|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-775 |
1.34e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 37 ESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAWLEESAHKDSD 116
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 117 SLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQdfRKIHLERQELIQQWENTIEQMQR 196
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA--RLERLEDRRERLQQEIEELLKKL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 197 RDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSK-------CRMDYQRHEG------- 262
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqarldsLERLQENLEGfsegvka 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 263 ---NRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLkhhneVVKHKLKMITEKTLSIEEKATNMED 339
Cdd:TIGR02168 511 llkNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKK-----AIAFLKQNELGRVTFLPLDSIKGTE 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 340 MLKEEEKGLKEVEVQLGIVKDvLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQ 419
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKD-LVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGG 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 420 QVERRMSRL--KGEI--NSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLhndlyfikksngknNDEKESLMNKISE 495
Cdd:TIGR02168 665 SAKTNSSILerRREIeeLEEKIEELEEKIAELEKALAELRKELEELEEELEQL--------------RKELEELSRQISA 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 496 LNLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVhkamLTSQIR 575
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALD 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 576 CVEQQRKTMSSEFHERLSKIDKLKNRYEiLTVVMLPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKINKAEKEIYAL 655
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIA-ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 656 QNTLQVLNScnsnykqsfkkvtpssdeyaLKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANNAKEKL 735
Cdd:TIGR02168 886 EEALALLRS--------------------ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 568920977 736 TEKQTLAFqlrketEEQKPKLQRITKQCGRLRREIRILKQ 775
Cdd:TIGR02168 946 SEEYSLTL------EEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-718 |
4.18e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 21 NQENKILEDQSLYkARESEIESEEHFKaiaerelgrvknETQLLEKEMAIIRERKSQ----MENNIFKTTQKLDDLKC-- 94
Cdd:pfam15921 95 NESNELHEKQKFY-LRQSVIDLQTKLQ------------EMQMERDAMADIRRRESQsqedLRNQLQNTVHELEAAKClk 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 95 ------------QMNWDQQALEAWLEE--SAHKDSDSLTLQKYSQQDDNK---IRALTLQLEKLTMEYNEKRKLLDSELT 157
Cdd:pfam15921 162 edmledsntqieQLRKMMLSHEGVLQEirSILVDFEEASGKKIYEHDSMStmhFRSLGSAISKILRELDTEISYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 158 eTLSAQLELDKAAQDfRKIHLerqeLIQQWENTIEQMQRrDQEIDncALALSRIKQEAREKEGVVKEKIKFLENEVEN-N 236
Cdd:pfam15921 242 -PVEDQLEALKSESQ-NKIEL----LLQQHQDRIEQLIS-EHEVE--ITGLTEKASSARSQANSIQSQLEIIQEQARNqN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 237 IEYERKISVAERKVSKCRMDYQrhEGNRSqLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVV 316
Cdd:pfam15921 313 SMYMRQLSDLESTVSQLRSELR--EAKRM-YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 317 KHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQ 396
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 397 LHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEEK--QALEAKILELKKTMDEKKSTLSLLESQIKKLHN---D 471
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtE 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 472 LYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQq 551
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVS- 628
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 552 lgkDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYYVIKAAQEK 631
Cdd:pfam15921 629 ---DLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 632 EELQREGDSLDA-----------------KINKAEKEIYALQNTLQVLNSC--NSNYKQSFKKVTPSSDEYALKIQLEEQ 692
Cdd:pfam15921 706 SELEQTRNTLKSmegsdghamkvamgmqkQITAKRGQIDALQSKIQFLEEAmtNANKEKHFLKEEKNKLSQELSTVATEK 785
|
730 740
....*....|....*....|....*.
gi 568920977 693 KRTADErYRCKQRQIRELQEDIQSME 718
Cdd:pfam15921 786 NKMAGE-LEVLRSQERRLKEKVANME 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
246-800 |
5.04e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 5.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 246 AERKVSKCRMDYQRHEGNRSQLKDELDTLKTTlNRTSSDLQALRKNISKVKKDIFdeTLRLQKLKHHNEVVKHKLKMITE 325
Cdd:TIGR02168 177 TERKLERTRENLDRLEDILNELERQLKSLERQ-AEKAERYKELKAELRELELALL--VLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 326 KTLSIEEKATNMEDMLKEEEKGLKEVEVQLgivkDVLFKKVQELQNEIAKekaLVSEIEGTRSSLKHLNKQLHKLD--FE 403
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEI----EELQKELYALANEISR---LEQQKQILRERLANLERQLEELEaqLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 404 TLKQQEIMYSQDFyiQQVERRMSRLKGEINS---------EEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYF 474
Cdd:TIGR02168 327 ELESKLDELAEEL--AELEEKLEELKEELESleaeleeleAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 475 IKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMMIEDnlLKLQVKRARELLYSKAEEVLSLEKRKQQLGK 554
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALDAAER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 555 DMEERAEEIKVHKAMLTSQ------IRCVEQQRKTMSSeFHERLSKIDKLKNRYEILTVVMLPPEGEE---EKTQSYYVI 625
Cdd:TIGR02168 483 ELAQLQARLDSLERLQENLegfsegVKALLKNQSGLSG-ILGVLSELISVDEGYEAAIEAALGGRLQAvvvENLNAAKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 626 KAAQEKEELQR-----EGDSLDAKINKAEKEIYALQN-TLQVLNSCNSNYKQSFKKVTPSSDEYA----LKIQLEEQKRT 695
Cdd:TIGR02168 562 IAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEgFLGVAKDLVKFDPKLRKALSYLLGGVLvvddLDNALELAKKL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 696 aDERYR---------------------------CKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKE 748
Cdd:TIGR02168 642 -RPGYRivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568920977 749 TEEQKPKLQRITKQCGRLRREIRILKQTDNETLEEQDIQLREIIQFHKDIDQ 800
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
100-789 |
1.29e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 100 QQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKlTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLE 179
Cdd:PTZ00121 1122 KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED-ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 180 RQELIQQWENTIEQMQRRDQEIDNCALALSRIkQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVS-KCRMDYQ 258
Cdd:PTZ00121 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKA-EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARK 1279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 259 RHEGNRSQLKDELDTLKTTLNRtssdlqalrKNISKVKKDIfDETLRLQKLKHHNEVVKHKLKMITEKTlsiEEKATNME 338
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEK---------KKADEAKKKA-EEAKKADEAKKKAEEAKKKADAAKKKA---EEAKKAAE 1346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 339 DMLKEEEKGLKEVEvqlgivKDVLFKKVQELQNEIAKEKAlvseiegtrSSLKHLNKQLHKLDFETLKQQEIMYSQDFYI 418
Cdd:PTZ00121 1347 AAKAEAEAAADEAE------AAEEKAEAAEKKKEEAKKKA---------DAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 419 QQVERRMSRLKGEINSEEKQALEakilELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDE---KESLMNKISE 495
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKAD----EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEakkKAEEAKKADE 1487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 496 LNLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEE--RAEEIKVHKAMLTSQ 573
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElkKAEELKKAEEKKKAE 1567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 574 IRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPP-------EGEEEKTQSYYVIKAAQEKEELQREGDSLDAKIN 646
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmkaeeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 647 KAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQ-KRTADERYRCKQRQIRELQE--DIQSMENTFEV 723
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAlKKEAEEAKKAEELKKKEAEEkkKAEELKKAEEE 1727
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568920977 724 IGHLANNAKEKLTEKQTLAFQLRKETEEQKpKLQRITKQCGRLRREIRILKQT-DNETLEEQDIQLR 789
Cdd:PTZ00121 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEKKAEEIRKEKEAvIEEELDEEDEKRR 1793
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
217-774 |
3.56e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 217 EKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRmdyqrheGNRSQLKDELDTLKTTLNRTSSDLQALRKNISKVK 296
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREEL-------EKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 297 KDIFDETLRLQKLKHHNEVVKHKLKMITEktlsIEEKATN---MEDMLKEEEKGLKEVEVQLGIVKdvlfKKVQELQNEI 373
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKE----LKEKAEEyikLSEFYEEYLDELREIEKRLSRLE----EEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 374 AKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMysqdfyiqQVERRMSRLKGEINSEEKQALEAKILELKKT--- 450
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK--------AKKEELERLKKRLTGLTPEKLEKELEELEKAkee 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 451 ----MDEKKSTLSLLESQIKKLHNDLYFIKKSNGK--------NNDEKESLMNKISelnLFIDRSEKELSKAKAVKEDMM 518
Cdd:PRK03918 403 ieeeISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKELLEEYT---AELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 519 IEDNLLKLQVKRAREL--LYSKAEEVLSLEKRKQQLGKDMEERA----EEIKVHKAMLTSQIRCV----------EQQRK 582
Cdd:PRK03918 480 KELRELEKVLKKESELikLKELAEQLKELEEKLKKYNLEELEKKaeeyEKLKEKLIKLKGEIKSLkkelekleelKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 583 TMSSEFHERLSKIDKLKNRYEILTVVMLPP-EGEEEKTQSYY-----VIKAAQEKEELQREGDSLDAKINKAEKEIYALQ 656
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEElEERLKELEPFYneyleLKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 657 NTLQVLNSCNSNYKQSFKkvtpssdeyalkiqlEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANNAKEKLT 736
Cdd:PRK03918 640 KRLEELRKELEELEKKYS---------------EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
570 580 590
....*....|....*....|....*....|....*...
gi 568920977 737 EkqtlafqlRKETEEQKPKLQRITKQCGRLRREIRILK 774
Cdd:PRK03918 705 E--------REKAKKELEKLEKALERVEELREKVKKYK 734
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
32-571 |
5.22e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 5.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 32 LYKARESEIESEEHFKAIAERELgrvknETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQmnwdqqalEAWLEESA 111
Cdd:PRK03918 223 LEKLEKEVKELEELKEEIEELEK-----ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 112 HKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLD------SELTETLSAQLELDKAAQDFRKIHLERQELIQ 185
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKeleekeERLEELKKKLKELEKRLEELEERHELYEEAKA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 186 QWENTIEQMQRRD----QEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHE 261
Cdd:PRK03918 370 KKEELERLKKRLTgltpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEH 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 262 GNR--SQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDET--LRLQKLKHHNEVVKHKLKMITEKTLsiEEKATNM 337
Cdd:PRK03918 450 RKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEEL--EKKAEEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 338 EDMLKEeekgLKEVEVQLGIVKDVLfKKVQELQNEIAkekALVSEIEGTRSSLKHLNKQLHKLDFETLKQ--QEIMYSQD 415
Cdd:PRK03918 528 EKLKEK----LIKLKGEIKSLKKEL-EKLEELKKKLA---ELEKKLDELEEELAELLKELEELGFESVEEleERLKELEP 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 416 FYIQQVERRMSRlkgeinsEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKSngKNNDEKESLMNKISE 495
Cdd:PRK03918 600 FYNEYLELKDAE-------KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK--YSEEEYEELREEYLE 670
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568920977 496 LNLFIDRSEKELSKAKAVKEDmmIEDNLLKLqvKRARELLYSKAEEVLSLEKRKqqlgKDMEERAEEIKVHKAMLT 571
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREE--IKKTLEKL--KEELEEREKAKKELEKLEKAL----ERVEELREKVKKYKALLK 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-715 |
5.61e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 348 LKEVEVQLGIVKDVLFKKVQELQN-EIAKEKALvseiegtrsSLKHLNKQLHKLDF-ETLKQQEIMYSQdfyIQQVERRM 425
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERlRREREKAE---------RYQALLKEKREYEGyELLKEKEALERQ---KEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 426 SRLKgeinsEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYF-IKKSNGKNNDEKESLMNKISELNLFIDRSE 504
Cdd:TIGR02169 247 ASLE-----EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 505 KELSKAKAvkedmmiednllklQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVhkamLTSQIRCVEQQRKTM 584
Cdd:TIGR02169 322 ERLAKLEA--------------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED----LRAELEEVDKEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 585 SSEFHERLSKIDKLKN-RYEILTVVMLPPEGEEEKTQSYYVIKAA-----QEKEELQREGDSLDAKINKAEKEIYALQNT 658
Cdd:TIGR02169 384 RDELKDYREKLEKLKReINELKRELDRLQEELQRLSEELADLNAAiagieAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 568920977 659 LQVLNSCNSNYKQSFKKVTPSSDEYALKI-QLEEQKRTADERYRCKQRQIRELQEDIQ 715
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELaEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-651 |
7.81e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 7.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 341 LKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGtrsSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQ 420
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 421 VERRMSRLKGEI--NSEEKQALEAKILELKKTMDEKKStlSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNL 498
Cdd:TIGR02169 749 LEQEIENVKSELkeLEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 499 fidrSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTSQIRCVE 578
Cdd:TIGR02169 827 ----EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568920977 579 QQRKTMSSEFHERLSKIDKLKNRYEIL-----TVVMLPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKINKAEKE 651
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALeeelsEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQE 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
33-701 |
1.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 33 YKARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQM--------ENNIFKTTQKLDDLKCQMNWDQQALE 104
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 105 AWL-------EESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLD-------SELTETLSAQLELDKAA 170
Cdd:TIGR02169 312 EKEreledaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEdlraeleEVDKEFAETRDELKDYR 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 171 QDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKV 250
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 251 SKCRMDYQRHEGNRSQLKDELDTLKTTLnRTSSDLQALRKNISKVKKDIFDETL-----------------------RLQ 307
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQA-RASEERVRGGRAVEEVLKASIQGVHgtvaqlgsvgeryataievaagnRLN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 308 KLKHHNEVV-KHKLKMITEKTLSieeKAT-----NMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVS 381
Cdd:TIGR02169 551 NVVVEDDAVaKEAIELLKRRKAG---RATflplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 382 EIEGTRSSLkhLNKQLHKLDFETLKQQEIM--------YSQDFYIQQVER--RMSRLKGEINsEEKQALEAKILELKKTM 451
Cdd:TIGR02169 628 DIEAARRLM--GKYRMVTLEGELFEKSGAMtggsraprGGILFSRSEPAElqRLRERLEGLK-RELSSLQSELRRIENRL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 452 DEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMM------------I 519
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEedlhkleealndL 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 520 EDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKV---HKAMLTSQIRCVEQQRKTMSSEFHERLSKID 596
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYlekEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 597 KLKNRYEILTVVMLPPEGEEEKTQSyYVIKAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKV 676
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKK-ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
730 740
....*....|....*....|....*
gi 568920977 677 TPSSDEYALKIQLEEQKRTADERYR 701
Cdd:TIGR02169 944 EEIPEEELSLEDVQAELQRVEEEIR 968
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
342-664 |
1.72e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 342 KEEEKGLKEVEVQLGIVKDVLF---KKVQ--ELQNEIAKE-KALVSEIEGTRSSL-----KHLNKQLHKLDFETLKQQEI 410
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNeleRQLKslERQAEKAERyKELKAELRELELALlvlrlEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 411 MYSQDFYIQQVERRMSRLKGEINSeekqaLEAKILELKKTMDEKKSTLSLLESQIKKLhndlyfikksngknNDEKESLM 490
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSE-----LEEEIEELQKELYALANEISRLEQQKQIL--------------RERLANLE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 491 NKISELNLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIkvhkAML 570
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV----AQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 571 TSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYYVI----KAAQEKEELQREGDSLDAKIN 646
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEeeleELQEELERLEEALEELREELE 471
|
330
....*....|....*...
gi 568920977 647 KAEKEIYALQNTLQVLNS 664
Cdd:TIGR02168 472 EAEQALDAAERELAQLQA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
130-393 |
3.34e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 130 KIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALS 209
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 210 RIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALR 289
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 290 KNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQEL 369
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260
....*....|....*....|....
gi 568920977 370 QNEIAKEKALVSEIEGTRSSLKHL 393
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-468 |
6.21e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 6.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 55 GRVKNETQLLE--KEMAIIRERKSQMENNIFKTTQKLDDLKcqmnwdqqaleawleesahkdsdsltlqkysqqddNKIR 132
Cdd:TIGR02168 664 GSAKTNSSILErrREIEELEEKIEELEEKIAELEKALAELR-----------------------------------KELE 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 133 ALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIdncalalsrik 212
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL----------- 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 213 QEAREKEGVVKEKIKFLENEVENNieyERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALRKNI 292
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKAL---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 293 SKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLgivkdvlfkkvQELQNE 372
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL-----------EELREK 923
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 373 IAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEImySQDFYIQQVERRMSRLKGEINS---------EEKQALEAK 443
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN--KIEDDEEEARRRLKRLENKIKElgpvnlaaiEEYEELKER 1001
|
410 420
....*....|....*....|....*
gi 568920977 444 ILELKKTMDEKKSTLSLLESQIKKL 468
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-275 |
1.22e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 22 QENKILEDQSLYKARESEIESEEHFKAI--AERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNwD 99
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELsdASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-E 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 100 QQALEAWLEESAHKDSDSLTlQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQdfrkihlE 179
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALN-DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK-------E 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 180 RQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQR 259
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
250
....*....|....*.
gi 568920977 260 HEGNRSQLKDELDTLK 275
Cdd:TIGR02169 915 KRKRLSELKAKLEALE 930
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
114-599 |
1.84e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 114 DSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQ 193
Cdd:TIGR04523 102 NSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 194 MQRRDQEIDNcalalsrikqearekegvVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDT 273
Cdd:TIGR04523 182 KLNIQKNIDK------------------IKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 274 LKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKhhnevvkhklKMITEKTLSIEEKATNMEDMLKEEEKGL-KEVE 352
Cdd:TIGR04523 244 KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNN----------KKIKELEKQLNQLKSEISDLNNQKEQDWnKELK 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 353 VQLGIVKdvlfKKVQELQNEIAKEKALVSEIEGTRSSLKhlnKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEI 432
Cdd:TIGR04523 314 SELKNQE----KKLEEIQNQISQNNKIISQLNEQISQLK---KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEI 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 433 NS--EEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKA 510
Cdd:TIGR04523 387 KNleSQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 511 KAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLgkdmEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHE 590
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL----EEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
....*....
gi 568920977 591 RLSKIDKLK 599
Cdd:TIGR04523 543 LEDELNKDD 551
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
212-568 |
3.41e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 212 KQEAREKEGVVKEKIKFLE---NEVENNIEYERKISVAERKVSKCRMDYQRHEGnrSQLKDELDTLKTTLNRTSSDLQAL 288
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDliiDEKRQQLERLRREREKAERYQALLKEKREYEG--YELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 289 RKNISKVKKDIFDETLRL----QKLKHHNEVVKHK----LKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEvqlgivkd 360
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLeeieQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAE-------- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 361 vlfKKVQELQNEIAKEKalvSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINS--EEKQ 438
Cdd:TIGR02169 322 ---ERLAKLEAEIDKLL---AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDyrEKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 439 ALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISElnlfidrSEKELSKAKAVKEDMM 518
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK-------QEWKLEQLAADLSKYE 468
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568920977 519 IEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKA 568
Cdd:TIGR02169 469 QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
23-218 |
3.54e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 23 ENKILEDQSLYKARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLK--------- 93
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKeelaellra 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 94 CQMNWDQQALEAWL--EESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLT---MEYNEKRKLLDSELTETLSAQLELDK 168
Cdd:COG4942 113 LYRLGRQPPLALLLspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalrAELEAERAELEALLAELEEERAALEA 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568920977 169 AAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREK 218
Cdd:COG4942 193 LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-652 |
4.74e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 103 LEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQE 182
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 183 LIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEG 262
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 263 NRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLK 342
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 343 EEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEimysqDFYIQQVE 422
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE-----AAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 423 RRMSRLKGEINSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLyfikKSNGKNNDEKESLMNKISELNLFIDR 502
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA----LARGAIGAAVDLVASDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 503 SEKELSKAKAVKEDMMIEDNLLKLQVKRARELLY----------SKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTS 572
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLegeggsaggsLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 573 QIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYYVIKAAQEKEELQREgDSLDAKINKAEKEI 652
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL-EELERELERLEREI 776
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
433-652 |
7.76e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 433 NSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKA 512
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 513 VKEDMMiedNLLKLQVKRARELLYSKAEEVLSLEKRK---QQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFH 589
Cdd:COG4942 105 ELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568920977 590 ERLSKIDKLKNRYEILTVVMLPPEGEEEKTQsyyvikaaQEKEELQREGDSLDAKINKAEKEI 652
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELA--------AELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
24-789 |
8.76e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 24 NKILEDQSLyKARESEIESEEHFKAI--AERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNwdqq 101
Cdd:TIGR02169 208 EKAERYQAL-LKEKREYEGYELLKEKeaLERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK---- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 102 alEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLtmeyNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQ 181
Cdd:TIGR02169 283 --DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA----EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 182 ELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVaerKVSKCRMDYQRHE 261
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE---ELADLNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 262 GNRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKmITEKTLSIEEKATN----M 337
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEERVRggraV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 338 EDMLKEEEKGLKEVEVQLGIVKDVLFKKVQ-----ELQN------EIAKEK-ALVSEIEGTRSSLKHLNK--QLHKLDFE 403
Cdd:TIGR02169 513 EEVLKASIQGVHGTVAQLGSVGERYATAIEvaagnRLNNvvveddAVAKEAiELLKRRKAGRATFLPLNKmrDERRDLSI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 404 TLKQQEIMYSQDF--YIQQVE-------------RRMSRLKGEINSEEKQALEAKILELKKTMDEKKSTLSLLESQIKKL 468
Cdd:TIGR02169 593 LSEDGVIGFAVDLveFDPKYEpafkyvfgdtlvvEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 469 HNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKR 548
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 549 KQQLGKDMEERAEEIKVHKAMLtsqircVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVMLPPEG------EEEKTQSY 622
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDL------HKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArlreieQKLNRLTL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 623 YVIKAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKqsfkkvtpsSDEYALKIQLEEQKRTADERyrc 702
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE---------AALRDLESRLGDLKKERDEL--- 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 703 kQRQIRELQEDIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQK------PKLQRITKQCGRLRREIRILKQT 776
Cdd:TIGR02169 895 -EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeeLSLEDVQAELQRVEEEIRALEPV 973
|
810
....*....|...
gi 568920977 777 DNETLEEQDIQLR 789
Cdd:TIGR02169 974 NMLAIQEYEEVLK 986
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
57-587 |
1.17e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 57 VKNETQLLEKEMAIIRERKSQMENNIfkttqklDDLKCQMNwdqqaleawleeSAHKDSDSLTLQKYSQQDDNKIRALTL 136
Cdd:TIGR01612 1120 IKNLDQKIDHHIKALEEIKKKSENYI-------DEIKAQIN------------DLEDVADKAISNDDPEEIEKKIENIVT 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 137 QLEKLTMEYNEKRKLLdSELTETLSAQLELDKA-------AQDFRKIHLER-QELIQQWENTIEQMQRRDQEIDNcalal 208
Cdd:TIGR01612 1181 KIDKKKNIYDEIKKLL-NEIAEIEKDKTSLEEVkginlsyGKNLGKLFLEKiDEEKKKSEHMIKAMEAYIEDLDE----- 1254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 209 srikqearekegvVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDY---QRHEGNRSQLKDELDTLKTTLNRTSsdl 285
Cdd:TIGR01612 1255 -------------IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHiisKKHDENISDIREKSLKIIEDFSEES--- 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 286 qalrkNISKVKKDIFDETLRLQKlkhHNEVVKHKLKMITektlsieekatNMEDMLKeeekglkevevqLGIVKDVLfKK 365
Cdd:TIGR01612 1319 -----DINDIKKELQKNLLDAQK---HNSDINLYLNEIA-----------NIYNILK------------LNKIKKII-DE 1366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 366 VQELQNEIAK-EKALVSEIEGTRSSLKHLNKQLhklDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEEkqaleAKI 444
Cdd:TIGR01612 1367 VKEYTKEIEEnNKNIKDELDKSEKLIKKIKDDI---NLEECKSKIESTLDDKDIDECIKKIKELKNHILSEE-----SNI 1438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 445 LELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKsNGKNNDEKESLMNkISELNLFIDRSEKelSKAKAVKEDMMIEDN-L 523
Cdd:TIGR01612 1439 DTYFKNADENNENVLLLFKNIEMADNKSQHILK-IKKDNATNDHDFN-INELKEHIDKSKG--CKDEADKNAKAIEKNkE 1514
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568920977 524 LKLQVKRARELLYSKAEEVlSLEKRKQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSE 587
Cdd:TIGR01612 1515 LFEQYKKDVTELLNKYSAL-AIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKE 1577
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
23-567 |
2.43e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 23 ENKILEDQSLYKaresEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQA 102
Cdd:pfam05483 137 EEEIQENKDLIK----ENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 103 LEAWLEESAHKDSDslTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLldselteTLSAQLELDKAAQDFRKIHLERQE 182
Cdd:pfam05483 213 MHFKLKEDHEKIQH--LEEEYKKEINDKEKQVSLLLIQITEKENKMKDL-------TFLLEESRDKANQLEEKTKLQDEN 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 183 LIQqwenTIEQMQRRDQEIDNCALALSR---IKQEAREKEGVVKEKIKFLENEVENNIEYERK------ISVAERKVSKC 253
Cdd:pfam05483 284 LKE----LIEKKDHLTKELEDIKMSLQRsmsTQKALEEDLQIATKTICQLTEEKEAQMEELNKakaahsFVVTEFEATTC 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 254 ------RMDYQRHEGNRSQLKdeldTLKTTLNRTSSDLQALrkniSKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKT 327
Cdd:pfam05483 360 sleellRTEQQRLEKNEDQLK----IITMELQKKSSELEEM----TKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIA 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 328 LSIEEKATNMEDMLKEEEKGLKEVEVQLGIVK---DVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQL------- 397
Cdd:pfam05483 432 EELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELtqeasdm 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 398 ------HKLDF-ETLKQQEIMYSQDFYIQQVERRMS-----------------RLKGEINSEEKQALEAKILELKKTMDE 453
Cdd:pfam05483 512 tlelkkHQEDIiNCKKQEERMLKQIENLEEKEMNLRdelesvreefiqkgdevKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 454 KKSTLSLLESQ-------IKKLHNDLYFIKKSNGKNNDEKESLMNKISELNL-----------FIDRSEKELSKAKAVKE 515
Cdd:pfam05483 592 LENKCNNLKKQienknknIEELHQENKALKKKGSAENKQLNAYEIKVNKLELelasakqkfeeIIDNYQKEIEDKKISEE 671
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 516 DMMIE--------DNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHK 567
Cdd:pfam05483 672 KLLEEvekakaiaDEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK 731
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
130-478 |
2.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 130 KIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALS 209
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 210 RIKQEAREKEgvvkEKIKFLENEVEnniEYERKISvaERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALR 289
Cdd:TIGR02169 762 ELEARIEELE----EDLHKLEEALN---DLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 290 KNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKdvlfKKVQEL 369
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE----RKIEEL 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 370 QNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQ-QEIMYSQDFY--IQQVERRMSRLkGEINS---EEKQALEAK 443
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpEEELSLEDVQaeLQRVEEEIRAL-EPVNMlaiQEYEEVLKR 987
|
330 340 350
....*....|....*....|....*....|....*
gi 568920977 444 ILELKktmdEKKSTLSLLESQIKKLHNDLYFIKKS 478
Cdd:TIGR02169 988 LDELK----EKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
418-562 |
2.99e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 418 IQQVERRMSRLKGEInseekQALEAKILELKKTMDEKKSTLSLLESQIKKLhndlyfikKSNGKNNDEKEslmNKISELN 497
Cdd:COG2433 408 LTEEEEEIRRLEEQV-----ERLEAEVEELEAELEEKDERIERLERELSEA--------RSEERREIRKD---REISRLD 471
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568920977 498 LFIDRSEKELSkakavKEDMMIEDnlLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEE 562
Cdd:COG2433 472 REIERLERELE-----EERERIEE--LKRKLERLKELWKLEHSGELVPVKVVEKFTKEAIRRLEE 529
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
365-623 |
3.24e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 365 KVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQqeimySQDFYIQQVERRMSRLKGEINS--EEKQALEA 442
Cdd:PRK05771 47 KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIK-----DVEEELEKIEKEIKELEEEISEleNEIKELEQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 443 KILELKKtmdekkstLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKE--------LSKAKAVK 514
Cdd:PRK05771 122 EIERLEP--------WGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGyvyvvvvvLKELSDEV 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 515 EDMMIEDNLLKLQV---KRARELLYSKAEEVLSLEKRKQQLGKDMEE----RAEEIKVHKAMLTSqircvEQQRKTMSSE 587
Cdd:PRK05771 194 EEELKKLGFERLELeeeGTPSELIREIKEELEEIEKERESLLEELKElakkYLEELLALYEYLEI-----ELERAEALSK 268
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568920977 588 FHERL-----------SKIDKLKNRYEILT-----VVMLPPEGEEEKTQSYY 623
Cdd:PRK05771 269 FLKTDktfaiegwvpeDRVKKLKELIDKATggsayVEFVEPDEEEEEVPTKL 320
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
282-512 |
3.53e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 282 SSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEvqlgivkdv 361
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE--------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 362 lfKKVQELQNEIAKEKALVSEI------EGTRSSLKHLnkqLHKLDFETLKQQEIMYSQdfYIQQVERRMSRLKGEIN-- 433
Cdd:COG4942 90 --KEIAELRAELEAQKEELAELlralyrLGRQPPLALL---LSPEDFLDAVRRLQYLKY--LAPARREQAEELRADLAel 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568920977 434 SEEKQALEAKILELKKTMDEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKA 512
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
35-762 |
9.29e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 35 ARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRErksqMENNIfkttQKLDDLKCQMNWDQQALEAWLEESAHKD 114
Cdd:TIGR00606 228 SKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK----LDNEI----KALKSRKKQMEKDNSELELKMEKVFQGT 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 115 SDSLT-LQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETL----SAQLELDKAAQDFRKIHLERQELIQQWE- 188
Cdd:TIGR00606 300 DEQLNdLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLveqgRLQLQADRHQEHIRARDSLIQSLATRLEl 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 189 NTIEQMQRRDQEIDNC-ALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQL 267
Cdd:TIGR00606 380 DGFERGPFSERQIKNFhTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 268 KDELDTLKTTLNRTSSDLQALRK---NISKVKKDIFDETLR----------------LQKLKHHNEVVKHKLKMITEKTL 328
Cdd:TIGR00606 460 IKELQQLEGSSDRILELDQELRKaerELSKAEKNSLTETLKkevkslqnekadldrkLRKLDQEMEQLNHHTTTRTQMEM 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 329 SIEEKATNMEDMLKEEEKGLKEVEVQLG------IVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDF 402
Cdd:TIGR00606 540 LTKDKMDKDEQIRKIKSRHSDELTSLLGyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 403 ETLKQQEIMYsQDFYIQQVERRMSRLKGEINSEEKQaleAKILELKKTMDEKKSTLSLLESQIKKLHNDLYFikKSNGKN 482
Cdd:TIGR00606 620 QLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSSKQ---RAMLAGATAVYSQFITQLTDENQSCCPVCQRVF--QTEAEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 483 NDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEE 562
Cdd:TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETL 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 563 IKVHKAMLTSQIRCveQQRKTMSSEFHERLSKIDKlknRYEILTVVMLPPEGEEEKTQsyyvikAAQEKEELQREGDSLD 642
Cdd:TIGR00606 774 LGTIMPEEESAKVC--LTDVTIMERFQMELKDVER---KIAQQAAKLQGSDLDRTVQQ------VNQEKQEKQHELDTVV 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 643 AKINKAEKEIYALQNTLQVLNSCNSNYKQSfkkvtpssdeyalKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFE 722
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSE-------------KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 568920977 723 VIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQ 762
Cdd:TIGR00606 910 QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEK 949
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
19-252 |
1.11e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 19 VANQENKILEDQSLYKARESEIES--EEHFKAIAERE-----LGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDD 91
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEElrLELEELELELEeaqaeEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 92 LKCQMNWDQQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQ 171
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 172 DFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVS 251
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
.
gi 568920977 252 K 252
Cdd:COG1196 488 E 488
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
554-792 |
1.18e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 554 KDMEERAEEIK--------VHKAMLTsqircVEQQRKTMS--SEFHERLSKIDKLKNRYEILtVVMLPPEGEEEKTQSyy 623
Cdd:COG4913 221 PDTFEAADALVehfddlerAHEALED-----AREQIELLEpiRELAERYAAARERLAELEYL-RAALRLWFAQRRLEL-- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 624 vikAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLnscnsnykqsfkKVTPSSDEYALKIQLEEQKRTADERYRCK 703
Cdd:COG4913 293 ---LEAELEELRAELARLEAELERLEARLDALREELDEL------------EAQIRGNGGDRLEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 704 QRQIRELQEDIQSME----NTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQCGRLRREIRILKQTDNe 779
Cdd:COG4913 358 ERRRARLEALLAALGlplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS- 436
|
250
....*....|...
gi 568920977 780 TLEEQDIQLREII 792
Cdd:COG4913 437 NIPARLLALRDAL 449
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
290-790 |
2.68e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 290 KNISKVKKDIfDETLRLQKLKHHNEVVKHKLKMITEktLSIEEKATNMEDMLKEEE-KGLKEVEVQLGIVKDVLFKKVQE 368
Cdd:PTZ00121 1230 KKAEEAKKDA-EEAKKAEEERNNEEIRKFEEARMAH--FARRQAAIKAEEARKADElKKAEEKKKADEAKKAEEKKKADE 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 369 LQNEiAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDfYIQQVERRMSRLKGEINSEEKQALEAKILELK 448
Cdd:PTZ00121 1307 AKKK-AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA-EAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 449 KTMDEKKSTLSLLE--SQIKKLHNDLYFIKKSNGKNNDEKESL--MNKISELNLFIDRSEKELSKAKAVKEDMMIEDNLL 524
Cdd:PTZ00121 1385 KKAEEKKKADEAKKkaEEDKKKADELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 525 KLQVKRARELLYSKAEEVLSLEKRKQQlGKDMEERAEEIK--VHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRY 602
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKKK-AEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 603 EILTVVMLPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKINKAEKEiyalqntlQVLNSCNSNYKQSFKKVTPSSDE 682
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA--------RIEEVMKLYEEEKKMKAEEAKKA 1615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 683 YALKIQLEEQKRTADERYRCKQRQIRELQE--DIQSMENTFEVIGHLANNAKEKLTEKQTLAFQLRKETEEQKPKLQRIT 760
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEkkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
490 500 510
....*....|....*....|....*....|
gi 568920977 761 KQCGRLRREIRILKQTDNETLEEQDIQLRE 790
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
135-671 |
2.71e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 135 TLQLEKLTMEyNEKRKLLDS--ELTETLSAQL--ELDKAAQDFRKIHLERQELIQQWENTIEQMQRRDQEIdncalalSR 210
Cdd:TIGR01612 719 TVELHLSNIE-NKKNELLDIivEIKKHIHGEInkDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKI-------SE 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 211 IKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLN-RTSSDLQALR 289
Cdd:TIGR01612 791 IKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKeKIDSEHEQFA 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 290 KNISKVKKDIFDEtlrlqKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEE---------KGLKEVEVQLGIVKD 360
Cdd:TIGR01612 871 ELTNKIKAEISDD-----KLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEyikicentkESIEKFHNKQNILKE 945
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 361 VLFKKVQELQNEIAKEKALVSEIEGT----RSSLKHLNKQLHKLDFETLKQQEIMYSQDFY------------------- 417
Cdd:TIGR01612 946 ILNKNIDTIKESNLIEKSYKDKFDNTlidkINELDKAFKDASLNDYEAKNNELIKYFNDLKanlgknkenmlyhqfdeke 1025
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 418 ---------IQQVERRMSRLKGEIN------SEEKQALEAKILELKKTMDEKKSTLSLLE-SQIK---KLHNDLYFIKKS 478
Cdd:TIGR01612 1026 katndieqkIEDANKNIPNIEIAIHtsiyniIDEIEKEIGKNIELLNKEILEEAEINITNfNEIKeklKHYNFDDFGKEE 1105
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 479 NGKNNDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMMIEdnlLKLQVKRARELLYSKA--EEVLSLEKRKQQLGKDM 556
Cdd:TIGR01612 1106 NIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDE---IKAQINDLEDVADKAIsnDDPEEIEKKIENIVTKI 1182
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 557 EERaEEIKVHKAMLTSQIRCVEQQRKTmssefherLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYYVIKAAQEKEELQR 636
Cdd:TIGR01612 1183 DKK-KNIYDEIKKLLNEIAEIEKDKTS--------LEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLD 1253
|
570 580 590
....*....|....*....|....*....|....*
gi 568920977 637 EGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQ 671
Cdd:TIGR01612 1254 EIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
22-274 |
4.72e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 22 QENKILEDQSLYKARESEIESEEHFKAIAERELGRvknetqlLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQQ 101
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 102 ALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQ 181
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 182 ELIQQWENTIEQMQRRD----------QEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIE-----YERKISVA 246
Cdd:TIGR02168 877 ALLNERASLEEALALLRseleelseelRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlseeYSLTLEEA 956
|
250 260
....*....|....*....|....*...
gi 568920977 247 ERKVSKCRMDYQRHEGNRSQLKDELDTL 274
Cdd:TIGR02168 957 EALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
32-798 |
5.23e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 32 LYKARESEIESEEHFKAIAERELGRVKNETQLLEKEMA--IIRERKSQMENNIFKTTQKLDDLKCQMNWDQQALEAwLEE 109
Cdd:TIGR00606 306 LYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTelLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDG-FER 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 110 SAHKD---SDSLTLQKYSQQDDNKIRALTLQ--LEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLERQELi 184
Cdd:TIGR00606 385 GPFSErqiKNFHTLVIERQEDEAKTAAQLCAdlQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL- 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 185 QQWENTIEQMQRRDQEIDNCALALSRIKQEA-------------REKEGVVKEKIKFLENEVENNIEYE---RKISVAER 248
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSltetlkkevkslqNEKADLDRKLRKLDQEMEQLNHHTTtrtQMEMLTKD 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 249 KVSKcrmdYQRHEGNRSQLKDELDTLKTTLNRT---SSDLQALRKNISKVKKDIFDETLRLQKLKHHNEVVKHKLKMITE 325
Cdd:TIGR00606 544 KMDK----DEQIRKIKSRHSDELTSLLGYFPNKkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 326 KTLSIEEK------ATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHK 399
Cdd:TIGR00606 620 QLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISD 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 400 LDFETLKQQEIMYSQDFYIQQVERRMSRLKGeinseeKQALEAKILELK-KTMDEKKSTLSLLESQIKKLHNDLYFIKKS 478
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRRDEMLG------LAPGRQSIIDLKeKEIPELRNKLQKVNRDIQRLKNDIEEQETL 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 479 NGKNNDEKESLMNKISEL----NLFIDRSEKELSKAKAVKEDMMIEDNLLKLQVKRARE-------LLYSKAEEVLSLEK 547
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVtimeRFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQekqheldTVVSKIELNRKLIQ 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 548 RKQQLGKDMEERAEEIKVHKAMLTS---QIRCVEQQRKTMSSEFHERLSKIDKLKNRyeiltvvMLPPEGEEEKTQsyyv 624
Cdd:TIGR00606 854 DQQEQIQHLKSKTNELKSEKLQIGTnlqRRQQFEEQLVELSTEVQSLIREIKDAKEQ-------DSPLETFLEKDQ---- 922
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 625 ikaaQEKEELqregdsLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSFKKVTPSSDEYalKIQLEEQKRTADERYRCKQ 704
Cdd:TIGR00606 923 ----QEKEEL------ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY--LKQKETELNTVNAQLEECE 990
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 705 RQIRELQEDIQSMENTFEvighlANNAKEKLTEKQTLAFQLRKETEEQKPKLQRITKQCG------------RLRREIRI 772
Cdd:TIGR00606 991 KHQEKINEDMRLMRQDID-----TQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGqmqvlqmkqehqKLEENIDL 1065
|
810 820
....*....|....*....|....*.
gi 568920977 773 LKQTDNETLEEQDIQLREIIQFHKDI 798
Cdd:TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKEL 1091
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
295-791 |
6.83e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 295 VKKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEE---KATNMEDMLKEEEKGLKEVEVQLgivkDVLFKKVQELQN 371
Cdd:PRK03918 146 SREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKfikRTENIEELIKEKEKELEEVLREI----NEISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 372 EIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEimysqdfYIQQVERRMSRLKGEINSEEKQALEAKILElkktm 451
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE-------KIRELEERIEELKKEIEELEEKVKELKELK----- 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 452 dEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELnlfidrSEKELSKAKAVKEDMMIEDNLLKLQVK-R 530
Cdd:PRK03918 290 -EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL------EEKEERLEELKKKLKELEKRLEELEERhE 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 531 ARELLYSKAEEVLSLEKRKQQLGKD-MEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHERLSKIDKLKNRYEILTVVM 609
Cdd:PRK03918 363 LYEEAKAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 610 LPPEGEEEKTqsyYVIKAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQVLNSCNSNYKQSfkKVTPSSDEYALKIQL 689
Cdd:PRK03918 443 RELTEEHRKE---LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA--EQLKELEEKLKKYNL 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 690 EEQKRTADErYRCKQRQIRELQEDIQSMENTFEVIGhlannakekltekqtlafQLRKETEEQKPKLQRITKQCGRLRRE 769
Cdd:PRK03918 518 EELEKKAEE-YEKLKEKLIKLKGEIKSLKKELEKLE------------------ELKKKLAELEKKLDELEEELAELLKE 578
|
490 500
....*....|....*....|..
gi 568920977 770 IRILKQTDNETLEEQDIQLREI 791
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPF 600
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
205-416 |
7.37e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 205 ALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKIS----VAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNR 280
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLkqlaALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 281 TSSDLQALRKNISKV------------------KKDIFDETLRLQKLKHHNEVVKHKLKMITEKTLSIEEKATNMEDMLK 342
Cdd:COG4942 95 LRAELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568920977 343 EEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALVSEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDF 416
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
20-326 |
9.71e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 20 ANQENKILEDQSLYKARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWD 99
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 100 QQALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAAQDFRKIHLE 179
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568920977 180 RQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYERKISVAERKVSKCRMDYQR 259
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568920977 260 hegnrsqLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQ-KLKHHNEVVKHKLKMITEK 326
Cdd:TIGR02168 920 -------LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEnKIEDDEEEARRRLKRLENK 980
|
|
| |
