NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|698431998|ref|XP_009697415|]
View 

PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Cariama cristata]

Protein Classification

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase( domain architecture ID 18657010)

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, also called O-linked N-acetylglucosamine transferase (OGT), is a glycosyltransferase family 41 protein containing tetratricopeptide (TPR) repeats that catalyzes the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 459-998 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


:

Pssm-ID: 404688  Cd Length: 543  Bit Score: 1165.24  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   459 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKASEGR 538
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   539 LRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHI 618
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   619 LINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDHANMFPHL 698
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   699 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDSC---DNADGNAALSMPVIPMNTiAEAVIEMINR 774
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVETtgnSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   775 GQIQITINGFNISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSV 854
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   855 LWLLRFPAVGEPNIQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLA 934
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLA 479

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   935 SRVAASQLTCLGCLELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDL 998
Cdd:pfam13844  480 SRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-440 7.57e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 177.61  E-value: 7.57e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  173 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 252
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  253 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 332
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  333 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 412
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                         250       260
                  ....*....|....*....|....*...
gi 698431998  413 DAHSNLASIHKDSGNIPEAIASYRTALK 440
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-272 7.96e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 150.93  E-value: 7.96e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   65 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 144
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  145 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 224
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 698431998  225 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
15-104 1.32e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


:

Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.42  E-value: 1.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   15 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 94
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                          90
                  ....*....|
gi 698431998   95 YRHALRLKPD 104
Cdd:COG3063    82 LERALELDPS 91
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 459-998 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1165.24  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   459 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKASEGR 538
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   539 LRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHI 618
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   619 LINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDHANMFPHL 698
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   699 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDSC---DNADGNAALSMPVIPMNTiAEAVIEMINR 774
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVETtgnSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   775 GQIQITINGFNISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSV 854
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   855 LWLLRFPAVGEPNIQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLA 934
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLA 479

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   935 SRVAASQLTCLGCLELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDL 998
Cdd:pfam13844  480 SRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 229-1009 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 581.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  229 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPT 308
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  309 HADSLNNLanikREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 388
Cdd:COG3914    81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  389 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 468
Cdd:COG3914   157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  469 MKKLvsivaDQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKinvlHKPPYEHPKDLKASEGRLRIGYVSSDF 548
Cdd:COG3914   237 EELL-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----AAPELPPPPNPRDPDRKLRIGYVSADF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  549 GNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDgTNFRVKVMAEANHFIDLSQIPcNGKAADRIHQDGIHILINMNGYTKG 628
Cdd:COG3914   308 RRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDD-DALTQRLRAAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGHTAG 385

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  629 ARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFigdhanmfphlkkkavidfks 708
Cdd:COG3914   386 NRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL--------------------- 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  709 nghiydnrivlngidlkafldslpdvkivkmkCPDSCDNAdgnaalsmPVIPmntiaeavieminrgqiqitingfnisn 788
Cdd:COG3914   445 --------------------------------CYQPNDRA--------PEVA---------------------------- 456

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  789 glattqinnkaatgeEVPrtiivtTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP-AVGEPN 867
Cdd:COG3914   457 ---------------PLP------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARER 515

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  868 IQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 947
Cdd:COG3914   516 LRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGL 595

                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 698431998  948 LELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDLERLYLQMWDHY 1009
Cdd:COG3914   596 PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-440 7.57e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 177.61  E-value: 7.57e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  173 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 252
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  253 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 332
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  333 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 412
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                         250       260
                  ....*....|....*....|....*...
gi 698431998  413 DAHSNLASIHKDSGNIPEAIASYRTALK 440
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-272 7.96e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 150.93  E-value: 7.96e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   65 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 144
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  145 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 224
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 698431998  225 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 5-448 1.39e-40

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 162.18  E-value: 1.39e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     5 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 84
Cdd:TIGR02917  228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    85 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 164
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   165 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 244
Cdd:TIGR02917  388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   245 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQG 324
Cdd:TIGR02917  468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   325 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 404
Cdd:TIGR02917  548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 698431998   405 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 448
Cdd:TIGR02917  628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 3-264 3.91e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 109.40  E-value: 3.91e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     3 SFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 82
Cdd:TIGR02917  634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    83 KERGQLQEAIEHYRHALRLKPDfIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 162
Cdd:TIGR02917  714 LRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   163 YLKAIETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALSLSP 239
Cdd:TIGR02917  793 YQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAP 868

                          250       260
                   ....*....|....*....|....*
gi 698431998   240 NHAVVHGNLACVYYEQGLIDLAIDT 264
Cdd:TIGR02917  869 EAAAIRYHLALALLATGRKAEARKE 893
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 197-495 3.90e-15

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 78.71  E-value: 3.90e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  197 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 276
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  277 daycNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---------- 346
Cdd:NF033758  125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  347 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 402
Cdd:NF033758  201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  403 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLE 481
Cdd:NF033758  281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360

                         330
                  ....*....|....
gi 698431998  482 knrLPSVHPHHSML 495
Cdd:NF033758  361 ---LNAEAPVFGLL 371
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
15-104 1.32e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.42  E-value: 1.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   15 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 94
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                          90
                  ....*....|
gi 698431998   95 YRHALRLKPD 104
Cdd:COG3063    82 LERALELDPS 91
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 276-375 1.71e-12

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 68.73  E-value: 1.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  276 PDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 355
Cdd:NF033920  156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                          90       100
                  ....*....|....*....|
gi 698431998  356 QQGKLQEALMHYKEAIRISP 375
Cdd:NF033920  236 AQGCTAQARAAAECALALAP 255
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 150-340 8.05e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 67.27  E-value: 8.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  150 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVL--KEA-RIFD 225
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSggEEAlQYYE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  226 RAVAAYLRALslspnhavvhgnlacvyyeQGLIDLAIDTYRRAIELQPHFPDAYCNLA-----NALKEKGSVVEAEECYN 300
Cdd:cd24142    90 KGIEILEEEL-------------------QALQAASAEAEEEAEELKRKLSSALCALAeiymtDLCDEPDAEQRCEELIT 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 698431998  301 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 340
Cdd:cd24142   151 KALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
TPR_12 pfam13424
Tetratricopeptide repeat;
310-373 1.38e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.25  E-value: 1.38e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 373
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 84-445 1.77e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.49  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   84 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCvRSDLGNLLKAlGRleeakacY 163
Cdd:PRK11447  281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKV-NR-------Y 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  164 LKAIEtQPNFAVAWSNLGcvfnaqgeiwLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 242
Cdd:PRK11447  352 WLLIQ-QGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTN 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  243 VVHGnLACVYYEQG-------LIDL------AIDTYRRAIELqphfpDAYCNLANALKEKGSVVEAEECYNTALRLCPTH 309
Cdd:PRK11447  421 AVRG-LANLYRQQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------EFAAAHSN--------------------- 349
Cdd:PRK11447  495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsd 574

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  350 ----LASVLQQQGKLQEA--LMHYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIH 422
Cdd:PRK11447  575 qvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVD 647

                         410       420
                  ....*....|....*....|...
gi 698431998  423 KDSGNIPEAiasyRTALKLKPDF 445
Cdd:PRK11447  648 IAQGDLAAA----RAQLAKLPAT 666
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 64-137 1.03e-09

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 60.26  E-value: 1.03e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   64 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 137
Cdd:NF033920  182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 15-364 1.00e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 59.55  E-value: 1.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   15 YQAGDFEAAERHC---MQLWRQ--EPDNTGVLLL---LSSIHFQ------CRRLDRSA-------------HFSTLAikq 67
Cdd:NF040586  403 YLRGDYESARDLAeraLERWRErlGPDDRQTLRLrfhLANALRSlgryeeARELDEDTlerqrrvlglgedHPHTLM--- 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   68 npllaeAYSNLGNVYKERGQLQEAIEHYRHALR-----LKPDfiDGYI-----NLAAALVAAGDmegavqaYVSALQYNP 137
Cdd:NF040586  480 ------TAGGLGADLRALGRFREALELDEETLErhrrvFGED--HPRTlraanNLAVSLRLLGD-------YREALELDR 544

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  138 DLYCVRSDLGNllkalgrleeakacylkaiETQPNFAVAWSNLGCVFNAQGEiwlaihhFEKAVTLdpnfldayinlgnv 217
Cdd:NF040586  545 EVLRRRRRVLG-------------------PDHPRTLLSANNLARDLRELGR-------YAEALDL-------------- 584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  218 LKEARifdravaAYLRALSLSPNHAVVHG---NLA-----CVYYEQGLiDLAIDTYRRAIELQ-PHFPD---AYCNLANA 285
Cdd:NF040586  585 LEEAL-------ERYREVLGGPDHPDTLRaakSLAvalrrAGRLEEAL-ELAEDTYERYRRRFgPDHPDtlaAALSLAND 656

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  286 LKEKG----SVVEAEECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAh 347
Cdd:NF040586  657 LRALGdadeARELAREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALEGLRErlgpdhpytlAAAV- 735

                         410
                  ....*....|....*..
gi 698431998  348 sNLASVLQQQGKLQEAL 364
Cdd:NF040586  736 -NLANDLAALGDLDAAL 751
TPR_1 pfam00515
Tetratricopeptide repeat;
72-105 2.50e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.50  E-value: 2.50e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 105
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 72-105 9.56e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 48.98  E-value: 9.56e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998     72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 105
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 249-341 7.39e-07

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 51.78  E-value: 7.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  249 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 327
Cdd:NF033920  162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                          90
                  ....*....|....
gi 698431998  328 EAVRLYRKALEVFP 341
Cdd:NF033920  242 QARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 17-355 7.77e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 49.92  E-value: 7.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   17 AGDFEAAERHCMQLWRQEpdntgvllllssihfqcRRLDRSAHFSTLAikqnpllaeAYSNLGNVYKERGQLQEAIEHYR 96
Cdd:NF040586  533 LGDYREALELDREVLRRR-----------------RRVLGPDHPRTLL---------SANNLARDLRELGRYAEALDLLE 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   97 HALR------LKPDFIDGYI---NLAAALVAAGDMEGA-------VQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEA 159
Cdd:NF040586  587 EALEryrevlGGPDHPDTLRaakSLAVALRRAGRLEEAlelaedtYERYRRRFGpDHPDTLAAALSLANDLRALGDADEA 666

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  160 kacyLKAIETqpnfavawsnlgcvfnaqgeiwlAIHHFEKAVTLD-PNFLDAYINLGNVLK------EARIFDRAVAAYL 232
Cdd:NF040586  667 ----RELARE-----------------------VLDRYRRVLGEDhPFTLACRNNLAVLLRalgdpeEARELAEAALEGL 719

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  233 RAlSLSPNH------AVvhgNLACVYYEQGLIDLAIDTYRRAielqphfpdaycnlanalkekgsvvEAEECYNTALRLC 306
Cdd:NF040586  720 RE-RLGPDHpytlaaAV---NLANDLAALGDLDAALGEEALE-------------------------RLRRLLGEDLRAG 770

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 698431998  307 PTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQ 355
Cdd:NF040586  771 PDHPDTLacaANLALDLRATGRTEEAEELRADTLARLRRvLGPDHPDTVAARE 823
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 220-491 1.93e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 48.76  E-value: 1.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  220 EARIFDRAVAAYLRALsLSPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLANA 285
Cdd:NF040586  496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLARD 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  286 LKEKGSVVEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVRL----YRKALEVF----PEFAAAHS 348
Cdd:NF040586  572 LRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAAL 651

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  349 NLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH--- 415
Cdd:NF040586  652 SLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpyt 730

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  416 ----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVADQ 479
Cdd:NF040586  731 laaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLAR 806

                         330
                  ....*....|..
gi 698431998  480 LEKnRLPSVHPH 491
Cdd:NF040586  807 LRR-VLGPDHPD 817
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 310-343 2.60e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.60e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 343
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 86-219 3.24e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.43  E-value: 3.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   86 GQLQEAIEHYRHALRLKPDFID-GYI--NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAc 162
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998  163 ylkaietQPNFAVAWsnlgcvFNAQGEIWlaihhfEKAVTLDPNfldAYINLGNVLK 219
Cdd:PRK02603  128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 70-271 3.72e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.85  E-value: 3.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   70 LLAEAysnlgNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------LYcvr 143
Cdd:cd24142     3 LLEKA-----EELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekyLY--- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  144 sdLGNLLKAlgrlEEAKACYLKAIE-------TQPNFAVAWSNLGCVFNAQ--------GEIWLAIHHFEKavtldpnfl 208
Cdd:cd24142    75 --LGQLSGG----EEALQYYEKGIEileeelqALQAASAEAEEEAEELKRKlssalcalAEIYMTDLCDEP--------- 139

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998  209 DAyinlgnvlkEARifdraVAAYL-RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 271
Cdd:cd24142   140 DA---------EQR-----CEELItKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
TPR_12 pfam13424
Tetratricopeptide repeat;
7-104 4.10e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 4.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     7 LAELAHREYQAGDFEAAERH---CMQLWRQEPDntgvllllssihfqcrrldrsahfstlaiKQNPLLAEAYSNLGNVYK 83
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELlekALEIARRLLG-----------------------------PDHPLTATTLLNLGRLYL 56

                           90       100
                   ....*....|....*....|.
gi 698431998    84 ERGQLQEAIEHYRHALRLKPD 104
Cdd:pfam13424   57 ELGRYEEALELLERALALAEK 77
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 193-273 3.66e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.31  E-value: 3.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  193 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:NF033920  175 ALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALA 254


                  .
gi 698431998  273 P 273
Cdd:NF033920  255 P 255
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 459-998 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1165.24  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   459 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKASEGR 538
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   539 LRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHI 618
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   619 LINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDHANMFPHL 698
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   699 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDSC---DNADGNAALSMPVIPMNTiAEAVIEMINR 774
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVETtgnSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   775 GQIQITINGFNISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSV 854
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   855 LWLLRFPAVGEPNIQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLA 934
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLA 479

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   935 SRVAASQLTCLGCLELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDL 998
Cdd:pfam13844  480 SRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 229-1009 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 581.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  229 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPT 308
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  309 HADSLNNLanikREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 388
Cdd:COG3914    81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  389 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 468
Cdd:COG3914   157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  469 MKKLvsivaDQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKinvlHKPPYEHPKDLKASEGRLRIGYVSSDF 548
Cdd:COG3914   237 EELL-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----AAPELPPPPNPRDPDRKLRIGYVSADF 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  549 GNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDgTNFRVKVMAEANHFIDLSQIPcNGKAADRIHQDGIHILINMNGYTKG 628
Cdd:COG3914   308 RRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDD-DALTQRLRAAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGHTAG 385

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  629 ARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFigdhanmfphlkkkavidfks 708
Cdd:COG3914   386 NRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL--------------------- 444

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  709 nghiydnrivlngidlkafldslpdvkivkmkCPDSCDNAdgnaalsmPVIPmntiaeavieminrgqiqitingfnisn 788
Cdd:COG3914   445 --------------------------------CYQPNDRA--------PEVA---------------------------- 456

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  789 glattqinnkaatgeEVPrtiivtTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP-AVGEPN 867
Cdd:COG3914   457 ---------------PLP------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARER 515

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  868 IQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 947
Cdd:COG3914   516 LRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGL 595

                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 698431998  948 LELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDLERLYLQMWDHY 1009
Cdd:COG3914   596 PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 173-440 7.57e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 177.61  E-value: 7.57e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  173 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 252
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  253 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 332
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  333 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 412
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                         250       260
                  ....*....|....*....|....*...
gi 698431998  413 DAHSNLASIHKDSGNIPEAIASYRTALK 440
Cdd:COG2956   246 DLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 146-408 1.33e-46

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 168.37  E-value: 1.33e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  146 LGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 220
Cdd:COG2956     9 LGWYFKGLnyllnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  221 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYN 300
Cdd:COG2956    89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  301 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfADA 380
Cdd:COG2956   169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247

                         250       260
                  ....*....|....*....|....*...
gi 698431998  381 YSNMGNTLKEMQDVQGALQCYTRAIQIN 408
Cdd:COG2956   248 LLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 224-483 1.55e-46

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 168.37  E-value: 1.55e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  224 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTAL 303
Cdd:COG2956    24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  304 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 383
Cdd:COG2956   104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  384 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDfPDAYCNLAHCLQivcdwt 463
Cdd:COG2956   184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE------ 256

                         250       260
                  ....*....|....*....|
gi 698431998  464 dYDERMKKLVSIVADQLEKN 483
Cdd:COG2956   257 -RKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
269-449 8.60e-45

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 162.10  E-value: 8.60e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  269 IELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 348
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  349 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 428
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180
                  ....*....|....*....|.
gi 698431998  429 PEAIASYRTALKLKPDFPDAY 449
Cdd:COG0457   161 EEALELLEKLEAAALAALLAA 181
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 108-372 1.02e-44

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 162.98  E-value: 1.02e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  108 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 187
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  188 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 267
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  268 AIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEfAAAH 347
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLL 248

                         250       260
                  ....*....|....*....|....*
gi 698431998  348 SNLASVLQQQGKLQEALMHYKEAIR 372
Cdd:COG2956   249 LALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-304 3.41e-44

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 161.44  E-value: 3.41e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   42 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 121
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  122 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 201
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  202 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCN 281
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                         250       260
                  ....*....|....*....|...
gi 698431998  282 LANALKEKGSVVEAEECYNTALR 304
Cdd:COG2956   251 LADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
201-372 3.41e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 160.56  E-value: 3.41e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  201 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 280
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  281 NLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 360
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170
                  ....*....|..
gi 698431998  361 QEALMHYKEAIR 372
Cdd:COG0457   161 EEALELLEKLEA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
235-441 6.21e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 159.79  E-value: 6.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  235 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLN 314
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  315 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 394
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 698431998  395 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 441
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
167-372 7.45e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 159.40  E-value: 7.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  167 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 246
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  247 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNI 326
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 698431998  327 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 372
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 78-338 1.44e-43

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 159.51  E-value: 1.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   78 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 157
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  158 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 237
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  238 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPThADSLNNLA 317
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                         250       260
                  ....*....|....*....|.
gi 698431998  318 NIKREQGNIEEAVRLYRKALE 338
Cdd:COG2956   253 DLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
133-373 8.06e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 156.71  E-value: 8.06e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  133 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 212
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  213 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 292
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  293 VEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 372
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                  .
gi 698431998  373 I 373
Cdd:COG0457   241 Y 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
303-457 2.87e-42

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 154.78  E-value: 2.87e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  303 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 382
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998  383 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 457
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
65-272 7.96e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 150.93  E-value: 7.96e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   65 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 144
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  145 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 224
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 698431998  225 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 5-448 1.39e-40

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 162.18  E-value: 1.39e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     5 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 84
Cdd:TIGR02917  228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    85 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 164
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   165 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 244
Cdd:TIGR02917  388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   245 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQG 324
Cdd:TIGR02917  468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   325 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 404
Cdd:TIGR02917  548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 698431998   405 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 448
Cdd:TIGR02917  628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 252-485 4.51e-40

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 149.49  E-value: 4.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  252 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 331
Cdd:COG2956    18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  332 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 411
Cdd:COG2956    98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998  412 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 485
Cdd:COG2956   178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-443 6.74e-40

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 159.86  E-value: 6.74e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    14 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 93
Cdd:TIGR02917  305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    94 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLycVRSDLGNLLKALGRLEEAKAcyLKAIET---- 169
Cdd:TIGR02917  385 YLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL--GRADLLLILSYLRSGQFDKA--LAAAKKlekk 460

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   170 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV-LKEARIfDRAVAAYLRALSLSPNHAVVHGNL 248
Cdd:TIGR02917  461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdIQEGNP-DDAIQRFEKVLTIDPKNLRAILAL 539

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   249 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 328
Cdd:TIGR02917  540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   329 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 408
Cdd:TIGR02917  620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699

                          410       420       430
                   ....*....|....*....|....*....|....*
gi 698431998   409 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 443
Cdd:TIGR02917  700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
34-272 1.38e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 138.60  E-value: 1.38e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   34 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 113
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  114 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 193
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 698431998  194 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:COG0457   164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 10-454 1.76e-33

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 139.45  E-value: 1.76e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    10 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLgnVYKERGQ 87
Cdd:TIGR02917  199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPnsPLAHYLKAL--VDFQKKN 276

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    88 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 167
Cdd:TIGR02917  277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPAL 356

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   168 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGnVLK----EARifdRAVAAYLRALSLSPNHAV 243
Cdd:TIGR02917  357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG-ISKlsqgDPS---EAIADLETAAQLDPELGR 432

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   244 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQ 323
Cdd:TIGR02917  433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   324 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 403
Cdd:TIGR02917  513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|.
gi 698431998   404 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 454
Cdd:TIGR02917  593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 34-433 6.08e-33

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 137.91  E-value: 6.08e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    34 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 113
Cdd:TIGR02917  495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   114 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 193
Cdd:TIGR02917  575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   194 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 273
Cdd:TIGR02917  655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   274 HfPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 353
Cdd:TIGR02917  735 S-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL 813

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   354 LQQQgKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 433
Cdd:TIGR02917  814 YLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 2-479 4.46e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 135.21  E-value: 4.46e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     2 LSFQGLAELAhreyqAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV 81
Cdd:TIGR02917  128 LALRGLAYLG-----LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    82 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDlycvrSDLGNLLKAL-----GRL 156
Cdd:TIGR02917  203 LLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALvdfqkKNY 277

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   157 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 236
Cdd:TIGR02917  278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   237 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCP--THADSLN 314
Cdd:TIGR02917  358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPelGRADLLL 437

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   315 NLANIKREQ--------------------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 362
Cdd:TIGR02917  438 ILSYLRSGQfdkalaaakklekkqpdnaslhnllgaiylgkGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   363 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 442
Cdd:TIGR02917  518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 698431998   443 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 479
Cdd:TIGR02917  598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 282-453 7.11e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 120.22  E-value: 7.11e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  282 LANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 361
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  362 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 441
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170
                  ....*....|..
gi 698431998  442 KPDFPDAYCNLA 453
Cdd:COG2956   174 DPDCARALLLLA 185
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 64-453 9.96e-29

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 124.43  E-value: 9.96e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    64 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYI---------------------NLAAA 115
Cdd:TIGR02917   48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypknqvlPLLARAYLlqgkfqqvldelpgktllddeGAAEL 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   116 LVAAGD-------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 188
Cdd:TIGR02917  128 LALRGLaylglgqLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   189 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAvAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 267
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALLKKaPNSPLAHYLKALVDFQKKNYEDARETLQD 286

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   268 AIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 347
Cdd:TIGR02917  287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   348 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA------------- 414
Cdd:TIGR02917  367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAdlllilsylrsgq 446

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   415 ---------------------HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 453
Cdd:TIGR02917  447 fdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 310-445 2.89e-28

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 111.05  E-value: 2.89e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 389
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 698431998  390 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 445
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
15-176 2.48e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 111.64  E-value: 2.48e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   15 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 94
Cdd:COG0457    19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALED 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   95 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 174
Cdd:COG0457    99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178


                  ..
gi 698431998  175 VA 176
Cdd:COG0457   179 LA 180
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 72-453 4.33e-27

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 119.03  E-value: 4.33e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 151
Cdd:TIGR02917   22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   152 ALGRLEEAKAcYLKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 229
Cdd:TIGR02917  102 LQGKFQQVLD-ELPGKTLLDDegAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   230 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTH 309
Cdd:TIGR02917  181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 389
Cdd:TIGR02917  261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   390 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 453
Cdd:TIGR02917  341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 248-375 5.15e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 104.50  E-value: 5.15e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  248 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 327
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 698431998  328 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 375
Cdd:COG4783    90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 145-275 6.08e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 104.12  E-value: 6.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  145 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 224
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 698431998  225 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 275
Cdd:COG4783    89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 208-343 4.18e-25

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 101.81  E-value: 4.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  208 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 287
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 698431998  288 EKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 343
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 277-411 6.59e-25

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 101.42  E-value: 6.59e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  277 DAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 356
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 698431998  357 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 411
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-240 2.18e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 109.70  E-value: 2.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    1 MLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 80
Cdd:COG3914    75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   81 VYKERGQLQEAIEHYRHALRLKPDFIDGYINlaaalvaagdmegavqayvsalqynpdlycvrsdLGNLLKALGRLEEAK 160
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELDPDNAEALNN----------------------------------LGNALQDLGRLEEAI 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  161 ACYLKAIETQPNFAVAWSNL------GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN---LGNVLKEARIFDRAVA-A 230
Cdd:COG3914   201 AAYRRALELDPDNADAHSNLlfalrqACDWEVYDRFEELLAALARGPSELSPFALLYLPdddPAELLALARAWAQLVAaA 280

                         250
                  ....*....|
gi 698431998  231 YLRALSLSPN 240
Cdd:COG3914   281 AAPELPPPPN 290
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 3-264 3.91e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 109.40  E-value: 3.91e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     3 SFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 82
Cdd:TIGR02917  634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    83 KERGQLQEAIEHYRHALRLKPDfIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 162
Cdd:TIGR02917  714 LRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   163 YLKAIETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALSLSP 239
Cdd:TIGR02917  793 YQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAP 868

                          250       260
                   ....*....|....*....|....*
gi 698431998   240 NHAVVHGNLACVYYEQGLIDLAIDT 264
Cdd:TIGR02917  869 EAAAIRYHLALALLATGRKAEARKE 893
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 72-207 8.51e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 97.96  E-value: 8.51e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 151
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 698431998  152 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 207
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
109-338 7.65e-23

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 98.06  E-value: 7.65e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  109 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGC 182
Cdd:COG4785     2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  183 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 262
Cdd:COG4785    82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 698431998  263 DTYRRAIELQPHFPDAYCNLANALKEKGsvveaeecYNTALRLCPTHADSLNNLanikreQGNIEEAVRLYRKALE 338
Cdd:COG4785   162 ADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYLL------QGDTEEARELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
196-372 1.23e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 97.68  E-value: 1.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  196 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLsPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 275
Cdd:COG4785    28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  276 PDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL----- 350
Cdd:COG4785   107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLylaer 186

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 698431998  351 ---------------ASVLQQQGKLQEALMHYKEAIR 372
Cdd:COG4785   187 kldpekalallledwATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 226-346 3.09e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 93.15  E-value: 3.09e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  226 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRL 305
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 698431998  306 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 346
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 261-381 3.98e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 93.15  E-value: 3.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  261 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 340
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 698431998  341 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 381
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 174-309 4.56e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 93.33  E-value: 4.56e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  174 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 253
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 698431998  254 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTH 309
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
278-481 6.28e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 95.37  E-value: 6.28e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  278 AYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLA 351
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  352 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 431
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 698431998  432 IASYRTALKLKPDFPDAYCNLAHCLQIVcdwtDYDERMKKLVSIVADQLE 481
Cdd:COG4785   161 IADLEKALELDPNDPERALWLYLAERKL----DPEKALALLLEDWATAYL 206
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 294-421 7.32e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 92.38  E-value: 7.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  294 EAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 373
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 698431998  374 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 421
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 328-449 9.70e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 91.99  E-value: 9.70e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  328 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 407
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 698431998  408 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 449
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-138 1.39e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.79  E-value: 1.39e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 86
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 698431998   87 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 138
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 193-311 2.66e-21

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 90.84  E-value: 2.66e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  193 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 698431998  273 PHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHAD 311
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 72-470 4.32e-21

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 98.90  E-value: 4.32e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIdGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 151
Cdd:TIGR00990  127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   152 ALGRLEEA---------------------------KACYLKAIE----TQPNFAVAWS--NLGCVFNAQgeiwLAIHHFE 198
Cdd:TIGR00990  206 GLGKYADAlldltasciidgfrneqsaqaverllkKFAESKAKEiletKPENLPSVTFvgNYLQSFRPK----PRPAGLE 281

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   199 KAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALS---LSPNHAVVH---GNLACVY--YEQGLIDLaidtyRR 267
Cdd:TIGR00990  282 DSNELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDlgkLGEKEAIALnlrGTFKCLKgkHLEALADL-----SK 356

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   268 AIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 347
Cdd:TIGR00990  357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   348 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-- 425
Cdd:TIGR00990  437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAla 516

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 698431998   426 -----GNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMK 470
Cdd:TIGR00990  517 lfqwkQDFIEAENLCEKALIIDPECDIAVATMA---QLLLQQGDVDEALK 563
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 344-479 8.34e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.48  E-value: 8.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  344 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 423
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 698431998  424 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 479
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 40-173 1.05e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.10  E-value: 1.05e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   40 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 119
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 698431998  120 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 173
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
67-229 1.14e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.90  E-value: 1.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   67 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 146
Cdd:COG4785    68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  147 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLgcvFNAQGEIwlaihHFEKAV-TLDPNFLDAYINLGNVLKEARIFD 225
Cdd:COG4785   148 GIALYYLGRYELAIADLEKALELDPNDPERALWL---YLAERKL-----DPEKALaLLLEDWATAYLLQGDTEEARELFK 219


                  ....
gi 698431998  226 RAVA 229
Cdd:COG4785   220 LALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 64-174 1.14e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 88.91  E-value: 1.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   64 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 143
Cdd:COG4235     9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                          90       100       110
                  ....*....|....*....|....*....|.
gi 698431998  144 SDLGNLLKALGRLEEAKACYLKAIETQPNFA 174
Cdd:COG4235    89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 5-363 7.33e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.54  E-value: 7.33e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     5 QGLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 84
Cdd:TIGR02917  537 LALAGLYLRT---GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    85 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYl 164
Cdd:TIGR02917  614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA- 692

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   165 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----------------------FLDAYIN-------- 213
Cdd:TIGR02917  693 KSLQKQhPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaiklhrallasgntaeavkTLEAWLKthpndavl 772

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   214 ---LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDlAIDTYRRAIELQPHFPdaycnlanalkekg 290
Cdd:TIGR02917  773 rtaLAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIP-------------- 837

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 698431998   291 svveaeecyntalrlcpthaDSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 363
Cdd:TIGR02917  838 --------------------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 158-279 9.89e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 86.21  E-value: 9.89e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  158 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 237
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 698431998  238 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 279
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
251-342 2.60e-19

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 83.68  E-value: 2.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  251 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEEcYNTALRLCPTHADSLNNLANIKREQGNIEEAV 330
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 698431998  331 RLYRKALEVFPE 342
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 224-375 5.62e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 85.01  E-value: 5.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  224 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTAL 303
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 698431998  304 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 375
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 203-341 6.32e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 84.63  E-value: 6.32e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  203 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 282
Cdd:COG5010    15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 698431998  283 ANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 341
Cdd:COG5010    95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
319-410 1.06e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 81.76  E-value: 1.06e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  319 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMhYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 398
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 698431998  399 QCYTRAIQINPA 410
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 87-239 3.02e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 82.70  E-value: 3.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   87 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 166
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 698431998  167 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 239
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 90-206 4.42e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.59  E-value: 4.42e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   90 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 169
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 698431998  170 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 206
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
353-444 6.33e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 79.83  E-value: 6.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  353 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQcYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 432
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 698431998  433 ASYRTALKLKPD 444
Cdd:COG3063    80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 260-409 1.22e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 81.16  E-value: 1.22e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  260 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 339
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  340 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 409
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 327-443 1.79e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.77  E-value: 1.79e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  327 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 406
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 698431998  407 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 443
Cdd:COG5010   117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 149-273 1.95e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.39  E-value: 1.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  149 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 228
Cdd:COG5010    29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 698431998  229 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 273
Cdd:COG5010   109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
183-273 3.38e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 77.52  E-value: 3.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  183 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVaAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 262
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 698431998  263 DTYRRAIELQP 273
Cdd:COG3063    80 AYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 53-171 8.21e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 78.85  E-value: 8.21e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   53 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 132
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 698431998  133 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 171
Cdd:COG5010   115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
203-440 9.63e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 80.34  E-value: 9.63e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  203 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELqPHFPDAYCNL 282
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  283 ANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 362
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 698431998  363 ALMHYKEAIRISPTFADAYSNMGNTLKEmQDVQGALQCYTRAIQINpafadahsnlasiHKDSGNIPEAIASYRTALK 440
Cdd:COG4785   160 AIADLEKALELDPNDPERALWLYLAERK-LDPEKALALLLEDWATA-------------YLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 125-242 9.64e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 77.74  E-value: 9.64e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  125 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 204
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 698431998  205 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 242
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
81-172 3.23e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.82  E-value: 3.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   81 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQaYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 160
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 698431998  161 ACYLKAIETQPN 172
Cdd:COG3063    80 AYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
33-201 3.61e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.80  E-value: 3.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   33 QEPDNTGVLLLLSSIHFQCRRLDRS-AHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 111
Cdd:COG4785    68 ALPDLAQLYYERGVAYDSLGDYDLAiADFDQ-ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  112 LAAALVAAGDMEGAVQAYVSALQYNPDLyCVRSDLGNLLKALGRLEEAKACYLKAIETQpnfavawsnlgcvFNAQGEIW 191
Cdd:COG4785   147 RGIALYYLGRYELAIADLEKALELDPND-PERALWLYLAERKLDPEKALALLLEDWATA-------------YLLQGDTE 212

                         170
                  ....*....|
gi 698431998  192 LAIHHFEKAV 201
Cdd:COG4785   213 EARELFKLAL 222
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 249-477 6.03e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 82.82  E-value: 6.03e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   249 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 328
Cdd:TIGR02917   29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   329 AVRLYRKA-LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 407
Cdd:TIGR02917  109 VLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   408 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMKKLVSIVA 477
Cdd:TIGR02917  189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA---TILIEAGEFEEAEKHADALLK 255
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
149-240 6.20e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.05  E-value: 6.20e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  149 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIhHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 228
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 698431998  229 AAYLRALSLSPN 240
Cdd:COG3063    80 AYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 362-453 7.90e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 75.04  E-value: 7.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  362 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 441
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90
                  ....*....|..
gi 698431998  442 KPDFPDAYCNLA 453
Cdd:COG4235    81 DPDNPEALYLLG 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 53-205 1.12e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 75.38  E-value: 1.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   53 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 132
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 698431998  133 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 205
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 242-448 2.83e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 76.22  E-value: 2.83e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   242 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYcnlanalkekgsvveaeecyntalrlcpthadslNNLANIKR 321
Cdd:TIGR02521   31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAY----------------------------------LALALYYQ 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   322 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRiSPTF---ADAYSNMGNTLKEMQDVQGAL 398
Cdd:TIGR02521   77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYpqpARSLENAGLCALKAGDFDKAE 155

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 698431998   399 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 448
Cdd:TIGR02521  156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 197-495 3.90e-15

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 78.71  E-value: 3.90e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  197 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 276
Cdd:NF033758   75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  277 daycNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---------- 346
Cdd:NF033758  125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  347 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 402
Cdd:NF033758  201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  403 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLE 481
Cdd:NF033758  281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360

                         330
                  ....*....|....
gi 698431998  482 knrLPSVHPHHSML 495
Cdd:NF033758  361 ---LNAEAPVFGLL 371
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 322-454 4.50e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 75.84  E-value: 4.50e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   322 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 401
Cdd:TIGR02521   43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   402 TRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 454
Cdd:TIGR02521  123 EQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 109-273 4.72e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 75.84  E-value: 4.72e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   109 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 188
Cdd:TIGR02521   34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   189 EIWLAIHHFEKAVtLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI---DLAI 262
Cdd:TIGR02521  114 KYEQAMQQFEQAI-EDPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYkdaRAYL 192

                          170
                   ....*....|.
gi 698431998   263 DTYRRAIELQP 273
Cdd:TIGR02521  193 ERYQQTYNQTA 203
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 32-138 6.04e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 72.35  E-value: 6.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   32 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 111
Cdd:COG4235    11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                          90       100
                  ....*....|....*....|....*..
gi 698431998  112 LAAALVAAGDMEGAVQAYVSALQYNPD 138
Cdd:COG4235    91 LGLAAFQQGDYAEAIAAWQKLLALLPA 117
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 72-243 2.14e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 73.91  E-value: 2.14e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 151
Cdd:TIGR02521   31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   152 ALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 229
Cdd:TIGR02521  111 QQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190

                          170
                   ....*....|....
gi 698431998   230 AYLRALSLSPNHAV 243
Cdd:TIGR02521  191 YLERYQQTYNQTAE 204
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 66-376 2.52e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 77.33  E-value: 2.52e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    66 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCV 142
Cdd:TIGR00990  325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNsedPDIYYH 404

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   143 RSDLgNLLKAlgrleeakacylkaietqpNFAVAWSNlgcvfnaqgeiwlaihhFEKAVTLDPNFLDAYINLGnvlkear 222
Cdd:TIGR00990  405 RAQL-HFIKG-------------------EFAQAGKD-----------------YQKSIDLDPDFIFSHIQLG------- 440

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   223 ifdravaaylralslspnhavvhgnlaCVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTA 302
Cdd:TIGR00990  441 ---------------------------VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   303 LRL-------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 375
Cdd:TIGR00990  494 IELeketkpmYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573


                   .
gi 698431998   376 T 376
Cdd:TIGR00990  574 T 574
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 7-137 2.92e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 2.92e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 86
Cdd:COG5010    23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 698431998   87 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 137
Cdd:COG5010   103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
47-140 9.34e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.89  E-value: 9.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   47 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEhYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 126
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....
gi 698431998  127 QAYVSALQYNPDLY 140
Cdd:COG3063    80 AYLERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
115-209 1.69e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.12  E-value: 1.69e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  115 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAcYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 194
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 698431998  195 HHFEKAVTLDPNFLD 209
Cdd:COG3063    80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 331-456 5.11e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 67.68  E-value: 5.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  331 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 410
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 698431998  411 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 456
Cdd:COG5010    87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
15-104 1.32e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.42  E-value: 1.32e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   15 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 94
Cdd:COG3063     3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                          90
                  ....*....|
gi 698431998   95 YRHALRLKPD 104
Cdd:COG3063    82 LERALELDPS 91
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 276-375 1.71e-12

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 68.73  E-value: 1.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  276 PDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 355
Cdd:NF033920  156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                          90       100
                  ....*....|....*....|
gi 698431998  356 QQGKLQEALMHYKEAIRISP 375
Cdd:NF033920  236 AQGCTAQARAAAECALALAP 255
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 5-119 3.97e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.26  E-value: 3.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    5 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 84
Cdd:COG4235    18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 698431998   85 RGQLQEAIEHYRHALRLKPDFIDGYInLAAALVAA 119
Cdd:COG4235    98 QGDYAEAIAAWQKLLALLPADAPARL-LEASIAEA 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
390-481 4.69e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.88  E-value: 4.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  390 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAsYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 469
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82

                          90
                  ....*....|..
gi 698431998  470 KKLVSIVADQLE 481
Cdd:COG3063    83 ERALELDPSALR 94
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 150-340 8.05e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 67.27  E-value: 8.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  150 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVL--KEA-RIFD 225
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSggEEAlQYYE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  226 RAVAAYLRALslspnhavvhgnlacvyyeQGLIDLAIDTYRRAIELQPHFPDAYCNLA-----NALKEKGSVVEAEECYN 300
Cdd:cd24142    90 KGIEILEEEL-------------------QALQAASAEAEEEAEELKRKLSSALCALAeiymtDLCDEPDAEQRCEELIT 150

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 698431998  301 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 340
Cdd:cd24142   151 KALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-105 9.97e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 9.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 86
Cdd:COG4783    41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                          90
                  ....*....|....*....
gi 698431998   87 QLQEAIEHYRHALRLKPDF 105
Cdd:COG4783   121 RPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
310-373 1.38e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.25  E-value: 1.38e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 373
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 157-447 2.42e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 67.70  E-value: 2.42e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   157 EEAKACYLKAI---ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 233
Cdd:TIGR00990  311 EEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   234 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSL 313
Cdd:TIGR00990  391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   314 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE-------AIRISPTFADAYSNMGN 386
Cdd:TIGR00990  471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEaenlcekALIIDPECDIAVATMAQ 550

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   387 TLKEMQDVQGALQCYTRAiqinpafadahsnlASIHKDSGNIPEAIA---SYRTALKLKPDFPD 447
Cdd:TIGR00990  551 LLLQQGDVDEALKLFERA--------------AELARTEGELVQAISyaeATRTQIQVQEDYPV 600
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 252-468 2.43e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 66.11  E-value: 2.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  252 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTH-ADSLNNLANIkrEQGniEEAV 330
Cdd:cd24142    10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  331 RLYRKALEVfpefaaahsnLASVLQQQGKLQEALMHYKEAIRisPTFADAYSNMGntlkE--MQDV-------QGALQCY 401
Cdd:cd24142    86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELK--RKLSSALCALA----EiyMTDLcdepdaeQRCEELI 149

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 698431998  402 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYDER 468
Cdd:cd24142   150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 311-503 5.62e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 64.96  E-value: 5.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  311 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGntlk 389
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG---- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  390 emQDVQG--ALQCYTRAIQI--------NPAFADAHSNLASIHKDsgnIPEAIAS----YRT------------------ 437
Cdd:cd24142    77 --QLSGGeeALQYYEKGIEIleeelqalQAASAEAEEEAEELKRK---LSSALCAlaeiYMTdlcdepdaeqrceelitk 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998  438 ALKLKPDFPDAYCNLAHcLQIV-CDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFR 503
Cdd:cd24142   152 ALELDPTNPEALQTLAS-LRISqQRPDEAKEALRRSLELWKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 209-374 9.01e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 64.19  E-value: 9.01e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  209 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK 287
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  288 EKgsvvEAEECYNTALRLCPTHADSLNNLAniKREQGNIEEAVR-----------LY------------------RKALE 338
Cdd:cd24142    81 GE----EALQYYEKGIEILEEELQALQAAS--AEAEEEAEELKRklssalcalaeIYmtdlcdepdaeqrceeliTKALE 154

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 698431998  339 VFPEFAAAHSNLASVLQQQGKLQEAlmhyKEAIRIS 374
Cdd:cd24142   155 LDPTNPEALQTLASLRISQQRPDEA----KEALRRS 186
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 84-445 1.77e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.49  E-value: 1.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   84 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCvRSDLGNLLKAlGRleeakacY 163
Cdd:PRK11447  281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKV-NR-------Y 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  164 LKAIEtQPNFAVAWSNLGcvfnaqgeiwLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 242
Cdd:PRK11447  352 WLLIQ-QGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTN 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  243 VVHGnLACVYYEQG-------LIDL------AIDTYRRAIELqphfpDAYCNLANALKEKGSVVEAEECYNTALRLCPTH 309
Cdd:PRK11447  421 AVRG-LANLYRQQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------EFAAAHSN--------------------- 349
Cdd:PRK11447  495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsd 574

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  350 ----LASVLQQQGKLQEA--LMHYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIH 422
Cdd:PRK11447  575 qvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVD 647

                         410       420
                  ....*....|....*....|...
gi 698431998  423 KDSGNIPEAiasyRTALKLKPDF 445
Cdd:PRK11447  648 IAQGDLAAA----RAQLAKLPAT 666
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 6-376 2.16e-10

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 65.10  E-value: 2.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    6 GLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSN 77
Cdd:PRK11447  390 GLGDVAMAR---KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQrrsiddieRSLQNDRLAQ 466

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   78 LGNVYKERGQLQEAIEHYRHALRLKPDfiDGYIN--LAAALVAAGDMEGAVQAYVSALQYNPdlycvrsdlgnllkalGR 155
Cdd:PRK11447  467 QAEALENQGKWAQAAELQRQRLALDPG--SVWLTyrLAQDLRQAGQRSQADALMRRLAQQKP----------------ND 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  156 LEE--AKACYLKAIEtQPNFAVAwsNLGCVFNAQgeiWLA-IHHFEKAVTLDpNFLDAYINLGNVLKEArifdrAVAAYL 232
Cdd:PRK11447  529 PEQvyAYGLYLSGSD-RDRAALA--HLNTLPRAQ---WNSnIQELAQRLQSD-QVLETANRLRDSGKEA-----EAEALL 596

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  233 RALSLSPNHAVVhgnLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEEcyntALRLCPTHA-D 311
Cdd:PRK11447  597 RQQPPSTRIDLT---LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA----QLAKLPATAnD 669

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998  312 SLN---NLANIKREQGNIEEAVRLYR------KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPT 376
Cdd:PRK11447  670 SLNtqrRVALAWAALGDTAAAQRTFNrlipqaKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMvasGITPT 746
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 64-137 1.03e-09

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 60.26  E-value: 1.03e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   64 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 137
Cdd:NF033920  182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-161 2.89e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 2.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 86
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   87 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 161
Cdd:COG0457   159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 252-346 2.92e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 55.77  E-value: 2.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  252 YYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTH---ADSLNNLANIKREQGN 325
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                          90       100
                  ....*....|....*....|.
gi 698431998  326 IEEAVRLYRKALEVFPEFAAA 346
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
278-342 5.04e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.93  E-value: 5.04e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 698431998   278 AYCNLANALKEKGSVVEAEECYNTALRLC-----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 342
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 15-364 1.00e-08

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 59.55  E-value: 1.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   15 YQAGDFEAAERHC---MQLWRQ--EPDNTGVLLL---LSSIHFQ------CRRLDRSA-------------HFSTLAikq 67
Cdd:NF040586  403 YLRGDYESARDLAeraLERWRErlGPDDRQTLRLrfhLANALRSlgryeeARELDEDTlerqrrvlglgedHPHTLM--- 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   68 npllaeAYSNLGNVYKERGQLQEAIEHYRHALR-----LKPDfiDGYI-----NLAAALVAAGDmegavqaYVSALQYNP 137
Cdd:NF040586  480 ------TAGGLGADLRALGRFREALELDEETLErhrrvFGED--HPRTlraanNLAVSLRLLGD-------YREALELDR 544

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  138 DLYCVRSDLGNllkalgrleeakacylkaiETQPNFAVAWSNLGCVFNAQGEiwlaihhFEKAVTLdpnfldayinlgnv 217
Cdd:NF040586  545 EVLRRRRRVLG-------------------PDHPRTLLSANNLARDLRELGR-------YAEALDL-------------- 584

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  218 LKEARifdravaAYLRALSLSPNHAVVHG---NLA-----CVYYEQGLiDLAIDTYRRAIELQ-PHFPD---AYCNLANA 285
Cdd:NF040586  585 LEEAL-------ERYREVLGGPDHPDTLRaakSLAvalrrAGRLEEAL-ELAEDTYERYRRRFgPDHPDtlaAALSLAND 656

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  286 LKEKG----SVVEAEECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAh 347
Cdd:NF040586  657 LRALGdadeARELAREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAEAALEGLRErlgpdhpytlAAAV- 735

                         410
                  ....*....|....*..
gi 698431998  348 sNLASVLQQQGKLQEAL 364
Cdd:NF040586  736 -NLANDLAALGDLDAAL 751
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 397-456 2.04e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.86  E-value: 2.04e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  397 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 456
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
TPR_1 pfam00515
Tetratricopeptide repeat;
72-105 2.50e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.50  E-value: 2.50e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 105
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 7-206 3.13e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 56.46  E-value: 3.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAhreYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC----------RRLDRSAHFSTLAIKQnpLLAEAYS 76
Cdd:COG3071    91 RAELL---LDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLgdweellellPALRKHKALSAEEAQA--LERRAYL 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   77 NLgnvYKERGQLQEAIEHYRHAL----RLKPDFIDGYinlAAALVAAGDMEGAVQAYVSALQYNPD-----LY--CVRSD 145
Cdd:COG3071   166 GL---LRQAARDAEALKALWKALpraeRRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDprlvrLYgrLQGGD 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  146 LGNLLK-----------------ALGRL-------EEAKACYLKAIETQPNfAVAWSNLGCVFNAQGEIWLAIHHFEKAV 201
Cdd:COG3071   240 PAKQLKraekwlkkhpndpdlllALGRLclrnqlwGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKAL 318


                  ....*
gi 698431998  202 TLDPN 206
Cdd:COG3071   319 ALALG 323
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 322-406 3.15e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.69  E-value: 3.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  322 EQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQ 395
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYD 84

                          90
                  ....*....|.
gi 698431998  396 GALQCYTRAIQ 406
Cdd:COG1729    85 KARATLEELIK 95
TPR_12 pfam13424
Tetratricopeptide repeat;
342-410 3.50e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.62  E-value: 3.50e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998   342 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 410
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_11 pfam13414
TPR repeat;
79-120 3.53e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 50.16  E-value: 3.53e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 698431998    79 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 120
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
251-290 3.59e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 50.16  E-value: 3.59e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 698431998   251 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 290
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 72-105 9.56e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 48.98  E-value: 9.56e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998     72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 105
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 186-364 1.11e-07

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 55.01  E-value: 1.11e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   186 AQGEIWLAIHHFEKAVTLDP--NFLD---AYINLG--NVLKEARifDRAVAAYLRALSLSPNHAVVHGN------LACVY 252
Cdd:pfam17874   13 SKGDAERALELAEQALALLPedDLLArglATFVLGeaYLCLGDL--DAALQAMREAEALARRADSPHVTlwallqQGEIL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   253 YEQGLIDLAIDTYRRAIELQP-----HFP---DAYCNLANALKEKGSVVEAEECYNTALRLC---PTHA--DSLNNLANI 319
Cdd:pfam17874   91 RAQGRLHQALETYQQALQLARdhglqHLPlhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGrqwEPDAavDAYVLLARI 170

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 698431998   320 KREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASV----LQQQGKLQEAL 364
Cdd:pfam17874  171 ALAQGELEEALTLLRRAELLarqSFFHVDWLANAERVrvrlWLARGDLRAAV 222
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 285-375 2.01e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.38  E-value: 2.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  285 ALKEKGSVVEAEECYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQG 358
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                          90
                  ....*....|....*..
gi 698431998  359 KLQEALMHYKEAIRISP 375
Cdd:COG1729    82 DYDKARATLEELIKKYP 98
TPR_11 pfam13414
TPR repeat;
317-358 4.00e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.47  E-value: 4.00e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 698431998   317 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 358
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 315-375 4.30e-07

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 48.10  E-value: 4.30e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   315 NLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 375
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_11 pfam13414
TPR repeat;
356-392 6.80e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.70  E-value: 6.80e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 698431998   356 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 392
Cdd:pfam13414    6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
421-454 7.35e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.70  E-value: 7.35e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   421 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 454
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 249-341 7.39e-07

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 51.78  E-value: 7.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  249 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 327
Cdd:NF033920  162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                          90
                  ....*....|....
gi 698431998  328 EAVRLYRKALEVFP 341
Cdd:NF033920  242 QARAAAECALALAP 255
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 356-448 1.15e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.06  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  356 QQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIP 429
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                          90
                  ....*....|....*....
gi 698431998  430 EAIASYRTALKLKPDFPDA 448
Cdd:COG1729    85 KARATLEELIKKYPDSEAA 103
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 72-104 1.17e-06

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 45.59  E-value: 1.17e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 104
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_12 pfam13424
Tetratricopeptide repeat;
70-134 1.44e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 1.44e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 698431998    70 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 134
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 84-176 1.97e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 1.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   84 ERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-------LYcvrsDLGNLLKAL 153
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkapdaLL----KLGLSYLEL 80

                          90       100
                  ....*....|....*....|...
gi 698431998  154 GRLEEAKACYLKAIETQPNFAVA 176
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAA 103
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 11-271 4.20e-06

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 50.00  E-value: 4.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    11 AHREYQAGDFEAAERHCMQ-LWRQEPDNTGVLLLLSSIH---FQCR-RLDRS-AHFS---TLAIKQNPLLAEAYS--NLG 79
Cdd:pfam17874    8 AQLAISKGDAERALELAEQaLALLPEDDLLARGLATFVLgeaYLCLgDLDAAlQAMReaeALARRADSPHVTLWAllQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    80 NVYKERGQLQEAIEHYRHALRLKPD------FIDG--YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 151
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDhglqhlPLHGflLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAAVDAYVLL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   152 -----ALGRLEEAKAcYLKAIE---TQPNFAVAWsnLGCVFNAQGEIWLA----------IHHFEKAVTLDPNFLDA-YI 212
Cdd:pfam17874  168 arialAQGELEEALT-LLRRAEllaRQSFFHVDW--LANAERVRVRLWLArgdlraavrwLRAAEPPSDADNHFLEReLR 244

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   213 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN-----LACVYYEQGLIDLAIDTYRRAIEL 271
Cdd:pfam17874  245 NLARVLLALGRFDDALSLLERLQNLAeQLGRVRSLIenlilQALALLALGRPDEALQALLDALSL 309
TPR_11 pfam13414
TPR repeat;
147-188 5.08e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.00  E-value: 5.08e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 698431998   147 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 188
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
75-173 5.86e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 48.72  E-value: 5.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   75 YSNLGNVYKERGQLQEAIEHYRHAL-RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLycvRSDLGNLLKA- 152
Cdd:COG4700    92 RVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDF---KSSDAHLLYAr 168

                          90       100
                  ....*....|....*....|....*
gi 698431998  153 ----LGRLEEAKACYLKAIETQPNF 173
Cdd:COG4700   169 aleaLGDLEAAEAELEALARRYSGP 193
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 67-138 7.15e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 7.15e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   67 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---DGYINLAAALVAAGDMEGAVQAYVSALQYNPD 138
Cdd:COG1729    25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPD 99
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 17-355 7.77e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 49.92  E-value: 7.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   17 AGDFEAAERHCMQLWRQEpdntgvllllssihfqcRRLDRSAHFSTLAikqnpllaeAYSNLGNVYKERGQLQEAIEHYR 96
Cdd:NF040586  533 LGDYREALELDREVLRRR-----------------RRVLGPDHPRTLL---------SANNLARDLRELGRYAEALDLLE 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   97 HALR------LKPDFIDGYI---NLAAALVAAGDMEGA-------VQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEA 159
Cdd:NF040586  587 EALEryrevlGGPDHPDTLRaakSLAVALRRAGRLEEAlelaedtYERYRRRFGpDHPDTLAAALSLANDLRALGDADEA 666

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  160 kacyLKAIETqpnfavawsnlgcvfnaqgeiwlAIHHFEKAVTLD-PNFLDAYINLGNVLK------EARIFDRAVAAYL 232
Cdd:NF040586  667 ----RELARE-----------------------VLDRYRRVLGEDhPFTLACRNNLAVLLRalgdpeEARELAEAALEGL 719

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  233 RAlSLSPNH------AVvhgNLACVYYEQGLIDLAIDTYRRAielqphfpdaycnlanalkekgsvvEAEECYNTALRLC 306
Cdd:NF040586  720 RE-RLGPDHpytlaaAV---NLANDLAALGDLDAALGEEALE-------------------------RLRRLLGEDLRAG 770

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 698431998  307 PTHADSL---NNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQ 355
Cdd:NF040586  771 PDHPDTLacaANLALDLRATGRTEEAEELRADTLARLRRvLGPDHPDTVAARE 823
TPR_1 pfam00515
Tetratricopeptide repeat;
378-409 1.17e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.17e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 698431998   378 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 409
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_11 pfam13414
TPR repeat;
385-426 1.22e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.23  E-value: 1.22e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 698431998   385 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 426
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 193-409 1.24e-05

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 48.65  E-value: 1.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  193 AIHHFEKAVTLDPNFLDAYINLGN-------------------------------VLKE-------ARIFDRAVAAYLRa 234
Cdd:PRK11788   54 AIDLFIEMLKVDPETVELHLALGNlfrrrgevdrairihqnllsrpdltreqrllALQElgqdylkAGLLDRAEELFLQ- 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  235 LSLSPNHAVVhgnlAcvyyEQGLIDL---------AIDTYRRAIELQP--------HFpdaYCNLANALKEKGSVVEAEE 297
Cdd:PRK11788  133 LVDEGDFAEG----A----LQQLLEIyqqekdwqkAIDVAERLEKLGGdslrveiaHF---YCELAQQALARGDLDAARA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  298 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRISPt 376
Cdd:PRK11788  202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSeVLPKLMECYQALGDEAEGLEFLRRALEEYP- 280

                         250       260       270
                  ....*....|....*....|....*....|...
gi 698431998  377 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 409
Cdd:PRK11788  281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 193-447 1.25e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 49.31  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  193 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----------------AVVHGNLAcvyYEQ 255
Cdd:PRK11447  288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkwesllkvnrywlLIQQGDAA---LKA 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  256 GLIDLAIDTYRRAIELQPHfpDAYC--NLANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQGnieeavrly 333
Cdd:PRK11447  365 NNLAQAERLYQQARQVDNT--DSYAvlGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS--------- 433

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  334 rkalevfPEFAAAHSNLASVLQQQ--GKLQEALMHykeairisptfaDAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 411
Cdd:PRK11447  434 -------PEKALAFIASLSASQRRsiDDIERSLQN------------DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 698431998  412 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 447
Cdd:PRK11447  495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530
TPR_19 pfam14559
Tetratricopeptide repeat;
119-178 1.81e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 43.34  E-value: 1.81e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   119 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 178
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 220-491 1.93e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 48.76  E-value: 1.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  220 EARIFDRAVAAYLRALsLSPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLANA 285
Cdd:NF040586  496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLARD 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  286 LKEKGSVVEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVRL----YRKALEVF----PEFAAAHS 348
Cdd:NF040586  572 LRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAAL 651

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  349 NLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH--- 415
Cdd:NF040586  652 SLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpyt 730

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  416 ----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVADQ 479
Cdd:NF040586  731 laaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLAR 806

                         330
                  ....*....|..
gi 698431998  480 LEKnRLPSVHPH 491
Cdd:NF040586  807 LRR-VLGPDHPD 817
TPR_1 pfam00515
Tetratricopeptide repeat;
174-207 2.01e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 2.01e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   174 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 207
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
310-343 2.01e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 2.01e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 343
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_10 pfam13374
Tetratricopeptide repeat;
310-339 2.04e-05

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 42.49  E-value: 2.04e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEV 339
Cdd:pfam13374    2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 187-278 2.34e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.60  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  187 QGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG---NLACVYYEQGLIDL 260
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDK 85

                          90
                  ....*....|....*...
gi 698431998  261 AIDTYRRAIELQPHFPDA 278
Cdd:COG1729    86 ARATLEELIKKYPDSEAA 103
COG3899 COG3899
Predicted ATPase [General function prediction only];
321-448 2.51e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 48.70  E-value: 2.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  321 REQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRI-------------SPTFADAY 381
Cdd:COG3899   716 LARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAY 795

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 698431998  382 SNMGNTLkeMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 448
Cdd:COG3899   796 ANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 310-343 2.60e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.60e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 343
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 392-485 2.76e-05

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 48.37  E-value: 2.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  392 QDVQGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLqivCDWTDYDERMKK 471
Cdd:PRK09782  590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL---WDSGDIAQSREM 665

                          90
                  ....*....|....
gi 698431998  472 LVSIVADQLEKNRL 485
Cdd:PRK09782  666 LERAHKGLPDDPAL 679
TPR_12 pfam13424
Tetratricopeptide repeat;
210-271 2.88e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.88e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   210 AYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 271
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 86-219 3.24e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.43  E-value: 3.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   86 GQLQEAIEHYRHALRLKPDFID-GYI--NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAc 162
Cdd:PRK02603   49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998  163 ylkaietQPNFAVAWsnlgcvFNAQGEIWlaihhfEKAVTLDPNfldAYINLGNVLK 219
Cdd:PRK02603  128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
COG3899 COG3899
Predicted ATPase [General function prediction only];
71-306 3.31e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.93  E-value: 3.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   71 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 144
Cdd:COG3899   704 AARLLLRAARRALARGAYAEALRYLERALELLPPDPEEeyrlalLLELAEALYLAGRFEEAEALLERALAARALAALAAL 783

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  145 DLGNLLKA-----------LGRLEEAKACYLKAIE------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 207
Cdd:COG3899   784 RHGNPPASarayanlglllLGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  208 LDAyinLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 287
Cdd:COG3899   864 GDA---ALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAA 940

                         250
                  ....*....|....*....
gi 698431998  288 EKGSVVEAEECYNTALRLC 306
Cdd:COG3899   941 AAAALAAAAAAAALAAALA 959
TPR_1 pfam00515
Tetratricopeptide repeat;
344-377 3.52e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.64  E-value: 3.52e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   344 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 377
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 70-271 3.72e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 46.85  E-value: 3.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   70 LLAEAysnlgNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------LYcvr 143
Cdd:cd24142     3 LLEKA-----EELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekyLY--- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  144 sdLGNLLKAlgrlEEAKACYLKAIE-------TQPNFAVAWSNLGCVFNAQ--------GEIWLAIHHFEKavtldpnfl 208
Cdd:cd24142    75 --LGQLSGG----EEALQYYEKGIEileeelqALQAASAEAEEEAEELKRKlssalcalAEIYMTDLCDEP--------- 139

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998  209 DAyinlgnvlkEARifdraVAAYL-RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 271
Cdd:cd24142   140 DA---------EQR-----CEELItKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
TPR_1 pfam00515
Tetratricopeptide repeat;
242-275 3.85e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.64  E-value: 3.85e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   242 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 275
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_8 pfam13181
Tetratricopeptide repeat;
72-104 4.07e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 41.23  E-value: 4.07e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998    72 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 104
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
7-104 4.10e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 4.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     7 LAELAHREYQAGDFEAAERH---CMQLWRQEPDntgvllllssihfqcrrldrsahfstlaiKQNPLLAEAYSNLGNVYK 83
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELlekALEIARRLLG-----------------------------PDHPLTATTLLNLGRLYL 56

                           90       100
                   ....*....|....*....|.
gi 698431998    84 ERGQLQEAIEHYRHALRLKPD 104
Cdd:pfam13424   57 ELGRYEEALELLERALALAEK 77
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 247-374 5.08e-05

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 46.57  E-value: 5.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  247 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLanalkekGSVV----EAEECYNTALRLCPTHADSLNNLANIKRE 322
Cdd:cd24145   152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANC-------HSLVlmnnEAAELALHALRKPLSSTLIEASRLPQKSR 224

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998  323 QGNIEEAVRLYRKALEVF---------PE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 374
Cdd:cd24145   225 DQLLEAALKWAQKALDVAksikpkdrdPEcdqaCALALYNLGVIAEMLGNLDEARKLYKEAISLA 289
TPR_12 pfam13424
Tetratricopeptide repeat;
138-206 5.19e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 5.19e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998   138 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 206
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
281-393 5.37e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.03  E-value: 5.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  281 NLANALKEKGSVVEAEECYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQ 357
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEAL 173

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 698431998  358 GKLQEALMHYKEAIRISPTF------ADAYSNMGNT------LKEMQD 393
Cdd:COG4700   174 GDLEAAEAELEALARRYSGPearyryAKFLARQGRTaeakelLEEILD 221
TPR_1 pfam00515
Tetratricopeptide repeat;
276-309 5.53e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.87  E-value: 5.53e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   276 PDAYCNLANALKEKGSVVEAEECYNTALRLCPTH 309
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
COG3899 COG3899
Predicted ATPase [General function prediction only];
226-419 5.90e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.16  E-value: 5.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  226 RAVAAYLRALSLSPNHA-----VVHGNLAcvyyeqGLIDLAIDTYRRAielqphfpdaycnlANALKEKGSVVEAEECYN 300
Cdd:COG3899   670 RRIARALEARGPEPLEErlfelAHHLNRA------GERDRAARLLLRA--------------ARRALARGAYAEALRYLE 729

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  301 TALRLCP------THADSLNNLANIKREQGNIEEAVRLYRKALEV-------------FPEFAAAHSNLASVLqqQGKLQ 361
Cdd:COG3899   730 RALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAYANLGLLL--LGDYE 807

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998  362 EALMHYKEAIRISPTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 419
Cdd:COG3899   808 EAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALL 871
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 174-207 6.17e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 6.17e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    174 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 207
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 242-275 6.17e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 6.17e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    242 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 275
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 146-444 7.20e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.06  E-value: 7.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  146 LGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYinlgnVLKE 220
Cdd:COG3071    17 LAALLEGLlalaeGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAV-----LLTR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  221 ARI------FDRAVAAYLRALSLSPNHAVVhgnlacvyyeqglIDLAIDTYRRAIElqphfPDAYCNLANALKEKGSVVE 294
Cdd:COG3071    92 AELlldqgqAEQALATLEALRAGAPRHPQV-------------LRLLLQAYRQLGD-----WEELLELLPALRKHKALSA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  295 AE------ECYNTALRLCPTHADSLNNL------------------ANIKREQGNIEEAVRLYRKALEVFPefaaaHSNL 350
Cdd:COG3071   154 EEaqalerRAYLGLLRQAARDAEALKALwkalpraerrdpelaaayARALIALGDHDEAERLLREALKRQW-----DPRL 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  351 ASVLQQ--QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfADAHSNLASIHKDSGNI 428
Cdd:COG3071   229 VRLYGRlqGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDP 307

                         330
                  ....*....|....*.
gi 698431998  429 PEAIASYRTALKLKPD 444
Cdd:COG3071   308 EEAAEHYRKALALALG 323
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 344-377 7.37e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 7.37e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    344 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 377
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 378-411 7.66e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 7.66e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    378 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 411
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
412-445 1.12e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.12e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   412 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 445
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 7-173 1.14e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 45.57  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRsahfstlAIKqnplLAEAYSNLGnvykeRG 86
Cdd:PRK11788  110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQK-------AID----VAERLEKLG-----GD 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   87 QLQEAIEHYrhalrlkpdfidgYINLAAALVAAGDMEGAVQAYVSALQYNPDlyCVRS--DLGNLLKALGRLEEAKACYL 164
Cdd:PRK11788  174 SLRVEIAHF-------------YCELAQQALARGDLDAARALLKKALAADPQ--CVRAsiLLGDLALAQGDYAAAIEALE 238


                  ....*....
gi 698431998  165 KAIETQPNF 173
Cdd:PRK11788  239 RVEEQDPEY 247
TPR_7 pfam13176
Tetratricopeptide repeat;
74-104 1.20e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.22  E-value: 1.20e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 698431998    74 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD 104
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
TPR_19 pfam14559
Tetratricopeptide repeat;
86-138 1.27e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.03  E-value: 1.27e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 698431998    86 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 138
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPD 54
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 7-133 1.56e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 1.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998     7 LAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQcRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 86
Cdd:TIGR02917  776 LAELYLAQ---KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKG 851

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 698431998    87 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 133
Cdd:TIGR02917  852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
COG3899 COG3899
Predicted ATPase [General function prediction only];
7-161 1.57e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 46.00  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERHC---------MQLWRQEPDNTGVLL--LLSSIHFQCRRLDRSAHFSTLAIK------QNP 69
Cdd:COG3899   748 LLELAEALYLAGRFEEAEALLeralaaralAALAALRHGNPPASAraYANLGLLLLGDYEEAYEFGELALAlaerlgDRR 827

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   70 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 149
Cdd:COG3899   828 LEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAA 907

                         170
                  ....*....|..
gi 698431998  150 LKALGRLEEAKA 161
Cdd:COG3899   908 AAAAALAAAELA 919
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 276-309 2.01e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 2.01e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    276 PDAYCNLANALKEKGSVVEAEECYNTALRLCPTH 309
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 412-445 2.11e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 2.11e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 698431998    412 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 445
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 6-372 2.16e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.52  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    6 GLAELAH--REYQAGDFEAAERHCMQLWRQEpDNTGVLLLLSSihfqcrrldRSAHfstlaikqnpllaeaysnlgnvyk 83
Cdd:COG3071    16 LLAALLEglLALAEGRYARAEKLLSKAAEHS-EAPLLAYLLAA---------RAAQ------------------------ 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   84 ERGQLQEAIEHYRHALRLKPDFidgyiNLAAALVAA------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 157
Cdd:COG3071    62 ALGDYERRDEYLAQALELAPEA-----ELAVLLTRAellldqGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWE 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  158 EAKAcYLKAIETQPNFAVAWSnlgcvfnAQGEIWLAIHHFEKAVTlDPNFLDAYINlgNVLKEARIFDRAVAAYLRALSl 237
Cdd:COG3071   137 ELLE-LLPALRKHKALSAEEA-------QALERRAYLGLLRQAAR-DAEALKALWK--ALPRAERRDPELAAAYARALI- 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  238 spnhavvhgnlacvyyEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKgsvveAEEcyntALRLCPTHAD 311
Cdd:COG3071   205 ----------------ALGDHDEAERLLREALKRQWDprlvrlYGRLQGGDPAKQLKR-----AEK----WLKKHPNDPD 259

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 698431998  312 SLNNLANIKREQGNIEEAVRLYRKALEVFPEfAAAHSNLASVLQQQGKLQEALMHYKEAIR 372
Cdd:COG3071   260 LLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
TPR_10 pfam13374
Tetratricopeptide repeat;
71-101 2.51e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 39.41  E-value: 2.51e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 698431998    71 LAEAYSNLGNVYKERGQLQEAIEHYRHALRL 101
Cdd:pfam13374    1 TASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 247-310 2.60e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.01  E-value: 2.60e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998   247 NLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVVEAEECYNTALRLCPTHA 310
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_17 pfam13431
Tetratricopeptide repeat;
298-331 2.81e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 39.06  E-value: 2.81e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   298 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 331
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 193-273 3.66e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.31  E-value: 3.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  193 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 272
Cdd:NF033920  175 ALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALA 254


                  .
gi 698431998  273 P 273
Cdd:NF033920  255 P 255
COG3899 COG3899
Predicted ATPase [General function prediction only];
7-278 3.80e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.46  E-value: 3.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    7 LAELAHREYQAGDFEAAERH---CMQLWRQEPDNTG---VLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------ 68
Cdd:COG3899   708 LLRAARRALARGAYAEALRYlerALELLPPDPEEEYrlaLLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgn 787

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   69 -PLLAEAYSNLGNVYkeRGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAAGDMEGAV----QAYVSALQYNP 137
Cdd:COG3899   788 pPASARAYANLGLLL--LGDYEEAYEFGELALALAERLGDrrlearALFNLGFILHWLGPLREALellrEALEAGLETGD 865

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  138 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 217
Cdd:COG3899   866 AALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAAL 945

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 698431998  218 LKEARIFDRAVAAYLRALSLSPNHAVVHGnLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 278
Cdd:COG3899   946 AAAAAAAALAAALALAAAAAAAAAAALAA-AAAAAAAAAAAAAAAALEAAAAALLALLAAA 1005
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 64-271 4.20e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.20  E-value: 4.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    64 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAaalvaagdmegavqayvsALQYNpdlycvr 143
Cdd:TIGR00990  391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG------------------VTQYK------- 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   144 sdlgnllkaLGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 223
Cdd:TIGR00990  446 ---------EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   224 FDRAVAAYL-------RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 271
Cdd:TIGR00990  517 LFQWKQDFIeaenlceKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 310-342 4.34e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.66  E-value: 4.34e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 342
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 227-389 4.43e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.97  E-value: 4.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  227 AVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVVEaeecyntal 303
Cdd:PRK02603   54 ALENYEEALKLEEDpndRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAE--------- 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  304 rlcpthadslnnlanikrEQGNIEEAVRLYRKALEVfpefaaahsnlasvlqqqgklqealmhYKEAIRISPtfaDAYSN 383
Cdd:PRK02603  125 ------------------EAGDQDEAEALFDKAAEY---------------------------WKQAIRLAP---NNYIE 156


                  ....*.
gi 698431998  384 MGNTLK 389
Cdd:PRK02603  157 AQNWLK 162
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 224-347 4.56e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 43.64  E-value: 4.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  224 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVVEAEECYNTA 302
Cdd:PRK11788  196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPeYLSEVLPKLMECYQALGDEAEGLEFLRRA 275

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 698431998  303 LRLCPThADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 347
Cdd:PRK11788  276 LEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319
TPR_19 pfam14559
Tetratricopeptide repeat;
357-421 4.97e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.10  E-value: 4.97e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   357 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 421
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_19 pfam14559
Tetratricopeptide repeat;
323-363 5.07e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.10  E-value: 5.07e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 698431998   323 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 363
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEA 41
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 213-273 5.17e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.24  E-value: 5.17e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   213 NLGNVLKEARIFDRAVAAYLRAL---SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 273
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 259-413 5.42e-04

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 42.95  E-value: 5.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  259 DLAIDTYRRAIELQ-----PHfpDA---YCNLANALKeKGSVVEAEECYNTALRL------CPTHADSLNNLANI-KREQ 323
Cdd:cd15832    49 EEAGDAFLKAAECQlkldsKH--DAanaYVEAAKCYK-KVDPQEAVNCLEKAIEIytemgrFRQAAKHLKEIAELyENEL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  324 GNIEEAVRLYRKALEVFP-EFAAAHSN-----LASVLQQQGKLQEALMHYKEAIRISptfadaysnMGNTL-----KE-- 390
Cdd:cd15832   126 GDLDKAIEAYEQAADYYEgEGANSLANkcylkVADLAAQLEDYDKAIEIYEQVARSS---------LENNLlkysaKDyf 196

                         170       180       190
                  ....*....|....*....|....*....|..
gi 698431998  391 ---------MQDVQGALQCYTRAIQINPAFAD 413
Cdd:cd15832   197 lkaglchlaAGDVVAAQRALEKYAELDPSFAG 228
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 5-168 5.70e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.00  E-value: 5.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    5 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLgnvyk 83
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYL----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   84 erGQL---QEAIEHYR----------HALRLKPDFIDGYIN-----LAAALVAAG-----------DMEGAVQAYV-SAL 133
Cdd:cd24142    76 --GQLsggEEALQYYEkgieileeelQALQAASAEAEEEAEelkrkLSSALCALAeiymtdlcdepDAEQRCEELItKAL 153

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 698431998  134 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 168
Cdd:cd24142   154 ELDPTNPEALQTLASLRISQQRPDEAKEALRRSLE 188
TPR_1 pfam00515
Tetratricopeptide repeat;
146-173 6.20e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 6.20e-04
                           10        20
                   ....*....|....*....|....*...
gi 698431998   146 LGNLLKALGRLEEAKACYLKAIETQPNF 173
Cdd:pfam00515    7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 323-431 6.89e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 43.07  E-value: 6.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   323 QGNIEEAVRLYRKALEvfpeFAAAHSN----------LASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNM 384
Cdd:pfam17874   53 LGDLDAALQAMREAEA----LARRADSphvtlwallqQGEILRAQGRLHQALETYQQALQlardhglqHLPLHGFLLVGL 128

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 698431998   385 GNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSGNIPEA 431
Cdd:pfam17874  129 ADLLYEWNDLEEAEQHAQQGIQLgrqwePDAAVDAYVLLARIALAQGELEEA 180
TPR_17 pfam13431
Tetratricopeptide repeat;
64-93 7.80e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.91  E-value: 7.80e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 698431998    64 AIKQNPLLAEAYSNLGNVYKERGQLQEAIE 93
Cdd:pfam13431    5 ALELDPNNADAYYNLAVLLLELGQSETALQ 34
ST7 cd11557
Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor ...
 262-409 8.47e-04

Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor in human cancer cells. It appears to localize to the cytoplasm and plasma membrane, and may mediate tumor suppression by regulating genes that are involved in oncogenic pathways and/or maintain cellular structure. It has been suggested that the suppression of tumorigenicity is associated with a function in mediating the remodeling of the extracellular matrix. However, somatic mutations of ST7 have not been observed as being commonly associated with molecular pathogenesis in various human neoplasias.


Pssm-ID: 211407 [Multi-domain]  Cd Length: 458  Bit Score: 43.14  E-value: 8.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  262 IDTYRRAIELQPHFPDAYCNLANalKEKGSVVEAEECYNTALRLC------------------PTHADSLNNLANIK--- 320
Cdd:cd11557   142 IKAAHEALELNPECATALILLAE--EEAQTILEAEKLLKQALKAAeanyrksqqlqhqdpqheAVHRRDTNVLVYIKrrl 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  321 ----REQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVL---QQQGKLQEALMHYKEA-----IRISPTFA-------- 378
Cdd:cd11557   220 amcaRKLGRLKEAVKMMRDLMKEFPLLSVLniHENLIEALlelQAYADVQAVLAKYDDIslpksATICYTAAllkarava 299

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 698431998  379 -----DAYSNMGNTLKEMQdvqgALQCYTRAIQINP 409
Cdd:cd11557   300 dkfspEVASRRGLSTAEMN----AVEAIHRAVEFNP 331
TPR_17 pfam13431
Tetratricopeptide repeat;
264-297 9.22e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.52  E-value: 9.22e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   264 TYRRAIELQPHFPDAYCNLANALKEKGSVVEAEE 297
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_11 pfam13414
TPR repeat;
215-256 9.57e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 9.57e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 698431998   215 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 256
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
421-456 9.97e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 9.97e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 698431998  421 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 456
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL 36
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
163-338 1.02e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.18  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  163 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAihhfEKAVTLDPNFlDAYINLGNVLKEARIFDRAVAAYLRALS-LSPNH 241
Cdd:COG4700    49 VLPELRNSRDARRVQRAARNALDPGRELREL----EKALEFADTV-QNRVRLADALLELGRYDEAIELYEEALTgIFADD 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  242 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVVEAEECYNTALRLCPtHADSLNNLANI 319
Cdd:COG4700   124 PHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALARRYS-GPEARYRYAKF 202

                         170
                  ....*....|....*....
gi 698431998  320 KREQGNIEEAVRLYRKALE 338
Cdd:COG4700   203 LARQGRTAEAKELLEEILD 221
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 281-341 1.17e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.47  E-value: 1.17e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 698431998   281 NLANALKEKGSVVEAEECYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 341
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_8 pfam13181
Tetratricopeptide repeat;
146-172 1.22e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.38  E-value: 1.22e-03
                           10        20
                   ....*....|....*....|....*..
gi 698431998   146 LGNLLKALGRLEEAKACYLKAIETQPN 172
Cdd:pfam13181    7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 324-441 1.23e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 40.36  E-value: 1.23e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    324 GNIEEAVRLYRKAL-----EVFPEFAAAhsnlASVLQQQGKLQEALMHYKEAIrisptfADAYSNMGntlkemqDVQGAL 398
Cdd:smart01043   19 ADPEAALALLEAALalyrgPLLADVPDE----DWAEAERERLRELRLEALEAL------AEALLALG-------RHEEAL 81

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|...
gi 698431998    399 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 441
Cdd:smart01043   82 ALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 412-444 1.32e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.32e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   412 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 444
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_17 pfam13431
Tetratricopeptide repeat;
332-364 1.34e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.14  E-value: 1.34e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   332 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 364
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 19-116 1.41e-03

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 39.18  E-value: 1.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998    19 DFEAAeRHCMQLWRQEPDNTGVLLLLSsihF----QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------G 86
Cdd:pfam20308    1 DYDAA-VELLEALLALPEDARAQEQLA---LalarLPGDRDEALDVLEDLIERLGEDPETLGLLGRIYKRLwlesaedrE 76

                           90       100       110
                   ....*....|....*....|....*....|
gi 698431998    87 QLQEAIEHYRHALRLKPDFIDGyINLAAAL 116
Cdd:pfam20308   77 ALDQAIEAYRKAFELDPDDYPG-INAATLL 105
TPR_11 pfam13414
TPR repeat;
283-324 1.49e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.07  E-value: 1.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 698431998   283 ANALKEKGSVVEAEECYNTALRLCPTHADSLNNLANIKREQG 324
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 74-203 1.50e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 41.95  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   74 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAgdmegAVQAYVSALQYNPDLYCVRSDLGNLLKA- 152
Cdd:cd24145   149 FLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMN-----NEAAELALHALRKPLSSTLIEASRLPQKs 223

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998  153 -LGRLEEAKACYLKAI-------------ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 203
Cdd:cd24145   224 rDQLLEAALKWAQKALdvaksikpkdrdpECDQACALALYNLGVIAEMLGNLDEARKLYKEAISL 288
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 378-409 1.64e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.73  E-value: 1.64e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 698431998   378 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 409
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
209-241 1.66e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   209 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 241
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_7 pfam13176
Tetratricopeptide repeat;
312-339 1.74e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.75  E-value: 1.74e-03
                           10        20
                   ....*....|....*....|....*...
gi 698431998   312 SLNNLANIKREQGNIEEAVRLYRKALEV 339
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
TPR COG0790
TPR repeat [General function prediction only];
209-372 1.85e-03

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 41.07  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  209 DAYINLGNVLKEARI----FDRAVAAYLRALSLspNHAVVHGNLAcVYYEQGL-----IDLAIDTYRRAIELQphFPDAY 279
Cdd:COG0790    64 EAQYNLGLMYAEGRGvpkdYEKALEWFEKAAEQ--GDAEAQYNLG-LMYEEGLgvpqdYAKALEWYEKAAEQG--DADAQ 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  280 CNLANALKE----KGSVVEAEECYNTALRLcpTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVfpEFAAAHSNLA 351
Cdd:COG0790   139 YNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVLYENgrgvPKDPAKALEWYRKAAEQ--GDADAQYNLG 214

                         170       180
                  ....*....|....*....|....*.
gi 698431998  352 sVLQQQGK-----LQEALMHYKEAIR 372
Cdd:COG0790   215 -RLYLNGEgvekdLEKALRWLRKAAE 239
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 276-308 2.20e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 2.20e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   276 PDAYCNLANALKEKGSVVEAEECYNTALRLCPT 308
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_17 pfam13431
Tetratricopeptide repeat;
366-399 2.23e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.37  E-value: 2.23e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 698431998   366 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ 399
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
StaR_like cd05804
StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member ...
 103-263 2.54e-03

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.


Pssm-ID: 100115 [Multi-domain]  Cd Length: 355  Bit Score: 41.50  E-value: 2.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  103 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDlycvRSD---------LGNLLKalGRLEEAKACYLKAIETQPNF 173
Cdd:cd05804     3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----RATererahveaLSAWIA--GDLPKALALLEQLLDDYPRD 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  174 AVAWSNLGCVFNAQGEIWLAiHHFEKAVTL-DP-NFLDAYIN--LGNVLKEARIFDRAVAAYLRALSLSPN-----HAVV 244
Cdd:cd05804    77 LLALKLHLGAFGLGDFSGMR-DHVARVLPLwAPeNPDYWYLLgmLAFGLEEAGQYDRAEEAARRALELNPDdawavHAVA 155

                         170
                  ....*....|....*....
gi 698431998  245 HgnlacVYYEQGLIDLAID 263
Cdd:cd05804   156 H-----VLEMQGRFKEGIA 169
TPR_19 pfam14559
Tetratricopeptide repeat;
393-449 2.54e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.54e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998   393 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 449
Cdd:pfam14559    3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 17-146 2.67e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 41.82  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   17 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLlAEAYSNLGNVYKERGQLQEAIEHYR 96
Cdd:PRK09782  555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 698431998   97 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 146
Cdd:PRK09782  634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 209-241 3.31e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 3.31e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 698431998    209 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 241
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 186-290 3.32e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.66  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  186 AQGEIWLAIHHFEKAVTLDPNFLD-AYI--NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG------ 256
Cdd:PRK02603   47 ADGEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeea 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 698431998  257 --------LIDLAIDTYRRAIELqphFPDAYCNLANALKEKG 290
Cdd:PRK02603  127 gdqdeaeaLFDKAAEYWKQAIRL---APNNYIEAQNWLKTTG 165
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 383-444 3.45e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.93  E-value: 3.45e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   383 NMGNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 444
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_14 pfam13428
Tetratricopeptide repeat;
316-353 3.55e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 36.25  E-value: 3.55e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 698431998   316 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 353
Cdd:pfam13428    7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 146-173 3.58e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 3.58e-03
                            10        20
                    ....*....|....*....|....*...
gi 698431998    146 LGNLLKALGRLEEAKACYLKAIETQPNF 173
Cdd:smart00028    7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_17 pfam13431
Tetratricopeptide repeat;
162-194 4.54e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.60  E-value: 4.54e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   162 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 194
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR_8 pfam13181
Tetratricopeptide repeat;
310-342 4.88e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.45  E-value: 4.88e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   310 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 342
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_11 pfam13414
TPR repeat;
181-220 5.11e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.91  E-value: 5.11e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 698431998   181 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 220
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 115-206 5.30e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 5.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  115 ALVAAGDMEGAVQAYVSALQYNPD-------LYcvrsDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVF 184
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNsplapdaLY----WLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSY 77

                          90       100
                  ....*....|....*....|..
gi 698431998  185 NAQGEIWLAIHHFEKAVTLDPN 206
Cdd:COG1729    78 LELGDYDKARATLEELIKKYPD 99
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
310-440 6.17e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.48  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  310 ADSLNN---LANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 383
Cdd:COG4700    86 ADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLL 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 698431998  384 MGNTLKEMQDVQGALQCYTRAIQINPaFADAHSNLASIHKDSGNIPEAIASYRTALK 440
Cdd:COG4700   166 YARALEALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 344-376 7.10e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 7.10e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 698431998   344 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 376
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 323-406 7.15e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 39.99  E-value: 7.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998   323 QGNIEEAVRLYRKAL-----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRisptFADAYSNMGNT------LKEM 391
Cdd:pfam17874   14 KGDAERALELAEQALallpeDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEA----LARRADSPHVTlwallqQGEI 89

                           90
                   ....*....|....*....
gi 698431998   392 QDVQG----ALQCYTRAIQ 406
Cdd:pfam17874   90 LRAQGrlhqALETYQQALQ 108
TPR_9 pfam13371
Tetratricopeptide repeat;
214-278 8.03e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 8.03e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 698431998   214 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 278
Cdd:pfam13371    1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 325-438 8.55e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 39.48  E-value: 8.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698431998  325 NIEEAVRLYRKAlevfpefaAAHSNLASVLQQQGK--LQEALMHYK-----EAirisptfADAYSNMGNTLKEMqDVQGA 397
Cdd:cd15832    27 KYEEAAELYEKA--------ANAFKLAKNWEEAGDafLKAAECQLKldskhDA-------ANAYVEAAKCYKKV-DPQEA 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 698431998  398 LQCYTRAIQI-------NPAfADAHSNLASIH-KDSGNIPEAIASYRTA 438
Cdd:cd15832    91 VNCLEKAIEIytemgrfRQA-AKHLKEIAELYeNELGDLDKAIEAYEQA 138
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 209-240 9.73e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 9.73e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 698431998   209 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN 240
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH