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Conserved domains on  [gi|698535262|ref|XP_009764129|]
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PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Nicotiana sylvestris]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1907908)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAR1 super family cl44389
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 51-137 9.62e-22

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


The actual alignment was detected with superfamily member pfam03101:

Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 85.08  E-value: 9.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698535262   51 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGC--RGIPDNQRSGSIANQKRDRRRDGCTAMILVKREKPGMWVVRKFV 128
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCskEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 698535262  129 RDHNHPLVI 137
Cdd:pfam03101  82 KEHNHELLP 90
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 51-137 9.62e-22

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 85.08  E-value: 9.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698535262   51 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGC--RGIPDNQRSGSIANQKRDRRRDGCTAMILVKREKPGMWVVRKFV 128
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCskEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 698535262  129 RDHNHPLVI 137
Cdd:pfam03101  82 KEHNHELLP 90
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 19-136 3.18e-14

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 70.79  E-value: 3.18e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698535262  19 SSEIGQVSTSEADRTQEPYEGMPFESEEAARAYYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSGSIAN 98
Cdd:PLN03097  57 NSPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFN 136

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 698535262  99 QKRDRR---------------RDGCTAMILVKREKPGMWVVRKFVRDHNHPLV 136
Cdd:PLN03097 137 RPRARQtkqdpengtgrrscaKTDCKASMHVKRRPDGKWVIHSFVKEHNHELL 189
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 51-137 9.62e-22

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 85.08  E-value: 9.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698535262   51 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGC--RGIPDNQRSGSIANQKRDRRRDGCTAMILVKREKPGMWVVRKFV 128
Cdd:pfam03101   2 FYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCskEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQFV 81


                  ....*....
gi 698535262  129 RDHNHPLVI 137
Cdd:pfam03101  82 KEHNHELLP 90
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 19-136 3.18e-14

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 70.79  E-value: 3.18e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698535262  19 SSEIGQVSTSEADRTQEPYEGMPFESEEAARAYYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSGSIAN 98
Cdd:PLN03097  57 NSPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFN 136

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 698535262  99 QKRDRR---------------RDGCTAMILVKREKPGMWVVRKFVRDHNHPLV 136
Cdd:PLN03097 137 RPRARQtkqdpengtgrrscaKTDCKASMHVKRRPDGKWVIHSFVKEHNHELL 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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