PREDICTED: DNA repair protein RAD51 homolog 1 isoform X2 [Charadrius vociferus]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
recomb_RAD51 super family | cl37082 | DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
25-258 | 2.01e-176 | ||||
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). The actual alignment was detected with superfamily member TIGR02239: Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 488.08 E-value: 2.01e-176
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Name | Accession | Description | Interval | E-value | |||||
recomb_RAD51 | TIGR02239 | DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
25-258 | 2.01e-176 | |||||
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 488.08 E-value: 2.01e-176
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PTZ00035 | PTZ00035 | Rad51 protein; Provisional |
3-258 | 1.58e-162 | |||||
Rad51 protein; Provisional Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 454.07 E-value: 1.58e-162
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Rad51 | cd19513 | RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
102-258 | 6.19e-131 | |||||
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion. Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 370.11 E-value: 6.19e-131
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Rad51 | pfam08423 | Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
84-258 | 4.58e-128 | |||||
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein. Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 363.55 E-value: 4.58e-128
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RecA | COG0468 | RecA/RadA recombinase [Replication, recombination and repair]; |
94-227 | 4.94e-16 | |||||
RecA/RadA recombinase [Replication, recombination and repair]; Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 76.36 E-value: 4.94e-16
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AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
119-251 | 1.38e-04 | |||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.20 E-value: 1.38e-04
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Name | Accession | Description | Interval | E-value | |||||
recomb_RAD51 | TIGR02239 | DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
25-258 | 2.01e-176 | |||||
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 488.08 E-value: 2.01e-176
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PTZ00035 | PTZ00035 | Rad51 protein; Provisional |
3-258 | 1.58e-162 | |||||
Rad51 protein; Provisional Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 454.07 E-value: 1.58e-162
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PLN03186 | PLN03186 | DNA repair protein RAD51 homolog; Provisional |
1-258 | 1.51e-161 | |||||
DNA repair protein RAD51 homolog; Provisional Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 451.49 E-value: 1.51e-161
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Rad51 | cd19513 | RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
102-258 | 6.19e-131 | |||||
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion. Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 370.11 E-value: 6.19e-131
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Rad51 | pfam08423 | Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
84-258 | 4.58e-128 | |||||
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein. Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 363.55 E-value: 4.58e-128
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PLN03187 | PLN03187 | meiotic recombination protein DMC1 homolog; Provisional |
4-258 | 6.05e-108 | |||||
meiotic recombination protein DMC1 homolog; Provisional Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 315.95 E-value: 6.05e-108
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recomb_DMC1 | TIGR02238 | meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
25-258 | 1.07e-106 | |||||
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 311.71 E-value: 1.07e-106
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Rad51_DMC1_archRadA | cd01123 | recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
102-258 | 7.03e-105 | |||||
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 304.07 E-value: 7.03e-105
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radA | PRK04301 | DNA repair and recombination protein RadA; Validated |
32-257 | 1.13e-93 | |||||
DNA repair and recombination protein RadA; Validated Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 278.68 E-value: 1.13e-93
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DMC1 | cd19514 | homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
102-258 | 5.59e-84 | |||||
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings. Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 251.12 E-value: 5.59e-84
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recomb_radA | TIGR02236 | DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
32-257 | 7.03e-83 | |||||
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 250.82 E-value: 7.03e-83
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archRadA | cd19515 | archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
102-257 | 1.88e-76 | |||||
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR) Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 231.87 E-value: 1.88e-76
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XRCC3 | cd19491 | XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
109-258 | 1.14e-36 | |||||
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site. Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 130.10 E-value: 1.14e-36
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RecA-like | cd01393 | RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
120-258 | 6.88e-33 | |||||
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB. Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 118.61 E-value: 6.88e-33
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radB | PRK09361 | DNA repair and recombination protein RadB; Provisional |
102-256 | 7.45e-28 | |||||
DNA repair and recombination protein RadB; Provisional Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 106.48 E-value: 7.45e-28
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archRadB | cd01394 | archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
102-256 | 1.85e-27 | |||||
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear. Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 105.09 E-value: 1.85e-27
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Rad51B | cd19493 | RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
110-258 | 3.11e-25 | |||||
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 99.70 E-value: 3.11e-25
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recomb_radB | TIGR02237 | DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
109-256 | 2.90e-23 | |||||
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 94.02 E-value: 2.90e-23
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Rad51C | cd19492 | RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
120-256 | 3.63e-18 | |||||
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling. Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 79.19 E-value: 3.63e-18
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RecA | COG0468 | RecA/RadA recombinase [Replication, recombination and repair]; |
94-227 | 4.94e-16 | |||||
RecA/RadA recombinase [Replication, recombination and repair]; Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 76.36 E-value: 4.94e-16
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Rad51D | cd19489 | RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
114-258 | 3.79e-15 | |||||
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 71.90 E-value: 3.79e-15
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XRCC2 | cd19490 | XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
120-255 | 8.32e-13 | |||||
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site. Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 65.83 E-value: 8.32e-13
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RAD55 | COG0467 | RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
102-256 | 1.20e-10 | |||||
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 59.54 E-value: 1.20e-10
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RepA | COG3598 | RecA-family ATPase [Replication, recombination and repair]; |
112-259 | 8.15e-10 | |||||
RecA-family ATPase [Replication, recombination and repair]; Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 58.37 E-value: 8.15e-10
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HHH_5 | pfam14520 | Helix-hairpin-helix domain; |
32-80 | 1.75e-08 | |||||
Helix-hairpin-helix domain; Pssm-ID: 434010 [Multi-domain] Cd Length: 57 Bit Score: 49.79 E-value: 1.75e-08
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AAA_25 | pfam13481 | AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
88-259 | 1.81e-07 | |||||
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 50.07 E-value: 1.81e-07
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RecA | cd00983 | recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
102-254 | 1.09e-06 | |||||
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 48.32 E-value: 1.09e-06
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PRK06067 | PRK06067 | flagellar accessory protein FlaH; Validated |
102-258 | 3.20e-06 | |||||
flagellar accessory protein FlaH; Validated Pssm-ID: 180381 Cd Length: 234 Bit Score: 46.89 E-value: 3.20e-06
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RecA | pfam00154 | recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
94-254 | 1.21e-04 | |||||
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 42.39 E-value: 1.21e-04
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PRK09302 | PRK09302 | circadian clock protein KaiC; Reviewed |
88-163 | 1.38e-04 | |||||
circadian clock protein KaiC; Reviewed Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 42.95 E-value: 1.38e-04
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AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
119-251 | 1.38e-04 | |||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.20 E-value: 1.38e-04
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KaiC-like | cd01124 | Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
102-181 | 1.90e-04 | |||||
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 41.48 E-value: 1.90e-04
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MUS81 | COG1948 | ERCC4-type crossover junction endonuclease [Replication, recombination and repair]; |
41-74 | 3.26e-04 | |||||
ERCC4-type crossover junction endonuclease [Replication, recombination and repair]; Pssm-ID: 441551 [Multi-domain] Cd Length: 214 Bit Score: 40.93 E-value: 3.26e-04
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RadA_SMS_N | cd01121 | bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
97-234 | 6.99e-04 | |||||
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules. Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 40.21 E-value: 6.99e-04
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nusA_Cterm_rpt | TIGR01954 | transcription termination factor NusA, C-terminal duplication; NusA is a bacterial ... |
33-78 | 7.18e-04 | |||||
transcription termination factor NusA, C-terminal duplication; NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic. [Transcription, Transcription factors] Pssm-ID: 273894 [Multi-domain] Cd Length: 50 Bit Score: 36.90 E-value: 7.18e-04
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FlaH | COG2874 | Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
102-137 | 1.19e-03 | |||||
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; Pssm-ID: 442121 Cd Length: 230 Bit Score: 39.05 E-value: 1.19e-03
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PRK08533 | PRK08533 | flagellar accessory protein FlaH; Reviewed |
98-141 | 3.28e-03 | |||||
flagellar accessory protein FlaH; Reviewed Pssm-ID: 181459 Cd Length: 230 Bit Score: 37.74 E-value: 3.28e-03
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KaiC-like_C | cd19487 | C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
102-136 | 4.96e-03 | |||||
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation. Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 37.28 E-value: 4.96e-03
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Blast search parameters | ||||
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