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Conserved domains on  [gi|1958669206|ref|XP_008767565|]
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ankyrin repeat and LEM domain-containing protein 2 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LEM_ANKL2 cd12944
LEM (Lap2/Emerin/Man1) domain found in ankyrin repeat and LEM domain-containing protein 2 ...
 208-250 7.19e-20

LEM (Lap2/Emerin/Man1) domain found in ankyrin repeat and LEM domain-containing protein 2 (ANKL2); The family includes ANKL2 and similar proteins. Although their biological roles remain unclear, the family members share an N-terminal LEM domain and an ankyrin repeat region. The LEM domain, mainly found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The ankyrin repeats are unique motifs mediating protein-protein interactions.


:

Pssm-ID: 240591  Cd Length: 43  Bit Score: 83.63  E-value: 7.19e-20
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958669206  208 RLKLLNPDDLRQEVMKAGLKCGPITSTTRFIFEKKLAQALLEQ 250
Cdd:cd12944      1 RLKKLSPDELREELRKAGLKCGPITSTTRFLFEKKLAQALLEQ 43
ANKYR super family cl34000
Ankyrin repeat [Signal transduction mechanisms];
445-606 4.28e-06

Ankyrin repeat [Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG0666:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 49.95  E-value: 4.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  445 NPRTQDLTAKLRKAVERGEEHTFsdliwsnpRYLIGSGDNPTIVQEGcRYNVMHVAAKENQASVCQLTLETLENPEfmrl 524
Cdd:COG0666     81 NAKDDGGNTLLHAAARNGDLEIV--------KLLLEAGADVNARDKD-GETPLHLAAYNGNLEIVKLLLEAGADVN---- 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  525 mYPDDN-----MDMLQKRILYIVDLYL------NTPDKVGFdTPLHFACKFGNVDVVNVLSSHPLIVkNPRNKYGKTPED 593
Cdd:COG0666    148 -AQDNDgntplHLAAANGNLEIVKLLLeagadvNARDNDGE-TPLHLAAENGHLEIVKLLLEAGADV-NAKDNDGKTALD 224

                          170
                   ....*....|...
gi 1958669206  594 VICERSKNKSVEL 606
Cdd:COG0666    225 LAAENGNLEIVKL 237
Cauli_VI pfam01693
Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. ...
 360-391 8.93e-05

Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner.


:

Pssm-ID: 460297 [Multi-domain]  Cd Length: 44  Bit Score: 40.85  E-value: 8.93e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958669206  360 VYEDKKEALQAVKLIKGSRFKAFPTREDAEKF 391
Cdd:pfam01693   13 IYTTWDECKAQVKGFPGAKYKSFKTREEAEAF 44
COG5236 super family cl28715
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
171-318 4.55e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5236:

Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 40.77  E-value: 4.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  171 KRPRDPNRCGTLSSLPGASAAV------SAQPGEVMTMDAMLARLKLLNP-DDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:COG5236    329 KRKKAPARVSVIDPSGGNARAPmahrggSRQDTASPSTEAELPKYLNRNIlEEERRKLQKRRLVIDRICKAEGNEIEEII 408

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958669206  244 AQALLEQGGlLTSSLPKHSEVTGTAFIHGTSRTPAFVDRKQTQQACLSEDRDFGYSVGLNPPEEEAVTSSVHPIP 318
Cdd:COG5236    409 NEFLGDSID-VTEAFNRISKVTGDAAALKLFESAPFGPKQSVVEGSIKALRKRVMFPKFVPSEPVRYREPERKGP 482
 
Name Accession Description Interval E-value
LEM_ANKL2 cd12944
LEM (Lap2/Emerin/Man1) domain found in ankyrin repeat and LEM domain-containing protein 2 ...
 208-250 7.19e-20

LEM (Lap2/Emerin/Man1) domain found in ankyrin repeat and LEM domain-containing protein 2 (ANKL2); The family includes ANKL2 and similar proteins. Although their biological roles remain unclear, the family members share an N-terminal LEM domain and an ankyrin repeat region. The LEM domain, mainly found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The ankyrin repeats are unique motifs mediating protein-protein interactions.


Pssm-ID: 240591  Cd Length: 43  Bit Score: 83.63  E-value: 7.19e-20
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958669206  208 RLKLLNPDDLRQEVMKAGLKCGPITSTTRFIFEKKLAQALLEQ 250
Cdd:cd12944      1 RLKKLSPDELREELRKAGLKCGPITSTTRFLFEKKLAQALLEQ 43
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
445-606 4.28e-06

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 49.95  E-value: 4.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  445 NPRTQDLTAKLRKAVERGEEHTFsdliwsnpRYLIGSGDNPTIVQEGcRYNVMHVAAKENQASVCQLTLETLENPEfmrl 524
Cdd:COG0666     81 NAKDDGGNTLLHAAARNGDLEIV--------KLLLEAGADVNARDKD-GETPLHLAAYNGNLEIVKLLLEAGADVN---- 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  525 mYPDDN-----MDMLQKRILYIVDLYL------NTPDKVGFdTPLHFACKFGNVDVVNVLSSHPLIVkNPRNKYGKTPED 593
Cdd:COG0666    148 -AQDNDgntplHLAAANGNLEIVKLLLeagadvNARDNDGE-TPLHLAAENGHLEIVKLLLEAGADV-NAKDNDGKTALD 224

                          170
                   ....*....|...
gi 1958669206  594 VICERSKNKSVEL 606
Cdd:COG0666    225 LAAENGNLEIVKL 237
Cauli_VI pfam01693
Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. ...
 360-391 8.93e-05

Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner.


Pssm-ID: 460297 [Multi-domain]  Cd Length: 44  Bit Score: 40.85  E-value: 8.93e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958669206  360 VYEDKKEALQAVKLIKGSRFKAFPTREDAEKF 391
Cdd:pfam01693   13 IYTTWDECKAQVKGFPGAKYKSFKTREEAEAF 44
LEM pfam03020
LEM domain; The LEM domain is 50 residues long and is composed of two parallel alpha helices. ...
 212-243 1.38e-04

LEM domain; The LEM domain is 50 residues long and is composed of two parallel alpha helices. This domain is found in inner nuclear membrane proteins. It is called the LEM domain after LAP2, Emerin and Man1.


Pssm-ID: 460781  Cd Length: 40  Bit Score: 40.16  E-value: 1.38e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958669206  212 LNPDDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:pfam03020    5 LSDEELREQLKEYGVSPGPITATTRKLYEKKL 36
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 517-591 3.56e-04

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 44.27  E-value: 3.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  517 ENPEFMRLMYPDDNMDMLQKRILYIVDL-------YL-------NTPDKVGFdTPLHFACKFGNVDVVNVL---SSHPli 579
Cdd:PHA03100   142 ENLLHLYLESNKIDLKILKLLIDKGVDInaknrvnYLlsygvpiNIKDVYGF-TPLHYAVYNNNPEFVKYLldlGANP-- 218

                           90
                   ....*....|..
gi 1958669206  580 vkNPRNKYGKTP 591
Cdd:PHA03100   219 --NLVNKYGDTP 228
Ank_5 pfam13857
Ankyrin repeats (many copies);
546-591 3.01e-03

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 36.94  E-value: 3.01e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1958669206  546 LNTPDKVGFdTPLHFACKFGNVDVVNVLSSHPLIVKNpRNKYGKTP 591
Cdd:pfam13857    9 LNRLDGEGY-TPLHVAAKYGALEIVRVLLAYGVDLNL-KDEEGLTA 52
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
171-318 4.55e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 40.77  E-value: 4.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  171 KRPRDPNRCGTLSSLPGASAAV------SAQPGEVMTMDAMLARLKLLNP-DDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:COG5236    329 KRKKAPARVSVIDPSGGNARAPmahrggSRQDTASPSTEAELPKYLNRNIlEEERRKLQKRRLVIDRICKAEGNEIEEII 408

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958669206  244 AQALLEQGGlLTSSLPKHSEVTGTAFIHGTSRTPAFVDRKQTQQACLSEDRDFGYSVGLNPPEEEAVTSSVHPIP 318
Cdd:COG5236    409 NEFLGDSID-VTEAFNRISKVTGDAAALKLFESAPFGPKQSVVEGSIKALRKRVMFPKFVPSEPVRYREPERKGP 482
LEM smart00540
in nuclear membrane-associated proteins; LEM, domain in nuclear membrane-associated proteins, ...
 212-243 6.35e-03

in nuclear membrane-associated proteins; LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.


Pssm-ID: 128813  Cd Length: 44  Bit Score: 35.77  E-value: 6.35e-03
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1958669206   212 LNPDDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:smart00540    6 LSDAELRAELKQYGLPPGPITDTTRKLYEKKL 37
 
Name Accession Description Interval E-value
LEM_ANKL2 cd12944
LEM (Lap2/Emerin/Man1) domain found in ankyrin repeat and LEM domain-containing protein 2 ...
 208-250 7.19e-20

LEM (Lap2/Emerin/Man1) domain found in ankyrin repeat and LEM domain-containing protein 2 (ANKL2); The family includes ANKL2 and similar proteins. Although their biological roles remain unclear, the family members share an N-terminal LEM domain and an ankyrin repeat region. The LEM domain, mainly found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The ankyrin repeats are unique motifs mediating protein-protein interactions.


Pssm-ID: 240591  Cd Length: 43  Bit Score: 83.63  E-value: 7.19e-20
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958669206  208 RLKLLNPDDLRQEVMKAGLKCGPITSTTRFIFEKKLAQALLEQ 250
Cdd:cd12944      1 RLKKLSPDELREELRKAGLKCGPITSTTRFLFEKKLAQALLEQ 43
LEM cd12934
LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner ...
 212-247 7.18e-09

LEM (Lap2/Emerin/Man1) domain found in emerin, lamina-associated polypeptide 2 (LAP2), inner nuclear membrane protein Man1 and similar proteins; The family corresponds to a group of inner nuclear membrane proteins containing LEM domain. Emerin occurs in four phosphorylated forms and plays a role in cell cycle-dependent events. It is absent from the inner nuclear membrane in most patients with X-linked muscular dystrophy. Emerin interacts with A-type and B-type lamins. Man1, also termed LEM domain-containing protein 3 (LEMD3) is an integral protein of the inner nuclear membrane that binds to nuclear lamins and emerin, thus playing a role in nuclear organization. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and post-mitotic reassembly. Some LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are non-membrane nuclear polypeptides. This family also contains LEM domain-containing protein LEMP-1 and LEM2. LEMP-1, also termed cancer/testis antigen 50 (CT50), is encoded by LEMD1, a novel testis-specific gene expressed in colorectal cancers. LEMP-1 may function as a cancer-testis antigen for immunotherapy of colorectal carcinoma (CRC). LEM2, also termed LEMD2, is a novel Man1-related ubiquitously expressed inner nuclear membrane protein required for normal nuclear envelope morphology. Association with lamin A is required for its proper nuclear envelope localization while its binding to lamin C plays an important role in the organization of lamin A/C complexes. Some uncharacterized LEM domain-containing proteins are also included in this family. Unlike other family members, these harbor an ankyrin repeat region that may mediate protein-protein interactions.


Pssm-ID: 240585  Cd Length: 37  Bit Score: 52.02  E-value: 7.18e-09
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1958669206  212 LNPDDLRQEVMKAGLKCGPITSTTRFIFEKKLAQAL 247
Cdd:cd12934      1 LSDDELRRELKELGEPPGPITDTTRKVYLKKLAKLL 36
LEM_LAP2_LEMD1 cd12940
LEM (Lap2/Emerin/Man1) domain found in lamina-associated polypeptide 2 (LAP2), LEM ...
 209-250 6.61e-08

LEM (Lap2/Emerin/Man1) domain found in lamina-associated polypeptide 2 (LAP2), LEM domain-containing protein 1 (LEMP-1) and similar proteins; This CD corresponds to the LEM domain of LAP2, LEMP-1 and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and post-mitotic reassembly. Some of LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are non-membrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal LEM domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Although LEM and LEM-like domains share the same structural fold composed of two large parallel alpha helices, the biochemical nature of the solvent-accessible residues is completely different, indicating that the two domains may target different protein surfaces. The LEM domain interacts with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF) while the LEM-like domain is involved in chromosome binding. LEMP-1, also termed cancer/testis antigen 50 (CT50), is encoded by LEMD1, a novel testis-specific gene expressed in colorectal cancers. It may function as a cancer-testis antigen for immunotherapy of colorectal carcinoma (CRC). LEMP-1 contains an N-terminal LEM domain.


Pssm-ID: 240587  Cd Length: 42  Bit Score: 49.61  E-value: 6.61e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1958669206  209 LKLLNPDDLRQEVMKAGLKCGPITSTTRFIFEKKLaQALLEQ 250
Cdd:cd12940      2 VTELSDEELKAQLLKYGVKPGPITASTRKLYEKKL-QKLLDQ 42
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
445-606 4.28e-06

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 49.95  E-value: 4.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  445 NPRTQDLTAKLRKAVERGEEHTFsdliwsnpRYLIGSGDNPTIVQEGcRYNVMHVAAKENQASVCQLTLETLENPEfmrl 524
Cdd:COG0666     81 NAKDDGGNTLLHAAARNGDLEIV--------KLLLEAGADVNARDKD-GETPLHLAAYNGNLEIVKLLLEAGADVN---- 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  525 mYPDDN-----MDMLQKRILYIVDLYL------NTPDKVGFdTPLHFACKFGNVDVVNVLSSHPLIVkNPRNKYGKTPED 593
Cdd:COG0666    148 -AQDNDgntplHLAAANGNLEIVKLLLeagadvNARDNDGE-TPLHLAAENGHLEIVKLLLEAGADV-NAKDNDGKTALD 224

                          170
                   ....*....|...
gi 1958669206  594 VICERSKNKSVEL 606
Cdd:COG0666    225 LAAENGNLEIVKL 237
Cauli_VI pfam01693
Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. ...
 360-391 8.93e-05

Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner.


Pssm-ID: 460297 [Multi-domain]  Cd Length: 44  Bit Score: 40.85  E-value: 8.93e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958669206  360 VYEDKKEALQAVKLIKGSRFKAFPTREDAEKF 391
Cdd:pfam01693   13 IYTTWDECKAQVKGFPGAKYKSFKTREEAEAF 44
LEM pfam03020
LEM domain; The LEM domain is 50 residues long and is composed of two parallel alpha helices. ...
 212-243 1.38e-04

LEM domain; The LEM domain is 50 residues long and is composed of two parallel alpha helices. This domain is found in inner nuclear membrane proteins. It is called the LEM domain after LAP2, Emerin and Man1.


Pssm-ID: 460781  Cd Length: 40  Bit Score: 40.16  E-value: 1.38e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958669206  212 LNPDDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:pfam03020    5 LSDEELREQLKEYGVSPGPITATTRKLYEKKL 36
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 517-591 3.56e-04

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 44.27  E-value: 3.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  517 ENPEFMRLMYPDDNMDMLQKRILYIVDL-------YL-------NTPDKVGFdTPLHFACKFGNVDVVNVL---SSHPli 579
Cdd:PHA03100   142 ENLLHLYLESNKIDLKILKLLIDKGVDInaknrvnYLlsygvpiNIKDVYGF-TPLHYAVYNNNPEFVKYLldlGANP-- 218

                           90
                   ....*....|..
gi 1958669206  580 vkNPRNKYGKTP 591
Cdd:PHA03100   219 --NLVNKYGDTP 228
LEM_LEMD2 cd12941
LEM (Lap2/Emerin/Man1) domain found in LEM domain-containing protein 2 (LEM2); This CD ...
 212-243 2.72e-03

LEM (Lap2/Emerin/Man1) domain found in LEM domain-containing protein 2 (LEM2); This CD corresponds to the LEM domain that is responsible for the interaction with chromatin protein barrier-to-autointegration factor (BAF). LEM2, also termed LEMD2, is a novel Man1-related ubiquitously expressed inner nuclear membrane protein required for normal nuclear envelope morphology. Association with lamin A is required for its proper nuclear envelope localization. It also binds to lamin C and plays an important role in the organization of lamin A/C complexes. LEM2 contains an N-terminal LEM domain, two putative transmembrane domains and a MAN1-Src1p C-terminal (MSC) domain, but lacks the Man1-specific C-terminal RNA recognition motif (RRM).


Pssm-ID: 240588  Cd Length: 38  Bit Score: 36.42  E-value: 2.72e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958669206  212 LNPDDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:cd12941      1 LTDAELRRELLALGFRPGPITETTRKVYIKKL 32
Ank_5 pfam13857
Ankyrin repeats (many copies);
546-591 3.01e-03

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 36.94  E-value: 3.01e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1958669206  546 LNTPDKVGFdTPLHFACKFGNVDVVNVLSSHPLIVKNpRNKYGKTP 591
Cdd:pfam13857    9 LNRLDGEGY-TPLHVAAKYGALEIVRVLLAYGVDLNL-KDEEGLTA 52
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
171-318 4.55e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 40.77  E-value: 4.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669206  171 KRPRDPNRCGTLSSLPGASAAV------SAQPGEVMTMDAMLARLKLLNP-DDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:COG5236    329 KRKKAPARVSVIDPSGGNARAPmahrggSRQDTASPSTEAELPKYLNRNIlEEERRKLQKRRLVIDRICKAEGNEIEEII 408

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958669206  244 AQALLEQGGlLTSSLPKHSEVTGTAFIHGTSRTPAFVDRKQTQQACLSEDRDFGYSVGLNPPEEEAVTSSVHPIP 318
Cdd:COG5236    409 NEFLGDSID-VTEAFNRISKVTGDAAALKLFESAPFGPKQSVVEGSIKALRKRVMFPKFVPSEPVRYREPERKGP 482
LEM smart00540
in nuclear membrane-associated proteins; LEM, domain in nuclear membrane-associated proteins, ...
 212-243 6.35e-03

in nuclear membrane-associated proteins; LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.


Pssm-ID: 128813  Cd Length: 44  Bit Score: 35.77  E-value: 6.35e-03
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1958669206   212 LNPDDLRQEVMKAGLKCGPITSTTRFIFEKKL 243
Cdd:smart00540    6 LSDAELRAELKQYGLPPGPITDTTRKLYEKKL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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