|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
84-329 |
2.14e-34 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 130.03 E-value: 2.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 84 VACIPKSSQFFSASRDRMVMMWDLHgSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSR 163
Cdd:COG2319 168 VAFSPDGKLLASGSDDGTVRLWDLA-TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHS 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 164 NVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTR 243
Cdd:COG2319 247 GSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLAS-----GSDDGTVRLWDL-ATG 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 244 NRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRG 322
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDG----KTLASGSDDGTVRLWDLATGELLRTLT-GHTGAVTSVAFsPDGRTLASGSADGT 395
|
....*..
gi 767956194 323 IHLLRMD 329
Cdd:COG2319 396 VRLWDLA 402
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
61-325 |
3.57e-32 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 121.67 E-value: 3.57e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 61 HMDTVSVVAAL-NSDLCVSGGKDK-------------------------VACIPKSSQFFSASRDRMVMMWDLHgSSQPR 114
Cdd:cd00200 8 HTGGVTCVAFSpDGKLLATGSGDGtikvwdletgellrtlkghtgpvrdVAASADGTYLASGSSDKTIRLWDLE-TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 115 QQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRG 194
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 195 LQVAHMFPAkqHIQTYCEVSV--DGHKCISCSNGfggegCEATLWDLRQTRNrICEYKGHFQTVASCVFLPRALalmpLI 272
Cdd:cd00200 167 GKCVATLTG--HTGEVNSVAFspDGEKLLSSSSD-----GTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY----LL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 767956194 273 ATSSHDCKVKIWNQDTGACLFTLSLdGSGPLTSLAV-GDAISLLCASFNRGIHL 325
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWsPDGKRLASGSADGTIRI 287
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
110-149 |
7.25e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.38 E-value: 7.25e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 767956194 110 SSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 149
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
111-149 |
4.48e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 43.10 E-value: 4.48e-06
10 20 30
....*....|....*....|....*....|....*....
gi 767956194 111 SQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 149
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
90-241 |
6.92e-06 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 47.58 E-value: 6.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 90 SSQFFSASRDRMVMMWDL------HGSSQPRQQLCGHAMVVTGLAVSPDSSQ-LCTGSRDNTLLLWDVVTGQSVERASVS 162
Cdd:PTZ00421 88 PQKLFTASEDGTIMGWGIpeegltQNISDPIVHLQGHTKKVGIVSFHPSAMNvLASAGADMVVNVWDVERGKAVEVIKCH 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 163 RNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQhiqtycevSVDGHKCISC--SNGFGGEGC------EA 234
Cdd:PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--------SAKSQRCLWAkrKDLIITLGCsksqqrQI 239
|
....*..
gi 767956194 235 TLWDLRQ 241
Cdd:PTZ00421 240 MLWDTRK 246
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
84-329 |
2.14e-34 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 130.03 E-value: 2.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 84 VACIPKSSQFFSASRDRMVMMWDLHgSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSR 163
Cdd:COG2319 168 VAFSPDGKLLASGSDDGTVRLWDLA-TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHS 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 164 NVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTR 243
Cdd:COG2319 247 GSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLAS-----GSDDGTVRLWDL-ATG 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 244 NRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRG 322
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDG----KTLASGSDDGTVRLWDLATGELLRTLT-GHTGAVTSVAFsPDGRTLASGSADGT 395
|
....*..
gi 767956194 323 IHLLRMD 329
Cdd:COG2319 396 VRLWDLA 402
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
84-308 |
2.27e-34 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 130.03 E-value: 2.27e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 84 VACIPKSSQFFSASRDRMVMMWDLHgSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSR 163
Cdd:COG2319 126 VAFSPDGKTLASGSADGTVRLWDLA-TGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHT 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 164 NVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTR 243
Cdd:COG2319 205 GAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLAS-----GSADGTVRLWDL-ATG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956194 244 NRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV 308
Cdd:COG2319 279 ELLRTLTGHSGGVNSVAFSPDG----KLLASGSDDGTVRLWDLATGKLLRTLT-GHTGAVRSVAF 338
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
61-325 |
3.57e-32 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 121.67 E-value: 3.57e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 61 HMDTVSVVAAL-NSDLCVSGGKDK-------------------------VACIPKSSQFFSASRDRMVMMWDLHgSSQPR 114
Cdd:cd00200 8 HTGGVTCVAFSpDGKLLATGSGDGtikvwdletgellrtlkghtgpvrdVAASADGTYLASGSSDKTIRLWDLE-TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 115 QQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRG 194
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 195 LQVAHMFPAkqHIQTYCEVSV--DGHKCISCSNGfggegCEATLWDLRQTRNrICEYKGHFQTVASCVFLPRALalmpLI 272
Cdd:cd00200 167 GKCVATLTG--HTGEVNSVAFspDGEKLLSSSSD-----GTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY----LL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 767956194 273 ATSSHDCKVKIWNQDTGACLFTLSLdGSGPLTSLAV-GDAISLLCASFNRGIHL 325
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWsPDGKRLASGSADGTIRI 287
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
84-288 |
4.92e-31 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 121.17 E-value: 4.92e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 84 VACIPKSSQFFSASRDRMVMMWDLHGSsQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSR 163
Cdd:COG2319 210 VAFSPDGKLLASGSADGTVRLWDLATG-KLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHS 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 164 NVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTR 243
Cdd:COG2319 289 GGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLAS-----GSDDGTVRLWDL-ATG 362
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 767956194 244 NRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWNQDT 288
Cdd:COG2319 363 ELLRTLTGHTGAVTSVAFSPDG----RTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
61-285 |
3.62e-26 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 105.49 E-value: 3.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 61 HMDTVSVVAAL-NSDLCVSGGKDK-------------------------VACIPKSSQFFSASRDRMVMMWDLHgSSQPR 114
Cdd:cd00200 50 HTGPVRDVAASaDGTYLASGSSDKtirlwdletgecvrtltghtsyvssVAFSPDGRILSSSSRDKTIKVWDVE-TGKCL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 115 QQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRG 194
Cdd:cd00200 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 195 LQVAHMFPAKQHIQTYCEVSVDGHKCISCSngfggEGCEATLWDLRqTRNRICEYKGHFQTVASCVFLPRALALmpliAT 274
Cdd:cd00200 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGS-----EDGTIRVWDLR-TGECVQTLSGHTNSVTSLAWSPDGKRL----AS 278
|
250
....*....|.
gi 767956194 275 SSHDCKVKIWN 285
Cdd:cd00200 279 GSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
84-325 |
2.09e-24 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 102.68 E-value: 2.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 84 VACIPKSSQFFSASRDRMVMMWDLhGSSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSR 163
Cdd:COG2319 42 LAASPDGARLAAGAGDLTLLLLDA-AAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHT 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 164 NVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLRqTR 243
Cdd:COG2319 121 GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLAS-----GSDDGTVRLWDLA-TG 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 244 NRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRG 322
Cdd:COG2319 195 KLLRTLTGHTGAVRSVAFSPDG----KLLASGSADGTVRLWDLATGKLLRTLT-GHSGSVRSVAFsPDGRLLASGSADGT 269
|
...
gi 767956194 323 IHL 325
Cdd:COG2319 270 VRL 272
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
113-325 |
4.24e-23 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 97.02 E-value: 4.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 113 PRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDS 192
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 193 RGLQVAHMFpaKQHIQ--TYCEVSVDGHkCISCSngfgGEGCEATLWDLRQTRNRICeYKGHFQTVASCVFLPRALalmp 270
Cdd:cd00200 81 ETGECVRTL--TGHTSyvSSVAFSPDGR-ILSSS----SRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGT---- 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956194 271 LIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHL 325
Cdd:cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFsPDGEKLLSSSSDGTIKL 203
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
88-325 |
2.76e-18 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 84.96 E-value: 2.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 88 PKSSQFFSASRDRMVMMWDLHGSSQPRQQLcGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVT 167
Cdd:COG2319 4 ADGAALAAASADLALALLAAALGALLLLLL-GLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 168 HLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRIC 247
Cdd:COG2319 83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLAS-----GSADGTVRLWDL-ATGKLLR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 248 EYKGHFQTVASCVFLP--RalalmpLIATSSHDCKVKIWNQDTGACLFTLSlDGSGPLTSLavgdAIS-----LLCASFN 320
Cdd:COG2319 157 TLTGHSGAVTSVAFSPdgK------LLASGSDDGTVRLWDLATGKLLRTLT-GHTGAVRSV----AFSpdgklLASGSAD 225
|
....*
gi 767956194 321 RGIHL 325
Cdd:COG2319 226 GTVRL 230
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
128-325 |
5.89e-13 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 69.17 E-value: 5.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 128 AVSPDSSQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHI 207
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 208 QTYCEVSVDGHKCIScsngfGGEGCEATLWDLrQTRNRICEYKGHFQTVASCVFLPRALalmpLIATSSHDCKVKIWNQD 287
Cdd:COG2319 81 VLSVAFSPDGRLLAS-----ASADGTVRLWDL-ATGLLLRTLTGHTGAVRSVAFSPDGK----TLASGSADGTVRLWDLA 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 767956194 288 TGACLFTLSlDGSGPLTSLAV-GDAISLLCASFNRGIHL 325
Cdd:COG2319 151 TGKLLRTLT-GHSGAVTSVAFsPDGKLLASGSDDGTVRL 188
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
110-149 |
7.25e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 45.38 E-value: 7.25e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 767956194 110 SSQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 149
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
111-149 |
4.48e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 43.10 E-value: 4.48e-06
10 20 30
....*....|....*....|....*....|....*....
gi 767956194 111 SQPRQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWD 149
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
90-241 |
6.92e-06 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 47.58 E-value: 6.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 90 SSQFFSASRDRMVMMWDL------HGSSQPRQQLCGHAMVVTGLAVSPDSSQ-LCTGSRDNTLLLWDVVTGQSVERASVS 162
Cdd:PTZ00421 88 PQKLFTASEDGTIMGWGIpeegltQNISDPIVHLQGHTKKVGIVSFHPSAMNvLASAGADMVVNVWDVERGKAVEVIKCH 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 163 RNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQhiqtycevSVDGHKCISC--SNGFGGEGC------EA 234
Cdd:PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--------SAKSQRCLWAkrKDLIITLGCsksqqrQI 239
|
....*..
gi 767956194 235 TLWDLRQ 241
Cdd:PTZ00421 240 MLWDTRK 246
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
90-171 |
1.01e-05 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 46.60 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 90 SSQFFSASRDRMVmmwdlhgssqprQQLCGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVVTGQSVERAsvSRNVVTHL 169
Cdd:pfam20426 105 SFQVISLNDGRMV------------QSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGRSSEKR--SRNTQTEF 170
|
..
gi 767956194 170 CW 171
Cdd:pfam20426 171 PR 172
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
134-306 |
3.77e-04 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 42.38 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 134 SQLCTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQT-SEDKTLRLWD-SRGLQVAHMfPAKQHIqtyC 211
Cdd:PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASgSDDGSVKLWSiNQGVSIGTI-KTKANI---C 621
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956194 212 EVSVDGHKCISCSngFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRAlalmpLIATSSHDCKVKIWNqdtgac 291
Cdd:PLN00181 622 CVQFPSESGRSLA--FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSS-----TLVSSSTDNTLKLWD------ 688
|
170
....*....|....*....
gi 767956194 292 lftLSLDGSG----PLTSL 306
Cdd:PLN00181 689 ---LSMSISGinetPLHSF 704
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
242-285 |
2.96e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 34.98 E-value: 2.96e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 767956194 242 TRNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWN 285
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDG----KYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
152-191 |
7.19e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 33.83 E-value: 7.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 767956194 152 TGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWD 191
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
243-285 |
7.52e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 33.86 E-value: 7.52e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 767956194 243 RNRICEYKGHFQTVASCVFLPRAlalmPLIATSSHDCKVKIWN 285
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDG----KLLASGSDDGTVKVWD 39
|
|
|