NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|755495601|ref|XP_011237090|]
View 

protein PRRC2C isoform X10 [Mus musculus]

Protein Classification

PRCC domain-containing protein( domain architecture ID 10537006)

proline-rich coiled-coil (PRCC) domain-containing protein such as human proline-rich coiled-coil 2A protein (PRRC2A) that may play a role in the regulation of pre-mRNA splicing

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-160 7.04e-48

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


:

Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 170.44  E-value: 7.04e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601     2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTTA----RHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 76
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKNvvprKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601    77 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSW--ASNKQGGQGDGI- 133
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWaqASTTAGSQGGGGk 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 755495601   134 ---QVNSQFQQEFPSLQAAGDQEKKEKEAN 160
Cdd:pfam07001  159 gsnQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1705-1977 4.39e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1705 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1774
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1775 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1852
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1853 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1929
Cdd:PHA03247 2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 755495601 1930 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1977
Cdd:PHA03247 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-160 7.04e-48

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 170.44  E-value: 7.04e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601     2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTTA----RHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 76
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKNvvprKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601    77 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSW--ASNKQGGQGDGI- 133
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWaqASTTAGSQGGGGk 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 755495601   134 ---QVNSQFQQEFPSLQAAGDQEKKEKEAN 160
Cdd:pfam07001  159 gsnQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1705-1977 4.39e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1705 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1774
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1775 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1852
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1853 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1929
Cdd:PHA03247 2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 755495601 1930 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1977
Cdd:PHA03247 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
1747-1878 1.40e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 50.52  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1747 ASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVlASASTTVSVPILTSASIPILASA- 1825
Cdd:COG3469    69 TAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVT-STTSSTAGSTTTSGASATSSAGSt 147

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755495601 1826 ---------LAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASA---ASTVPPPASTV 1878
Cdd:COG3469   148 tttttvsgtETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSAtttATTTGPPTPGL 212
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1755-1877 3.47e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.45  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601  1755 VSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSP 1834
Cdd:pfam05109  473 VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTP 551

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 755495601  1835 TPVVSAtavpsiSTPAVPASAPTASVP----LAPASAASTVPPPAST 1877
Cdd:pfam05109  552 TPNATS------PTPAVTTPTPNATIPtlgkTSPTSAVTTPTPNATS 592
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-160 7.04e-48

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 170.44  E-value: 7.04e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601     2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTTA----RHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 76
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKNvvprKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601    77 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSW--ASNKQGGQGDGI- 133
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWaqASTTAGSQGGGGk 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 755495601   134 ---QVNSQFQQEFPSLQAAGDQEKKEKEAN 160
Cdd:pfam07001  159 gsnQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1705-1977 4.39e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1705 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1774
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1775 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1852
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1853 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1929
Cdd:PHA03247 2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 755495601 1930 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1977
Cdd:PHA03247 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1751-1982 4.78e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.65  E-value: 4.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1751 ALVPVSTPAPVLTSCPAPVPTSASAPVPASTSspvtassssqPSVPAPTPVLASASTTVSvPILTSASIPILASALAPAT 1830
Cdd:PRK12323  378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA----------PAAAAAARAVAAAPARRS-PAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1831 VSSPTPvvSATAVPsistpaVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPpsapsskqPPPSIRL 1910
Cdd:PRK12323  447 APAPAP--APAAAP------AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP--------PEFASPA 510

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755495601 1911 PSAQTSNGTDFVAAGKSMPTSQSHGSLTAELWDSKVAAPAVLNDISkkLGPISPPQPPSVSAWNKPLTSFGS 1982
Cdd:PRK12323  511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA--TEPVVAPRPPRASASGLPDMFDGD 580
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1713-1877 7.21e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.86  E-value: 7.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1713 APPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQ 1792
Cdd:PRK07003  367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1793 PSVPAPTPVLASASTTVSVPILTSASIPILASALAPAT-------VSSPTPVVSATAVPSISTPAVPASAPTASVPLAPA 1865
Cdd:PRK07003  447 APVPAKANARASADSRCDERDAQPPADSGSASAPASDAppdaafePAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526

                         170
                  ....*....|..
gi 755495601 1866 SAASTVPPPAST 1877
Cdd:PRK07003  527 PPAPEARPPTPA 538
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1714-1931 2.36e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1714 PPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPV-----PTSASAPV-----PASTSS 1783
Cdd:PHA03247 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRArrlgrAAQASSPPqrprrRAARPT 2691

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1784 PVTASSSSQPSVPAPTPVLASASTTVSVPILTSasiPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLA 1863
Cdd:PHA03247 2692 VGSLTSLADPPPPPPTPEPAPHALVSATPLPPG---PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1864 PASAA--STVPPPASTVQTQTQTQTHKPvqsplPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGKSMPTS 1931
Cdd:PHA03247 2769 PAPPAapAAGPPRRLTRPAVASLSESRE-----SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1747-1874 9.05e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 9.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1747 ASATALVPVSTPAPVltscPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTtvsVPILTSASIPilaSAL 1826
Cdd:PRK14951  376 AEKKTPARPEAAAPA----AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA---APAAAPAAAP---AAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 755495601 1827 APATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPP 1874
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
1747-1878 1.40e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 50.52  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1747 ASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVlASASTTVSVPILTSASIPILASA- 1825
Cdd:COG3469    69 TAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVT-STTSSTAGSTTTSGASATSSAGSt 147

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755495601 1826 ---------LAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASA---ASTVPPPASTV 1878
Cdd:COG3469   148 tttttvsgtETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSAtttATTTGPPTPGL 212
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1816-1946 3.03e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 3.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1816 SASIPILASALAPATVSSPTPvvSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLP 1895
Cdd:PRK14951  369 AAEAAAPAEKKTPARPEAAAP--AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 755495601 1896 PSAPSSKQPPPSIRLPSAQTSNGTDF-VAAGKSMPTSQSHGSLTAEL---WDSKV 1946
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVaSAAPAPAAAPAAARLTPTEEgdvWHATV 501
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1793-1907 3.47e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.33  E-value: 3.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1793 PSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPL-APASAASTV 1871
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAaAPAAAPAAV 445

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 755495601 1872 PPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPS 1907
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1697-1873 1.33e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1697 PPRFAKKQATGTQQIQAPPSAPVPVS-----SSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPT 1771
Cdd:PRK12323  396 APAPAAPPAAPAAAPAAAAAARAVAAaparrSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1772 SASAPVPASTSSPVTASSSSQP-------SVPAPTPVLASASTTVSVpiltSASIPILASALAPATVSSPTPVVSATAVP 1844
Cdd:PRK12323  476 AAAAPARAAPAAAPAPADDDPPpweelppEFASPAPAQPDAAPAGWV----AESIPDPATADPDDAFETLAPAPAAAPAP 551

                         170       180
                  ....*....|....*....|....*....
gi 755495601 1845 SISTPAVPASAPTasvplAPASAASTVPP 1873
Cdd:PRK12323  552 RAAAATEPVVAPR-----PPRASASGLPD 575
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1792-1913 1.60e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1792 QPSVPAPTPVLASASTTVSVPILTSASIPilASALAPATVSSPtPVVSATAVPSISTPAVPASAPTASVPLAPASAASTV 1871
Cdd:PRK14951  373 AAPAEKKTPARPEAAAPAAAPVAQAAAAP--APAAAPAAAASA-PAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 755495601 1872 PPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSA 1913
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1767-2052 2.78e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 2.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1767 APVPTSASAPVPAStsspvtassssQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSI 1846
Cdd:PRK07003  359 EPAVTGGGAPGGGV-----------PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP 427

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1847 STPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGK 1926
Cdd:PRK07003  428 AAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1927 SMPTSQSHGSLTAELWDSKVAAPAVlndiskklgpiSPPQPPSVSAwnkPLTSFGSATSSEGTRNgqeSGVEIGIDTIQF 2006
Cdd:PRK07003  508 PDARAPAAASREDAPAAAAPPAPEA-----------RPPTPAAAAP---AARAGGAAAALDVLRN---AGMRVSSDRGAR 570

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 755495601 2007 GAPASNgnenevvPVLSEKATDKVPEPKEQRQ-KQPRAGPIKAQKLP 2052
Cdd:PRK07003  571 AAAAAK-------PAAAPAAAPKPAAPRVAVQvPTPRARAATGDAPP 610
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1755-1877 3.47e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.45  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601  1755 VSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSP 1834
Cdd:pfam05109  473 VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTP 551

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 755495601  1835 TPVVSAtavpsiSTPAVPASAPTASVP----LAPASAASTVPPPAST 1877
Cdd:pfam05109  552 TPNATS------PTPAVTTPTPNATIPtlgkTSPTSAVTTPTPNATS 592
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 1715-1875 5.42e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.63  E-value: 5.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1715 PSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVP-VSTPAPVltscPAPVPTSASAPVPASTSSPVTASSSSQP 1793
Cdd:PRK07994  361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPpPPASAPQ----QAPAVPLPETTSQLLAARQQLQRAQGAT 436

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1794 SVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPsiSTPAVPASAPTAsvpLAPASAASTVPP 1873
Cdd:PRK07994  437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV--EVKKEPVATPKA---LKKALEHEKTPE 511


                  ..
gi 755495601 1874 PA 1875
Cdd:PRK07994  512 LA 513
PPE COG5651
PPE-repeat protein [Function unknown];
1747-1985 8.66e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.50  E-value: 8.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1747 ASATALVPVSTPAPVLTScPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSvpiLTSASIPILASAL 1826
Cdd:COG5651   159 AAAVALTPFTQPPPTITN-PGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIG---LNSGPGNTGFAGT 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1827 APATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1906
Cdd:COG5651   235 GAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGG 314

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755495601 1907 SIRLPSAQTSNGTDFVAAGKSMPTSQSHGSLTaelwdskvAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATS 1985
Cdd:COG5651   315 AAGAAGATGAGAALGAGAAAAAAGAAAGAGAA--------AAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1697-1988 9.47e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 9.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1697 PPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPA-PVPTSASA 1775
Cdd:PHA03307   54 TVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAsPPPSPAPD 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1776 PVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSvpiltsasiPILASALAPATVSSPTPVVSATAVPSISTPAvPASA 1855
Cdd:PHA03307  134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS---------SRQAALPLSSPEETARAPSSPPAEPPPSTPP-AAAS 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1856 PTASVPLAPASAASTVPPPAST----VQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGKSmPTS 1931
Cdd:PHA03307  204 PRPPRRSSPISASASSPAPAPGrsaaDDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPS-SRP 282

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 755495601 1932 QSHGSLTAELWDSKVAAPavlndiSKKLGPISPPQPPSVSAWNKPLTSFGSATSSEG 1988
Cdd:PHA03307  283 GPASSSSSPRERSPSPSP------SSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
PRK10856 PRK10856
cytoskeleton protein RodZ;
1792-1877 1.01e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.86  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1792 QPSVPAPTPVLASASTTVSVPILTSAsipilASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLaPASAASTV 1871
Cdd:PRK10856  172 PATTPAPAAPVDTTPTNSQTPAVATA-----PAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPL-PTDQAGVS 245


                  ....*.
gi 755495601 1872 PPPAST 1877
Cdd:PRK10856  246 TPAADP 251
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1697-1906 1.12e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1697 PPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPI--LASATALVPVSTPAPVLTSCPAPVPTSAS 1774
Cdd:PRK07003  405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKAnaRASADSRCDERDAQPPADSGSASAPASDA 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1775 APVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASAlAPATVSSPTPVVSATAVPSI-------- 1846
Cdd:PRK07003  485 PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP-TPAAAAPAARAGGAAAALDVlrnagmrv 563

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755495601 1847 ----STPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1906
Cdd:PRK07003  564 ssdrGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1758-2148 1.63e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1758 PAPVLTSCPAPVPTSASAPVPASTSSpvtassssqPSVPAPTPVLASASTTVSVPILTSA-SIPILASA--------LAP 1828
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPP---------TVPPPERPRDDPAPGRVSRPRRARRlGRAAQASSppqrprrrAAR 2689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1829 ATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVP-PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPP-P 1906
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPaLPAAPAPPAVPAGPATPGGPARPARPPTTAGPPaP 2769

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1907 SIRLPSAQTSNGTDFVAAGKSMPTSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSS 1986
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1987 EGTrngqESGVEIGIDTIQFGAPASNGnenEVVPVLSEKATDKVPEPKEQRQKQPRAGPIKAQKLPdlslvenkeHKPGP 2066
Cdd:PHA03247 2850 LPL----GGSVAPGGDVRRRPPSRSPA---AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP---------PQPQA 2913

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 2067 IGKERSLKNRKVKDAQQVEPEGQEKPSPAVVRSTDPETAKETKAVSEmSAEIGAMISVSSAEYGSDAKESVTDYTTPSSS 2146
Cdd:PHA03247 2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP-QPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992


                  ..
gi 755495601 2147 LP 2148
Cdd:PHA03247 2993 TP 2994
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1697-1875 2.60e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 2.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1697 PPRFAkkqATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAP 1776
Cdd:PRK12323  374 PATAA---AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1777 VPASTSSPVTASSSSQPSvPAPTPVLASASTTVSVPILTSASIPILASAL--APATVSSPTPVVSATAVPSISTPAVP-- 1852
Cdd:PRK12323  451 APAPAAAPAAAARPAAAG-PRPVAAAAAAAPARAAPAAAPAPADDDPPPWeeLPPEFASPAPAQPDAAPAGWVAESIPdp 529

                         170       180
                  ....*....|....*....|....*
gi 755495601 1853 --ASAPTASVPLAPASAASTVPPPA 1875
Cdd:PRK12323  530 atADPDDAFETLAPAPAAAPAPRAA 554
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 1754-1875 3.55e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 3.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1754 PVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSvPAPTPVLASASTTVSVPILTSASIPILASALAPATvss 1833
Cdd:PRK07764  390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ-PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ--- 465

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 755495601 1834 PTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPA 1875
Cdd:PRK07764  466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
rne PRK10811
ribonuclease E; Reviewed
 1754-1983 3.94e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.72  E-value: 3.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1754 PVSTPAPVLTSCPAPVPTSASAPVPASTSSpvtassssqPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSS 1833
Cdd:PRK10811  862 EEVQVQPVVAEVPVAAAVEPVVSAPVVEAV---------AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVIT 932

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1834 PTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTqtqtqthkPVQSPLPPSAPSSKQPPPSIRLPSA 1913
Cdd:PRK10811  933 ESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP--------AAPVVAEVAAEVETVTAVEPEVAPA 1004

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755495601 1914 QTSNGTDFvaagksmptsqsHGSLTAELwdskVAAPAvlndiskklgPISPPQPPSVSAWNKPLTSF---GSA 1983
Cdd:PRK10811 1005 QVPEATVE------------HNHATAPM----TRAPA----------PEYVPEAPRHSDWQRPTFAFegkGAA 1051
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 1746-1874 4.00e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.41  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1746 LASATALVPVSTP-----APVLTSCPAPVPTSAS--APVPAsTSSPVTASSSSQPSVpAPTPVLASASTTVSVPILTSAS 1818
Cdd:PHA03269   17 LIIANLNTNIPIPelhtsAATQKPDPAPAPHQAAsrAPDPA-VAPTSAASRKPDLAQ-APTPAASEKFDPAPAPHQAASR 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 755495601 1819 IPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPP 1874
Cdd:PHA03269   95 APDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1766-1917 4.73e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 4.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1766 PAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSPTPVVSATAVPS 1845
Cdd:PRK07003  373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA-TRAEAPPAAPAPPATADRGDDAADGDAPVPA 451

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755495601 1846 ISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTqthKPVQSPLPPSAPSSKQPPPSIRLPSAQTSN 1917
Cdd:PRK07003  452 KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAF---EPAPRAAAPSAATPAAVPDARAPAAASRED 520
rne PRK10811
ribonuclease E; Reviewed
 1703-1877 5.57e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.33  E-value: 5.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1703 KQATGTQQIQAPPSAPVPVSSSAPGLTAPAAaapaSTPAPVPILASATALVPVSTPAPVLTSCP---APVPTSASAPVPA 1779
Cdd:PRK10811  851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEP----VVSAPVVEAVAEVVEEPVVVAEPQPEEVVvveTTHPEVIAAPVTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1780 STSS-PVTASSSSQPSVPAPTPVLASASTTVSVPILTS------ASIPILASALAPATVSSPTPVVSATAVPSISTPAVP 1852
Cdd:PRK10811  927 QPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAEtaevvvAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006

                         170       180       190
                  ....*....|....*....|....*....|.
gi 755495601 1853 ASAPT----ASVPL--APASAASTVPPPAST 1877
Cdd:PRK10811 1007 PEATVehnhATAPMtrAPAPEYVPEAPRHSD 1037
PPE COG5651
PPE-repeat protein [Function unknown];
1713-1877 5.89e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 41.80  E-value: 5.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1713 APPSAPVPVS-SSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSS 1791
Cdd:COG5651   165 TPFTQPPPTItNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAAA 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1792 QPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTV 1871
Cdd:COG5651   245 AAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGA 324


                  ....*.
gi 755495601 1872 PPPAST 1877
Cdd:COG5651   325 GAALGA 330
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1702-1840 6.47e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 6.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1702 KKQATGTQQIQAPPSAPVPVSssapgltapaaaapASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPV--PA 1779
Cdd:PRK14951  365 KPAAAAEAAAPAEKKTPARPE--------------AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVaaPA 430

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755495601 1780 STSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSA 1840
Cdd:PRK14951  431 AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PHA03255 PHA03255
BDLF3; Provisional
 1771-1942 6.50e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.04  E-value: 6.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1771 TSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSAsipiLASALAPATVSSPTPVVSATAVPSISTPA 1850
Cdd:PHA03255   26 SSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTA----ILSTNTTTVTSTGTTVTPVPTTSNASTIN 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1851 VPASApTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPsskqPPPSirlpSAQTSNGTDFVAAGKSMPT 1930
Cdd:PHA03255  102 VTTKV-TAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLA----PTLS----SKGTSNATKTTAELPTVPD 172

                         170
                  ....*....|...
gi 755495601 1931 SQSHGSLTA-ELW 1942
Cdd:PHA03255  173 ERQPSLSYGlPLW 185
rne PRK10811
ribonuclease E; Reviewed
 1751-1906 6.53e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.95  E-value: 6.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1751 ALVPVSTPAPVLTSCPAPVPTSASAPVPASTsspvtassssqPSVPAPTPVLASASTTVSVPILTSASIPILASALAPAT 1830
Cdd:PRK10811  861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-----------AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755495601 1831 VSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1906
Cdd:PRK10811  930 VITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005
motB PRK12799
flagellar motor protein MotB; Reviewed
 1794-1919 9.86e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 41.24  E-value: 9.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755495601 1794 SVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPP 1873
Cdd:PRK12799  298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQ 377

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 755495601 1874 PASTVQTQtqtqthkpvQSPLPPSAPSSKQPPPSirLPSAQTSNGT 1919
Cdd:PRK12799  378 PMSTTETQ---------QSSTGNITSTANGPTTS--LPAAPASNIP 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH