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Conserved domains on  [gi|568994336|ref|XP_006521718|]
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run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X6 [Mus musculus]

Protein Classification

run domain Beclin-1-interacting and cysteine-rich domain-containing protein( domain architecture ID 17730331)

run domain Beclin-1-interacting and cysteine-rich domain-containing protein (Rubicon) is part of a Beclin-1-Vps34-containing autophagy complex; it negatively regulates endosome maturation and degradative endocytic trafficking and impairs autophagosome maturation process

CATH:  1.20.58.900
Gene Symbol:  RUBCN
Gene Ontology:  GO:1901981|GO:0006914|GO:0006897
PubMed:  11166556
SCOP:  4001476

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-RING_9 pfam13901
Putative zinc-RING and/or ribbon; This is a family of cysteine-rich proteins. Many members ...
685-885 1.08e-104

Putative zinc-RING and/or ribbon; This is a family of cysteine-rich proteins. Many members also carry a pleckstrin-homology domain, pfam00169


:

Pssm-ID: 464030  Cd Length: 205  Bit Score: 323.03  E-value: 1.08e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  685 RYCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQL 764
Cdd:pfam13901   1 RLCDYTGKYYCSGCHWNDTSVIPARILHNWDFKKYPVSKFAKQLLDSIYSQPLLNLSDLNPSLYSKVKELAKVRELREQL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  765 YHMKNMFKTCRLA--KELLDSFDVV-PGHLTEDLHLYSLSDLTATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEF 841
Cdd:pfam13901  81 KLLKDYLKTCRFAaeEELLKLFRLRpRHHLLEDSHLYSLQDLVDIKNGSLLPFLEELVQFAEKHVTNCELCQGKGFICEL 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 568994336  842 CQNeEDVIFPFELHKCRTCEECKACYHKTCFKSGR--CPRCERLQA 885
Cdd:pfam13901 161 CNS-DDIIFPFDIDTTSRCEKCKAVFHKSCFRSGAspCPKCERLQK 205
RUN_RUBCN cd17686
RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing ...
1-130 1.06e-52

RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing protein (RUBCN) and similar proteins; RUBCN, also called rubicon, or beclin-1 associated RUN domain containing protein (Baron), is part of a Beclin-1-Vps34-containing autophagy complex. It negatively regulates endosome maturation and degradative endocytic trafficking and impairs autophagosome maturation process. It is also an important negative regulator of the innate immune response, enhances viral replication and may play a role in viral immune evasion. This model contains the RUN domain of RUBCN.


:

Pssm-ID: 439048  Cd Length: 151  Bit Score: 180.54  E-value: 1.06e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336   1 MQNILYHGLIHDQVCCRQADYWQFVKDIRWLSPHSALHVEKFISLHESDQSDTDsvseraVAELWLQHSLQCHCLSAQLR 80
Cdd:cd17686   28 VENILQHGLKEFQGLNKEIDDWEFVQGLRWLQPTLAPSIEQQSRSSPSESEVSD------KGRLWLRQSLQQHCLSSQLQ 101
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568994336  81 PLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASM 130
Cdd:cd17686  102 WLVSDKELLRKYYEDEAFLRQEGYATALLICLTAVELNQPSLLAQIDPSL 151
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
137-347 1.22e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.60  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  137 SPLLVTKS----QSLTALPGSTYTPPASYAQHSyfgSSSSLQSMPQSSHSSERRSTSFSLSGPSWQPQED---------- 202
Cdd:pfam05109 431 SPTLNTTGfaapNTTTGLPSSTHVPTNLTAPAS---TGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNgteskapdmt 507
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  203 ----------RECLSPAETQTTPAPLPSDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPA 272
Cdd:pfam05109 508 sptsavttptPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPT 587
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  273 PH------GRTASCESHSSNGESSSSHLFSSSSSQKLESAASSLGDQEEGRQSQAGSVLRRSSFSEgQTAPVASGTKKSH 346
Cdd:pfam05109 588 PNatsptvGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISE-TLSPSTSDNSTSH 666

                  .
gi 568994336  347 I 347
Cdd:pfam05109 667 M 667
 
Name Accession Description Interval E-value
zf-RING_9 pfam13901
Putative zinc-RING and/or ribbon; This is a family of cysteine-rich proteins. Many members ...
685-885 1.08e-104

Putative zinc-RING and/or ribbon; This is a family of cysteine-rich proteins. Many members also carry a pleckstrin-homology domain, pfam00169


Pssm-ID: 464030  Cd Length: 205  Bit Score: 323.03  E-value: 1.08e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  685 RYCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQL 764
Cdd:pfam13901   1 RLCDYTGKYYCSGCHWNDTSVIPARILHNWDFKKYPVSKFAKQLLDSIYSQPLLNLSDLNPSLYSKVKELAKVRELREQL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  765 YHMKNMFKTCRLA--KELLDSFDVV-PGHLTEDLHLYSLSDLTATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEF 841
Cdd:pfam13901  81 KLLKDYLKTCRFAaeEELLKLFRLRpRHHLLEDSHLYSLQDLVDIKNGSLLPFLEELVQFAEKHVTNCELCQGKGFICEL 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 568994336  842 CQNeEDVIFPFELHKCRTCEECKACYHKTCFKSGR--CPRCERLQA 885
Cdd:pfam13901 161 CNS-DDIIFPFDIDTTSRCEKCKAVFHKSCFRSGAspCPKCERLQK 205
RUN_RUBCN cd17686
RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing ...
1-130 1.06e-52

RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing protein (RUBCN) and similar proteins; RUBCN, also called rubicon, or beclin-1 associated RUN domain containing protein (Baron), is part of a Beclin-1-Vps34-containing autophagy complex. It negatively regulates endosome maturation and degradative endocytic trafficking and impairs autophagosome maturation process. It is also an important negative regulator of the innate immune response, enhances viral replication and may play a role in viral immune evasion. This model contains the RUN domain of RUBCN.


Pssm-ID: 439048  Cd Length: 151  Bit Score: 180.54  E-value: 1.06e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336   1 MQNILYHGLIHDQVCCRQADYWQFVKDIRWLSPHSALHVEKFISLHESDQSDTDsvseraVAELWLQHSLQCHCLSAQLR 80
Cdd:cd17686   28 VENILQHGLKEFQGLNKEIDDWEFVQGLRWLQPTLAPSIEQQSRSSPSESEVSD------KGRLWLRQSLQQHCLSSQLQ 101
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568994336  81 PLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASM 130
Cdd:cd17686  102 WLVSDKELLRKYYEDEAFLRQEGYATALLICLTAVELNQPSLLAQIDPSL 151
RUN smart00593
domain involved in Ras-like GTPase signaling;
62-122 6.36e-12

domain involved in Ras-like GTPase signaling;


Pssm-ID: 214736 [Multi-domain]  Cd Length: 64  Bit Score: 61.48  E-value: 6.36e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568994336    62 AELWLQHSLQCHCLSAQLRPLLGDRQYIRKFYTETAFLLSDAHVT---AMLQCLEAVEQNNPRL 122
Cdd:smart00593   1 FRAWIRLALNEKLLSSWLNLLLSDEELLSKYYEPWAFLRDPEEGEqllGLLVGLSALDFNLPVD 64
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
137-347 1.22e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.60  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  137 SPLLVTKS----QSLTALPGSTYTPPASYAQHSyfgSSSSLQSMPQSSHSSERRSTSFSLSGPSWQPQED---------- 202
Cdd:pfam05109 431 SPTLNTTGfaapNTTTGLPSSTHVPTNLTAPAS---TGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNgteskapdmt 507
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  203 ----------RECLSPAETQTTPAPLPSDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPA 272
Cdd:pfam05109 508 sptsavttptPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPT 587
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  273 PH------GRTASCESHSSNGESSSSHLFSSSSSQKLESAASSLGDQEEGRQSQAGSVLRRSSFSEgQTAPVASGTKKSH 346
Cdd:pfam05109 588 PNatsptvGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISE-TLSPSTSDNSTSH 666

                  .
gi 568994336  347 I 347
Cdd:pfam05109 667 M 667
 
Name Accession Description Interval E-value
zf-RING_9 pfam13901
Putative zinc-RING and/or ribbon; This is a family of cysteine-rich proteins. Many members ...
685-885 1.08e-104

Putative zinc-RING and/or ribbon; This is a family of cysteine-rich proteins. Many members also carry a pleckstrin-homology domain, pfam00169


Pssm-ID: 464030  Cd Length: 205  Bit Score: 323.03  E-value: 1.08e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  685 RYCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQDINSALYRKVKLLNQVRLLRVQL 764
Cdd:pfam13901   1 RLCDYTGKYYCSGCHWNDTSVIPARILHNWDFKKYPVSKFAKQLLDSIYSQPLLNLSDLNPSLYSKVKELAKVRELREQL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  765 YHMKNMFKTCRLA--KELLDSFDVV-PGHLTEDLHLYSLSDLTATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEF 841
Cdd:pfam13901  81 KLLKDYLKTCRFAaeEELLKLFRLRpRHHLLEDSHLYSLQDLVDIKNGSLLPFLEELVQFAEKHVTNCELCQGKGFICEL 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 568994336  842 CQNeEDVIFPFELHKCRTCEECKACYHKTCFKSGR--CPRCERLQA 885
Cdd:pfam13901 161 CNS-DDIIFPFDIDTTSRCEKCKAVFHKSCFRSGAspCPKCERLQK 205
RUN_RUBCN cd17686
RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing ...
1-130 1.06e-52

RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing protein (RUBCN) and similar proteins; RUBCN, also called rubicon, or beclin-1 associated RUN domain containing protein (Baron), is part of a Beclin-1-Vps34-containing autophagy complex. It negatively regulates endosome maturation and degradative endocytic trafficking and impairs autophagosome maturation process. It is also an important negative regulator of the innate immune response, enhances viral replication and may play a role in viral immune evasion. This model contains the RUN domain of RUBCN.


Pssm-ID: 439048  Cd Length: 151  Bit Score: 180.54  E-value: 1.06e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336   1 MQNILYHGLIHDQVCCRQADYWQFVKDIRWLSPHSALHVEKFISLHESDQSDTDsvseraVAELWLQHSLQCHCLSAQLR 80
Cdd:cd17686   28 VENILQHGLKEFQGLNKEIDDWEFVQGLRWLQPTLAPSIEQQSRSSPSESEVSD------KGRLWLRQSLQQHCLSSQLQ 101
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568994336  81 PLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASM 130
Cdd:cd17686  102 WLVSDKELLRKYYEDEAFLRQEGYATALLICLTAVELNQPSLLAQIDPSL 151
RUN cd17671
RUN domain; RUN domain, named after RPIP8 (Rap2 interacting protein 8), UNC-14 and NESCA (new ...
1-117 1.67e-16

RUN domain; RUN domain, named after RPIP8 (Rap2 interacting protein 8), UNC-14 and NESCA (new molecule containing SH3 at the carboxyl-terminus), is a less conserved protein motif that comprises six conserved regions, which in some proteins have considerable insertions between them. The domain core is thought to take up a predominantly alpha fold, with basic amino acids in regions A and D possibly playing a functional role in interactions with Ras GTPases. RUN domains are often found in proteins linked particularly to the functions of GTPases in the Rap and Rab families, suggesting the RUN domain may be involved in Rab-mediated membrane trafficking, possibly as a Rab-binding site. RUN domain-containing proteins could hence play important roles in multiple Ras-like GTPase signalling pathways.


Pssm-ID: 439038  Cd Length: 154  Bit Score: 77.47  E-value: 1.67e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336   1 MQNILYHGLIHDQVCCRQADYWQFVKDIRWL--SPHSALHVEKFISLHESDqsdtdsvSERAVAELWLQHSLQCHCLSAQ 78
Cdd:cd17671   38 LEAILSHGLKPKRFGGGKVSFWDFLEALEKLlpAPSLKQAIRDINSLSNVK-------TDDGRGRAWIRLALNEKSLESY 110
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 568994336  79 LRPLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQ 117
Cdd:cd17671  111 LAALLSDQSLLRKYYEPWALLRDPEEAELFLSLLVGLSS 149
RUN smart00593
domain involved in Ras-like GTPase signaling;
62-122 6.36e-12

domain involved in Ras-like GTPase signaling;


Pssm-ID: 214736 [Multi-domain]  Cd Length: 64  Bit Score: 61.48  E-value: 6.36e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568994336    62 AELWLQHSLQCHCLSAQLRPLLGDRQYIRKFYTETAFLLSDAHVT---AMLQCLEAVEQNNPRL 122
Cdd:smart00593   1 FRAWIRLALNEKLLSSWLNLLLSDEELLSKYYEPWAFLRDPEEGEqllGLLVGLSALDFNLPVD 64
RUN_PLEKHM2 cd17680
RUN domain found in pleckstrin homology domain-containing family M member 2 (PLEKHM2) and ...
4-116 5.17e-06

RUN domain found in pleckstrin homology domain-containing family M member 2 (PLEKHM2) and similar proteins; PLEKHM2, also called PH domain-containing family M member 2, or Salmonella-induced filaments A (SifA) and Kinesin-Interacting Protein (SKIP), is the lysosome, melanosome and lytic granule cargo adaptor that controls lysosome positioning using a composite kinesin-1 heavy and light chain-binding domain. In addition to kinesin-1, it also interacts with several Rabs to affect endosomal trafficking. This model represents the RUN domain of PLEKHM2.


Pssm-ID: 439042  Cd Length: 145  Bit Score: 47.24  E-value: 5.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336   4 ILYHGLIHDQVCcrqadYWQFVKDIRWLSphsalhVEKFISLHESDQSDTDsvseRAVAelWLQHSLQCHCLSAQLRPLL 83
Cdd:cd17680   44 ALLHGLRRGNRG-----YWPFVKEFTHKE------TIKQIENLPNVTTDLG----RGRA--WLYLALNEGSLESYLRSFL 106
                         90       100       110
                 ....*....|....*....|....*....|...
gi 568994336  84 GDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVE 116
Cdd:cd17680  107 ENRKLVKKFYHKHALLRDSQRLELLLTLLSGLE 139
RUN_SNX29 cd17689
RUN domain found in sorting nexin-29 (SNX29) and similar proteins; SNX29, also called RUN ...
20-109 2.56e-04

RUN domain found in sorting nexin-29 (SNX29) and similar proteins; SNX29, also called RUN domain-containing protein 2A (RUNDC2A), belongs to the sorting nexin family. Sorting nexins are a large group of proteins that are localized in the cytoplasm and have the potential for membrane association either through their lipid-binding PX domain, a phospholipid-binding motif, or through protein-protein interactions with membrane-associated protein complexes. Some sorting nexin family members have been shown to facilitate protein sorting. This model contains the RUN domain of SNX29.


Pssm-ID: 439051  Cd Length: 166  Bit Score: 42.60  E-value: 2.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  20 DYWQFVKDIrwLSPHSalhVEKFISLHesdQSDTDSVSERAvaelWLQHSLQCHCLSAQLRPLLGDRQYIRKFYTETAFL 99
Cdd:cd17689   73 TFWPFVKEH--LTKHE---LERFELLK---NIWTDIGRGRA----WLRSALNEHSLERYLHILLSNENLLRQYYEDWAFL 140
                         90
                 ....*....|
gi 568994336 100 LsDAHVTAML 109
Cdd:cd17689  141 R-DEERSSML 149
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
137-347 1.22e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.60  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  137 SPLLVTKS----QSLTALPGSTYTPPASYAQHSyfgSSSSLQSMPQSSHSSERRSTSFSLSGPSWQPQED---------- 202
Cdd:pfam05109 431 SPTLNTTGfaapNTTTGLPSSTHVPTNLTAPAS---TGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNgteskapdmt 507
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  203 ----------RECLSPAETQTTPAPLPSDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPA 272
Cdd:pfam05109 508 sptsavttptPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPT 587
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568994336  273 PH------GRTASCESHSSNGESSSSHLFSSSSSQKLESAASSLGDQEEGRQSQAGSVLRRSSFSEgQTAPVASGTKKSH 346
Cdd:pfam05109 588 PNatsptvGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISE-TLSPSTSDNSTSH 666

                  .
gi 568994336  347 I 347
Cdd:pfam05109 667 M 667
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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