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Conserved domains on  [gi|685333359|ref|XP_009104311|]
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photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Brassica rapa]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 21-254 4.18e-117

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00098:

Pssm-ID: 470693  Cd Length: 267  Bit Score: 335.73  E-value: 4.18e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  21 GKKLRLNKKLNVpavSRSGTSVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWA 100
Cdd:PLN00098  35 GTGGRMKVRLNA---TKGGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWA 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 101 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDV 180
Cdd:PLN00098 112 MLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDV 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 685333359 181 GYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 254
Cdd:PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
 
Name Accession Description Interval E-value
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 21-254 4.18e-117

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 335.73  E-value: 4.18e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  21 GKKLRLNKKLNVpavSRSGTSVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWA 100
Cdd:PLN00098  35 GTGGRMKVRLNA---TKGGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWA 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 101 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDV 180
Cdd:PLN00098 112 MLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDV 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 685333359 181 GYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 254
Cdd:PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
60-227 1.29e-68

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 208.70  E-value: 1.29e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359   60 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTD--KT 137
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQsvPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  138 TLFVVELILIGWAEGRRWADIIKPGSVNtdpifpnnkltGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 217
Cdd:pfam00504  81 LLALQILLLMGFLELARWQGGKAPGLGG-----------GGDRGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMI 149

                         170
                  ....*....|
gi 685333359  218 AVMGAWFQHI 227
Cdd:pfam00504 150 AFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 21-254 4.18e-117

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 335.73  E-value: 4.18e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  21 GKKLRLNKKLNVpavSRSGTSVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWA 100
Cdd:PLN00098  35 GTGGRMKVRLNA---TKGGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWA 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 101 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDV 180
Cdd:PLN00098 112 MLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDV 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 685333359 181 GYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 254
Cdd:PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 22-250 3.45e-92

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 271.88  E-value: 3.45e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  22 KKLRLNKKLNVPAVSRSGTSVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAM 101
Cdd:PLN00097  15 QKSRTVRPRGVASKARASRGPGAVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAM 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 102 LGAAGIFIPEFLTKIGILNTPSWYTAGE-QEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKL-TGTD 179
Cdd:PLN00097  95 LGLAGCVAPELLTKIGMADLPNWIDAAKwDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGdTNTD 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 685333359 180 VGYPGGLwFDPLGWGSgSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 250
Cdd:PLN00097 175 VGYPKGL-FDKFGWAK-DEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 16-254 8.12e-85

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 253.30  E-value: 8.12e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  16 PGFLGGKKLRLNKKLNVPAVSRSGTsvRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELV 95
Cdd:PLN00101  20 SRFLSGSSSKLNRELSFKPMPSSAT--RSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  96 HCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKL 175
Cdd:PLN00101  98 NGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL 177

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 685333359 176 TGTDVGYPGGLwFDPLGWgsgspAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 254
Cdd:PLN00101 178 PPNEVGYPGGI-FNPLNF-----APTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 37-254 3.61e-81

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 244.02  E-value: 3.61e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  37 RSGTSVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKI 116
Cdd:PLN00147  31 AASSGGINPVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVT 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 117 GILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGW 193
Cdd:PLN00147 111 GIRNLPVWYEAGAVKFeFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFfgLEAALEGLEPGYPGGPLFNPLGL 190

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 685333359 194 GSgSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 254
Cdd:PLN00147 191 AK-DIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLS 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
60-227 1.29e-68

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 208.70  E-value: 1.29e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359   60 PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTD--KT 137
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQsvPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  138 TLFVVELILIGWAEGRRWADIIKPGSVNtdpifpnnkltGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 217
Cdd:pfam00504  81 LLALQILLLMGFLELARWQGGKAPGLGG-----------GGDRGYPGGFGFDPLGLAKKDPETLAELKLKELKNGRLAMI 149

                         170
                  ....*....|
gi 685333359  218 AVMGAWFQHI 227
Cdd:pfam00504 150 AFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 33-253 9.23e-61

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 192.37  E-value: 9.23e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  33 PAVSRSGTSVRA-----VAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSsDPDSL------KWNAQAELVHCRWAM 101
Cdd:PLN00048  19 SSAKKARFVVRAeatppAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAggfiepQWLAYGEVINGRFAM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 102 LGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPN 172
Cdd:PLN00048  98 LGAAGAIAPEILGKAGLIpqeTALPWFQsgvippAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 173 NKLTGT--DVGYPGGLWFDPLGWGSgSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 250
Cdd:PLN00048 178 EKGLGGsgNPAYPGGPFFNPLGFGK-DEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVL 256


                 ...
gi 685333359 251 AAF 253
Cdd:PLN00048 257 TNL 259
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 32-250 7.91e-52

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 168.90  E-value: 7.91e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  32 VPAVSRSGTSVRAVAADpDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFipe 111
Cdd:PLN00100  17 SAGVSTTRRPRVRVAAR-ARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGIL--- 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 112 FLTKIGIlntPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPnnkltgtdvgypgglwFDPL 191
Cdd:PLN00100  93 FTDAVGL---PKFWEAGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFP----------------FDPT 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 685333359 192 GWGSgspakiKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 250
Cdd:PLN00100 154 GMDS------PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIF 206
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 16-256 1.56e-49

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 162.89  E-value: 1.56e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  16 PGFLGGKKLRLNKKLNVPAVSrsGTSVRAVAADpdrpiWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELV 95
Cdd:PLN00099  16 PSLLSSSKSKFASSVPLPNAN--GSSRVTMSAD-----WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELI 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  96 HCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA--GEQEYFTDKT------TLFVVELILIGWAEGRRwadiikpgSVNTD 167
Cdd:PLN00099  89 HCRWAMLAVPGILVPEALGLGNWVKAQEWAAIpgGQATYLGNPVpwgtlpTILAIEFLAIAFVEHQR--------SMEKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 168 PifpnnkltgTDVGYPGGLwFDPLGWgSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGH 246
Cdd:PLN00099 161 P---------EKKKYPGGA-FDPLGY-SKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQsAYPGTGPLENLATHLADPWH 229

                        250
                 ....*....|
gi 685333359 247 ATIFAAFTPK 256
Cdd:PLN00099 230 NNIGDIIIPR 239
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 49-255 1.81e-48

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 160.68  E-value: 1.81e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  49 PDRPIW---FPGSTPpEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGI-LNTPSW 124
Cdd:PLN00025  49 PDRPKYlgpFSGETP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVkFGEAVW 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 125 YTAGEQ-------EYFTDKT--------TLFVVELILIGWAEGRRwadiikpgsVNTDPIFpnnklTGTDVGYPGGLwFD 189
Cdd:PLN00025 128 FKAGAQifsegglDYLGNPSlvhaqsilAIWACQVVLMGAVEGYR---------VNGGPLG-----EGLDPLYPGGS-FD 192

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 685333359 190 PLGWGSgSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA---AFTP 255
Cdd:PLN00025 193 PLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAyatNFVP 260
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 43-254 5.34e-45

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 152.64  E-value: 5.34e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  43 RAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDP-------DSLKWN-------------------------- 89
Cdd:PLN00187  44 KSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAeylqfdlDSLDQNlaknlagdvigtrteaseikstpfqp 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  90 ----------AQAELVHCRWAMLGAAGIFIPEFLTKIgilntpSWYTAGEQE------YFTDK-----TTLFVVELILIG 148
Cdd:PLN00187 124 ysevfglqrfRECELIHGRWAMLATLGALSVEALTGV------TWQDAGKVElvdgssYLGQPlpfsiTTLIWIEVLVIG 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 149 WAEGRRWADIIkpgsvntdpifPNNKLtgtdvgYPGGLWFDPLGWGSgSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIY 228
Cdd:PLN00187 198 YIEFQRNAELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKETLQLAEIKHARLAMVAFLGFAVQAAA 259

                        250       260
                 ....*....|....*....|....*.
gi 685333359 229 TGTGPIDNLFAHLADPGHATIFAAFT 254
Cdd:PLN00187 260 TGKGPLNNWATHLSDPLHTTIIDTFS 285
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 50-253 1.63e-39

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 139.55  E-value: 1.63e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  50 DRPIWFpGSTP---PEWLDGSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILN--TPSW 124
Cdd:PLN00171 107 ERPRWL-GPIPydyPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHfaEPVW 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 125 YTAGEQE--------------YFTDKTTLFVV---ELILIGWAEGRRWADIikpgsvntDPIFPNNKLTGTDVGYPGGLW 187
Cdd:PLN00171 186 WRVGYAKlqgdtldylgipglHIAGSQGVIVIaicQALLMVGPEYARYCGI--------EALEPLGIYLPGDINYPGGAL 257

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 685333359 188 FDPLGWgSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
Cdd:PLN00171 258 FDPLGL-SKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 16-225 1.46e-38

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 135.06  E-value: 1.46e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  16 PGFLGGKKLRLNKKLNVPAVSRSGTSVRAVAADPDRPIWFPGS------TPPEWLDGSLPGDFGFDPLGLSSDPDSLKWN 89
Cdd:PLN00170  16 SFLTGGKRSLALLVGTGAAKVGARTLLVVAAAAQPKKSWIPAVkgggnlVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  90 AQAELVHCRWAMLGAAGIFIPEFLTKIgilntpSWYTAGEQEYFTDK---TTLFVVELILIGWAEGRRWADIIKPGSVNT 166
Cdd:PLN00170  96 REAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPfsfGSLLGTQLLLMGWVESKRWVDFFNPDSQSV 169

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 685333359 167 DPIFPNNKL-------TGtDVGYPGGLWFDPLGWGSGSP--------AKIKELRTKEIKNGRLAMLAVMGAWFQ 225
Cdd:PLN00170 170 EWATPWSRTaenfanaTG-LQGYPGGKFFDPLGLAGTVKdgvyipdfEKLERLKLAEIKHARLAMVAMLIFYFE 242
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 33-232 1.07e-12

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 65.09  E-value: 1.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  33 PAVSRSGTSVRAVAADPDRPIWFPGSTPpEWLDGSLPGDFGFDPLGLSSD-PDSLKWNAQAELVHCRWAMLGAAGIFIPE 111
Cdd:PLN00089  19 AQKSRTRPATPTAAAEDDCPGAIGFAAK-EFMFIGKTGSKKFDPLGLAEKvEEFLPWFRESELKHGRAAMLAVAGFIAPD 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359 112 FLTKIG-------ILNTPSWYTAGEQEYFTDKTTLFV--VELIligwaegrrwadIIKPGSVNTdpifpnNKLTGTdvgy 182
Cdd:PLN00089  98 FVRIPGeaysfaaIPKTIDAHDALLKSGAMIQIFAWIgfVDLA------------VSAPAAAAA------AEFDRT---- 155

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 685333359 183 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 232
Cdd:PLN00089 156 PGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
173-255 3.17e-10

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 57.32  E-value: 3.17e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685333359  173 NKLTGTDVGYPGglwFDPLGWGSGsPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDnlFAHLADPGHATIFAA 252
Cdd:pfam00504   3 AYLDGSLPGDYG---FDPLGLSAD-PETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGN--EPVWFEAGAVALHAQ 76


                  ...
gi 685333359  253 FTP 255
Cdd:pfam00504  77 SVP 79
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-112 4.56e-09

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 53.85  E-value: 4.56e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 685333359   55 FPGSTPPEWLDGSLPGDFGFDPLGLSS-DPDSLKWNAQAELVHCRWAMLGAAGIFIPEF 112
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLAKkDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 183-232 6.26e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 42.81  E-value: 6.26e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 685333359 183 PGGLWfDPLGWGS-GSPAKIKELRTKEIKNGRLAMLAVMGawfqHIYTGTG 232
Cdd:PLN00120  43 PLGFF-DPLGLVDdGDQEKFDRLRYVEIKHGRISMLAVVG----YLVTEAG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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