|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
314-1047 |
3.68e-22 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 103.62 E-value: 3.68e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 314 FIERTFMATPSYVHVATELGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLkeVQKSL 393
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL--LKKAP 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 394 GKSEVLiFLQALLMSRKHKGEEETTALlKEAVELHFSSMQGIPLG--SEY----FEKLDPYFlvciaKEYLLFCPKQP-- 465
Cdd:TIGR02917 259 NSPLAH-YLKALVDFQKKNYEDARETL-QDALKSAPEYLPALLLAgaSEYqlgnLEQAYQYL-----NQILKYAPNSHqa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 466 -RLPG--QIVSPLLKQVAVILNPVVKAAPalIDPLYL-MAQVRYY-SGELENAQSILQRCLELDPASVDAHLLMCQIYLA 540
Cdd:TIGR02917 332 rRLLAsiQLRLGRVDEAIATLSPALGLDP--DDPAALsLLGEAYLaLGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 541 QGNFGMCFHCLELGVSHNFQVRDhplYHLIKARALNKAGDYPEAIKTLKmviklpALKKEEGRKflrPSVQpSQRASILL 620
Cdd:TIGR02917 410 QGDPSEAIADLETAAQLDPELGR---ADLLLILSYLRSGQFDKALAAAK------KLEKKQPDN---ASLH-NLLGAIYL 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 621 ELVEALRLNGELHEATKVMQDTINEfggtpeenRITIANVDLvlSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQT 700
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPA--------AANLARIDI--QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 701 LRDRRlYIRCYRELCEHLPGPHT-SLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYE 779
Cdd:TIGR02917 547 GNEEE-AVAWLEKAAELNPQEIEpALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 780 AAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQALEHDivqdipsmMNDVKCLLLLAKvykshkkeavIETLNKALDL 858
Cdd:TIGR02917 626 KLLALQPDSALAlLLLADAYAVMKNYAKAITSLKRALELK--------PDNTEAQIGLAQ----------LLLAAKRTES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 859 QSRILKRvpleqpemIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLeLAQLYLLQGHLDLCEQH 938
Cdd:TIGR02917 688 AKKIAKS--------LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKT 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 939 CAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSgkleDIPAFFELAKKVSSRVP 1018
Cdd:TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL----KDPRALEYAERALKLAP 834
|
730 740
....*....|....*....|....*....
gi 578805742 1019 LEPGFNYCRGIYCWHIGQPNEALKFLNKA 1047
Cdd:TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
725-1002 |
5.73e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.49 E-value: 5.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 725 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKK 803
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAeALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 804 VNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQSRilkrvpleqpemipsqkqlAA 882
Cdd:COG2956 92 LDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDwEKAIEVLERLLKLGPE-------------------NA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 883 SICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFR 962
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 578805742 963 KQKHEAAINLYHQVLEKAPDNFLVLhKLIDLLRRSGKLED 1002
Cdd:COG2956 225 LGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEA 263
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
507-1305 |
5.38e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.22 E-value: 5.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNFQVRDHplyHLIKARALNKAGDYPEAIK 586
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA---LLLKGDLLLSLGNIELALA 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 587 TLKMVIKLpalkkeegrkflrpsvQPSQRASILLELVEALRLnGELHEATKVMQDTINEFGGTPEENRITiANVDLvlSK 666
Cdd:TIGR02917 215 AYRKAIAL----------------RPNNIAVLLALATILIEA-GEFEEAEKHADALLKKAPNSPLAHYLK-ALVDF--QK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 667 GNVDVALNMLRNILPKQSCYMEARE--KMANIYLQTLRDRRLYIRCYrelCEHLPGPHTSLLLgdaLMSIL----EPEKA 740
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLlaGASEYQLGNLEQAYQYLNQI---LKYAPNSHQARRL---LASIQlrlgRVDEA 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 741 LEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGqdflccdlgklllklkkvNKAEKVLKQALEHdiv 820
Cdd:TIGR02917 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP------------------ENAAARTQLGISK--- 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 821 qdipSMMNDVkcllllakvykshkkEAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAasiciqfaEHYLAEKEYDK 900
Cdd:TIGR02917 408 ----LSQGDP---------------SEAIADLETAAQLD-----------PELGRADLLLI--------LSYLRSGQFDK 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 901 AVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKA 980
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 981 PDNFLVLHKLIDLLRRSGKledipaffelakkvssrvplepgfnycrgiycwhigqPNEALKFLNKARKdstwgqsaiyh 1060
Cdd:TIGR02917 530 PKNLRAILALAGLYLRTGN-------------------------------------EEEAVAWLEKAAE----------- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1061 mvqicLNPDNEvvggeafenqgAESKSNTCSYMEKKELEQqgvstAEKLLREFyphSDSSQTQLRLLQGLCRLATREKaN 1140
Cdd:TIGR02917 562 -----LNPQEI-----------EPALALAQYYLGKGQLKK-----ALAILNEA---ADAAPDSPEAWLMLGRAQLAAG-D 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1141 MEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALE 1220
Cdd:TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR------ALELKPDNTEAQIGLAQLLLAAKRTESAKK 690
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1221 LLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgfKLAFNYLKDKKFVEAIEICNDVLREHPD 1300
Cdd:TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI--KLHRALLASGNTAEAVKTLEAWLKTHPN 768
|
....*
gi 578805742 1301 YPKIR 1305
Cdd:TIGR02917 769 DAVLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
664-979 |
8.14e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.17 E-value: 8.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 742
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 743 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHDivq 821
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLD--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 822 diPsmmNDVKCLLLLAKVYkshkkeavietlnkaldlqsrilkrvpleqpemipsqkqlaasiciqfaehyLAEKEYDKA 901
Cdd:COG2956 175 --P---DCARALLLLAELY----------------------------------------------------LEQGDYEEA 197
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578805742 902 VQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLmADLMFRKQKHEAAINLYHQVLEK 979
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRR 274
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
498-818 |
2.06e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.01 E-value: 2.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 498 YLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNK 577
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 578 AGDYPEAIKTLKMVIKLPAlkkeegrkflrpsvqpsqrasillELVEALRLNGELHEATKvmqdtinefggtpeenriti 657
Cdd:COG2956 89 AGLLDRAEELLEKLLELDP------------------------DDAEALRLLAEIYEQEG-------------------- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 658 anvdlvlskgNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILE 736
Cdd:COG2956 125 ----------DWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGD 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 737 PEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALE 816
Cdd:COG2956 194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
..
gi 578805742 817 HD 818
Cdd:COG2956 274 RH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-775 |
1.26e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.52 E-value: 1.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 5 DSSLMAGIIYYSQEKYfhhvQQAAAV---GLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIR----HHPDVSLcsTM 77
Cdd:TIGR02917 194 DALLLKGDLLLSLGNI----ELALAAyrkAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLkkapNSPLAHY--LK 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 78 ALI-YAHKRCEiidrEAIQELEYSLKEIRKTVsgTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLT 156
Cdd:TIGR02917 268 ALVdFQKKNYE----DARETLQDALKSAPEYL--PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 157 SDKPHTAKKAIEYLEQGIQDTKDVLGLMGKAmyFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEM 236
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEA--YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 237 GHRILEKDESNIDACQILTVHELaREGNMttatNHVRNLIKALETREPENPSLHLKkiivvsrlcgshqvilglvcsfie 316
Cdd:TIGR02917 420 LETAAQLDPELGRADLLLILSYL-RSGQF----DKALAAAKKLEKKQPDNASLHNL------------------------ 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 317 rtfmatpsyvhvateLGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEflKEVQKSLGKS 396
Cdd:TIGR02917 471 ---------------LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE--KVLTIDPKNL 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 397 EVLIFLQALLMSRKHkgEEETTALLKEAVELHFSSMQG-IPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRL-----PGQ 470
Cdd:TIGR02917 534 RAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPaLALAQYYLGKGQLKKALAILNEAADAAPDSPEAwlmlgRAQ 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 471 IVSPLLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHc 550
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 551 lelgVSHNFQVR--DHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPSqrASILLELVEALRL 628
Cdd:TIGR02917 691 ----IAKSLQKQhpKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----------------APS--SQNAIKLHRALLA 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 629 NGELHEATKVMQDTINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQTLRDRRLYi 708
Cdd:TIGR02917 749 SGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALE- 824
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578805742 709 rcYRELCEHL-PGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAI 775
Cdd:TIGR02917 825 --YAERALKLaPNIPAILdTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
482-751 |
3.73e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 3.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 482 ILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqv 561
Cdd:COG2956 30 LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 562 RDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvqPSQRASILLELVEALRLNGELHEATKVMQD 641
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----------------GPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 642 TINEfggTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGP 721
Cdd:COG2956 170 ALKL---DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALELDPSD 245
|
250 260 270
....*....|....*....|....*....|
gi 578805742 722 HTSLLLGDALMSILEPEKALEVYDEAYRQN 751
Cdd:COG2956 246 DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
114-428 |
2.59e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.77 E-value: 2.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 114 YYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQDTKD-VLGLMGKAMYFMM 192
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY---DRAIRIHQKLLERDPDrAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 193 QQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACqiltvHELAREgnmttatnhv 272
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY-----CELAEL---------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 273 rnlikALETREPENPSLHLKKIIvvsrlcgshqvilglvcsfiertfMATPSYVHVATELGYLFILKNQVKEALLWYSEA 352
Cdd:COG2956 154 -----YLEQGDYDEAIEALEKAL------------------------KLDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578805742 353 MKLDKDGMAGLTGIILCHILEGHLEEAeyrLEFLKEVQKSLGKSEVLIFLQALLMsrKHKGEEETTALLKEAVELH 428
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLE--RKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
889-1227 |
5.61e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 73.61 E-value: 5.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 969 AINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIpafFELAKKVSSRVPLEPGFNYCRGIYCWHIGQPNEALKFLNKAR 1048
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA---IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1049 KdstwgqsaiyhmvqicLNPDNevvggeafenqgaesksntcsymekkeleqqgvstaekllrefyphsdssqtqLRLLQ 1128
Cdd:COG2956 172 K----------------LDPDC-----------------------------------------------------ARALL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1129 GLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAktpwvlsEAEDLEKSWLLLADI 1208
Cdd:COG2956 183 LLAELYLEQG-DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLLALADL 254
|
330
....*....|....*....
gi 578805742 1209 YCQGSKFDLALELLRRCVQ 1227
Cdd:COG2956 255 LERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
664-1302 |
7.63e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 7.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLLLGDALMSILEPEKALEV 743
Cdd:TIGR02917 33 LQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 744 YDEAYRQNPHDAS--LASRiGHAYVKAHQYTEAIEYYEAAQKINgQDFLCCDLGKLLLKLKKVN--KAEKVLKQALEHDI 819
Cdd:TIGR02917 113 LPGKTLLDDEGAAelLALR-GLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRfdEARALIDEVLTADP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 820 VQdipsmmndVKCLLLLAKV-YKSHKKEAVIETLNKALDLQSR------ILKRVPLEQPEMIPSQKQLAASICI----QF 888
Cdd:TIGR02917 191 GN--------VDALLLKGDLlLSLGNIELALAAYRKAIALRPNniavllALATILIEAGEFEEAEKHADALLKKapnsPL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 889 AEHYLA-----EKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHC-AILLQTEQNHeTASVLMADLMFR 962
Cdd:TIGR02917 263 AHYLKAlvdfqKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLnQILKYAPNSH-QARRLLASIQLR 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 963 KQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFElakKVSSRVPLEPGFNYCRGIYCWHIGQPNEALK 1042
Cdd:TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA---KATELDPENAAARTQLGISKLSQGDPSEAIA 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1043 FL---------------------------NKARK------DSTWGQSAIYH-MVQICLNPDNEVVGGEAFE-----NQG- 1082
Cdd:TIGR02917 419 DLetaaqldpelgradlllilsylrsgqfDKALAaakkleKKQPDNASLHNlLGAIYLGKGDLAKAREAFEkalsiEPDf 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1083 AESKSNTCSYMEKKELEQQGVSTAEKLLREfYPHSdssqtqLRLLQGLCRLATReKANMEAALGSFIQIAQAEKDSVPAL 1162
Cdd:TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKN------LRAILALAGLYLR-TGNEEEAVAWLEKAAELNPQEIEPA 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1163 LALAQAYVFLKQIPKARMQLKRLAKTpwvlseAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFI 1242
Cdd:TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADA------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578805742 1243 MEKEQSYKDAVTNYK--LAWKySHHANPAIGfkLAFNYLKDKKFVEAIEICNDVLREHPDYP 1302
Cdd:TIGR02917 645 YAVMKNYAKAITSLKraLELK-PDNTEAQIG--LAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1136-1318 |
1.76e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.37 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1136 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKF 1215
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDW 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1216 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYLKDKKFVEAIEICNDVL 1295
Cdd:COG2956 127 EKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL-LLLAELYLEQGDYEEAIAALERAL 205
|
170 180
....*....|....*....|...
gi 578805742 1296 REHPDYPKIREEILEKARRSLRP 1318
Cdd:COG2956 206 EQDPDYLPALPRLAELYEKLGDP 228
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1092-1317 |
1.02e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.06 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1092 YMEKKELEQqGVSTAEKLLrefyphsDSSQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVF 1171
Cdd:COG2956 52 YRRRGEYDR-AIRIHQKLL-------ERDPDRAEALLELAQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEIYEQ 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1172 LKQIPKARMQLKRLAKtpwvlsEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKD 1251
Cdd:COG2956 123 EGDWEKAIEVLERLLK------LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578805742 1252 AVTNYKLAWKYSHHANPAIgFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKI--------REEILEKARRSLR 1317
Cdd:COG2956 197 AIAALERALEQDPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLlaladlleRKEGLEAALALLE 269
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
955-1298 |
2.04e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.29 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 955 LMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEdipaffelakkvssrvplepgfnycrgiycwhi 1034
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD--------------------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1035 gqpnEALKFLNKARKDSTWGQSAIYHMVQIclnpdnevvggeafenqgaesksntcsYMEKKELEQqgvstAEKLLREFy 1114
Cdd:COG2956 60 ----RAIRIHQKLLERDPDRAEALLELAQD---------------------------YLKAGLLDR-----AEELLEKL- 102
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1115 phSDSSQTQLRLLQGLCRLATREKaNMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSE 1194
Cdd:COG2956 103 --LELDPDDAEALRLLAEIYEQEG-DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK------ALKL 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1195 AEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKysHHANPAIGFKL 1274
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE--LDPSDDLLLAL 251
|
330 340
....*....|....*....|....
gi 578805742 1275 AFNYLKDKKFVEAIEICNDVLREH 1298
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
881-1012 |
8.65e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 8.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 881 AASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLM 960
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 578805742 961 FRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFELAKK 1012
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
475-680 |
9.40e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 9.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 475 LLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELG 554
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 555 VSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHE 634
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQ----------------DP-DYLPALPRLAELYEKLGDPEE 230
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 578805742 635 ATKVMQDTINEFGGTPEENRItianVDLVLSKGNVDVALNMLRNIL 680
Cdd:COG2956 231 ALELLRKALELDPSDDLLLAL----ADLLERKEGLEAALALLERQL 272
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
889-983 |
1.35e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....*
gi 578805742 969 AINLYHQVLEKAPDN 983
Cdd:COG4235 104 AIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
476-594 |
1.44e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 476 LKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGV 555
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 578805742 556 SHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
915-1049 |
2.06e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 2.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 915 DNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLL 994
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 578805742 995 RRSGKLEDIPAFFELAKKVSsrvPLEPGFNYCRGIYCWHIGQPNEALKFLNKARK 1049
Cdd:COG4783 83 LKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
874-1010 |
4.57e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 874 IPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS 953
Cdd:COG3914 70 AAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 578805742 954 VLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFELA 1010
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
686-861 |
6.37e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.18 E-value: 6.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 686 YMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSL-LLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHA 764
Cdd:COG0457 7 DAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAEALyNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 765 YVKAHQYTEAIEYYEAAQKINGQDFLCCD-LGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmNDVKCLLLLAKVY-KS 842
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALeKL 157
|
170
....*....|....*....
gi 578805742 843 HKKEAVIETLNKALDLQSR 861
Cdd:COG0457 158 GRYEEALELLEKLEAAALA 176
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
807-1304 |
8.59e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.56 E-value: 8.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 807 AEKVLKQALEHDivqdipsmMNDVKCLLLLAKVYKSHKKeavietLNKALDLqsrilkrvpLEQPEMIPSQKQLAASICI 886
Cdd:TIGR02917 75 AEKELRKALSLG--------YPKNQVLPLLARAYLLQGK------FQQVLDE---------LPGKTLLDDEGAAELLALR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 887 QFAehYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKH 966
Cdd:TIGR02917 132 GLA--YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 967 EAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKledipafFELAKK----VSSRVPLEPGFNYCR--------------- 1027
Cdd:TIGR02917 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGE-------FEEAEKhadaLLKKAPNSPLAHYLKalvdfqkknyedare 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1028 -------------------GIYCWHIGQPNEALKFLNKARKDSTWGQSAIYHMVQICLN---PDNEVVGGEAFENQgAES 1085
Cdd:TIGR02917 283 tlqdalksapeylpalllaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRlgrVDEAIATLSPALGL-DPD 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1086 KSNTCS-----YMEKKELEQqgvstAEKLL---REFYPHSDSSQTQLrllqGLCRLATREKanmEAALGSFIQIAQAEKD 1157
Cdd:TIGR02917 362 DPAALSllgeaYLALGDFEK-----AAEYLakaTELDPENAAARTQL----GISKLSQGDP---SEAIADLETAAQLDPE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1158 SVPALLALAQAYVFLKQIPKARMQLKRL-AKTPwvlseaeDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAY 1236
Cdd:TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLeKKQP-------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1237 EYMGFIMEKE-------QSYKDAVTNY--------KLAWKYSHHANP--AIGF----------------KLAFNYLKDKK 1283
Cdd:TIGR02917 503 ANLARIDIQEgnpddaiQRFEKVLTIDpknlrailALAGLYLRTGNEeeAVAWlekaaelnpqeiepalALAQYYLGKGQ 582
|
570 580
....*....|....*....|.
gi 578805742 1284 FVEAIEICNDVLREHPDYPKI 1304
Cdd:TIGR02917 583 LKKALAILNEAADAAPDSPEA 603
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
487-594 |
9.70e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---PDNAE 181
|
90 100
....*....|....*....|....*...
gi 578805742 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
664-788 |
1.19e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 664 LSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALE 742
Cdd:COG4783 15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALA 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 578805742 743 VYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-594 |
6.22e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 6.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 492 ALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIK 571
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNL 78
|
90 100
....*....|....*....|...
gi 578805742 572 ARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKL 101
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
689-818 |
6.57e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 6.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 689 AREKMANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVK 767
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFnLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 578805742 768 AHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHD 818
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAeALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
748-1023 |
8.28e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.01 E-value: 8.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 748 YRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKkvnkAEKVLKQALEHDIVQDIPSMM 827
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAA----AAALLALAAGEAAAAAAALLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 828 NDVKCLLLLAKVYKSHKKEAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAAsiciqfaeHYLAEKEYDKAVQSYKD 907
Cdd:COG3914 77 LAALLELAALLLQALGRYEEALALYRRALALN-----------PDNAEALFNLGN--------LLLALGRLEEALAALRR 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 908 VFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVL 987
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
250 260 270
....*....|....*....|....*....|....*.
gi 578805742 988 HKLIDLLRRSGKLEDIPAFFELAKKVSSRVPLEPGF 1023
Cdd:COG3914 218 SNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
487-594 |
1.54e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD---PDNPE 86
|
90 100
....*....|....*....|....*...
gi 578805742 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
614-789 |
3.78e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.70 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 614 QRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKM 693
Cdd:COG3914 39 AALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 694 ANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYT 772
Cdd:COG3914 119 GNLLLA-LGRLEEALAALRRALALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197
|
170
....*....|....*..
gi 578805742 773 EAIEYYEAAQKINGQDF 789
Cdd:COG3914 198 EAIAAYRRALELDPDNA 214
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
688-818 |
7.54e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 7.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 688 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 766
Cdd:COG4783 5 EALYALAQALLL-AGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 578805742 767 KAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEHD 818
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
739-858 |
1.49e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 739 KALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALEH 817
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNaDALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 578805742 818 DivqdiPsmmNDVKCLLLLAKVY-KSHKKEAVIETLNKALDL 858
Cdd:COG4235 81 D-----P---DNPEALYLLGLAAfQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1159-1301 |
1.58e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.73 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1159 VPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEY 1238
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEK------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578805742 1239 MGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDY 1301
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-250 |
2.28e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.47 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRY---EEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1106-1305 |
2.33e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.38 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1106 AEKLLREFYPHSDSSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRL 1185
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1186 aktpwvLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHH 1265
Cdd:COG3914 105 ------LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALEL-DP 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 578805742 1266 ANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR 1305
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
725-788 |
4.67e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.39 E-value: 4.67e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578805742 725 LLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
828-1008 |
5.46e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 5.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 828 NDVKCLLLLAKVYKSHKK-EAVIETLNKALDLQsrilkrvpleqPEMIPSQKQLAASiciqfaehYLAEKEYDKAVQSYK 906
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRyEEAIEDYEKALELD-----------PDDAEALYNLGLA--------YLRLGRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 907 DVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLV 986
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
170 180
....*....|....*....|..
gi 578805742 987 LHKLIDLLRRSGKLEDIPAFFE 1008
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLE 168
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
751-1005 |
5.51e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 751 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDF-LCCDLGKLLLKLKKVNKAEKVLKQALEHDIvqdipsmmND 829
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP--------DD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 830 VKCLLLLAKVY-KSHKKEAVIETLNKALDLQSRIlkrvpleqpemipsqkqlaASICIQFAEHYLAEKEYDKAVQSYKDV 908
Cdd:COG0457 76 AEALNNLGLALqALGRYEEALEDYDKALELDPDD-------------------AEALYNLGLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 909 FSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLH 988
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
250
....*....|....*..
gi 578805742 989 KLIDLLRRSGKLEDIPA 1005
Cdd:COG0457 217 AALAELLLLALALLLAL 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
488-640 |
6.49e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 6.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 488 KAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLY 567
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEA 148
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578805742 568 HLIKARALNKAGDYPEAIKTLKMVIKLpalkkeegrkflrpsvQPsQRASILLELVEALRLNGELHEATKVMQ 640
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALEL----------------DP-DNAEALNNLGNALQDLGRLEEAIAAYR 204
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
672-788 |
1.52e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 672 ALNMLRNILPKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQ 750
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLR-LGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*...
gi 578805742 751 NPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD 788
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
900-1002 |
2.98e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.08 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 900 KAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEK 979
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|...
gi 578805742 980 APDNFLVLHKLIDLLRRSGKLED 1002
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAE 103
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1136-1317 |
3.08e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1136 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKF 1215
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDAEALNNLGLALQALGRY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1216 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAFNYLKDKKFVEAIEICNDVL 1295
Cdd:COG0457 93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD-DADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180
....*....|....*....|..
gi 578805742 1296 REHPDYPKIREEILEKARRSLR 1317
Cdd:COG0457 172 AAALAALLAAALGEAALALAAA 193
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
112-247 |
4.46e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 4.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 112 ALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYF 190
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDL---DEAIVLLHEALElDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 578805742 191 MMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESN 247
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1140-1259 |
4.72e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1140 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLaktpwvLSEAEDLEKSWLLLADIYCQGSKFDLAL 1219
Cdd:COG4783 19 DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPEARLNLGLALLKAGDYDEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 578805742 1220 ELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1259
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
889-983 |
4.81e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 4.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 889 AEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEA 968
Cdd:COG4783 45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
90
....*....|....*
gi 578805742 969 AINLYHQVLEKAPDN 983
Cdd:COG4783 125 AIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
486-544 |
5.51e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 5.51e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 578805742 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:COG4235 43 ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
616-791 |
5.61e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 50.76 E-value: 5.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 616 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 694
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLAlGRLEEALAALRRALALNPDFAEAYLNLG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 695 NIyLQTLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 773
Cdd:COG3914 154 EA-LRRLGRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
170
....*....|....*...
gi 578805742 774 AIEYYEAAQKINGQDFLC 791
Cdd:COG3914 233 YDRFEELLAALARGPSEL 250
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-250 |
7.63e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 7.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 43 FFKAYGVLKEEHIQDAISDLES-IRHHPD-VSLCSTMALIYAhKRCEIidREAIQELEYSLKeiRKTVSGTALYYAGLFL 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEaLELDPEtVEAHLALGNLYR-RRGEY--DRAIRIHQKLLE--RDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 121 WLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLEQGIQ-DTKDVLGLMGKAMYFMMQQNYSEA 199
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW---EKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 578805742 200 LEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDA 250
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
616-790 |
1.07e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.46 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 616 ASILLELVEALRLNGELHEATKVMQDTINEFGGTPEenriTIANVDLVLSK-GNVDVALNMLRNILPKQSCYMEAREKMA 694
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAE----ALYNLGLAYLRlGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 695 NIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTE 773
Cdd:COG0457 84 LALQA-LGRYEEALEDYDKALELDPDDAEALYnLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170
....*....|....*..
gi 578805742 774 AIEYYEAAQKINGQDFL 790
Cdd:COG0457 163 ALELLEKLEAAALAALL 179
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1149-1299 |
1.30e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1149 IQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQY 1228
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578805742 1229 NKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYShHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHP 1299
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS-PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-594 |
1.49e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.08 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD---PDDA 110
|
90 100
....*....|....*....|....*....
gi 578805742 566 LYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 111 EALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
738-821 |
2.03e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 738 EKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQD-FLCCDLGKLLLKLKKVNKAEKVLKQALE 816
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
....*
gi 578805742 817 HDIVQ 821
Cdd:COG5010 151 TSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1143-1259 |
2.19e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1143 AALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLALELL 1222
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEK------ALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 578805742 1223 RRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLA 1259
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1140-1227 |
2.36e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1140 NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRlaktpwVLSEAEDLEKSWLLLADIYCQGSKFDLAL 1219
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER------ALALDPDNPEALYLLGLAAFQQGDYAEAI 105
|
....*...
gi 578805742 1220 ELLRRCVQ 1227
Cdd:COG4235 106 AAWQKLLA 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
943-1051 |
2.86e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 943 LQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGkleDIPAFFELAKKVSSRVPLEPG 1022
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG---DTEEAEELLERALALDPDNPE 86
|
90 100
....*....|....*....|....*....
gi 578805742 1023 FNYCRGIYCWHIGQPNEALKFLNKARKDS 1051
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
489-598 |
3.09e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 489 AAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYH 568
Cdd:COG5010 49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAY 125
|
90 100 110
....*....|....*....|....*....|
gi 578805742 569 LIKARALNKAGDYPEAIKTLKMVIKLPALK 598
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
486-589 |
4.05e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGM---CF-HCLELgVSHNFQV 561
Cdd:COG3914 138 ALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEaiaAYrRALEL-DPDNADA 216
|
90 100
....*....|....*....|....*...
gi 578805742 562 RDHPLYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG3914 217 HSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
517-594 |
4.29e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 4.29e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578805742 517 LQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-594 |
5.75e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 487 VKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPL 566
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDDAE 77
|
90 100
....*....|....*....|....*...
gi 578805742 567 YHLIKARALNKAGDYPEAIKTLKMVIKL 594
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALEL 105
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1202-1308 |
7.20e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1202 WLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYsHHANPAIGFKLAFNYLKD 1281
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 578805742 1282 KKFVEAIEICNDVLREHPDYPKIREEI 1308
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1197-1305 |
7.55e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.77 E-value: 7.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1197 DLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHaNPAIGFKLAF 1276
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-DAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 578805742 1277 NYLKDKKFVEAIEICNDVLREHPDYPKIR 1305
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
892-982 |
8.23e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 8.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQhCAILLQTEQNHETASVLMADLMFRKQKHEAAIN 971
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 578805742 972 LYHQVLEKAPD 982
Cdd:COG3063 81 YLERALELDPS 91
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
499-784 |
1.22e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 45.67 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 499 LMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELgvSHNFQVRDHPLYHLIKARALNKA 578
Cdd:COG3071 21 LEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQ--ALELAPEAELAVLLTRAELLLDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 579 GDYPEAIKTLKmviklpALKKEEGRkflrpsvqpsqRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEE--NRIT 656
Cdd:COG3071 99 GQAEQALATLE------ALRAGAPR-----------HPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEaqALER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 657 IANVDLVLSKGNVDVALNMLRNILPKQSCYMEArekMANIYLQTLRDRRLYIRCYRELCEHLP-GPHTSL--LLGDALMS 733
Cdd:COG3071 162 RAYLGLLRQAARDAEALKALWKALPRAERRDPE---LAAAYARALIALGDHDEAERLLREALKrQWDPRLvrLYGRLQGG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 578805742 734 ilEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKI 784
Cdd:COG3071 239 --DPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL 287
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
688-785 |
1.27e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 688 EAREKMANIYLQtLRDRRLYIRCYRELCEHLPG-PHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYV 766
Cdd:COG5010 55 AIESPSDNLYNK-LGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133
|
90
....*....|....*....
gi 578805742 767 KAHQYTEAIEYYEAAQKIN 785
Cdd:COG5010 134 SLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
508-594 |
1.29e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 508 GELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHcLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKT 587
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 578805742 588 LKMVIKL 594
Cdd:COG3063 82 LERALEL 88
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
736-818 |
1.52e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 736 EPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEyYEAAQKINGQDFLC-CDLGKLLLKLKKVNKAEKVLKQA 814
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAlLNLAELLLELGDYDEALAYLERA 85
|
....
gi 578805742 815 LEHD 818
Cdd:COG3063 86 LELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
852-981 |
1.68e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 852 LNKALDLQSRILKRVPLEQPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGH 931
Cdd:COG5010 24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 578805742 932 LDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAP 981
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
500-635 |
1.79e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 45.57 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 500 MAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLElgvshnfqvrdhplyhlikaRALNKAG 579
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE--------------------RVEEQDP 245
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 578805742 580 DY-PEAIKTLKMVIKlpALKK-EEGRKFLRPSVQPSQRASILLELVEALRLNGELHEA 635
Cdd:PRK11788 246 EYlSEVLPKLMECYQ--ALGDeAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1183-1312 |
2.24e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1183 KRLAKTPwvlseaEDLEkSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKY 1262
Cdd:COG4235 8 QALAANP------NDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 578805742 1263 sHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIR--EEILEKA 1312
Cdd:COG4235 81 -DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARllEASIAEA 131
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
486-589 |
2.78e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 486 VVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHP 565
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDDA 144
|
90 100
....*....|....*....|....
gi 578805742 566 LYHLIKARALNKAGDYPEAIKTLK 589
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1201-1310 |
5.11e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1201 SWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIgFKLAFNYLK 1280
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLK 88
|
90 100 110
....*....|....*....|....*....|
gi 578805742 1281 DKKFVEAIEICNDVLREHPDYPKIREEILE 1310
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
892-1006 |
5.98e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.64 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 892 YLAEKEYDKAVQSYKDVFSYLPTDNKVML-----ELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKH 966
Cdd:PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 578805742 967 EAAINLYHQVLEKAPDNF-LVLHKLIDLLRRSGKLEDIPAF 1006
Cdd:PRK11788 231 AAAIEALERVEEQDPEYLsEVLPKLMECYQALGDEAEGLEF 271
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
892-982 |
7.15e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 892 YLAEKEYDKAVQSYKDVFSYLPTDN---KVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETAS---VLMADLMFRKQK 965
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGD 82
|
90
....*....|....*..
gi 578805742 966 HEAAINLYHQVLEKAPD 982
Cdd:COG1729 83 YDKARATLEELIKKYPD 99
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
521-822 |
9.45e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 9.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 521 LELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNfqvRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLpalkke 600
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 601 egrkflrpsvQPsQRASILLELVEALRLNGELHEAtkvmqdtinefggtpeenritianvdlvlskgnvdvaLNMLRNIL 680
Cdd:COG0457 72 ----------DP-DDAEALNNLGLALQALGRYEEA-------------------------------------LEDYDKAL 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 681 PKQSCYMEAREKMANIYLQtLRDRRLYIRCYRELCEHLPGPHTSLL-LGDALMSILEPEKALEVYDEAYRQNPHDASLAS 759
Cdd:COG0457 104 ELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYnLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578805742 760 RIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALEHDIVQD 822
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
895-959 |
1.55e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 1.55e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578805742 895 EKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADL 959
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
92-201 |
2.18e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 92 EAIQELEYSLKEIRKtvSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYLE 171
Cdd:COG4235 1 EAIARLRQALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT---EEAEELLE 75
|
90 100 110
....*....|....*....|....*....|.
gi 578805742 172 QGIQ-DTKDVLGLMGKAMYFMMQQNYSEALE 201
Cdd:COG4235 76 RALAlDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
1100-1232 |
2.19e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 42.10 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1100 QQGVSTAEKLLRefyphSDSSQTQLRLLQGLCRLATREKA--NMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPK 1177
Cdd:PRK11788 158 QKAIDVAERLEK-----LGGDSLRVEIAHFYCELAQQALArgDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 578805742 1178 ARMQLKRLAKT-PWVLSEAEDlekswlLLADIYCQGSKFDLALELLRRCVQYNKSC 1232
Cdd:PRK11788 233 AIEALERVEEQdPEYLSEVLP------KLMECYQALGDEAEGLEFLRRALEEYPGA 282
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
507-544 |
2.46e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.56 E-value: 2.46e-03
10 20 30
....*....|....*....|....*....|....*...
gi 578805742 507 SGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNF 544
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRL 38
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
91-244 |
2.59e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 91 REAIQELEYSLKEirKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKISRGFREAYVLRGWVDLTSDKPhtaKKAIEYL 170
Cdd:COG2956 127 EKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDY---EEAIAAL 201
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578805742 171 EQGI-QDTKDVLGLMGKAMYFMMQQNYSEALEVVNQItVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKD 244
Cdd:COG2956 202 ERALeQDPDYLPALPRLAELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
959-1049 |
4.16e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 959 LMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFfelaKKVSSRVPLEPGFNYCRGIYCWHIGQPN 1038
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL----EKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|.
gi 578805742 1039 EALKFLNKARK 1049
Cdd:COG3063 77 EALAYLERALE 87
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
886-993 |
4.98e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 40.95 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 886 IQFAEHYLAEKEYDKAVQSYKDVF----SYLPtdnkvmLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVL--MADL 959
Cdd:PRK11788 218 ILLGDLALAQGDYAAAIEALERVEeqdpEYLS------EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLlaLAQL 291
|
90 100 110
....*....|....*....|....*....|....
gi 578805742 960 MFRKQKHEAAINLYHQVLEKAPdNFLVLHKLIDL 993
Cdd:PRK11788 292 LEEQEGPEAAQALLREQLRRHP-SLRGFHRLLDY 324
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1136-1311 |
5.15e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.22 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1136 REKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEkswlllADIYCQGSKF 1215
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK------ALVDFQKKNY 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 1216 DLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIGFkLAFNYLKDKKFVEAIEICNDVL 1295
Cdd:TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPAL 356
|
170 180
....*....|....*....|
gi 578805742 1296 REHPDYPKIR----EEILEK 1311
Cdd:TIGR02917 357 GLDPDDPAALsllgEAYLAL 376
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
925-1016 |
5.80e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 5.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 925 LYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINlYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIP 1004
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 578805742 1005 AFFELAKKVSSR 1016
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
711-785 |
7.93e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 7.93e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578805742 711 YRELCEHL---PGPHTSLLLGDALMSILEPEKALEVYDEAY-RQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKIN 785
Cdd:COG4700 76 LRELEKALefaDTVQNRVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKN 154
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
925-1010 |
8.98e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578805742 925 LYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIP 1004
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
....*.
gi 578805742 1005 AFFELA 1010
Cdd:COG5010 143 AALQRA 148
|
|
| |
