|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2 |
cd21375 |
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ... |
39-102 |
8.09e-31 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410601 [Multi-domain] Cd Length: 64 Bit Score: 116.65 E-value: 8.09e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569001954 39 EEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375 1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
309-686 |
6.45e-10 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 65.19 E-value: 6.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 309 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 388
Cdd:PHA03307 75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 389 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 466
Cdd:PHA03307 153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 467 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 546
Cdd:PHA03307 233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 547 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 626
Cdd:PHA03307 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 627 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 686
Cdd:PHA03307 392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1982-2466 |
1.06e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.57 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 1982 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2061
Cdd:PHA03247 2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2062 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2141
Cdd:PHA03247 2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2142 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2221
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2222 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2301
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2302 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2382 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2456
Cdd:PHA03247 2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
|
490
....*....|....*
gi 569001954 2457 -----HAEGGEPPAS 2466
Cdd:PHA03247 3009 sslalHEETDPPPVS 3023
|
|
| cwf21 |
pfam08312 |
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ... |
58-101 |
1.35e-07 |
|
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Pssm-ID: 462421 [Multi-domain] Cd Length: 44 Bit Score: 49.73 E-value: 1.35e-07
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 569001954 58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312 1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
499-603 |
1.53e-05 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 50.28 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 499 KRGHSRSRSPQWRRSRSAQRWgKSRSPQRRGRSRSpqRPGWSRSRNtqrrgrSRSARRGRSHSRSPATRGRSRSRTPARR 578
Cdd:TIGR01642 12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERS--YREDSRPRD------RRRYDSRSPRSLRYSSVRRSRDRPRRRS 82
|
90 100
....*....|....*....|....*
gi 569001954 579 GRSRSRTPARRRSRSRTPARRRSRS 603
Cdd:TIGR01642 83 RSVRSIEQHRRRLRDRSPSNQWRKD 107
|
|
| RSRP |
pfam17069 |
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown. |
436-604 |
1.21e-03 |
|
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
Pssm-ID: 293674 [Multi-domain] Cd Length: 299 Bit Score: 43.61 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 436 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 510
Cdd:pfam17069 10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 511 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 590
Cdd:pfam17069 90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
|
170
....*....|....
gi 569001954 591 SRSRTPARRRSRSR 604
Cdd:pfam17069 161 SRSRTPFRLSEKER 174
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2 |
cd21375 |
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ... |
39-102 |
8.09e-31 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410601 [Multi-domain] Cd Length: 64 Bit Score: 116.65 E-value: 8.09e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569001954 39 EEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375 1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
|
|
| cwf21_SRRM3 |
cd21376 |
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine ... |
37-102 |
3.22e-23 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine/arginine repetitive matrix protein 3 (SRRM3) may play a role in regulating breast cancer cell invasiveness. It may also be involved in RYBP-mediated breast cancer progression. SRRM3 contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410602 [Multi-domain] Cd Length: 68 Bit Score: 95.19 E-value: 3.22e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569001954 37 KGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21376 1 KSEEEIKKLDAALVKKPNREILDHERKRKVELKCMEMQELMEEQGYTEEEIRQKVSTFRQMLMEKE 66
|
|
| cwf21_SRRM2-like |
cd21373 |
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ... |
53-102 |
5.63e-17 |
|
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410600 [Multi-domain] Cd Length: 50 Bit Score: 76.46 E-value: 5.63e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 569001954 53 PNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21373 1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEKD 50
|
|
| cwf21_CWC21-like |
cd21372 |
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ... |
54-102 |
3.96e-10 |
|
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410599 [Multi-domain] Cd Length: 49 Bit Score: 57.10 E-value: 3.96e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 569001954 54 NPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21372 1 DKEILEHERKRQIELKCLELRDELEDEGLSEEEIEEKVDELREKLLKEL 49
|
|
| cwf21 |
cd21369 |
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the ... |
55-101 |
4.05e-10 |
|
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevents its binding to Prp8. The domain is composed of two alpha helices. Proteins containing the cwf21 domain include complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. This domain family also includes U2-associated protein SR140 from Eumetazoa, protein RRC1, and similar proteins from plants.
Pssm-ID: 410596 [Multi-domain] Cd Length: 48 Bit Score: 57.09 E-value: 4.05e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 569001954 55 PDILDHERKRRVELRCLELEEMMEEQG-YEEQQIQEKVATFRLMLLEK 101
Cdd:cd21369 1 MDEEKRAKKREIELKVMELRDELEEQGrKPEQQIQEKVEHYRDKLLQR 48
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
309-686 |
6.45e-10 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 65.19 E-value: 6.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 309 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 388
Cdd:PHA03307 75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 389 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 466
Cdd:PHA03307 153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 467 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 546
Cdd:PHA03307 233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 547 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 626
Cdd:PHA03307 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 627 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 686
Cdd:PHA03307 392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1982-2466 |
1.06e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.57 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 1982 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2061
Cdd:PHA03247 2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2062 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2141
Cdd:PHA03247 2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2142 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2221
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2222 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2301
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2302 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PHA03247 2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2382 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2456
Cdd:PHA03247 2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
|
490
....*....|....*
gi 569001954 2457 -----HAEGGEPPAS 2466
Cdd:PHA03247 3009 sslalHEETDPPPVS 3023
|
|
| cwf21 |
pfam08312 |
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ... |
58-101 |
1.35e-07 |
|
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Pssm-ID: 462421 [Multi-domain] Cd Length: 44 Bit Score: 49.73 E-value: 1.35e-07
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 569001954 58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312 1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2147-2405 |
3.45e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 52.54 E-value: 3.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2147 PPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAI---PASVNLADSRTPAAAAAMNLA 2223
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAaaaAATRAEAPPAAPAPPATADRG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2224 SPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPR-SAHGTAP 2302
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARaPAAASRE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2303 VNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRARS-----RTPPSAPSQSRMTSERE 2377
Cdd:PRK07003 520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPaaapaAAPKPAAPRVAVQVPTP 599
|
250 260
....*....|....*....|....*...
gi 569001954 2378 RAPSPASRMVQASSQSLLPPAQDRPRSP 2405
Cdd:PRK07003 600 RARAATGDAPPNGAARAEQAAESRGAPP 627
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
294-600 |
1.23e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.94 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 294 QSPPLASGHQGEGDAPSVEPGATNIQQPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHV 373
Cdd:PHA03307 150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 374 DSPRPLAAIPSSQEPvnPSSEASPTRGCSPPKSPEKPPQSTSSESCPP-SPQPTKGSRHASSSPESLKPTPAPGSRREIS 452
Cdd:PHA03307 230 DDAGASSSDSSSSES--SGCGWGPENECPLPRPAPITLPTRIWEASGWnGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 453 SSPTSKNRSHGRAKRDkSHSHTPSHRAGRSRSPATKRGRSRSRTPtkrghSRSRSPQWRRSrsaqrwgkSRSPQRRGRSR 532
Cdd:PHA03307 308 APSSPRASSSSSSSRE-SSSSSTSSSSESSRGAAVSPGPSPSRSP-----SPSRPPPPADP--------SSPRKRPRPSR 373
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569001954 533 SPQRPGWSRSRNTqrrgrsrsarrGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPARRR 600
Cdd:PHA03307 374 APSSPAASAGRPT-----------RRRARAAVAGRARRRDATGRFpAGRPRPSPLDAGAASGAFYARYP 431
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
499-603 |
1.53e-05 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 50.28 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 499 KRGHSRSRSPQWRRSRSAQRWgKSRSPQRRGRSRSpqRPGWSRSRNtqrrgrSRSARRGRSHSRSPATRGRSRSRTPARR 578
Cdd:TIGR01642 12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERS--YREDSRPRD------RRRYDSRSPRSLRYSSVRRSRDRPRRRS 82
|
90 100
....*....|....*....|....*
gi 569001954 579 GRSRSRTPARRRSRSRTPARRRSRS 603
Cdd:TIGR01642 83 RSVRSIEQHRRRLRDRSPSNQWRKD 107
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
400-610 |
4.68e-05 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.75 E-value: 4.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 400 GCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRA 479
Cdd:PRK12678 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 480 GRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS 559
Cdd:PRK12678 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 569001954 560 HSRSPATRGRSRSRTPARRGRSRSRTPARRR-----SRSRTPARRRSRSRTPARRG 610
Cdd:PRK12678 222 DGGDRRGRRRRRDRRDARGDDNREDRGDRDGddgegRGGRRGRRFRDRDRRGRRGG 277
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1981-2441 |
4.74e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.17 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 1981 RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2060
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS 2662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2061 LSSsRMSCFSRPSMSPTPLDRCRSPGMLEPLGS----ARTPmsvlqqtggsmmdGPGPRIPDHPRSSVPENHAQSRIALA 2136
Cdd:PHA03247 2663 RPR-RARRLGRAAQASSPPQRPRRRAARPTVGSltslADPP-------------PPPPTPEPAPHALVSATPLPPGPAAA 2728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2137 LTAISLGTARPPPSMSAAGLAARMSqvPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAA 2216
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2217 AAAMnlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALA-ALSLTGSGTP----------------PTAANYPSSS 2279
Cdd:PHA03247 2807 PPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPpSLPLGGSVAPggdvrrrppsrspaakPAAPARPPVR 2884
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2280 R------------------------TPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSS-------------- 2321
Cdd:PHA03247 2885 RlarpavsrstesfalppdqperppQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAgagepsgavpqpwl 2964
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2322 --------------------SRMAPALSGANLTSPRVPlsaydRVSGRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PHA03247 2965 galvpgrvavprfrvpqpapSREAPASSTPPLTGHSLS-----RVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDA 3039
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569001954 2382 PASRM-----VQASSQSLLP-----PAQDRPRSPVPSAFSDQS-RSVVQTTPVAGSQSLSSGTVAKSTSSA 2441
Cdd:PHA03247 3040 DSLFDsdserSDLEALDPLPpephdPFAHEPDPATPEAGARESpSSQFGPPPLSANAALSRRYVRSTGRSA 3110
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2200-2425 |
2.53e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.41 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2200 SAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAL------SLTGSGTPPTAA 2273
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALaaarqaSARGPGGAPAPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2274 NYPSSSRTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGAnltSPRVPLSAYDRVSGRTSPl 2353
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP---APAQPDAAPAGWVAESIP- 527
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569001954 2354 mldrarsRTPPSAPSQSRMTSERERAPSPASRMVQASSQSLLPPAQDRPRSPVPSAFSDQSRSVVQTTPVAG 2425
Cdd:PRK12323 528 -------DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPVRG 592
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2164-2481 |
3.17e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.32 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2164 PAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPA 2243
Cdd:PHA03307 61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2244 ASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSR 2323
Cdd:PHA03307 141 VGSPGPPPAASPPAAGA-----SPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISA 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2324 MAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRA-RSRTPPSAPSQSRMTSERERAPSPASRMVQASSQSllPPAQDRP 2402
Cdd:PHA03307 216 SASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGpENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS--SSSSPRE 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2403 RSPVPSAFSDQSRSVVQTTPVAGSQSLS--SGTVAKSTSSASDHNGMLSGPAPGISHAEGGEPPASTGAQQPSTLAALQP 2480
Cdd:PHA03307 294 RSPSPSPSSPGSGPAPSSPRASSSSSSSreSSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSR 373
|
.
gi 569001954 2481 A 2481
Cdd:PHA03307 374 A 374
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
380-592 |
4.59e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.67 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 380 AAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREiSSSPTSKN 459
Cdd:PRK12678 65 AAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE-AARRGAAR 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 460 RSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR-WGKSRSPQRRGRSRSPQRPG 538
Cdd:PRK12678 144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDrDRRDRREQGDRREERGRRDG 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 569001954 539 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 592
Cdd:PRK12678 224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGG 277
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
379-604 |
4.63e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 45.67 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 379 LAAIPSSQEP-VNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTS 457
Cdd:PRK12678 52 IAAIKEARGGgAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 458 KNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRP 537
Cdd:PRK12678 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQ 211
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569001954 538 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTpARRRSRSRTPARRRSRSR 604
Cdd:PRK12678 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRG-GRRGRRFRDRDRRGRRGG 277
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2143-2352 |
5.38e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 45.25 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2143 GTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNL 2222
Cdd:PRK12323 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2223 ASPRTAVAPSAVN---LADPRTPAASAVNLAGARTPAALAALSltGSGTPP---TAANYPSSSRTPQAPTPANLVVGPRS 2296
Cdd:PRK12323 450 PAPAPAAAPAAAArpaAAGPRPVAAAAAAAPARAAPAAAPAPA--DDDPPPweeLPPEFASPAPAQPDAAPAGWVAESIP 527
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 569001954 2297 AHGTAPvniagsrtPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSP 2352
Cdd:PRK12323 528 DPATAD--------PDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2020-2411 |
9.55e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.78 E-value: 9.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2020 LTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALSSSRMSCFSRPSMSPTPldrcRSPGMLEPLGSARTPms 2099
Cdd:PHA03307 50 LAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTP----PGPSSPDPPPPTPPP-- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2100 vlqqtgGSMMDGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAAN 2179
Cdd:PHA03307 124 ------ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2180 LASRIPAASAAAMNLASARTSAiPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASavnLAGARTPAALA 2259
Cdd:PHA03307 198 PPAAASPRPPRRSSPISASASS-PAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP---ITLPTRIWEAS 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2260 ALSLTGSGTPPTAANYPSSSRTPqAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLS-SSRMAPALSGANLTSPRV 2338
Cdd:PHA03307 274 GWNGPSSRPGPASSSSSPRERSP-SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSeSSRGAAVSPGPSPSRSPS 352
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569001954 2339 PLSAYDRVSGRTSPlmlDRARSRTPPSAPSQSRMTSERERA-PSPASRMVQASSQSLLPPAQDRPRSPVPSAFS 2411
Cdd:PHA03307 353 PSRPPPPADPSSPR---KRPRPSRAPSSPAASAGRPTRRRArAAVAGRARRRDATGRFPAGRPRPSPLDAGAAS 423
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2223-2431 |
1.11e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.48 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2223 ASPRTAVAPSAVNLADPRTPAASAVnlAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPRSAHGTAP 2302
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAA--PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2303 VNIAGSRTPAGLAPTNLSSSRMAPALSgANLTSPRVPLSAYDRVSGRTSPLM-LDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PRK12323 450 PAPAPAAAPAAAARPAAAGPRPVAAAA-AAAPARAAPAAAPAPADDDPPPWEeLPPEFASPAPAQPDAAPAGWVAESIPD 528
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 569001954 2382 PASRMVQASSQSLLPPAqdrPRSPVPSAFSDQSRSVVQTTPVAGSQSLSS 2431
Cdd:PRK12323 529 PATADPDDAFETLAPAP---AAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
511-608 |
1.14e-03 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 44.14 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 511 RRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQRRGRSRSARRgrshsrspatRGRSRSRTPARRGRSRSRTPaRRR 590
Cdd:TIGR01622 2 YRDRERERLRDSSSAGDRDRRRDKGRER-SRDRSRDRERSRSRRRD----------RHRDRDYYRGRERRSRSRRP-NRR 69
|
90
....*....|....*...
gi 569001954 591 SRSRTPARRRSRSRTPAR 608
Cdd:TIGR01622 70 YRPREKRRRRGDSYRRRR 87
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
165-462 |
1.20e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 165 PEPPKPYSLVRETSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 244
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 245 RKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKI------HTTALTGQSPPLASGHQGEGDAP--SVEPGAT 316
Cdd:PHA03247 2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASpagplpPPTSAQPTAPPPPPGPPPPSLPLggSVAPGGD 2861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 317 NIQQPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPllveqhvDSPRPLAAIPSSQEPVNPSSeAS 396
Cdd:PHA03247 2862 VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-------QAPPPPQPQPQPPPPPQPQP-PP 2933
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569001954 397 PTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSH 462
Cdd:PHA03247 2934 PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
|
|
| RSRP |
pfam17069 |
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown. |
436-604 |
1.21e-03 |
|
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
Pssm-ID: 293674 [Multi-domain] Cd Length: 299 Bit Score: 43.61 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 436 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 510
Cdd:pfam17069 10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 511 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 590
Cdd:pfam17069 90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
|
170
....*....|....
gi 569001954 591 SRSRTPARRRSRSR 604
Cdd:pfam17069 161 SRSRTPFRLSEKER 174
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2104-2402 |
1.35e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2104 TGGSmmdGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASR 2183
Cdd:PRK07003 363 TGGG---APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2184 IPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSL 2263
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA-SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 2264 TGSGTPPTAANYPSSSRTPQAPTPANlvvgpRSAHGTAPVNI---AGSRTPAGlaptnlsSSRMAPALSGANLTSPRVPL 2340
Cdd:PRK07003 519 EDAPAAAAPPAPEARPPTPAAAAPAA-----RAGGAAAALDVlrnAGMRVSSD-------RGARAAAAAKPAAAPAAAPK 586
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569001954 2341 SAYDRVSgrtSPLMLDRARSRTPPSAPSQSrmtsererAPSPASrmvqASSQSLLPPAQDRP 2402
Cdd:PRK07003 587 PAAPRVA---VQVPTPRARAATGDAPPNGA--------ARAEQA----AESRGAPPPWEDIP 633
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
162-610 |
1.44e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 162 QIAPEPPKPYSLVRETsssRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSK 241
Cdd:PHA03247 2572 RPAPRPSEPAVTSRAR---RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 242 DKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPlasghqgeGDAPSVEPGATNIQQP 321
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP--------PPTPEPAPHALVSATP 2720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 322 SSPAPSTKQSSSPyedkdkkeksAVRPSPSPERSSTGPELPAPtpllvEQHVDSPRPLAAIPSSQEPVNPSSEASPTrgc 401
Cdd:PHA03247 2721 LPPGPAAARQASP----------ALPAAPAPPAVPAGPATPGG-----PARPARPPTTAGPPAPAPPAAPAAGPPRR--- 2782
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 402 SPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHT-----PS 476
Cdd:PHA03247 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggDV 2862
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 477 HRAGRSRSPATK---RGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRS 553
Cdd:PHA03247 2863 RRRPPSRSPAAKpaaPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 569001954 554 ARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPaRRRSRSRTPARRRSRSRTPARRG 610
Cdd:PHA03247 2943 LAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP-RFRVPQPAPSREAPASSTPPLTG 2998
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
313-444 |
3.25e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.84 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 313 PGATNIQQPSSPAPStkQSSSPYEdkdkkEKSAVRPSPSPERSSTGPELPAPTPllVEQHVDSPRPLAAIPSSQEPVNPS 392
Cdd:PRK14971 370 SGGRGPKQHIKPVFT--QPAAAPQ-----PSAAAAASPSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAAVPVNPP 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 569001954 393 SEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPA 444
Cdd:PRK14971 441 STAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
359-590 |
3.52e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 359 PELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPES 438
Cdd:PRK12678 68 ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 439 LKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR 518
Cdd:PRK12678 148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRR 227
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569001954 519 WGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARrgrshsrspatRGRSRSRTPARRGRSRSRTPARRR 590
Cdd:PRK12678 228 GRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR-----------RFRDRDRRGRRGGDGGNEREPELR 288
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
350-726 |
4.42e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 350 PSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSEScpPSPQPTKGS 429
Cdd:PHA03307 39 SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPT--PPGPSSPDP 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 430 RHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKR-DKSHSHTPSHRAG-RSRSPATKRGRSRSRTPTKRGHSR--S 505
Cdd:PHA03307 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAaGASPAAVASDAASsRQAALPLSSPEETARAPSSPPAEPppS 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 506 RSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRT 585
Cdd:PHA03307 197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWN 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 586 PARRR---SRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSRSRTPArrsgrsrsrtpa 662
Cdd:PHA03307 277 GPSSRpgpASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG------------ 344
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569001954 663 rRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARRRSRSRSLVRRGRShSRTPQRRGRSGSSS 726
Cdd:PHA03307 345 -PSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA-AVAGRARRRDATGR 406
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
309-462 |
6.35e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.83 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 309 PSVEPGATNIQQPSSPAP--STKQSSSPYEDKDKKEKSAVRPSPSPERSST---GPELPAPTPLLV--EQHVDSPRPLAA 381
Cdd:pfam05109 449 PSSTHVPTNLTAPASTGPtvSTADVTSPTPAGTTSGASPVTPSPSPRDNGTeskAPDMTSPTSAVTtpTPNATSPTPAVT 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 382 IPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESlkPTPAPGSRREISSSPTSKNRS 461
Cdd:pfam05109 529 TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTT--PTPNATSPTVGETSPQANTTN 606
|
.
gi 569001954 462 H 462
Cdd:pfam05109 607 H 607
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
525-608 |
7.58e-03 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 41.42 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569001954 525 PQRRGRSRSPQRP-GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPA-----RRGRSRSRTPARRRSRSR-TPA 597
Cdd:TIGR01642 12 SRGRDRDRSSERPrRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRslrysSVRRSRDRPRRRSRSVRSiEQH 91
|
90
....*....|.
gi 569001954 598 RRRSRSRTPAR 608
Cdd:TIGR01642 92 RRRLRDRSPSN 102
|
|
| |
