NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|569010618|ref|XP_006528333|]
View 

protein PBDC1 isoform X6 [Mus musculus]

Protein Classification

polysaccharide biosynthesis domain-containing protein( domain architecture ID 10519930)

polysaccharide biosynthesis domain-containing protein such as human polysaccharide biosynthesis domain-containing protein 1 (PBDC1)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Polysacc_synt_4 pfam04669
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
 35-136 7.04e-26

Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.


:

Pssm-ID: 368048  Cd Length: 177  Bit Score: 97.57  E-value: 7.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569010618   35 IEMAWAIRAMQHAEVYYKLISSV------DPQFLKLTKVDDQIYSEFREIFETLR-------VDVLDPEELKSESAK--- 98
Cdd:pfam04669   1 IEMQWAVKALRRREVPCNLLVSLlwaslnHGGRTVFTEEDDEIYAKFRKAFPELEayhvaynTKVLDADELKSAAKKrpe 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569010618   99 ----------------EKW--------RPFCLKFEGIVED-YNYGTLLRLDCSQGYTEENTIF 136
Cdd:pfam04669  81 crpvnllfsdckevyeEKWdvimvdapRGFCEEFPGRMADiYTAGTLARSRASKGYSPETTVF 143
 
Name Accession Description Interval E-value
Polysacc_synt_4 pfam04669
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
 35-136 7.04e-26

Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.


Pssm-ID: 368048  Cd Length: 177  Bit Score: 97.57  E-value: 7.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569010618   35 IEMAWAIRAMQHAEVYYKLISSV------DPQFLKLTKVDDQIYSEFREIFETLR-------VDVLDPEELKSESAK--- 98
Cdd:pfam04669   1 IEMQWAVKALRRREVPCNLLVSLlwaslnHGGRTVFTEEDDEIYAKFRKAFPELEayhvaynTKVLDADELKSAAKKrpe 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569010618   99 ----------------EKW--------RPFCLKFEGIVED-YNYGTLLRLDCSQGYTEENTIF 136
Cdd:pfam04669  81 crpvnllfsdckevyeEKWdvimvdapRGFCEEFPGRMADiYTAGTLARSRASKGYSPETTVF 143
 
Name Accession Description Interval E-value
Polysacc_synt_4 pfam04669
Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in ...
 35-136 7.04e-26

Polysaccharide biosynthesis; This family of proteins plays a role in xylan biosynthesis in plant cell walls. IRX15/IRX15-L precise role in xylan biosynthesis is unknown. Glucuronoxylan methyltransferase (GXMT) catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1 specifically transfers the methyl group from S-adenosyl-l-methionine to O-4 of alpha-d-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. The function of members of this family in animals and fungi is not known.


Pssm-ID: 368048  Cd Length: 177  Bit Score: 97.57  E-value: 7.04e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569010618   35 IEMAWAIRAMQHAEVYYKLISSV------DPQFLKLTKVDDQIYSEFREIFETLR-------VDVLDPEELKSESAK--- 98
Cdd:pfam04669   1 IEMQWAVKALRRREVPCNLLVSLlwaslnHGGRTVFTEEDDEIYAKFRKAFPELEayhvaynTKVLDADELKSAAKKrpe 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569010618   99 ----------------EKW--------RPFCLKFEGIVED-YNYGTLLRLDCSQGYTEENTIF 136
Cdd:pfam04669  81 crpvnllfsdckevyeEKWdvimvdapRGFCEEFPGRMADiYTAGTLARSRASKGYSPETTVF 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH