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Conserved domains on  [gi|704311997|ref|XP_010166261|]
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toll-like receptor 2 type-1, partial [Antrostomus carolinensis]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 12156038)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
88-145 6.47e-12

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 60.23  E-value: 6.47e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 704311997   88 NLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHLFSLQHLHLQGN 145
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR super family cl34836
Leucine-rich repeat (LRR) protein [Transcription];
64-226 2.59e-10

Leucine-rich repeat (LRR) protein [Transcription];


The actual alignment was detected with superfamily member COG4886:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.87  E-value: 2.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  64 KITVLNLAYNRIKAIrSQDLQQAVNLRALLLQSNEISSIDEnSFHSLGKLELLDLSNNSLAHLSpvWFGHLFSLQHLHLQ 143
Cdd:COG4886  183 NLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLS 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 144 GNTYRDLgesSPFSNLRNLSSLHLGNPQFSTIRQGNFEGIGVLDKLwIDGGNLSQYEPGSLKPIKKINHMILNLKNSNTF 223
Cdd:COG4886  259 NNQLTDL---PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL-LLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334


                 ...
gi 704311997 224 SAI 226
Cdd:COG4886  335 VTL 337
LRR super family cl34836
Leucine-rich repeat (LRR) protein [Transcription];
342-434 8.20e-03

Leucine-rich repeat (LRR) protein [Transcription];


The actual alignment was detected with superfamily member COG4886:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 38.38  E-value: 8.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 342 SQIKNLKRLTIASSRVFMVPCNLARhFSSLLYLDFNDNLLVNirLDETICEdaWPSLQTLNLSQNSLQSLkktANSVTRL 421
Cdd:COG4886  156 GNLTNLKSLDLSNNQLTDLPEELGN-LTNLKELDLSNNQITD--LPEPLGN--LTNLEELDLSGNQLTDL---PEPLANL 227

                         90
                 ....*....|...
gi 704311997 422 PKLINLDISQNNF 434
Cdd:COG4886  228 TNLETLDLSNNQL 240
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
88-145 6.47e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 60.23  E-value: 6.47e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 704311997   88 NLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHLFSLQHLHLQGN 145
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-226 2.59e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.87  E-value: 2.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  64 KITVLNLAYNRIKAIrSQDLQQAVNLRALLLQSNEISSIDEnSFHSLGKLELLDLSNNSLAHLSpvWFGHLFSLQHLHLQ 143
Cdd:COG4886  183 NLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLS 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 144 GNTYRDLgesSPFSNLRNLSSLHLGNPQFSTIRQGNFEGIGVLDKLwIDGGNLSQYEPGSLKPIKKINHMILNLKNSNTF 223
Cdd:COG4886  259 NNQLTDL---PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL-LLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334


                 ...
gi 704311997 224 SAI 226
Cdd:COG4886  335 VTL 337
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 64-143 6.32e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.09  E-value: 6.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  64 KITVLNLAYNRIKAIrsQDLQQAVNLRALLLQSNEISSIDenSFHSLGKLELLDLSNNSLAHLSPvwFGHLFSLQHLHLQ 143
Cdd:cd21340   25 NLKVLYLYDNKITKI--ENLEFLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIE 98
PLN03150 PLN03150
hypothetical protein; Provisional
 65-145 2.77e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.27  E-value: 2.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  65 ITVLNLAYNRIKAIRSQDLQQAVNLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHLFSLQHLHLQG 144
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499


                 .
gi 704311997 145 N 145
Cdd:PLN03150 500 N 500
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 57-173 2.57e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.22  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  57 IPPGLTG--KITVLNLAYNRIKAIRSQDLQQAVNLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHL 134
Cdd:PLN00113 180 IPNSLTNltSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 704311997 135 FSLQHLHLQGNTYRDLGESSPFsNLRNLSSLHLGNPQFS 173
Cdd:PLN00113 260 KNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS 297
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
342-434 8.20e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 38.38  E-value: 8.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 342 SQIKNLKRLTIASSRVFMVPCNLARhFSSLLYLDFNDNLLVNirLDETICEdaWPSLQTLNLSQNSLQSLkktANSVTRL 421
Cdd:COG4886  156 GNLTNLKSLDLSNNQLTDLPEELGN-LTNLKELDLSNNQITD--LPEPLGN--LTNLEELDLSGNQLTDL---PEPLANL 227

                         90
                 ....*....|...
gi 704311997 422 PKLINLDISQNNF 434
Cdd:COG4886  228 TNLETLDLSNNQL 240
 
Name Accession Description Interval E-value
LRR_8 pfam13855
Leucine rich repeat;
88-145 6.47e-12

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 60.23  E-value: 6.47e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 704311997   88 NLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHLFSLQHLHLQGN 145
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-226 2.59e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.87  E-value: 2.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  64 KITVLNLAYNRIKAIrSQDLQQAVNLRALLLQSNEISSIDEnSFHSLGKLELLDLSNNSLAHLSpvWFGHLFSLQHLHLQ 143
Cdd:COG4886  183 NLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLP--ELGNLTNLEELDLS 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 144 GNTYRDLgesSPFSNLRNLSSLHLGNPQFSTIRQGNFEGIGVLDKLwIDGGNLSQYEPGSLKPIKKINHMILNLKNSNTF 223
Cdd:COG4886  259 NNQLTDL---PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL-LLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334


                 ...
gi 704311997 224 SAI 226
Cdd:COG4886  335 VTL 337
LRR_8 pfam13855
Leucine rich repeat;
64-123 2.35e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.52  E-value: 2.35e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997   64 KITVLNLAYNRIKAIRSQDLQQAVNLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSL 123
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 64-143 6.32e-06

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 47.09  E-value: 6.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  64 KITVLNLAYNRIKAIrsQDLQQAVNLRALLLQSNEISSIDenSFHSLGKLELLDLSNNSLAHLSPvwFGHLFSLQHLHLQ 143
Cdd:cd21340   25 NLKVLYLYDNKITKI--ENLEFLTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIE 98
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 63-175 2.90e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 45.16  E-value: 2.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  63 GKITVLNLAYNRIKAIrsQDLQQAVNLRALLLQSNEISSIDensfhslgklellDLSNNSlahlspvwfghlfSLQHLHL 142
Cdd:cd21340    2 KRITHLYLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIE-------------NLEFLT-------------NLTHLYL 53

                         90       100       110
                 ....*....|....*....|....*....|...
gi 704311997 143 QGNtyrDLGESSPFSNLRNLSSLHLGNPQFSTI 175
Cdd:cd21340   54 QNN---QIEKIENLENLVNLKKLYLGGNRISVV 83
PLN03150 PLN03150
hypothetical protein; Provisional
 65-145 2.77e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.27  E-value: 2.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  65 ITVLNLAYNRIKAIRSQDLQQAVNLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHLFSLQHLHLQG 144
Cdd:PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499


                 .
gi 704311997 145 N 145
Cdd:PLN03150 500 N 500
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
48-254 1.31e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 40.69  E-value: 1.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  48 NCSSMGLDFIPPGLTG--KITVLNLAYNRIKAIRSqdLQQAVNLRALLLQSNEISSIDENSfhSLGKLELLDLSNNSLAH 125
Cdd:COG4886  211 DLSGNQLTDLPEPLANltNLETLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQLTD 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 126 LSpvwFGHLFSLQHLHLQGNTYRDLGESSPFSNLRNLSSLHLGNPQFSTIRQGNFEGIGVLDKLWIDGGNLSQYEPGSLK 205
Cdd:COG4886  287 LK---LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLL 363

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 704311997 206 PIKKINHMILNLKNSNTFSAIVRDILHSVIWLEVREIKLEIEKKSLVQN 254
Cdd:COG4886  364 TLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVN 412
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 57-173 2.57e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.22  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  57 IPPGLTG--KITVLNLAYNRIKAIRSQDLQQAVNLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHL 134
Cdd:PLN00113 180 IPNSLTNltSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 704311997 135 FSLQHLHLQGNTYRDLGESSPFsNLRNLSSLHLGNPQFS 173
Cdd:PLN00113 260 KNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS 297
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 66-127 3.06e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.00  E-value: 3.06e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 704311997  66 TVLNLAYNRIKAIrsQDLQQAVNLRALLLQSNEISSIDE--NSFHSLGKLELLDLSNNSLAHLS 127
Cdd:cd21340  123 RVLNISGNNIDSL--EPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCKKP 184
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 86-145 5.34e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 38.23  E-value: 5.34e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 704311997  86 AVNLRALLLQSNEISSIDEnsFHSLGKLELLDLSNNSLAHLSPV--WFGHLFSLQHLHLQGN 145
Cdd:cd21340  119 SNSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEELldLLSSWPSLRELDLTGN 178
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 59-147 7.40e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.68  E-value: 7.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997  59 PGLTGKITVLN---LAYNRIKAIRSQDLQQAVNLRALLLQSNEISSIDENSFHSLGKLELLDLSNNSLAHLSPVWFGHLF 135
Cdd:PLN00113 229 PYEIGGLTSLNhldLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

                         90
                 ....*....|..
gi 704311997 136 SLQHLHLQGNTY 147
Cdd:PLN00113 309 NLEILHLFSNNF 320
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
342-434 8.20e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 38.38  E-value: 8.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704311997 342 SQIKNLKRLTIASSRVFMVPCNLARhFSSLLYLDFNDNLLVNirLDETICEdaWPSLQTLNLSQNSLQSLkktANSVTRL 421
Cdd:COG4886  156 GNLTNLKSLDLSNNQLTDLPEELGN-LTNLKELDLSNNQITD--LPEPLGN--LTNLEELDLSGNQLTDL---PEPLANL 227

                         90
                 ....*....|...
gi 704311997 422 PKLINLDISQNNF 434
Cdd:COG4886  228 TNLETLDLSNNQL 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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