRNESSYFPGNVLTSTAVKDQNKHTASVNDLEREIQASCDIDNFDIDDFDDDDDWENIMHNLAASKSSTAAY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767984940 585 QPIKEGRPIKSVSERLSSAKTDCLPVSSTAQNINFSESIQNYTDKSAQNLASRNLKHERFQSL 647
Cdd:pfam16204 161 QPIKEGGPVKSVSERISSAKTNCLPVASTAQNKNFSESIQNYTDKSAQNLASRNLKHEHFQSL 223
|
|
| recQ_fam |
TIGR00614 |
ATP-dependent DNA helicase, RecQ family; All proteins in this family for which functions are ... |
657-852 |
2.77e-106 |
|
ATP-dependent DNA helicase, RecQ family; All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129701 [Multi-domain] Cd Length: 470 Bit Score: 337.13 E-value: 2.77e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 657 KIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATY 736
Cdd:TIGR00614 1 KILKKYFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALYSDGITLVISPLISLMEDQVLQLQALGIPATF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 737 LTGDKTDSEATNIYLQLskKDPIIKLLYVTPEKICASNRLISTLEnlyERKLLARFVIDEAHCVSQWGHDFRQDYKRMNM 816
Cdd:TIGR00614 81 LNSAQTKEQQLNVLTDL--KDGKIKLLYVTPEKISASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 767984940 817 LRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 852
Cdd:TIGR00614 156 LKQKFPNVPVMALTATASPSVREDILRQLNLLNPQI 191
|
|
| DEXHc_RecQ |
cd17920 |
DEXH-box helicase domain of RecQ family proteins; The RecQ family of the type II DEAD box ... |
657-855 |
1.38e-96 |
|
DEXH-box helicase domain of RecQ family proteins; The RecQ family of the type II DEAD box helicase superfamily is a family of highly conserved DNA repair helicases. This domain contains the ATP-binding region.
Pssm-ID: 350678 [Multi-domain] Cd Length: 200 Bit Score: 301.38 E-value: 1.38e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 657 KIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATY 736
Cdd:cd17920 2 QILKEVFGYDEFRPGQLEAINAVLAGRDVLVVMPTGGGKSLCYQLPALLLDGVTLVVSPLISLMQDQVDRLQQLGIRAAA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 737 LTGDKTDSEATNIYLQLskKDPIIKLLYVTPEKIcASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNM 816
Cdd:cd17920 82 LNSTLSPEEKREVLLRI--KNGQYKLLYVTPERL-LSPDFLELLQRLPERKRLALIVVDEAHCVSQWGHDFRPDYLRLGR 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 767984940 817 LRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVIVQ 855
Cdd:cd17920 159 LRRALPGVPILALTATATPEVREDILKRLGLRNPVIFRA 197
|
|
| DEXHc_RecQ1 |
cd18015 |
DEXH-box helicase domain of RecQ1; ATP-dependent DNA helicase Q1 (RecQ1) is part of the RecQ ... |
650-850 |
6.42e-82 |
|
DEXH-box helicase domain of RecQ1; ATP-dependent DNA helicase Q1 (RecQ1) is part of the RecQ family of highly conserved DNA repair helicases that is part of the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350773 [Multi-domain] Cd Length: 209 Bit Score: 262.69 E-value: 6.42e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 650 PHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTS 729
Cdd:cd18015 1 PWSGKVKDTLKNVFKLEKFRPLQLETINATMAGRDVFLVMPTGGGKSLCYQLPALCSDGFTLVVSPLISLMEDQLMALKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 730 LDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQ 809
Cdd:cd18015 81 LGISATMLNASSSKEHVKWVHAALTDKNSELKLLYVTPEKIAKSKRFMSKLEKAYNAGRLARIAIDEVHCCSQWGHDFRP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 767984940 810 DYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRP 850
Cdd:cd18015 161 DYKKLGILKRQFPNVPILGLTATATSKVLKDVQKILCIQKC 201
|
|
| RecQ |
COG0514 |
Superfamily II DNA helicase RecQ [Replication, recombination and repair]; |
654-854 |
1.15e-78 |
|
Superfamily II DNA helicase RecQ [Replication, recombination and repair];
Pssm-ID: 440280 [Multi-domain] Cd Length: 489 Bit Score: 263.93 E-value: 1.15e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 654 EMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIP 733
Cdd:COG0514 4 DALEVLKRVFGYDSFRPGQEEIIEAVLAGRDALVVMPTGGGKSLCYQLPALLLPGLTLVVSPLIALMKDQVDALRAAGIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 734 ATYLTGDKTDSEATNIYLQLSKKDpiIKLLYVTPEkicasnRLIS--TLENLYERKlLARFVIDEAHCVSQWGHDFRQDY 811
Cdd:COG0514 84 AAFLNSSLSAEERREVLRALRAGE--LKLLYVAPE------RLLNprFLELLRRLK-ISLFAIDEAHCISQWGHDFRPDY 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767984940 812 KRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVIV 854
Cdd:COG0514 155 RRLGELRERLPNVPVLALTATATPRVRADIAEQLGLEDPRVFV 197
|
|
| PLN03137 |
PLN03137 |
ATP-dependent DNA helicase; Q4-like; Provisional |
643-845 |
6.89e-66 |
|
ATP-dependent DNA helicase; Q4-like; Provisional
Pssm-ID: 215597 [Multi-domain] Cd Length: 1195 Bit Score: 240.57 E-value: 6.89e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 643 RFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Cdd:PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQ 802
Cdd:PLN03137 516 QIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767984940 803 WGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL 845
Cdd:PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQAL 638
|
|
| DEXHc_RecQ5 |
cd18014 |
DEAH-box helicase domain of RecQ5; ATP-dependent DNA helicase Q5 (RecQ5) is part of the RecQ ... |
657-853 |
8.46e-61 |
|
DEAH-box helicase domain of RecQ5; ATP-dependent DNA helicase Q5 (RecQ5) is part of the RecQ family of highly conserved DNA repair helicases that is part of the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350772 [Multi-domain] Cd Length: 205 Bit Score: 205.40 E-value: 8.46e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 657 KIFHKKFGLHNFRTN-QLEAINAALLGE-DCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPA 734
Cdd:cd18014 2 STLKKVFGHSDFKSPlQEKATMAVVKGNkDVFVCMPTGAGKSLCYQLPALLAKGITIVISPLIALIQDQVDHLKTLKIRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 735 TYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKiCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRM 814
Cdd:cd18014 82 DSLNSKLSAQERKRIIADLESEKPQTKFLYITPEM-AATSSFQPLLSSLVSRNLLSYLVVDEAHCVSQWGHDFRPDYLRL 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 767984940 815 NMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVI 853
Cdd:cd18014 161 GALRSRYGHVPWVALTATATPQVQEDIFAQLRLKKPVAI 199
|
|
| recQ |
TIGR01389 |
ATP-dependent DNA helicase RecQ; The ATP-dependent DNA helicase RecQ of E. coli is about 600 ... |
655-854 |
9.94e-61 |
|
ATP-dependent DNA helicase RecQ; The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273594 [Multi-domain] Cd Length: 591 Bit Score: 217.25 E-value: 9.94e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 655 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPA 734
Cdd:TIGR01389 1 AQQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 735 TYLTGDKTDSEATNIYLQLSKKDpiIKLLYVTPEKicasnrlistLENLYERKLLAR-----FVIDEAHCVSQWGHDFRQ 809
Cdd:TIGR01389 81 AYLNSTLSAKEQQDIEKALVNGE--LKLLYVAPER----------LEQDYFLNMLQRipialVAVDEAHCVSQWGHDFRP 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 767984940 810 DYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVIV 854
Cdd:TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI 193
|
|
| DEXHc_RecQ4-like |
cd18018 |
DEAH-box helicase domain of RecQ4 and similar proteins; ATP-dependent DNA helicase Q4 (RecQ4) ... |
656-856 |
1.12e-60 |
|
DEAH-box helicase domain of RecQ4 and similar proteins; ATP-dependent DNA helicase Q4 (RecQ4) is part of the RecQ family of highly conserved DNA repair helicases that is part of the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Mutations cause Rothmund-Thomson/RAPADILINO/Baller-Gerold syndrome.
Pssm-ID: 350776 [Multi-domain] Cd Length: 201 Bit Score: 204.80 E-value: 1.12e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 656 MKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACV----SPGVTVVISPLRSLIVDQVQKLTSLd 731
Cdd:cd18018 1 LKLLRRVFGHPSFRPGQEEAIARLLSGRSTLVVLPTGAGKSLCYQLPALLlrrrGPGLTLVVSPLIALMKDQVDALPRA- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 732 IPATYLTGDKTDSEATNIYLQLSKKDpiIKLLYVTPEKICASnrliSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDY 811
Cdd:cd18018 80 IKAAALNSSLTREERRRILEKLRAGE--VKILYVSPERLVNE----SFRELLRQTPPISLLVVDEAHCISEWSHNFRPDY 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 767984940 812 KRM-NMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVIVQP 856
Cdd:cd18018 154 LRLcRVLRELLGAPPVLALTATATKRVVEDIASHLGIPESGVVRGP 199
|
|
| PRK11057 |
PRK11057 |
ATP-dependent DNA helicase RecQ; Provisional |
656-852 |
2.10e-55 |
|
ATP-dependent DNA helicase RecQ; Provisional
Pssm-ID: 182933 [Multi-domain] Cd Length: 607 Bit Score: 202.64 E-value: 2.10e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 656 MKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPAT 735
Cdd:PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 736 YLTGDKTDSEATNIYLQLSKKDpiIKLLYVTPEKICASNrlisTLENLYERKlLARFVIDEAHCVSQWGHDFRQDYKRMN 815
Cdd:PRK11057 94 CLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDN----FLEHLAHWN-PALLAVDEAHCISQWGHDFRPEYAALG 166
|
170 180 190
....*....|....*....|....*....|....*..
gi 767984940 816 MLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 852
Cdd:PRK11057 167 QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203
|
|
| DEXHc_RecQ3 |
cd18017 |
DEAH-box helicase domain of RecQ3; DEAD-like helicase RecQ3 (also called Werner syndrome ... |
663-852 |
9.33e-49 |
|
DEAH-box helicase domain of RecQ3; DEAD-like helicase RecQ3 (also called Werner syndrome ATP-dependent helicase or WRN) is part of the RecQ family of highly conserved DNA repair helicases that is part of the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Mutations cause Werner's syndrome.
Pssm-ID: 350775 [Multi-domain] Cd Length: 193 Bit Score: 171.11 E-value: 9.33e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 663 FGLHNFRTNQLEAINAAL-LGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDK 741
Cdd:cd18017 8 FGHSSFRPVQWKVIRSVLeERRDNLVVMATGYGKSLCYQYPSVLLNSLTLVISPLISLMEDQVLQLVMSNIPACFLGSAQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 742 TDSEATNIylqlskKDPIIKLLYVTPEKICASNRLISTLENlyERKLLArfvIDEAHCVSQWGHDFRQDYKRMNMLRQKF 821
Cdd:cd18017 88 SQNVLDDI------KMGKIRVIYVTPEFVSKGLELLQQLRN--GITLIA---IDEAHCVSQWGHDFRSSYRHLGSIRNRL 156
|
170 180 190
....*....|....*....|....*....|.
gi 767984940 822 PSVPVMALTATANPRVQKDILTQLKILRPQV 852
Cdd:cd18017 157 PNVPIVALTATATPSVRDDIIKNLNLRNPQI 187
|
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
669-841 |
2.51e-30 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 117.34 E-value: 2.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 669 RTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPAC------VSPGVTVVISPLRSLIVDQVQKLTSLDIPATY-----L 737
Cdd:pfam00270 1 TPIQAEAIPAILEGRDVLVQAPTGSGKTLAFLLPALealdklDNGPQALVLAPTRELAEQIYEELKKLGKGLGLkvaslL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 738 TGDKTDSEATNIylqlsKKdpiIKLLYVTPEKICASNRLISTLENLyerKLLarfVIDEAHCVSQWGhdFRQDYKRmnML 817
Cdd:pfam00270 81 GGDSRKEQLEKL-----KG---PDILVGTPGRLLDLLQERKLLKNL---KLL---VLDEAHRLLDMG--FGPDLEE--IL 142
|
170 180
....*....|....*....|....
gi 767984940 818 RQKFPSVPVMALTATAnPRVQKDI 841
Cdd:pfam00270 143 RRLPKKRQILLLSATL-PRNLEDL 165
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
661-841 |
5.22e-23 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 97.56 E-value: 5.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 661 KKFGLHNFRTNQLEAINAALLGE-DCFILMPTGGGKSLCYQLPA-----CVSPGVTVVISPLRSLIVDQVQKLTSL---- 730
Cdd:smart00487 2 EKFGFEPLRPYQKEAIEALLSGLrDVILAAPTGSGKTLAALLPAlealkRGKGGRVLVLVPTRELAEQWAEELKKLgpsl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 731 -DIPATYLTGDKTDSEATNIylqlskKDPIIKLLYVTPEKIcasnrLISTLENLYERKLLARFVIDEAHCVSQWGhdFRQ 809
Cdd:smart00487 82 gLKVVGLYGGDSKREQLRKL------ESGKTDILVTTPGRL-----LDLLENDKLSLSNVDLVILDEAHRLLDGG--FGD 148
|
170 180 190
....*....|....*....|....*....|..
gi 767984940 810 DYKRmnMLRQKFPSVPVMALTATANPRVQKDI 841
Cdd:smart00487 149 QLEK--LLKLLPKNVQLLLLSATPPEEIENLL 178
|
|
| BDHCT |
pfam08072 |
BDHCT (NUC031) domain; This is a C-terminal domain in Bloom's syndrome DEAD helicase subfamily. |
372-412 |
1.17e-21 |
|
BDHCT (NUC031) domain; This is a C-terminal domain in Bloom's syndrome DEAD helicase subfamily.
Pssm-ID: 462356 Cd Length: 41 Bit Score: 88.49 E-value: 1.17e-21
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 767984940 372 LIHVMEHICKLIDTIPDDKLKLLDCGNELLQQRNIRRKLLT 412
Cdd:pfam08072 1 LYSVMEEICKLVDTIPIHELKALSCGNELLQQRDIRRKLLA 41
|
|
| DpdF |
NF041063 |
protein DpdF; |
672-832 |
8.75e-21 |
|
protein DpdF;
Pssm-ID: 468990 [Multi-domain] Cd Length: 813 Bit Score: 98.06 E-value: 8.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALL---GEDCFILMPTGGGKSLCYQLPACVSP---GVTVVISPLRSLIVDQVQKLTSL-------DIPATYLT 738
Cdd:NF041063 145 QREAVRAALLappGSTLIVNLPTGSGKSLVAQAPALLASrqgGLTLVVVPTVALAIDQERRARELlrragpdLGGPLAWH 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 739 GDKTDSEATNIYLQLskKDPIIKLLYVTPEKICASnrLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLR 818
Cdd:NF041063 225 GGLSAEERAAIRQRI--RDGTQRILFTSPESLTGS--LRPALFDAAEAGLLRYLVVDEAHLVDQWGDGFRPEFQLLAGLR 300
|
170 180
....*....|....*....|.
gi 767984940 819 QKFPSVP-------VMALTAT 832
Cdd:NF041063 301 RSLLRLApsgrpfrTLLLSAT 321
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
682-832 |
1.41e-16 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 77.44 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 682 GEDCFILMPTGGGKSLCYQLPA-CVS---PGVTVVISPLRSLIVDQ---VQKLTSLDIPATYLTGDKTDSEATNIYLQLS 754
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAAlLLLlkkGKKVLVLVPTKALALQTaerLRELFGPGIRVAVLVGGSSAEEREKNKLGDA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767984940 755 kkdpiiKLLYVTPEKIcasNRLISTLENLYERKlLARFVIDEAHCVSQWGHDFRQDYKRmnMLRQKFPSVPVMALTAT 832
Cdd:cd00046 81 ------DIIIATPDML---LNLLLREDRLFLKD-LKLIIVDEAHALLIDSRGALILDLA--VRKAGLKNAQVILLSAT 146
|
|
| YprA |
COG1205 |
ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain [Replication, ... |
661-836 |
2.68e-10 |
|
ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain [Replication, recombination and repair];
Pssm-ID: 440818 [Multi-domain] Cd Length: 758 Bit Score: 64.09 E-value: 2.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 661 KKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPA----CVSPGVTV-VISPLRSLIVDQVQKLTSL----- 730
Cdd:COG1205 50 KKRGIERLYSHQAEAIEAARAGKNVVIATPTASGKSLAYLLPVlealLEDPGATAlYLYPTKALARDQLRRLRELaealg 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 731 -DI-PATYlTGDkTDSEAtniylqlskKDPIIK---LLYVTPEKICAS-----NRLISTLENLyerkllaRF-VIDEAHC 799
Cdd:COG1205 130 lGVrVATY-DGD-TPPEE---------RRWIREhpdIVLTNPDMLHYGllphhTRWARFFRNL-------RYvVIDEAHT 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 767984940 800 ---V--SQWGHDFRqdykRMNMLRQKFPSVPVMALT-AT-ANPR 836
Cdd:COG1205 192 yrgVfgSHVANVLR----RLRRICRHYGSDPQFILAsATiGNPA 231
|
|
| DEXHc_Hrq1-like |
cd17923 |
DEAH-box helicase domain of Hrq1 and similar proteins; Yeast Hrq1, similar to RecQ4, plays a ... |
672-798 |
5.03e-10 |
|
DEAH-box helicase domain of Hrq1 and similar proteins; Yeast Hrq1, similar to RecQ4, plays a role in DNA inter-strand crosslink (ICL) repair and in telomere maintenance. Hrq1 lacks the Sld2-like domain found in RecQ4. Hrq1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350681 [Multi-domain] Cd Length: 182 Bit Score: 59.52 E-value: 5.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALLGEDCFILMPTGGGKSLCYQLP----ACVSPGVT-VVISPLRSLIVDQVQKLTSL------DI-PATYlTG 739
Cdd:cd17923 5 QAEAIEAARAGRSVVVTTGTASGKSLCYQLPileaLLRDPGSRaLYLYPTKALAQDQLRSLRELleqlglGIrVATY-DG 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767984940 740 DKTDSEATNIYLQLSkkdpiiKLLYVTPEKICAS-----NRLISTLENLyerkllaRF-VIDEAH 798
Cdd:cd17923 84 DTPREERRAIIRNPP------RILLTNPDMLHYAllphhDRWARFLRNL-------RYvVLDEAH 135
|
|
| DEXHc_LHR-like |
cd17922 |
DEXH-box helicase domain of LHR; Large helicase-related protein (LHR) is a DNA ... |
682-798 |
9.73e-10 |
|
DEXH-box helicase domain of LHR; Large helicase-related protein (LHR) is a DNA damage-inducible helicase that uses ATP hydrolysis to drive unidirectional 3'-to-5' translocation along single-stranded DNA (ssDNA) and to unwind RNA:DNA duplexes. This group also includes related bacterial and archaeal helicases from the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350680 [Multi-domain] Cd Length: 166 Bit Score: 58.36 E-value: 9.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 682 GEDCFILMPTGGGKSLCYQLPACVS------PGVTVV-ISPLRSLIVDQVQKLT------SLDIPATYLTGDKTDSEATn 748
Cdd:cd17922 1 GRNVLIAAPTGSGKTEAAFLPALSSladepeKGVQVLyISPLKALINDQERRLEepldeiDLEIPVAVRHGDTSQSEKA- 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 767984940 749 iylQLSKKDPIIklLYVTPEKICA---SNRLISTLENLyerkllaRFVI-DEAH 798
Cdd:cd17922 80 ---KQLKNPPGI--LITTPESLELllvNKKLRELFAGL-------RYVVvDEIH 121
|
|
| BRR2 |
COG1204 |
Replicative superfamily II helicase [Replication, recombination and repair]; |
643-835 |
2.00e-09 |
|
Replicative superfamily II helicase [Replication, recombination and repair];
Pssm-ID: 440817 [Multi-domain] Cd Length: 529 Bit Score: 61.06 E-value: 2.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 643 RFQSLSFPHTKEMMKifhkKFGLHNFRTNQLEAINAALLGEDCFIL-MPTGGGKSLCYQLPAC--VSPGVTVV-ISPLRS 718
Cdd:COG1204 2 KVAELPLEKVIEFLK----ERGIEELYPPQAEALEAGLLEGKNLVVsAPTASGKTLIAELAILkaLLNGGKALyIVPLRA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 719 LIvDQV-----QKLTSLDIPATYLTGDKTDSEAtniylQLSKKDPIIkllyVTPEKicasnrLISTLENlyERKLLARF- 792
Cdd:COG1204 78 LA-SEKyrefkRDFEELGIKVGVSTGDYDSDDE-----WLGRYDILV----ATPEK------LDSLLRN--GPSWLRDVd 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 767984940 793 --VIDEAHCVsqwghdfrQDYKR---MNM----LRQKFPSVPVMALTAT-ANP 835
Cdd:COG1204 140 lvVVDEAHLI--------DDESRgptLEVllarLRRLNPEAQIVALSATiGNA 184
|
|
| DEXHc_Ski2 |
cd17921 |
DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins; Ski2-like RNA helicases ... |
672-837 |
5.85e-08 |
|
DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins; Ski2-like RNA helicases play an important role in RNA degradation, processing, and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350679 [Multi-domain] Cd Length: 181 Bit Score: 53.42 E-value: 5.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALLGEDCFIL-MPTGGGKSLCYQLPA----CVSPGVTVVISPLRSLiVDQV-----QKLTSLDIPATYLTGDK 741
Cdd:cd17921 6 QREALRALYLSGDSVLVsAPTSSGKTLIAELAIlralATSGGKAVYIAPTRAL-VNQKeadlrERFGPLGKNVGLLTGDP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 742 TDSeatniYLQLSKKDPIIkllyVTPEKICAsnrLISTLENLYERKLLArFVIDEAHCVSqwghdfrqDYKR-------M 814
Cdd:cd17921 85 SVN-----KLLLAEADILV----ATPEKLDL---LLRNGGERLIQDVRL-VVVDEAHLIG--------DGERgvvlellL 143
|
170 180
....*....|....*....|....
gi 767984940 815 NMLRQKFPSVPVMALTAT-ANPRV 837
Cdd:cd17921 144 SRLLRINKNARFVGLSATlPNAED 167
|
|
| DEXHc_HFM1 |
cd18023 |
DEXH-box helicase domain of ATP-dependent DNA helicase HFM1; HFM1 is a type II DEAD box ... |
667-833 |
1.01e-05 |
|
DEXH-box helicase domain of ATP-dependent DNA helicase HFM1; HFM1 is a type II DEAD box helicase, required for crossover formation and complete synapsis of homologous chromosomes during meiosis. HFM1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350781 [Multi-domain] Cd Length: 206 Bit Score: 47.35 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 667 NFRTNQLEAINAALLGEDCFIL-MPTGGGKSLCYQL--------PACVSPG--VTVVISPLRSLIVDQV----QKLTSLD 731
Cdd:cd18023 1 YFNRIQSEVFPDLLYSDKNFVVsAPTGSGKTVLFELailrllkeRNPLPWGnrKVVYIAPIKALCSEKYddwkEKFGPLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 732 IPATYLTGDkTDSEATNiylQLSKKDPIIkllyVTPEKICASNRLISTLENLYErkLLARFVIDEAHCVSQW-GHDFRQD 810
Cdd:cd18023 81 LSCAELTGD-TEMDDTF---EIQDADIIL----TTPEKWDSMTRRWRDNGNLVQ--LVALVLIDEVHIIKENrGATLEVV 150
|
170 180 190
....*....|....*....|....*....|
gi 767984940 811 YKRMNML-------RQKFPSVPVMALTATA 833
Cdd:cd18023 151 VSRMKTLsssselrGSTVRPMRFVAVSATI 180
|
|
| DEXHc_archSki2 |
cd18028 |
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play ... |
672-835 |
2.12e-04 |
|
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play an important role in RNA degradation, processing and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350786 [Multi-domain] Cd Length: 177 Bit Score: 43.09 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALL-GEDCFILMPTGGGKSLCYQL---PACVSPGVTVVISPLRSLIVDQV---QKLTSLDIPATYLTGDkTDS 744
Cdd:cd18028 6 QAEAVRAGLLkGENLLISIPTASGKTLIAEMamvNTLLEGGKALYLVPLRALASEKYeefKKLEEIGLKVGISTGD-YDE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 745 EATNiylqLSKKDPIIkllyVTPEKICASNRLISTLENlyerkLLARFVIDEAHCVSqwghdfrqDYKR-------MNML 817
Cdd:cd18028 85 DDEW----LGDYDIIV----ATYEKFDSLLRHSPSWLR-----DVGVVVVDEIHLIS--------DEERgptlesiVARL 143
|
170
....*....|....*....
gi 767984940 818 RQKFPSVPVMALTATA-NP 835
Cdd:cd18028 144 RRLNPNTQIIGLSATIgNP 162
|
|
| DEXHc_RIG-I |
cd17927 |
DEXH-box helicase domain of DEAD-like helicase RIG-I family proteins; Members of the RIG-I ... |
668-832 |
4.12e-04 |
|
DEXH-box helicase domain of DEAD-like helicase RIG-I family proteins; Members of the RIG-I family include FANCM, dicer, Hef, and the RIG-I-like receptors. Fanconi anemia group M (FANCM) protein is a DNA-dependent ATPase component of the Fanconi anemia (FA) core complex required for the normal activation of the FA pathway, leading to monoubiquitination of the FANCI-FANCD2 complex in response to DNA damage, cellular resistance to DNA cross-linking drugs, and prevention of chromosomal breakage. Dicer ribonucleases cleave double-stranded RNA (dsRNA) precursors to generate microRNAs (miRNAs) and small interfering RNAs (siRNAs). Hef (helicase-associated endonuclease fork-structure) is involved in stalled replication fork repair. RIG-I-like receptors (RLRs) sense cytoplasmic viral RNA and comprises RIG-I, RLR-2/MDA5 (melanoma differentiation-associated protein 5) and RLR-3/LGP2 (laboratory of genetics and physiology 2). The RIG-I family is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350685 [Multi-domain] Cd Length: 201 Bit Score: 42.42 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 668 FRTNQLEAINAALLGEDCFILMPTGGGKS-----LC----YQLPaCVSPGVTVVISPLRSLIVDQVQKL-TSLDIPAtYL 737
Cdd:cd17927 3 PRNYQLELAQPALKGKNTIICLPTGSGKTfvavlICehhlKKFP-AGRKGKVVFLANKVPLVEQQKEVFrKHFERPG-YK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 738 TGDKTDSEATNIYLQLSKKDPiiKLLYVTPEkICASNRLISTLENLYERKLLarfVIDEAHCVSQwGHDFRQDYKRmnML 817
Cdd:cd17927 81 VTGLSGDTSENVSVEQIVESS--DVIIVTPQ-ILVNDLKSGTIVSLSDFSLL---VFDECHNTTK-NHPYNEIMFR--YL 151
|
170
....*....|....*....
gi 767984940 818 RQKFPSVP----VMALTAT 832
Cdd:cd17927 152 DQKLGSSGplpqILGLTAS 170
|
|
| DEADc |
cd00268 |
DEAD-box helicase domain of DEAD box helicases; DEAD-box helicases comprise a diverse family ... |
672-853 |
8.92e-04 |
|
DEAD-box helicase domain of DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Pssm-ID: 350669 [Multi-domain] Cd Length: 196 Bit Score: 41.27 E-value: 8.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALLGEDCFILMPTGGGKSLCYQLPACV-----------SPGVtVVISPLRSL---IVDQVQKLTS-LDIPATY 736
Cdd:cd00268 17 QAQAIPLILSGRDVIGQAQTGSGKTLAFLLPILEkllpepkkkgrGPQA-LVLAPTRELamqIAEVARKLGKgTGLKVAA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 737 LTGdktdseATNIYLQLSKKDPIIKLLYVTPEkicasnRListLENLYERKLLAR----FVIDEAhcvsqwghD------ 806
Cdd:cd00268 96 IYG------GAPIKKQIEALKKGPDIVVGTPG------RL---LDLIERGKLDLSnvkyLVLDEA--------Drmldmg 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767984940 807 FRQD----YKRMNMLRQkfpsvpVMALTATANPRVQKdiLTQLKILRPQVI 853
Cdd:cd00268 153 FEEDvekiLSALPKDRQ------TLLFSATLPEEVKE--LAKKFLKNPVRI 195
|
|
| DEXHc_ASCC3_2 |
cd18022 |
C-terminal DEXH-box helicase domain of Activating signal cointegrator 1 complex subunit 3; ... |
684-836 |
1.79e-03 |
|
C-terminal DEXH-box helicase domain of Activating signal cointegrator 1 complex subunit 3; Activating signal cointegrator 1 complex subunit 3 (ASCC3) is a type II DEAD box helicase that plays a role in the repair of N-alkylated nucleotides. ASCC3 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350780 [Multi-domain] Cd Length: 189 Bit Score: 40.43 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 684 DCFILM--PTGGGKSLCYQLPAC----VSPGVTVV-ISPLRSLIVDQVQ----KLT-SLDIPATYLTGDKT-DSEAtniy 750
Cdd:cd18022 17 DNNVLLgaPTGSGKTIAAELAMFrafnKYPGSKVVyIAPLKALVRERVDdwkkRFEeKLGKKVVELTGDVTpDMKA---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 751 lqLSKKDPIIkllyVTPEKICASNRLISTLENLYERKLLarfVIDEAHCV-SQWGHDFRQDYKRMNML-RQKFPSVPVMA 828
Cdd:cd18022 93 --LADADIII----TTPEKWDGISRSWQTREYVQQVSLI---IIDEIHLLgSDRGPVLEVIVSRMNYIsSQTEKPVRLVG 163
|
....*....
gi 767984940 829 L-TATANPR 836
Cdd:cd18022 164 LsTALANAG 172
|
|
| DinG |
COG1199 |
Rad3-related DNA helicase DinG [Replication, recombination and repair]; |
657-739 |
2.08e-03 |
|
Rad3-related DNA helicase DinG [Replication, recombination and repair];
Pssm-ID: 440812 [Multi-domain] Cd Length: 629 Bit Score: 41.83 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 657 KIFHKKFGLHNFRTNQLEAINA---ALL-GEDCFILMPTGGGKSLCYQLPA---CVSPGVTVVIS----PLRSLIVDQ-- 723
Cdd:COG1199 4 GLLALAFPGFEPRPGQREMAEAvarALAeGRHLLIEAGTGTGKTLAYLVPAllaARETGKKVVIStatkALQEQLVEKdl 83
|
90
....*....|....*...
gi 767984940 724 --VQKLTSLDIPATYLTG 739
Cdd:COG1199 84 plLRKALGLPLRVALLKG 101
|
|
| DEADc_DDX56 |
cd17961 |
DEAD-box helicase domain of DEAD box protein 56; DDX56 is a helicase required for assembly of ... |
672-854 |
3.81e-03 |
|
DEAD-box helicase domain of DEAD box protein 56; DDX56 is a helicase required for assembly of infectious West Nile virus particles. New research suggests that DDX56 relocalizes to the site of virus assembly during WNV infection and that its interaction with WNV capsid in the cytoplasm may occur transiently during virion morphogenesis. DDX56 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Pssm-ID: 350719 [Multi-domain] Cd Length: 206 Bit Score: 39.49 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALLGEDCFILMPTGGGKSLCYQLP-----------ACVSPGVTVVI-SPLRSLiVDQVQK-LTSLdipATYLT 738
Cdd:cd17961 21 QSKAIPLALEGKDILARARTGSGKTAAYALPiiqkilkakaeSGEEQGTRALIlVPTREL-AQQVSKvLEQL---TAYCR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 739 GDktdSEATNIYLQLSKKDpIIKLLYVTPEKICAS-NRLISTLE--NLYERKLLARFVIDEAHCVSQWGHDfrqdyKRMN 815
Cdd:cd17961 97 KD---VRVVNLSASSSDSV-QRALLAEKPDIVVSTpARLLSHLEsgSLLLLSTLKYLVIDEADLVLSYGYE-----EDLK 167
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767984940 816 MLRQKFPSVPVMALT-ATANPRVQKdiLTQLkILRPQVIV 854
Cdd:cd17961 168 SLLSYLPKNYQTFLMsATLSEDVEA--LKKL-VLHNPAIL 204
|
|
| PRK11192 |
PRK11192 |
ATP-dependent RNA helicase SrmB; Provisional |
672-739 |
9.25e-03 |
|
ATP-dependent RNA helicase SrmB; Provisional
Pssm-ID: 236877 [Multi-domain] Cd Length: 434 Bit Score: 39.54 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767984940 672 QLEAINAALLGEDCFILMPTGGGKSLCYQLPAC----------VSPGVTVVISPLRSL---IVDQVQKL---TSLDIpAT 735
Cdd:PRK11192 28 QAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALqhlldfprrkSGPPRILILTPTRELamqVADQARELakhTHLDI-AT 106
|
....
gi 767984940 736 yLTG 739
Cdd:PRK11192 107 -ITG 109
|
|
| |
