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Conserved domains on  [gi|568975993|ref|XP_006534364|]
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plexin domain-containing protein 1 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NIDO super family cl02648
Nidogen-like; This is a nidogen-like domain (NIDO) domain and is an extracellular domain found ...
 238-344 2.13e-04

Nidogen-like; This is a nidogen-like domain (NIDO) domain and is an extracellular domain found in nidogen and hypothetical proteins of unknown function.


The actual alignment was detected with superfamily member smart00539:

Pssm-ID: 470642  Cd Length: 152  Bit Score: 41.26  E-value: 2.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568975993   238 TIATGGFIFMGDMLHRML-TATQYVaplmanfNPGYSDNSTvayFDNGTVFVVQWDHVYLQDREDR-GSFTFQAALHRDG 315
Cdd:smart00539   8 TEGTGKVYYRETTDHAILdRATESV-------REGFTDMGG---FRAKSVVIVTWENVAAYGSQSSdGTNTFQAVLATDG 77

                           90       100       110
                   ....*....|....*....|....*....|....
gi 568975993   316 R---IVFGYKEIPMAVLDISSA--QHPVKAGLSD 344
Cdd:smart00539  78 SrtyAIFLYPSLGWTSDTTAGGddGVRARAGFNG 111
 
Name Accession Description Interval E-value
NIDO smart00539
Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins;
238-344 2.13e-04

Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins;


Pssm-ID: 214712  Cd Length: 152  Bit Score: 41.26  E-value: 2.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568975993   238 TIATGGFIFMGDMLHRML-TATQYVaplmanfNPGYSDNSTvayFDNGTVFVVQWDHVYLQDREDR-GSFTFQAALHRDG 315
Cdd:smart00539   8 TEGTGKVYYRETTDHAILdRATESV-------REGFTDMGG---FRAKSVVIVTWENVAAYGSQSSdGTNTFQAVLATDG 77

                           90       100       110
                   ....*....|....*....|....*....|....
gi 568975993   316 R---IVFGYKEIPMAVLDISSA--QHPVKAGLSD 344
Cdd:smart00539  78 SrtyAIFLYPSLGWTSDTTAGGddGVRARAGFNG 111
 
Name Accession Description Interval E-value
NIDO smart00539
Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins;
238-344 2.13e-04

Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins;


Pssm-ID: 214712  Cd Length: 152  Bit Score: 41.26  E-value: 2.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568975993   238 TIATGGFIFMGDMLHRML-TATQYVaplmanfNPGYSDNSTvayFDNGTVFVVQWDHVYLQDREDR-GSFTFQAALHRDG 315
Cdd:smart00539   8 TEGTGKVYYRETTDHAILdRATESV-------REGFTDMGG---FRAKSVVIVTWENVAAYGSQSSdGTNTFQAVLATDG 77

                           90       100       110
                   ....*....|....*....|....*....|....
gi 568975993   316 R---IVFGYKEIPMAVLDISSA--QHPVKAGLSD 344
Cdd:smart00539  78 SrtyAIFLYPSLGWTSDTTAGGddGVRARAGFNG 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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