|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
258-331 |
6.45e-39 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 138.82 E-value: 6.45e-39
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 705689304 258 QSQLPVFTRFDNPAAVSPSP-TRQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLVESLLDVRNVATLTFFCFLG 331
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLlTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
439-698 |
1.84e-34 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 132.44 E-value: 1.84e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 439 LKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgkK 518
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADY--------------E 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 519 YAARVAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNAD 598
Cdd:COG0457 67 QALELDPDDAEALNNLGL-ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 599 LWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQLRPEAKQRLLNYVKEEPQDANGYFNLGMLA 678
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225
|
250 260
....*....|....*....|
gi 705689304 679 MDDKKDVEAEAWMKKAIRLQ 698
Cdd:COG0457 226 ALALLLALRLAALALYQYRA 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
449-730 |
7.60e-34 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 131.39 E-value: 7.60e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 449 WNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgKKYAARvAPNHL 528
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIH-------------QKLLER-DPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 529 NVYINLANL-IRANesRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVY 607
Cdd:COG2956 77 EALLELAQDyLKAG--LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 608 IELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEA 687
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 705689304 688 EAWMKKAIRLQPNfRSALFNLALLYSQTAKELMALPVLEDLLR 730
Cdd:COG2956 232 LELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
474-732 |
3.34e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 128.59 E-value: 3.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 474 QVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgkKYAARVAPNHLNVYINLANlIRANESRLEEADQLYR 553
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDY--------------EKALELDPDDAEALYNLGL-AYLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 554 QAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLA 633
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 634 LFNSALLMQESGDAQLRPEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYS 713
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
|
250
....*....|....*....
gi 705689304 714 QTAKELMALPVLEDLLRYY 732
Cdd:COG0457 227 LALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
556-735 |
6.30e-33 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 127.82 E-value: 6.30e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 556 ISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALF 635
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 636 NSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQT 715
Cdd:COG0457 81 NLGLALQALGRYE---EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180
....*....|....*....|
gi 705689304 716 AKELMALPVLEDLLRYYPDH 735
Cdd:COG0457 158 GRYEEALELLEKLEAAALAA 177
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
434-698 |
3.35e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 126.77 E-value: 3.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 434 LFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqi 513
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL---------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 514 ipgkKYAARVAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELD 593
Cdd:COG2956 100 ----EKLLELDPDDAEALRLLAE-IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 594 RTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANgYFN 673
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE---EALELLRKALELDPSDDL-LLA 250
|
250 260
....*....|....*....|....*
gi 705689304 674 LGMLAMDDKKDVEAEAWMKKAIRLQ 698
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
544-799 |
6.73e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 125.61 E-value: 6.73e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHA 623
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 624 LELNPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRS 703
Cdd:COG2956 103 LELDPDDAEALRLLAEIYEQEGDWE---KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 704 ALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQkKDIVGAKMCFEKILELDPNNVQgKHNLCVVYFE 783
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL-GDPEEALELLRKALELDPSDDL-LLALADLLER 257
|
250
....*....|....*.
gi 705689304 784 ERDLIKAEKCLVETLA 799
Cdd:COG2956 258 KEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
566-802 |
1.59e-30 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 121.76 E-value: 1.59e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 566 YISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESG 645
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 646 DAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVL 725
Cdd:COG2956 91 LLD---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 705689304 726 EDLLRYYPDHTKGLILKGDILMnQKKDIVGAKMCFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAP 802
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYL-EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
445-673 |
1.25e-26 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 116.25 E-value: 1.25e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 445 NAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgkKYAARVA 524
Cdd:COG3914 43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALY--------------RRALALN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 525 PNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLA 604
Cdd:COG3914 109 PDNAEALFNLGNLLLALG-RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 705689304 605 IVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQLRPEAKQRLLNYVKEEPQDANGYFN 673
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
438-808 |
2.41e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 113.25 E-value: 2.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 438 ALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYMIAKSLMPQIiPGK 517
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS-PLA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 518 KY---------------------AARVAPNHLNVYInLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKM 576
Cdd:TIGR02917 264 HYlkalvdfqkknyedaretlqdALKSAPEYLPALL-LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 577 NKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALEL---NPAHKLALFNSALLMQESGDA------ 647
Cdd:TIGR02917 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELdpeNAAARTQLGISKLSQGDPSEAiadlet 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 648 --QLRPEAKQ--RLL------------------NYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSAL 705
Cdd:TIGR02917 423 aaQLDPELGRadLLLilsylrsgqfdkalaaakKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 706 FNLALLYSQTAKELMALPVLEDLLRYYPDHtKGLILKGDILMNQKKDIVGAKMCFEKILELDPNNVQGKHNLCVVYFEER 785
Cdd:TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTIDPKN-LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581
|
410 420
....*....|....*....|....
gi 705689304 786 DLIKAEKCLVETLALAP-HEEYIQ 808
Cdd:TIGR02917 582 QLKKALAILNEAADAAPdSPEAWL 605
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
404-656 |
3.43e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 105.46 E-value: 3.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 404 RISWVCLAAVLFTHALKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAH 483
Cdd:COG3914 36 ALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEAL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 484 MNVGRTYKNLNKTKEAEESYmiakslmpqiipgKKyAARVAPNHLNVYINLANLIRAnESRLEEADQLYRQAISMRPDFK 563
Cdd:COG3914 116 FNLGNLLLALGRLEEALAAL-------------RR-ALALNPDFAEAYLNLGEALRR-LGRLEEAIAALRRALELDPDNA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 564 QAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDpTEALKNFNHALELNPAHKLALFNSALLMQE 643
Cdd:COG3914 181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD-WEVYDRFEELLAALARGPSELSPFALLYLP 259
|
250
....*....|....
gi 705689304 644 SGDAQ-LRPEAKQR 656
Cdd:COG3914 260 DDDPAeLLALARAW 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
435-802 |
4.33e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 105.94 E-value: 4.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 435 FMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqii 514
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWL----------- 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 515 pgkKYAARVAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDR 594
Cdd:TIGR02917 557 ---EKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 595 TNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGdaqlRPEAKQRLLNYVKEE-PQDANGYFN 673
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK----RTESAKKIAKSLQKQhPKAALGFEL 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 674 LGMLAMDDKKDVEAEAWMKKAIRLQPNfRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQKKDI 753
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 705689304 754 VGAKMcFEKILELDPNNVQGKHNLCVVYFEERD---LIKAEKclveTLALAP 802
Cdd:TIGR02917 788 KAIKH-YQTVVKKAPDNAVVLNNLAWLYLELKDpraLEYAER----ALKLAP 834
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
528-667 |
2.77e-21 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 90.64 E-value: 2.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 528 LNVYINLANLIRANEsRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVY 607
Cdd:COG4783 4 AEALYALAQALLLAG-DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 608 IELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDaqlRPEAKQRLLNYVKEEPQD 667
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR---PDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
547-679 |
2.97e-21 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 90.45 E-value: 2.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 547 EADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALEL 626
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 705689304 627 NPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAM 679
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA---EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
520-808 |
6.00e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 6.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 520 AARVAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMnkplkAKEAYLRALELDRTNADL 599
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL-----AAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 600 WYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQlrpeakqrllnyvkeepqdangyfnlgmlam 679
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLE------------------------------- 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 680 ddkkdvEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQkKDIVGAKMC 759
Cdd:COG3914 130 ------EALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL-GRLEEAIAA 202
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 705689304 760 FEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPHEEYIQ 808
Cdd:COG3914 203 YRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
520-629 |
6.99e-20 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 86.60 E-value: 6.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 520 AARVAPNHLNVYINLANlIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADL 599
Cdd:COG4235 9 ALAANPNDAEGWLLLGR-AYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|
gi 705689304 600 WYNLAIVYIELKDPTEALKNFNHALELNPA 629
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
584-811 |
1.84e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.52 E-value: 1.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 584 EAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQLRPEAKQRLLNYVKE 663
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 664 EPQDANGYFNLGMLAmddkkdvEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKG 743
Cdd:COG3914 81 LELAALLLQALGRYE-------EALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 705689304 744 DILMNQKKDIVGAKmCFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPHEEYIQRHL 811
Cdd:COG3914 154 EALRRLGRLEEAIA-ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
443-811 |
3.43e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.22 E-value: 3.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 443 KNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNvgrtyknLNKTKEAEESYMIAKSLMpqiipgkKYAAR 522
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN-------LARIDIQEGNPDDAIQRF-------EKVLT 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 523 VAPNHLNVYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYN 602
Cdd:TIGR02917 528 IDPKNLRAILALAGLYLRT-GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 603 LAIVYIELKDPTEALKNFNHALELNPAHKLALFNSA---LLMQES----------------------GDAQL-----RPE 652
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAdayAVMKNYakaitslkralelkpdnteaqiGLAQLllaakRTE 686
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 653 AKQRLLNYVKEE-PQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNfRSALFNLALLYSQTAKELMALPVLEDLLRY 731
Cdd:TIGR02917 687 SAKKIAKSLQKQhPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKT 765
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 732 YPDHTKGLILKGDILMNQKKDIVGAKM--------------------------------CFEKILELDPNNVQGKHNLCV 779
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHyqtvvkkapdnavvlnnlawlylelkdpraleYAERALKLAPNIPAILDTLGW 845
|
410 420 430
....*....|....*....|....*....|..
gi 705689304 780 VYFEERDLIKAEKCLVETLALAPHEEYIQRHL 811
Cdd:TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
517-676 |
1.83e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.35 E-value: 1.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 517 KKYAARVAPNHLNVYINLANLiRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTN 596
Cdd:COG4785 62 RIDRALALPDLAQLYYERGVA-YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 597 ADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDaqlrPEAKQRLLNY------VKEEPQDANG 670
Cdd:COG4785 141 AYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP----EKALALLLEDwataylLQGDTEEARE 216
|
....*.
gi 705689304 671 YFNLGM 676
Cdd:COG4785 217 LFKLAL 222
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
528-733 |
3.22e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 84.58 E-value: 3.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 528 LNVYINLANLIRANESRLEEADQLYRQAIS---MRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLA 604
Cdd:COG4785 35 LALAIALADLALALAAAALAAAALAAERIDralALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 605 IVYIELKDPTEALKNFNHALELNPahklalfnsallmqesgdaqlrpeakqrllnyvkeepQDANGYFNLGMLAMDDKKD 684
Cdd:COG4785 115 LAYLLLGDYDAALEDFDRALELDP-------------------------------------DYAYAYLNRGIALYYLGRY 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 705689304 685 VEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKElmalPVLEDLLRYYP 733
Cdd:COG4785 158 ELAIADLEKALELDPNDPERALWLYLAERKLDPE----KALALLLEDWA 202
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
438-799 |
3.84e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 89.76 E-value: 3.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 438 ALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgK 517
Cdd:TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF-------------K 625
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 518 KYAARvAPNHLNVYINLANLIRANESRlEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYlRALELDRTNA 597
Cdd:TIGR02917 626 KLLAL-QPDSALALLLLADAYAVMKNY-AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA-KSLQKQHPKA 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 598 DLWYNL-AIVYIELKDPTEALKNFNHALELNP-AHKLALFNSALLmqESGDAqlrPEAKQRLLNYVKEEPQDANGYFNLG 675
Cdd:TIGR02917 703 ALGFELeGDLYLRQKDYPAAIQAYRKALKRAPsSQNAIKLHRALL--ASGNT---AEAVKTLEAWLKTHPNDAVLRTALA 777
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 676 MLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTaKELMALPVLEDLLRYYPDHTKGLILKGDILMnQKKDIVG 755
Cdd:TIGR02917 778 ELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLV-EKGEADR 855
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 705689304 756 AKMCFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLA 799
Cdd:TIGR02917 856 ALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
434-803 |
4.68e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 89.37 E-value: 4.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 434 LFMSALKVNKNN-------AKLWNNVGHALENEKNFERALQFFIQATQVQP----------------------------D 478
Cdd:TIGR02917 44 QLKNALQKDPNDaearfllGKIYLALGDYAAAEKELRKALSLGYPKNQVLPllarayllqgkfqqvldelpgktllddeG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 479 DIGAHMNVGRTYKNLNKTKEAEESYMIAKSLMPQIIPGKKYAARVA--------------------PNHLNVYINLANLI 538
Cdd:TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAlaenrfdearalidevltadPGNVDALLLKGDLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 539 RANESRlEEADQLYRQAISMRPDFKQAYISRGELLLKMNK---------------PLKAKEAYLRAL--------ELDRT 595
Cdd:TIGR02917 204 LSLGNI-ELALAAYRKAIALRPNNIAVLLALATILIEAGEfeeaekhadallkkaPNSPLAHYLKALvdfqkknyEDARE 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 596 NAD------------LWYN---------------------------------LAIVYIELKDPTEALKNFNHALELNPah 630
Cdd:TIGR02917 283 TLQdalksapeylpaLLLAgaseyqlgnleqayqylnqilkyapnshqarrlLASIQLRLGRVDEAIATLSPALGLDP-- 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 631 klalfNSALLMQESGDAQLR---PEAKQRLLNYVKE-EPQDANGYFNLGM--LAMDDKKdvEAEAWMKKAIRLQPNFRSA 704
Cdd:TIGR02917 361 -----DDPAALSLLGEAYLAlgdFEKAAEYLAKATElDPENAAARTQLGIskLSQGDPS--EAIADLETAAQLDPELGRA 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 705 LFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNqKKDIVGAKMCFEKILELDPNNVQGKHNLCVVYFEE 784
Cdd:TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLG-KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512
|
490
....*....|....*....
gi 705689304 785 RDLIKAEKCLVETLALAPH 803
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPK 531
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
499-628 |
8.81e-18 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 81.16 E-value: 8.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 499 AEESYMIAKSLMPQIIPGKKYAARVAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNK 578
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 705689304 579 PLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNP 628
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
652-770 |
5.67e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.12 E-value: 5.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 652 EAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRY 731
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 705689304 732 YPDHTKGLILKGDILMnQKKDIVGAKMCFEKILELDPNN 770
Cdd:COG4235 81 DPDNPEALYLLGLAAF-QQGDYAEAIAAWQKLLALLPAD 118
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
600-803 |
6.36e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.08 E-value: 6.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 600 WYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAM 679
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD---RAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 680 DDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEdllryypdhtkglilkgdilmnqkkdivgakmc 759
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE--------------------------------- 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 705689304 760 feKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPH 803
Cdd:COG2956 135 --RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
633-770 |
1.45e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 633 ALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLY 712
Cdd:COG4783 6 ALYALAQALLLAGDYD---EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 705689304 713 SQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQkKDIVGAKMCFEKILELDPNN 770
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL-GRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
544-629 |
4.44e-16 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 74.44 E-value: 4.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAkEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHA 623
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
|
....*.
gi 705689304 624 LELNPA 629
Cdd:COG3063 86 LELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
581-745 |
1.80e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.89 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 581 KAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPahklalfnsallmqesgdaqlrpeakqrllny 660
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP-------------------------------- 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 661 vkeepQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLI 740
Cdd:COG4235 49 -----DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
....*
gi 705689304 741 LKGDI 745
Cdd:COG4235 124 LEASI 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
450-832 |
4.94e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.74 E-value: 4.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 450 NNVGHALENEKNferalqffiqATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYMIAKSLMPqiipgkkyaarvAPNHLN 529
Cdd:TIGR02917 36 NKYKAAIIQLKN----------ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY------------PKNQVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 530 VYI-NLANLIRANESRLEEADQLYRQAismRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYI 608
Cdd:TIGR02917 94 PLLaRAYLLQGKFQQVLDELPGKTLLD---DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 609 ELKDPTEALKNFNHALELNPAhklalFNSALLMQESgdaqlrpeakqrlLNYVKEEPQDANGYFNlgmlamddkkdveae 688
Cdd:TIGR02917 171 AENRFDEARALIDEVLTADPG-----NVDALLLKGD-------------LLLSLGNIELALAAYR--------------- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 689 awmkKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGdILMNQKKDIVGAKMCFEKILELDP 768
Cdd:TIGR02917 218 ----KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA-LVDFQKKNYEDARETLQDALKSAP 292
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 705689304 769 NNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPHEEYIQRHL---NIVRSKIASLSATEQPSLPAD 832
Cdd:TIGR02917 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLasiQLRLGRVDEAIATLSPALGLD 359
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
519-665 |
5.00e-15 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 73.46 E-value: 5.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 519 YAARVAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNAD 598
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 705689304 599 LWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEP 665
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD---EAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
666-804 |
5.25e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.92 E-value: 5.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 666 QDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDI 745
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 705689304 746 LMNQkKDIVGAKMCFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPHE 804
Cdd:COG4783 82 LLKA-GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
572-665 |
9.36e-15 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 70.58 E-value: 9.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 572 LLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKnFNHALELNPAHKLALFNSALLMQESGDAQlrp 651
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....
gi 705689304 652 EAKQRLLNYVKEEP 665
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
464-598 |
1.34e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.19 E-value: 1.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 464 RALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgkKYAARVAPNHLNVYINLANLiRANES 543
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAY--------------EKALRLDPDNADALLDLAEA-LLAAG 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 705689304 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNAD 598
Cdd:COG4235 66 DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
411-562 |
2.47e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.99 E-value: 2.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 411 AAVLFTHAlKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTY 490
Cdd:COG4783 4 AEALYALA-QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 705689304 491 KNLNKTKEAEESYmiakslmpqiipgkKYAARVAPNHLNVYINLANLIRANEsRLEEADQLYRQAISMRPDF 562
Cdd:COG4783 83 LKAGDYDEALALL--------------EKALKLDPEHPEAYLRLARAYRALG-RPDEAIAALEKALELDPDD 139
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
564-745 |
9.87e-13 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 68.90 E-value: 9.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 564 QAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFN-SALLMQ 642
Cdd:TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNyGTFLCQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 643 ----ESGDAQLrpEAKQRLLNYvkeePQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKE 718
Cdd:TIGR02521 112 qgkyEQAMQQF--EQAIEDPLY----PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185
|
170 180
....*....|....*....|....*..
gi 705689304 719 LMALPVLEDLLRYYPDHTKGLILKGDI 745
Cdd:TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRI 212
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
427-593 |
1.84e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.60 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 427 DWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmia 506
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL--- 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 507 kslmpqiipgkKYAARVAPNHLNVYINLANLIRAnESRLEEADQLYRQAISMRPDfKQAYISRGELLLKMNKPLKAKEAY 586
Cdd:COG2956 202 -----------ERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALL 268
|
....*..
gi 705689304 587 LRALELD 593
Cdd:COG2956 269 ERQLRRH 275
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
544-699 |
3.15e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 65.37 E-value: 3.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 544 RLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHA 623
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 705689304 624 LELNPAHKLALFNSALLMQESGDAQlrpEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQP 699
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
438-572 |
3.95e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 64.26 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 438 ALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgk 517
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL-------------- 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 705689304 518 KYAARVAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 572
Cdd:COG4235 75 ERALALDPDNPEALYLLG-LAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
489-805 |
1.03e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 65.39 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 489 TYKNLNKTKEAEESYMIA------KSLMPQIIPGKKYAARVAPN---------HLNVYINLANLIRANESRLEEADQLYR 553
Cdd:TIGR00990 276 RPAGLEDSNELDEETGNGqlqlglKSPESKADESYEEAARAFEKaldlgklgeKEAIALNLRGTFKCLKGKHLEALADLS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 554 QAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLA 633
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 634 LFNSALLMQESGDAQLRPEAKQRLLNYVKEEPQDANGYfnlGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLallys 713
Cdd:TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYY---GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV----- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 714 qtakelmaLPvledllryypdhtkgLILKGDILMNQKKDIVGAKMCFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKC 793
Cdd:TIGR00990 508 --------LP---------------LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564
|
330
....*....|..
gi 705689304 794 LVETLALAPHEE 805
Cdd:TIGR00990 565 FERAAELARTEG 576
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
668-811 |
1.03e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 668 ANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILM 747
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 705689304 748 nQKKDIVGAKMCFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPHEEYIQRHL 811
Cdd:COG2956 88 -KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
407-512 |
1.13e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 407 WVCLAAVLFT-----HALKTLHRnwdweseytlfmsALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIG 481
Cdd:COG4783 41 FALLGEILLQlgdldEAIVLLHE-------------ALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107
|
90 100 110
....*....|....*....|....*....|.
gi 705689304 482 AHMNVGRTYKNLNKTKEAEESYMIAKSLMPQ 512
Cdd:COG4783 108 AYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
418-511 |
3.18e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.59 E-value: 3.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 418 ALKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTK 497
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|....
gi 705689304 498 EAEESYMIAKSLMP 511
Cdd:COG5010 140 EAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
438-587 |
5.46e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 5.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 438 ALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESYMiakslmpQIIPGK 517
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE-------KLEAAA 174
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 518 KYAARVAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYL 587
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
394-591 |
1.01e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.54 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 394 RKLSNKSVLRRISWVCLAAVLFTHALKtLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQAT 473
Cdd:COG4785 56 AALAAERIDRALALPDLAQLYYERGVA-YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 474 QVQPDDIGAHMNVGRTYKNLNKTKEAEESYMIAKSLMPQiipgkkyaarVAPNHLNVYINLANLiranesRLEEADQLYR 553
Cdd:COG4785 135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN----------DPERALWLYLAERKL------DPEKALALLL 198
|
170 180 190
....*....|....*....|....*....|....*...
gi 705689304 554 QAISMrpdfkqAYISRGElllkmnkPLKAKEAYLRALE 591
Cdd:COG4785 199 EDWAT------AYLLQGD-------TEEARELFKLALA 223
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
564-808 |
1.05e-09 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 60.72 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 564 QAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFnsaLLMqe 643
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKY---LYL-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 644 sgdAQLrpeakqrllnyvkEEPQDANGYFNLG---MLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLY-------- 712
Cdd:cd24142 76 ---GQL-------------SGGEEALQYYEKGieiLEEELQALQAASAEAEEEAEELKRKLSSALCALAEIYmtdlcdep 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 713 --SQTAKELmalpvLEDLLRYYPDHTKGLILKGDILMNQkKDIVGAKMCFEKILEL---------DPNNVQGKHNLCVVY 781
Cdd:cd24142 140 daEQRCEEL-----ITKALELDPTNPEALQTLASLRISQ-QRPDEAKEALRRSLELwkdlkeedeEEAEEDEAEEEDVPS 213
|
250 260
....*....|....*....|....*..
gi 705689304 782 FEERdlIKAEKCLVEtlaLAPHEEYIQ 808
Cdd:cd24142 214 YEFR--ISLAKLLIE---LEMYEEALE 235
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
410-560 |
1.29e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 410 LAAVLFTHALKTLHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRT 489
Cdd:COG5010 18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 705689304 490 YKNLNKTKEAEESYmiakslmpqiipgkKYAARVAPNHLNVYINLAnLIRANESRLEEADQLYRQAISMRP 560
Cdd:COG5010 98 YSRSGDKDEAKEYY--------------EKALALSPDNPNAYSNLA-ALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
606-734 |
2.28e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 606 VYIELKDPTEALKNFNHALELNPahklalfnsallmqesgdaqlrpeakqrllnyvkeepQDANGYFNLGMLAMDDKKDV 685
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDP-------------------------------------DNADALNNLGLLLLEQGRYD 43
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 705689304 686 EAEAWmKKAIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPD 734
Cdd:COG3063 44 EAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
455-561 |
1.05e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 455 ALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTKEAEESymiakslmpqiipgkKYAARVAPNHLNVYINL 534
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL---------------EKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|....*..
gi 705689304 535 AnLIRANESRLEEADQLYRQAISMRPD 561
Cdd:COG3063 66 A-ELLLELGDYDEALAYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
703-811 |
1.52e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 703 SALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQKkDIVGAKMCFEKILELDPNNVQGKHNLCVVYF 782
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100
....*....|....*....|....*....
gi 705689304 783 EERDLIKAEKCLVETLALAPHEEYIQRHL 811
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
677-772 |
3.71e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 677 LAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMALPvLEDLLRYYPDHTKGLILKGDILMNQkKDIVGA 756
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL-GDYDEA 78
|
90
....*....|....*.
gi 705689304 757 KMCFEKILELDPNNVQ 772
Cdd:COG3063 79 LAYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
623-768 |
4.53e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 623 ALELNPAHKLALFNSALLMQESGDAQLRPEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFR 702
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 705689304 703 SALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQkKDIVGAKMCFEKILELDP 768
Cdd:COG5010 89 ELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL-GQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
573-666 |
4.99e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.92 E-value: 4.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 573 LLKMNKPLKAKEAYLRALEL---DRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHKL---ALFNSALLMQESGD 646
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90 100
....*....|....*....|
gi 705689304 647 AQlrpEAKQRLLNYVKEEPQ 666
Cdd:COG1729 83 YD---KARATLEELIKKYPD 99
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
422-511 |
1.10e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 422 LHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFiQATQVQPDDIGAHMNVGRTYKNLNKTKEAEE 501
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 705689304 502 SYMIAKSLMP 511
Cdd:COG3063 81 YLERALELDP 90
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
581-700 |
2.24e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 51.60 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 581 KAKEAYLRALELDRTNAD---LWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDaqlrpEAKQrl 657
Cdd:PRK02603 53 EALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE-----KAEE-- 125
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 705689304 658 lnyvKEEPQDANGYFnlgmlamddkkDVEAEAWmKKAIRLQPN 700
Cdd:PRK02603 126 ----AGDQDEAEALF-----------DKAAEYW-KQAIRLAPN 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
694-817 |
2.47e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 694 AIRLQPNFRSALFNLALLYSQTAKELMALPVLEDLLRYYPDHTKGLILKGDILMNQKKDIVGAKMCFEKILELDPNNVQG 773
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 705689304 774 KHNLCVVYFEERDLIKAEKCLVETLALAPHEEYIQRHLNIVRSK 817
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
461-714 |
3.18e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 53.38 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 461 NFERALQFFIQATQVQPD-DIGAHMNVGRTYKNLNKTKEAEESymiAKSLmPQIIPGKKYAARVApnhLNVYINLAN--- 536
Cdd:COG3071 65 DYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQALAT---LEAL-RAGAPRHPQVLRLL---LQAYRQLGDwee 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 537 -------LIRANESRLEEADQLYRQAISmrpdfkqayisrgELLLKMNKPLKAKEAYLRAL-ELDRTNADLWYNLAIVYI 608
Cdd:COG3071 138 llellpaLRKHKALSAEEAQALERRAYL-------------GLLRQAARDAEALKALWKALpRAERRDPELAAAYARALI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 609 ELKDPTEALKNFNHALELNPAHKLALfnsalLMQESGDAQLrPEAKQRLLNYVKEEPQDANGYFNLGMLAMDDKKDVEAE 688
Cdd:COG3071 205 ALGDHDEAERLLREALKRQWDPRLVR-----LYGRLQGGDP-AKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAR 278
|
250 260
....*....|....*....|....*.
gi 705689304 689 AWMKKAIRLQPNfRSALFNLALLYSQ 714
Cdd:COG3071 279 EYLEAALALRPS-AEAYAELARLLEQ 303
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
597-628 |
1.31e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.49 E-value: 1.31e-06
10 20 30
....*....|....*....|....*....|..
gi 705689304 597 ADLWYNLAIVYIELKDPTEALKNFNHALELNP 628
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
541-633 |
1.66e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.68 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 541 NESRLEEADQLYRQAISMRPDFK---QAYISRGELLLKMNKPLKAKEAYLRALEL---DRTNADLWYNLAIVYIELKDPT 614
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYD 84
|
90
....*....|....*....
gi 705689304 615 EALKNFNHALELNPAHKLA 633
Cdd:COG1729 85 KARATLEELIKKYPDSEAA 103
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
418-609 |
2.27e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.52 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 418 ALKTLHRNwDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALQFFIQATQVQPDDIGAHMNVGRTYKNLNKTK 497
Cdd:TIGR00990 372 ASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 498 EAEESYMIAKSLMPQI--IPG----------------KKYAARVA------PNHLNV--YINLANLIRANESRLEEADQL 551
Cdd:TIGR00990 451 SSMATFRRCKKNFPEApdVYNyygellldqnkfdeaiEKFDTAIEleketkPMYMNVlpLINKALALFQWKQDFIEAENL 530
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 705689304 552 YRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYnlAIVYIE 609
Cdd:TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ--AISYAE 586
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
585-618 |
3.02e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 44.46 E-value: 3.02e-06
10 20 30
....*....|....*....|....*....|....
gi 705689304 585 AYLRALELDRTNADLWYNLAIVYIELKDPTEALK 618
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
597-630 |
3.82e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.36 E-value: 3.82e-06
10 20 30
....*....|....*....|....*....|....
gi 705689304 597 ADLWYNLAIVYIELKDPTEALKNFNHALELNPAH 630
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
597-628 |
5.32e-06 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 43.67 E-value: 5.32e-06
10 20 30
....*....|....*....|....*....|..
gi 705689304 597 ADLWYNLAIVYIELKDPTEALKNFNHALELNP 628
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
565-629 |
1.11e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.30 E-value: 1.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 705689304 565 AYISRGELLLKMNKPLKAKEAYLRALEL-------DRTN-ADLWYNLAIVYIELKDPTEALKNFNHALELNPA 629
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpDHPLtATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
602-825 |
3.20e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.06 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 602 NLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQLRPEAKQRLLNYVKEE---PQDANGYFNLGMLA 678
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 679 MDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKELMAlpvLEDllryypdhtkglilkgdilmnqkkdivgakm 758
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAA---LED------------------------------- 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 705689304 759 cFEKILELDPNNVQGKHNLCVVYFEERDLIKAEKCLVETLALAPHEEYIQRHLNIVRSKIASLSATE 825
Cdd:COG4785 130 -FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALA 195
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
651-735 |
3.30e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 651 PEAKQRLLNYVKEEPQD---ANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPN---FRSALFNLALLYSQTAKELMALPV 724
Cdd:COG1729 10 DEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARAT 89
|
90
....*....|.
gi 705689304 725 LEDLLRYYPDH 735
Cdd:COG1729 90 LEELIKKYPDS 100
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
433-626 |
5.52e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.08 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 433 TLFMSALKVNKNNAKLWNNVGHA-LENEkNFERALQFFIQATQVQPDD-IGAHMNVGRtyknLNKTKEAEESYMIAKSLM 510
Cdd:cd24142 21 KFLQRALELEPNNVEALELLGEIlLELG-DVEEAREVLLRAIELDPDGgYEKYLYLGQ----LSGGEEALQYYEKGIEIL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 511 PQIipgkkyaarvapnhlnvyinLANLIRANESRLEEADQLYRQAISmrpdfkqAYISRGELL---LKMNKPLKAK-EAY 586
Cdd:cd24142 96 EEE--------------------LQALQAASAEAEEEAEELKRKLSS-------ALCALAEIYmtdLCDEPDAEQRcEEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 705689304 587 L-RALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALEL 626
Cdd:cd24142 149 ItKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
537-720 |
7.20e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 45.70 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 537 LIRANE----SRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELD-RTNADLWYNLAivyiELK 611
Cdd:cd24142 4 LEKAEElldqGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDpDGGYEKYLYLG----QLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 612 DPTEALKNFNHALELnpahkLALFNSALLMQESGDAQLRPEAKQRLlnyvkeepqdANGYFNLGMLAMDD---KKDVEA- 687
Cdd:cd24142 80 GGEEALQYYEKGIEI-----LEEELQALQAASAEAEEEAEELKRKL----------SSALCALAEIYMTDlcdEPDAEQr 144
|
170 180 190
....*....|....*....|....*....|....*....
gi 705689304 688 -EAWMKKAIRLQPNFRSALFNLA-LLYSQT----AKELM 720
Cdd:cd24142 145 cEELITKALELDPTNPEALQTLAsLRISQQrpdeAKEAL 183
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
581-707 |
1.40e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 45.16 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 581 KAKEA------------YLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNP----AH--------KLALFN 636
Cdd:PLN03088 8 KAKEAfvdddfalavdlYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPslakAYlrkgtacmKLEEYQ 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 705689304 637 SALLMQESGdAQLRPEaKQRLLNYVKE-------EPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFN 707
Cdd:PLN03088 88 TAKAALEKG-ASLAPG-DSRFTKLIKEcdekiaeEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFYQ 163
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
676-769 |
1.98e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.52 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 676 MLAMDDKKDVEAEAWMKKAIRLQPNFR---SALFNLALLYSQTAKELMALPVLEDLLRYYPDHTK---GLILKGDILMNQ 749
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 705689304 750 kKDIVGAKMCFEKILELDPN 769
Cdd:COG1729 81 -GDYDKARATLEELIKKYPD 99
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
564-607 |
2.05e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 2.05e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 705689304 564 QAYISRGELLlkmnkplKAKEAYLRALELDRTNADLWYNLAIVY 607
Cdd:pfam13414 2 DAYYEQGKYE-------EAIEAYKKALKLDPDNPEAYYNLGLAY 38
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
597-629 |
2.13e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.30 E-value: 2.13e-04
10 20 30
....*....|....*....|....*....|...
gi 705689304 597 ADLWYNLAIVYIELKDPTEALKNFNHALELNPA 629
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
569-630 |
2.20e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.40 E-value: 2.20e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 705689304 569 RGELLLKMNKPLKAKEAYLRALELDRT---NADLWYNLAIVYIELKDPTEALKNFNHALELNPAH 630
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
588-771 |
5.42e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 588 RALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNP-AHKLALFNSAL------LMQESGDAQLR----PEAKQR 656
Cdd:PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPhSSNRDKWESLLkvnrywLLIQQGDAALKannlAQAERL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 657 LLNYVKEEPQDANGYFNLGMLAMDDKKDVEAEAWMKKAIRLQPNFRSALFNLALLYSQTAKE-----LMALPV-----LE 726
Cdd:PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEkalafIASLSAsqrrsID 453
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 705689304 727 DLLRYYpdHTKGLILKGDILMNQkKDIVGAKMCFEKILELDPNNV 771
Cdd:PRK11447 454 DIERSL--QNDRLAQQAEALENQ-GKWAQAAELQRQRLALDPGSV 495
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
564-596 |
6.05e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 6.05e-04
10 20 30
....*....|....*....|....*....|...
gi 705689304 564 QAYISRGELLLKMNKPLKAKEAYLRALELDRTN 596
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
582-700 |
9.16e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.15 E-value: 9.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 582 AKEAYLRALELDRTNAD---LWYNLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGDAQLRpeakqrll 658
Cdd:CHL00033 54 ALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE-------- 125
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 705689304 659 nyvKEEPQDANGYFnlgmlamddkkDVEAEAWmKKAIRLQPN 700
Cdd:CHL00033 126 ---QGDSEIAEAWF-----------DQAAEYW-KQAIALAPG 152
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
564-596 |
9.62e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 9.62e-04
10 20 30
....*....|....*....|....*....|...
gi 705689304 564 QAYISRGELLLKMNKPLKAKEAYLRALELDRTN 596
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
597-657 |
9.74e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 9.74e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 705689304 597 ADLWYNLAIVYIELKDPTEALKNFNHALEL--------NPAHKLALFNSALLMQESGDAQlrpEAKQRL 657
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYE---EALELL 68
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
446-479 |
1.28e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 1.28e-03
10 20 30
....*....|....*....|....*....|....
gi 705689304 446 AKLWNNVGHALENEKNFERALQFFIQATQVQPDD 479
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
446-479 |
1.35e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 1.35e-03
10 20 30
....*....|....*....|....*....|....
gi 705689304 446 AKLWNNVGHALENEKNFERALQFFIQATQVQPDD 479
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
505-659 |
2.24e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 41.33 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 505 IAKSLmpQIIPGKKYAARVApnHLnvYINLANLIRANeSRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKE 584
Cdd:PRK11788 163 VAERL--EKLGGDSLRVEIA--HF--YCELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 585 AYLRALE---------LDRtnadlwynLAIVYIELKDPTEALKNFNHALELNPAHKLALFNSALLMQESGdaqlrPEAKQ 655
Cdd:PRK11788 236 ALERVEEqdpeylsevLPK--------LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG-----PEAAQ 302
|
....
gi 705689304 656 RLLN 659
Cdd:PRK11788 303 ALLR 306
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
582-628 |
3.67e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 3.67e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 705689304 582 AKEAYLRALELDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNP 628
Cdd:pfam14559 7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADP 53
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
455-572 |
4.61e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 455 ALENEKNFERALQFFIQATQVQPDDI---GAHMNVGRTYKNLNKTKEAEESYmiakslmpqiipgkKYAARVAPNH---L 528
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAF--------------EKLLKRYPDSpkaP 67
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 705689304 529 NVYINLAnLIRANESRLEEADQLYRQAISMRPDFKQAYISRGEL 572
Cdd:COG1729 68 DALLKLG-LSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
570-631 |
4.95e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.87 E-value: 4.95e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 705689304 570 GELLLKMNKPLKAKEAYLRALE-LDRTNADLWYNLAIVYIELKDPTEALKNFNHALELNPAHK 631
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFK 158
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
542-604 |
7.23e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 7.23e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 705689304 542 ESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAKEAYLRALELDRTNADLWYNLA 604
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
|
|
| racA |
PRK13182 |
chromosome-anchoring protein RacA; |
846-915 |
7.81e-03 |
|
chromosome-anchoring protein RacA;
Pssm-ID: 237292 [Multi-domain] Cd Length: 175 Bit Score: 38.49 E-value: 7.81e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 846 VQNLKEVKNEQKTTQTTIDNNKGPSKNKKRTEKNdmdKEIPKKSTKEIKDIEKKRVAALKRLEEIERILN 915
Cdd:PRK13182 43 LQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVN---TIVQNISSVDFEQLEAQLNTITRRLDELERQLQ 109
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
538-696 |
9.97e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 39.49 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 538 IRANESRLEEADQLYRQAISMRPDFKQAYISRGELLLKMNKPLKAkeayLRALEldrtnaDLWYN-----LAIVYIELK- 611
Cdd:COG3898 236 RELEEGDPDEARELAIEALKLAPDLVPAAVLAARLLIAQGKLRKA----AKVLE------KAWRAqphpdLAAAYAELRp 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705689304 612 --DPTEALKNFNHALELNPAH---KLALFNSALlmqesgDAQLRPEAKQRLLNYVKEEPqDANGYfnlGMLAmddkkDVE 686
Cdd:COG3898 306 gdSALDRLKRAETLAALNPDHpesRLALAEAAL------AAGDFGEARRALGPLLEERP-TARVC---LLMA-----EIE 370
|
170
....*....|....*....
gi 705689304 687 ---------AEAWMKKAIR 696
Cdd:COG3898 371 rgehgddgrVREWLARALR 389
|
|
| |
