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Conserved domains on  [gi|755546266|ref|XP_011242953|]
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high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B isoform X11 [Mus musculus]

Protein Classification

PAS and HDc domain-containing protein( domain architecture ID 12140958)

PAS and HDc domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PDEase_I pfam00233
3'5'-cyclic nucleotide phosphodiesterase;
376-623 5.55e-99

3'5'-cyclic nucleotide phosphodiesterase;


:

Pssm-ID: 459723  Cd Length: 238  Bit Score: 302.55  E-value: 5.55e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  376 YHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAF 455
Cdd:pfam00233   1 YHNWRHAFDVTQTMYYLLKTGKLKEVLTDLEILALLIAALCHDVDHPGTNNAFLIKTKSPLAILYNDSSVLENHHCATAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  456 QLtVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKplaaESEGSDCEcnptgkNFPENQILIK 535
Cdd:pfam00233  81 QI-LQDEECNIFSNLSDEEYKEVRKLIISLILATDMAKHFELLKKFKSLLES----KKTLDFLE------NEEDRRLLLL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  536 RMMIKCADVANPCRPLDLCIEWAGRISEEYFAQTDEEKRQGLPvVMPVFDRN-TCSIPKSQISFIDYFITDMFDAW-DAF 613
Cdd:pfam00233 150 SMLIKAADISNPTRPWEISKKWADLVAEEFFRQGDLEKELGLP-VSPLMDREkKTSLPKSQIGFIDFIVLPLFEALaKLF 228

                         250
                  ....*....|
gi 755546266  614 AHLPALMQHL 623
Cdd:pfam00233 229 PELQPLLDQL 238
PAS COG2202
PAS domain [Signal transduction mechanisms];
35-138 3.79e-17

PAS domain [Signal transduction mechanisms];


:

Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 81.61  E-value: 3.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLpKSDKNRADLLDTINTCIKKGKEWQGVYYARRKSG 114
Cdd:COG2202   15 ALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDL-LPPEDDDEFLELLRAALAGGGVWRGELRNRRKDG 93

                         90       100
                 ....*....|....*....|....
gi 755546266 115 DSIQQHVKITPVIGQGGKIRHFVS 138
Cdd:COG2202   94 SLFWVELSISPVRDEDGEITGFVG 117
 
Name Accession Description Interval E-value
PDEase_I pfam00233
3'5'-cyclic nucleotide phosphodiesterase;
376-623 5.55e-99

3'5'-cyclic nucleotide phosphodiesterase;


Pssm-ID: 459723  Cd Length: 238  Bit Score: 302.55  E-value: 5.55e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  376 YHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAF 455
Cdd:pfam00233   1 YHNWRHAFDVTQTMYYLLKTGKLKEVLTDLEILALLIAALCHDVDHPGTNNAFLIKTKSPLAILYNDSSVLENHHCATAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  456 QLtVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKplaaESEGSDCEcnptgkNFPENQILIK 535
Cdd:pfam00233  81 QI-LQDEECNIFSNLSDEEYKEVRKLIISLILATDMAKHFELLKKFKSLLES----KKTLDFLE------NEEDRRLLLL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  536 RMMIKCADVANPCRPLDLCIEWAGRISEEYFAQTDEEKRQGLPvVMPVFDRN-TCSIPKSQISFIDYFITDMFDAW-DAF 613
Cdd:pfam00233 150 SMLIKAADISNPTRPWEISKKWADLVAEEFFRQGDLEKELGLP-VSPLMDREkKTSLPKSQIGFIDFIVLPLFEALaKLF 228

                         250
                  ....*....|
gi 755546266  614 AHLPALMQHL 623
Cdd:pfam00233 229 PELQPLLDQL 238
PAS COG2202
PAS domain [Signal transduction mechanisms];
35-138 3.79e-17

PAS domain [Signal transduction mechanisms];


Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 81.61  E-value: 3.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLpKSDKNRADLLDTINTCIKKGKEWQGVYYARRKSG 114
Cdd:COG2202   15 ALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDL-LPPEDDDEFLELLRAALAGGGVWRGELRNRRKDG 93

                         90       100
                 ....*....|....*....|....
gi 755546266 115 DSIQQHVKITPVIGQGGKIRHFVS 138
Cdd:COG2202   94 SLFWVELSISPVRDEDGEITGFVG 117
PAS_9 pfam13426
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ...
 50-139 1.16e-11

PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 463873 [Multi-domain]  Cd Length: 93  Bit Score: 61.32  E-value: 1.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   50 DHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNRADLLDTINTcikKGKEWQGVYYARRKSGDSIQQHVKITPVIGQ 129
Cdd:pfam13426   1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAEPEDSERLREALRE---GKAVREFEVVLYRKDGEPFPVLVSLAPIRDD 77

                          90
                  ....*....|
gi 755546266  130 GGKIRHFVSL 139
Cdd:pfam13426  78 GGELVGIIAI 87
PAS cd00130
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 46-138 7.21e-10

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.


Pssm-ID: 238075 [Multi-domain]  Cd Length: 103  Bit Score: 56.49  E-value: 7.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  46 ITSDDHVIQYVNPAFERMMGYHKGELLGKELADL-PKSDknRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKIT 124
Cdd:cd00130    7 VLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLiHPED--REELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSLT 84

                         90
                 ....*....|....
gi 755546266 125 PVIGQGGKIRHFVS 138
Cdd:cd00130   85 PIRDEGGEVIGLLG 98
sensory_box TIGR00229
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ...
 35-138 1.79e-08

PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]


Pssm-ID: 272971 [Multi-domain]  Cd Length: 124  Bit Score: 53.06  E-value: 1.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDkNRADLLDTINTCIKKGKEWQGVYYA-RRKS 113
Cdd:TIGR00229   7 AIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEE-DREEVRERIERRLEGEPEPVSEERRvRRKD 85

                          90       100
                  ....*....|....*....|....*
gi 755546266  114 GDSIQQHVKITPVIGQGGkIRHFVS 138
Cdd:TIGR00229  86 GSEIWVEVSVSPIRTNGG-ELGVVG 109
HDc cd00077
Metal dependent phosphohydrolases with conserved 'HD' motif
 376-566 2.75e-06

Metal dependent phosphohydrolases with conserved 'HD' motif


Pssm-ID: 238032 [Multi-domain]  Cd Length: 145  Bit Score: 47.33  E-value: 2.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266 376 YHNSTHAADVLHATAFFLGKERvkgsLDQLDEVAALIAATVHDVDHPGRTNSFlcnagselavlYNDTAVLESHHTALAF 455
Cdd:cd00077    1 EHRFEHSLRVAQLARRLAEELG----LSEEDIELLRLAALLHDIGKPGTPDAI-----------TEEESELEKDHAIVGA 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266 456 QLtvkdtkcnifknIDRNHYRTLRQAIIDMVLATEMtKHFEHVNKFvnsinkplaaesegsdcecnPTGKNFPENQILIK 535
Cdd:cd00077   66 EI------------LRELLLEEVIKLIDELILAVDA-SHHERLDGL--------------------GYPDGLKGEEITLE 112

                        170       180       190
                 ....*....|....*....|....*....|...
gi 755546266 536 RMMIKCADV--ANPCRPLDLCIEWAGRISEEYF 566
Cdd:cd00077  113 ARIVKLADRldALRRDSREKRRRIAEEDLEELL 145
PAS smart00091
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 35-79 8.33e-06

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.


Pssm-ID: 214512  Cd Length: 67  Bit Score: 43.93  E-value: 8.33e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 755546266    35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADL 79
Cdd:smart00091   5 AILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLEL 49
PRK13558 PRK13558
bacterio-opsin activator; Provisional
 36-137 1.28e-04

bacterio-opsin activator; Provisional


Pssm-ID: 237426 [Multi-domain]  Cd Length: 665  Bit Score: 45.21  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  36 ALDHCHEAIEI---TSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNrADLLDTINTCIKKGKEWQGVYYARRK 112
Cdd:PRK13558 153 ALDEAPVGITIadaTLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTN-EERVAELREAIDEERPTSVELRNYRK 231

                         90       100
                 ....*....|....*....|....*
gi 755546266 113 SGDSIQQHVKITPVIGQGGKIRHFV 137
Cdd:PRK13558 232 DGSTFWNQVDIAPIRDEDGTVTHYV 256
HDc smart00471
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ...
 374-472 1.72e-04

Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).


Pssm-ID: 214679 [Multi-domain]  Cd Length: 124  Bit Score: 41.90  E-value: 1.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   374 NAYHNSTHAADVLHaTAFFLGKErvkgsLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELavlyndtavlesHHTAL 453
Cdd:smart00471   1 SDYHVFEHSLRVAQ-LAAALAEE-----LGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVLE------------DHHFI 62

                           90
                   ....*....|....*....
gi 755546266   454 AFQLTVKDTKCNIFKNIDR 472
Cdd:smart00471  63 GAEILLEEEEPRILEEILR 81
 
Name Accession Description Interval E-value
PDEase_I pfam00233
3'5'-cyclic nucleotide phosphodiesterase;
376-623 5.55e-99

3'5'-cyclic nucleotide phosphodiesterase;


Pssm-ID: 459723  Cd Length: 238  Bit Score: 302.55  E-value: 5.55e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  376 YHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAF 455
Cdd:pfam00233   1 YHNWRHAFDVTQTMYYLLKTGKLKEVLTDLEILALLIAALCHDVDHPGTNNAFLIKTKSPLAILYNDSSVLENHHCATAF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  456 QLtVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNSINKplaaESEGSDCEcnptgkNFPENQILIK 535
Cdd:pfam00233  81 QI-LQDEECNIFSNLSDEEYKEVRKLIISLILATDMAKHFELLKKFKSLLES----KKTLDFLE------NEEDRRLLLL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  536 RMMIKCADVANPCRPLDLCIEWAGRISEEYFAQTDEEKRQGLPvVMPVFDRN-TCSIPKSQISFIDYFITDMFDAW-DAF 613
Cdd:pfam00233 150 SMLIKAADISNPTRPWEISKKWADLVAEEFFRQGDLEKELGLP-VSPLMDREkKTSLPKSQIGFIDFIVLPLFEALaKLF 228

                         250
                  ....*....|
gi 755546266  614 AHLPALMQHL 623
Cdd:pfam00233 229 PELQPLLDQL 238
PAS COG2202
PAS domain [Signal transduction mechanisms];
35-138 3.79e-17

PAS domain [Signal transduction mechanisms];


Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 81.61  E-value: 3.79e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLpKSDKNRADLLDTINTCIKKGKEWQGVYYARRKSG 114
Cdd:COG2202   15 ALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDL-LPPEDDDEFLELLRAALAGGGVWRGELRNRRKDG 93

                         90       100
                 ....*....|....*....|....
gi 755546266 115 DSIQQHVKITPVIGQGGKIRHFVS 138
Cdd:COG2202   94 SLFWVELSISPVRDEDGEITGFVG 117
PAS_9 pfam13426
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ...
 50-139 1.16e-11

PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 463873 [Multi-domain]  Cd Length: 93  Bit Score: 61.32  E-value: 1.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   50 DHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNRADLLDTINTcikKGKEWQGVYYARRKSGDSIQQHVKITPVIGQ 129
Cdd:pfam13426   1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAEPEDSERLREALRE---GKAVREFEVVLYRKDGEPFPVLVSLAPIRDD 77

                          90
                  ....*....|
gi 755546266  130 GGKIRHFVSL 139
Cdd:pfam13426  78 GGELVGIIAI 87
NtrB COG3852
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
35-134 1.18e-10

Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];


Pssm-ID: 443061 [Multi-domain]  Cd Length: 361  Bit Score: 63.71  E-value: 1.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDknrADLLDTINTCIKKGKE-WQGVYYARRKS 113
Cdd:COG3852   11 AILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPED---SPLRELLERALAEGQPvTEREVTLRRKD 87

                         90       100
                 ....*....|....*....|.
gi 755546266 114 GDSIQQHVKITPVIGQGGKIR 134
Cdd:COG3852   88 GEERPVDVSVSPLRDAEGEGG 108
PAS cd00130
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 46-138 7.21e-10

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.


Pssm-ID: 238075 [Multi-domain]  Cd Length: 103  Bit Score: 56.49  E-value: 7.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  46 ITSDDHVIQYVNPAFERMMGYHKGELLGKELADL-PKSDknRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKIT 124
Cdd:cd00130    7 VLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLiHPED--REELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSLT 84

                         90
                 ....*....|....
gi 755546266 125 PVIGQGGKIRHFVS 138
Cdd:cd00130   85 PIRDEGGEVIGLLG 98
PAS pfam00989
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
 35-137 1.65e-09

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395786 [Multi-domain]  Cd Length: 113  Bit Score: 55.89  E-value: 1.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADL-PKSDknRADLLDTINTCIKKGKEWQGVYYARRKS 113
Cdd:pfam00989   5 AILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLiPEED--DAEVAELLRQALLQGEESRGFEVSFRVP 82

                          90       100
                  ....*....|....*....|....*
gi 755546266  114 -GDSIQQHVKITPVIGQGGKIRHFV 137
Cdd:pfam00989  83 dGRPRHVEVRASPVRDAGGEILGFL 107
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 35-170 1.48e-08

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 57.47  E-value: 1.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSdknradllDTINTCIKKGKEWQGVYYarRKSG 114
Cdd:COG3829   15 AILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIPN--------SPLLEVLKTGKPVTGVIQ--KTGG 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 755546266 115 DSIQQHVKITPVIGQGGKIRHFVSLKKLcctTDSNKQIHRIHRDSGDNSQTEPHSF 170
Cdd:COG3829   85 KGKTVIVTAIPIFEDGEVIGAVETFRDI---TELKRLERKLREEELERGLSAKYTF 137
sensory_box TIGR00229
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ...
 35-138 1.79e-08

PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]


Pssm-ID: 272971 [Multi-domain]  Cd Length: 124  Bit Score: 53.06  E-value: 1.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDkNRADLLDTINTCIKKGKEWQGVYYA-RRKS 113
Cdd:TIGR00229   7 AIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEE-DREEVRERIERRLEGEPEPVSEERRvRRKD 85

                          90       100
                  ....*....|....*....|....*
gi 755546266  114 GDSIQQHVKITPVIGQGGkIRHFVS 138
Cdd:TIGR00229  86 GSEIWVEVSVSPIRTNGG-ELGVVG 109
PAS_3 pfam08447
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
 55-138 1.26e-07

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.


Pssm-ID: 430001 [Multi-domain]  Cd Length: 89  Bit Score: 49.64  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   55 YVNPAFERMMGYHKGELLGK--ELADLPKSDkNRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKITPVIGQGGK 132
Cdd:pfam08447   3 YWSPRFEEILGYTPEELLGKgeSWLDLVHPD-DRERVREALWEALKGGEPYSGEYRIRRKDGEYRWVEARARPIRDENGK 81


                  ....*.
gi 755546266  133 IRHFVS 138
Cdd:pfam08447  82 PVRVIG 87
PAS COG2202
PAS domain [Signal transduction mechanisms];
22-139 3.86e-07

PAS domain [Signal transduction mechanisms];


Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 51.95  E-value: 3.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  22 RSQFKLRAcnsvftALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPkSDKNRADLLDTINTCIKKGK 101
Cdd:COG2202  134 ESEERLRL------LVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLL-HPEDRERLLELLRRLLEGGR 206

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 755546266 102 EWQGVYYaRRKSGDSIQQHVKITPV-IGQGGKIRHFVSL 139
Cdd:COG2202  207 ESYELEL-RLKDGDGRWVWVEASAVpLRDGGEVIGVLGI 244
HDc cd00077
Metal dependent phosphohydrolases with conserved 'HD' motif
 376-566 2.75e-06

Metal dependent phosphohydrolases with conserved 'HD' motif


Pssm-ID: 238032 [Multi-domain]  Cd Length: 145  Bit Score: 47.33  E-value: 2.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266 376 YHNSTHAADVLHATAFFLGKERvkgsLDQLDEVAALIAATVHDVDHPGRTNSFlcnagselavlYNDTAVLESHHTALAF 455
Cdd:cd00077    1 EHRFEHSLRVAQLARRLAEELG----LSEEDIELLRLAALLHDIGKPGTPDAI-----------TEEESELEKDHAIVGA 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266 456 QLtvkdtkcnifknIDRNHYRTLRQAIIDMVLATEMtKHFEHVNKFvnsinkplaaesegsdcecnPTGKNFPENQILIK 535
Cdd:cd00077   66 EI------------LRELLLEEVIKLIDELILAVDA-SHHERLDGL--------------------GYPDGLKGEEITLE 112

                        170       180       190
                 ....*....|....*....|....*....|...
gi 755546266 536 RMMIKCADV--ANPCRPLDLCIEWAGRISEEYF 566
Cdd:cd00077  113 ARIVKLADRldALRRDSREKRRRIAEEDLEELL 145
PAS smart00091
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
 35-79 8.33e-06

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.


Pssm-ID: 214512  Cd Length: 67  Bit Score: 43.93  E-value: 8.33e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 755546266    35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADL 79
Cdd:smart00091   5 AILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLEL 49
PRK13558 PRK13558
bacterio-opsin activator; Provisional
 36-137 1.28e-04

bacterio-opsin activator; Provisional


Pssm-ID: 237426 [Multi-domain]  Cd Length: 665  Bit Score: 45.21  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  36 ALDHCHEAIEI---TSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNrADLLDTINTCIKKGKEWQGVYYARRK 112
Cdd:PRK13558 153 ALDEAPVGITIadaTLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTN-EERVAELREAIDEERPTSVELRNYRK 231

                         90       100
                 ....*....|....*....|....*
gi 755546266 113 SGDSIQQHVKITPVIGQGGKIRHFV 137
Cdd:PRK13558 232 DGSTFWNQVDIAPIRDEDGTVTHYV 256
HDc smart00471
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ...
 374-472 1.72e-04

Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).


Pssm-ID: 214679 [Multi-domain]  Cd Length: 124  Bit Score: 41.90  E-value: 1.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   374 NAYHNSTHAADVLHaTAFFLGKErvkgsLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGSELavlyndtavlesHHTAL 453
Cdd:smart00471   1 SDYHVFEHSLRVAQ-LAAALAEE-----LGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVLE------------DHHFI 62

                           90
                   ....*....|....*....
gi 755546266   454 AFQLTVKDTKCNIFKNIDR 472
Cdd:smart00471  63 GAEILLEEEEPRILEEILR 81
KinA COG5805
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ...
 3-141 3.28e-04

Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444507 [Multi-domain]  Cd Length: 496  Bit Score: 43.57  E-value: 3.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266   3 NSSIIACYNELIQIEHGEvRSQFKLRACNSVFTALD-HCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLpK 81
Cdd:COG5805  129 NQNGQAAILALRDITKKK-KIEEILQEQEERLQTLIeNSPDLICVIDTDGRILFINESIERLFGAPREELIGKNLLEL-L 206

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  82 SDKNRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKITPVIGQGGKIRHFVSLKK 141
Cdd:COG5805  207 HPCDKEEFKERIESITEVWQEFIIEREIITKDGRIRYFEAVIVPLIDTDGSVKGILVILR 266
PAS_8 pfam13188
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ...
 35-94 8.21e-04

PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 463802 [Multi-domain]  Cd Length: 65  Bit Score: 38.30  E-value: 8.21e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755546266   35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGY-HKGELLGKELADLPKSDKNRADLLDTIN 94
Cdd:pfam13188   5 ALFESSPDGILVLDEGGRIIYVNPAALELLGYeLLGELLGELLDLLDPLLEDALELLRELR 65
KinE COG5809
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ...
 37-133 1.50e-03

Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444511 [Multi-domain]  Cd Length: 489  Bit Score: 41.50  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  37 LDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNRadLLDTINTCIKKGKEWQGVYYARR-KSGD 115
Cdd:COG5809   21 FENAPDAILILDLEGKILKVNPAAERIFGYTEDELLGTNILDFLHPDDEK--ELREILKLLKEGESRDELEFELRhKNGK 98

                         90
                 ....*....|....*...
gi 755546266 116 SIQQHVKITPVIGQGGKI 133
Cdd:COG5809   99 RLEFSSKLSPIFDQNGDI 116
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 35-130 4.14e-03

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 39.95  E-value: 4.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755546266  35 TALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADLPKSDKNRADLLDTINtcikkgKEWQGVYyaRRKSG 114
Cdd:COG5000   94 TILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLPELDLAELLREALE------RGWQEEI--ELTRD 165

                         90
                 ....*....|....*.
gi 755546266 115 DSIQQHVKITPVIGQG 130
Cdd:COG5000  166 GRRTLLVRASPLRDDG 181
PAS_4 pfam08448
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
 37-79 7.11e-03

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 312075 [Multi-domain]  Cd Length: 110  Bit Score: 36.62  E-value: 7.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 755546266   37 LDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELADL 79
Cdd:pfam08448   1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAEL 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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