clathrin heavy chain 1 isoform X1 [Mus musculus]
clathrin heavy chain( domain architecture ID 12019188)
clathrin heavy chain is a component of clathrin, the major protein of the polyhedral coat of coated pits and vesicles
List of domain hits
Name | Accession | Description | Interval | E-value | |||
CLH | smart00299 | Clathrin heavy chain repeat homology; |
1275-1417 | 4.04e-40 | |||
Clathrin heavy chain repeat homology; : Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 145.49 E-value: 4.04e-40
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
980-1119 | 1.58e-34 | |||
Clathrin heavy chain repeat homology; : Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 129.32 E-value: 1.58e-34
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
1129-1266 | 5.14e-33 | |||
Clathrin heavy chain repeat homology; : Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 125.08 E-value: 5.14e-33
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
687-825 | 1.51e-32 | |||
Clathrin heavy chain repeat homology; : Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.92 E-value: 1.51e-32
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
834-969 | 6.26e-32 | |||
Clathrin heavy chain repeat homology; : Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 122.00 E-value: 6.26e-32
|
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Clathrin_H_link | pfam13838 | Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
357-422 | 6.73e-32 | |||
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268. : Pssm-ID: 463995 Cd Length: 66 Bit Score: 119.24 E-value: 6.73e-32
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1428-1565 | 9.22e-31 | |||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. : Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 118.90 E-value: 9.22e-31
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
542-675 | 1.23e-29 | |||
Clathrin heavy chain repeat homology; : Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 115.45 E-value: 1.23e-29
|
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Clathrin-link | pfam09268 | Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of ... |
332-355 | 4.23e-10 | |||
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain. : Pssm-ID: 462732 Cd Length: 24 Bit Score: 55.91 E-value: 4.23e-10
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
199-235 | 2.93e-07 | |||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. : Pssm-ID: 460192 Cd Length: 37 Bit Score: 48.18 E-value: 2.93e-07
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
257-289 | 4.90e-05 | |||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. : Pssm-ID: 460192 Cd Length: 37 Bit Score: 42.02 E-value: 4.90e-05
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
19-56 | 4.94e-05 | |||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. : Pssm-ID: 460192 Cd Length: 37 Bit Score: 42.02 E-value: 4.94e-05
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
297-331 | 1.88e-04 | |||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. : Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.09 E-value: 1.88e-04
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
149-188 | 1.70e-03 | |||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. : Pssm-ID: 460192 Cd Length: 37 Bit Score: 37.40 E-value: 1.70e-03
|
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Name | Accession | Description | Interval | E-value | ||||
CLH | smart00299 | Clathrin heavy chain repeat homology; |
1275-1417 | 4.04e-40 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 145.49 E-value: 4.04e-40
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
980-1119 | 1.58e-34 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 129.32 E-value: 1.58e-34
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
1129-1266 | 5.14e-33 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 125.08 E-value: 5.14e-33
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
687-825 | 1.51e-32 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.92 E-value: 1.51e-32
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
834-969 | 6.26e-32 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 122.00 E-value: 6.26e-32
|
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Clathrin_H_link | pfam13838 | Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
357-422 | 6.73e-32 | ||||
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268. Pssm-ID: 463995 Cd Length: 66 Bit Score: 119.24 E-value: 6.73e-32
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
980-1120 | 1.71e-31 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 120.82 E-value: 1.71e-31
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1129-1268 | 4.05e-31 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 119.67 E-value: 4.05e-31
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1428-1565 | 9.22e-31 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 118.90 E-value: 9.22e-31
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
542-675 | 1.23e-29 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 115.45 E-value: 1.23e-29
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1275-1417 | 6.28e-27 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 6.28e-27
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
844-971 | 7.55e-27 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 7.55e-27
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
689-827 | 1.42e-26 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 106.96 E-value: 1.42e-26
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
542-679 | 7.33e-24 | ||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 98.87 E-value: 7.33e-24
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
1428-1579 | 5.24e-22 | ||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 93.49 E-value: 5.24e-22
|
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Clathrin-link | pfam09268 | Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of ... |
332-355 | 4.23e-10 | ||||
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain. Pssm-ID: 462732 Cd Length: 24 Bit Score: 55.91 E-value: 4.23e-10
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
199-235 | 2.93e-07 | ||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 48.18 E-value: 2.93e-07
|
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1056-1220 | 3.37e-07 | ||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 3.37e-07
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Coatomer_WDAD_beta-like | cd22947 | Coatomer WD Associated Region from Coatomer Subunit Beta and Beta'; Coatomer subunit beta', ... |
1062-1186 | 1.99e-06 | ||||
Coatomer WD Associated Region from Coatomer Subunit Beta and Beta'; Coatomer subunit beta', also called beta'-coat protein; beta'-COP; p102, is a component of the coatomer, which is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunit. It is a heptameric complex that can polymerize into a cage to deform the membrane into a bud. This model corresponds to the WD-associated (WDAD) region found in coatomer subunits beta and beta' and is composed of a beta-propeller and an alpha-solenoid. The WD40 domain is found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly. It typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40. Between the GH and WD lies a conserved core. It forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet. Each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade. The last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure. The residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands allowing them to bind either stably or reversibly. Pssm-ID: 438572 Cd Length: 475 Bit Score: 52.47 E-value: 1.99e-06
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
257-289 | 4.90e-05 | ||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 42.02 E-value: 4.90e-05
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
19-56 | 4.94e-05 | ||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 42.02 E-value: 4.94e-05
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
297-331 | 1.88e-04 | ||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.09 E-value: 1.88e-04
|
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BepA | COG4783 | Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1055-1165 | 7.80e-04 | ||||
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 7.80e-04
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
149-188 | 1.70e-03 | ||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 37.40 E-value: 1.70e-03
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Spy | COG3914 | Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1055-1187 | 8.79e-03 | ||||
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.75 E-value: 8.79e-03
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Name | Accession | Description | Interval | E-value | |||||
CLH | smart00299 | Clathrin heavy chain repeat homology; |
1275-1417 | 4.04e-40 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 145.49 E-value: 4.04e-40
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
980-1119 | 1.58e-34 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 129.32 E-value: 1.58e-34
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
1129-1266 | 5.14e-33 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 125.08 E-value: 5.14e-33
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
687-825 | 1.51e-32 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.92 E-value: 1.51e-32
|
|||||||||
CLH | smart00299 | Clathrin heavy chain repeat homology; |
834-969 | 6.26e-32 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 122.00 E-value: 6.26e-32
|
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Clathrin_H_link | pfam13838 | Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
357-422 | 6.73e-32 | |||||
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268. Pssm-ID: 463995 Cd Length: 66 Bit Score: 119.24 E-value: 6.73e-32
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
980-1120 | 1.71e-31 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 120.82 E-value: 1.71e-31
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1129-1268 | 4.05e-31 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 119.67 E-value: 4.05e-31
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1428-1565 | 9.22e-31 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 118.90 E-value: 9.22e-31
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
542-675 | 1.23e-29 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 115.45 E-value: 1.23e-29
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1275-1417 | 6.28e-27 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 6.28e-27
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
844-971 | 7.55e-27 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 7.55e-27
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
689-827 | 1.42e-26 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 106.96 E-value: 1.42e-26
|
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Clathrin | pfam00637 | Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
542-679 | 7.33e-24 | |||||
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain. Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 98.87 E-value: 7.33e-24
|
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CLH | smart00299 | Clathrin heavy chain repeat homology; |
1428-1579 | 5.24e-22 | |||||
Clathrin heavy chain repeat homology; Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 93.49 E-value: 5.24e-22
|
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Clathrin-link | pfam09268 | Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of ... |
332-355 | 4.23e-10 | |||||
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain. Pssm-ID: 462732 Cd Length: 24 Bit Score: 55.91 E-value: 4.23e-10
|
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
199-235 | 2.93e-07 | |||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 48.18 E-value: 2.93e-07
|
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1056-1220 | 3.37e-07 | |||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 3.37e-07
|
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Coatomer_WDAD_beta-like | cd22947 | Coatomer WD Associated Region from Coatomer Subunit Beta and Beta'; Coatomer subunit beta', ... |
1062-1186 | 1.99e-06 | |||||
Coatomer WD Associated Region from Coatomer Subunit Beta and Beta'; Coatomer subunit beta', also called beta'-coat protein; beta'-COP; p102, is a component of the coatomer, which is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunit. It is a heptameric complex that can polymerize into a cage to deform the membrane into a bud. This model corresponds to the WD-associated (WDAD) region found in coatomer subunits beta and beta' and is composed of a beta-propeller and an alpha-solenoid. The WD40 domain is found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly. It typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40. Between the GH and WD lies a conserved core. It forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet. Each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade. The last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure. The residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands allowing them to bind either stably or reversibly. Pssm-ID: 438572 Cd Length: 475 Bit Score: 52.47 E-value: 1.99e-06
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Coatomer_WDAD | pfam04053 | Coatomer WD associated region; This region is composed of WD40 repeats. |
1075-1164 | 3.17e-06 | |||||
Coatomer WD associated region; This region is composed of WD40 repeats. Pssm-ID: 427679 Cd Length: 439 Bit Score: 51.47 E-value: 3.17e-06
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1057-1248 | 1.18e-05 | |||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 1.18e-05
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
257-289 | 4.90e-05 | |||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 42.02 E-value: 4.90e-05
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
19-56 | 4.94e-05 | |||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 42.02 E-value: 4.94e-05
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LapB | COG2956 | Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1109-1376 | 1.00e-04 | |||||
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.26 E-value: 1.00e-04
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
297-331 | 1.88e-04 | |||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.09 E-value: 1.88e-04
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BepA | COG4783 | Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1055-1165 | 7.80e-04 | |||||
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 7.80e-04
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Clathrin_propel | pfam01394 | Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
149-188 | 1.70e-03 | |||||
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller. Pssm-ID: 460192 Cd Length: 37 Bit Score: 37.40 E-value: 1.70e-03
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COG4700 | COG4700 | Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
1089-1190 | 4.38e-03 | |||||
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 40.64 E-value: 4.38e-03
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Spy | COG3914 | Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1055-1187 | 8.79e-03 | |||||
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.75 E-value: 8.79e-03
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Blast search parameters | ||||
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