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Conserved domains on  [gi|767902739|ref|XP_006710457|]
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interferon lambda receptor 1 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
JAK1bd_box_IFNLR1 cd21910
JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins; ...
 218-268 5.58e-28

JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins; IFNLR1, also called IFN-lambda receptor 1, IFN-lambda-R1, cytokine receptor class-II member 12, cytokine receptor family 2 member 12, CRF2-12, interleukin-28 receptor subunit alpha, IL-28 receptor subunit alpha, IL-28R-alpha, IL-28RA, likely interleukin, or cytokine receptor 2 (LICR2), is a class II cytokine receptor that, together with IL10RB, forms a dimer. The IFNLR1/IL10RB dimer is a receptor for the cytokine ligands IFNL2 and IFNL3 and mediates their antiviral activity. The ligand/receptor complex stimulates the activation of the JAK/STAT signaling pathway leading to the expression of IFN-stimulated genes (ISG) which contribute to the antiviral state. IFNLR1 determines the cell type specificity of the lambda interferon action. It plays a significant role in the antiviral immune defense in the intestinal epithelium. This model corresponds to IFNLR1 box domain which consists of box1 and box2. Mutations within the box1 and box2 motifs disrupt Janus kinase (JAK) binding as well as signaling.


:

Pssm-ID: 439315  Cd Length: 51  Bit Score: 105.27  E-value: 5.58e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767902739 218 WKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELT 268
Cdd:cd21910    1 WKNFTGNPWFQRAKMPQALDFSGYRHPVATLQPSRPESVDDLFLCPQKELT 51
Tissue_fac super family cl47630
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 29-80 1.99e-08

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


The actual alignment was detected with superfamily member pfam01108:

Pssm-ID: 460067  Cd Length: 107  Bit Score: 52.00  E-value: 1.99e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 767902739   29 HISPTRRRWREVEECAGTKELLCSMMCLKKqDLYNKFKGRVRTVSPSSKSPW 80
Cdd:pfam01108  57 YKIYGSGDWKNVPNCTNITRTECDLTDETS-DLTETYYARVRAVSGGGTSSW 107
 
Name Accession Description Interval E-value
JAK1bd_box_IFNLR1 cd21910
JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins; ...
 218-268 5.58e-28

JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins; IFNLR1, also called IFN-lambda receptor 1, IFN-lambda-R1, cytokine receptor class-II member 12, cytokine receptor family 2 member 12, CRF2-12, interleukin-28 receptor subunit alpha, IL-28 receptor subunit alpha, IL-28R-alpha, IL-28RA, likely interleukin, or cytokine receptor 2 (LICR2), is a class II cytokine receptor that, together with IL10RB, forms a dimer. The IFNLR1/IL10RB dimer is a receptor for the cytokine ligands IFNL2 and IFNL3 and mediates their antiviral activity. The ligand/receptor complex stimulates the activation of the JAK/STAT signaling pathway leading to the expression of IFN-stimulated genes (ISG) which contribute to the antiviral state. IFNLR1 determines the cell type specificity of the lambda interferon action. It plays a significant role in the antiviral immune defense in the intestinal epithelium. This model corresponds to IFNLR1 box domain which consists of box1 and box2. Mutations within the box1 and box2 motifs disrupt Janus kinase (JAK) binding as well as signaling.


Pssm-ID: 439315  Cd Length: 51  Bit Score: 105.27  E-value: 5.58e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767902739 218 WKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELT 268
Cdd:cd21910    1 WKNFTGNPWFQRAKMPQALDFSGYRHPVATLQPSRPESVDDLFLCPQKELT 51
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 29-80 1.99e-08

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 52.00  E-value: 1.99e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 767902739   29 HISPTRRRWREVEECAGTKELLCSMMCLKKqDLYNKFKGRVRTVSPSSKSPW 80
Cdd:pfam01108  57 YKIYGSGDWKNVPNCTNITRTECDLTDETS-DLTETYYARVRAVSGGGTSSW 107
 
Name Accession Description Interval E-value
JAK1bd_box_IFNLR1 cd21910
JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins; ...
 218-268 5.58e-28

JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1) and similar proteins; IFNLR1, also called IFN-lambda receptor 1, IFN-lambda-R1, cytokine receptor class-II member 12, cytokine receptor family 2 member 12, CRF2-12, interleukin-28 receptor subunit alpha, IL-28 receptor subunit alpha, IL-28R-alpha, IL-28RA, likely interleukin, or cytokine receptor 2 (LICR2), is a class II cytokine receptor that, together with IL10RB, forms a dimer. The IFNLR1/IL10RB dimer is a receptor for the cytokine ligands IFNL2 and IFNL3 and mediates their antiviral activity. The ligand/receptor complex stimulates the activation of the JAK/STAT signaling pathway leading to the expression of IFN-stimulated genes (ISG) which contribute to the antiviral state. IFNLR1 determines the cell type specificity of the lambda interferon action. It plays a significant role in the antiviral immune defense in the intestinal epithelium. This model corresponds to IFNLR1 box domain which consists of box1 and box2. Mutations within the box1 and box2 motifs disrupt Janus kinase (JAK) binding as well as signaling.


Pssm-ID: 439315  Cd Length: 51  Bit Score: 105.27  E-value: 5.58e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767902739 218 WKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELT 268
Cdd:cd21910    1 WKNFTGNPWFQRAKMPQALDFSGYRHPVATLQPSRPESVDDLFLCPQKELT 51
JAK1bd_box_IFNLR1-like cd21844
JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1), interleukin-10 ...
 219-267 1.18e-24

JAK1 binding box domain found in interferon lambda receptor 1 (IFNLR1), interleukin-10 receptor subunit alpha (IL10RA) and similar proteins; This family includes two class II cytokine receptors, IFNLR1 and IL10RA. IFNLR1 (also called IFN-lambda receptor 1, IFN-lambda-R1, cytokine receptor class-II member 12, cytokine receptor family 2 member 12, CRF2-12, interleukin-28 receptor subunit alpha, IL-28 receptor subunit alpha, IL-28R-alpha, IL-28RA, likely interleukin, cytokine receptor 2 or LICR2), together with IL10RB, forms a dimer. The IFNLR1/IL10RB dimer is a receptor for the cytokine ligands IFNL2 and IFNL3, and mediates their antiviral activity. The ligand/receptor complex stimulates the activation of the JAK/STAT signaling pathway, leading to expression of IFN-stimulated genes (ISG), which contribute to the antiviral state. IFNLR1 determines the cell type specificity of the lambda interferon action. It plays a significant role in the antiviral immune defense in the intestinal epithelium. IL10RA (also called IL-10 receptor subunit alpha, IL-10R subunit alpha, IL-10RA, CDw210a, interleukin-10 receptor subunit 1, IL-10R subunit 1, or IL-10R1) is a cell surface receptor for the cytokine IL10 that participates in IL10-mediated anti-inflammatory functions, limiting excessive tissue disruption caused by inflammation. Both, IFNLR1 and IL10RA, contain a box domain consisting of box1 and box2. The cytokine receptor box1 motif is critical for JAK kinase binding and activation.


Pssm-ID: 439313  Cd Length: 49  Bit Score: 96.34  E-value: 1.18e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 767902739 219 KTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKEL 267
Cdd:cd21844    1 KNLLGNPWFQRAKMPQALDFSGYRHPVATLQPSRPESQDDLFLCPQKEL 49
Tissue_fac pfam01108
Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type ...
 29-80 1.99e-08

Tissue factor; This family is found in metazoa, and is very similar to the fibronectin type III domain. The family is found in cytokine receptors, interleukin and interferon receptors and coagulation factor III proteins. It occurs multiple times, as does fn3, family pfam00041.


Pssm-ID: 460067  Cd Length: 107  Bit Score: 52.00  E-value: 1.99e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 767902739   29 HISPTRRRWREVEECAGTKELLCSMMCLKKqDLYNKFKGRVRTVSPSSKSPW 80
Cdd:pfam01108  57 YKIYGSGDWKNVPNCTNITRTECDLTDETS-DLTETYYARVRAVSGGGTSSW 107
JAK1bd_box_IL10RA cd21909
JAK1 binding box domain found in interleukin-10 receptor subunit alpha (IL10RA) and similar ...
 219-255 4.71e-04

JAK1 binding box domain found in interleukin-10 receptor subunit alpha (IL10RA) and similar proteins; IL10RA, also called IL-10 receptor subunit alpha, IL-10R subunit alpha, IL-10RA, CDw210a, interleukin-10 receptor subunit 1, IL-10R subunit 1, or IL-10R1, is a cell surface receptor for the cytokine IL10 that participates in IL10-mediated anti-inflammatory functions, limiting excessive tissue disruption caused by inflammation. This model corresponds to IL10RA box domain which consists of box1 and box2.


Pssm-ID: 439314  Cd Length: 52  Bit Score: 38.22  E-value: 4.71e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 767902739 219 KTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPES 255
Cdd:cd21909    2 CLALQLYVRRRKKLPSVLLFKKPSPFIFISQRPSPET 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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