leucine-rich repeat-containing protein 71 isoform X11 [Homo sapiens]
leucine-rich repeat domain-containing protein( domain architecture ID 1006001)
leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
RNA1 super family | cl34950 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
138-306 | 1.53e-21 | ||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; The actual alignment was detected with superfamily member COG5238: Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 94.86 E-value: 1.53e-21
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Name | Accession | Description | Interval | E-value | ||||
RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
138-306 | 1.53e-21 | ||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 94.86 E-value: 1.53e-21
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
161-308 | 2.05e-14 | ||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 72.77 E-value: 2.05e-14
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LRR_6 | pfam13516 | Leucine Rich repeat; |
251-273 | 2.09e-04 | ||||
Leucine Rich repeat; Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 37.99 E-value: 2.09e-04
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LRR_RI | smart00368 | Leucine rich repeat, ribonuclease inhibitor type; |
279-306 | 6.07e-04 | ||||
Leucine rich repeat, ribonuclease inhibitor type; Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 36.62 E-value: 6.07e-04
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Name | Accession | Description | Interval | E-value | ||||
RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
138-306 | 1.53e-21 | ||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 94.86 E-value: 1.53e-21
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
137-304 | 2.29e-16 | ||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 79.45 E-value: 2.29e-16
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
161-308 | 2.05e-14 | ||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 72.77 E-value: 2.05e-14
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
159-307 | 2.68e-12 | ||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 66.61 E-value: 2.68e-12
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
218-305 | 1.18e-10 | ||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 62.11 E-value: 1.18e-10
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
162-305 | 4.75e-10 | ||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 60.06 E-value: 4.75e-10
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
236-305 | 1.34e-05 | ||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 46.71 E-value: 1.34e-05
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
162-294 | 5.26e-05 | ||||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 44.92 E-value: 5.26e-05
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LRR_6 | pfam13516 | Leucine Rich repeat; |
251-273 | 2.09e-04 | ||||
Leucine Rich repeat; Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 37.99 E-value: 2.09e-04
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
162-330 | 3.31e-04 | ||||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 42.23 E-value: 3.31e-04
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LRR_RI | smart00368 | Leucine rich repeat, ribonuclease inhibitor type; |
279-306 | 6.07e-04 | ||||
Leucine rich repeat, ribonuclease inhibitor type; Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 36.62 E-value: 6.07e-04
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LRR_RI | smart00368 | Leucine rich repeat, ribonuclease inhibitor type; |
251-277 | 3.13e-03 | ||||
Leucine rich repeat, ribonuclease inhibitor type; Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 34.69 E-value: 3.13e-03
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Blast search parameters | ||||
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