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Conserved domains on  [gi|568983729|ref|XP_006517486|]
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centrosomal protein of 72 kDa isoform X4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 55-144 2.37e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 69.43  E-value: 2.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  55 LKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFR-LHTLLELQDVDFRLNPVVKNeSDYRLFVVHMLPKLRQL 133
Cdd:cd21340  122 LRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPVCKK-PKYRDKIILASKSLEVL 200

                         90
                 ....*....|.
gi 568983729 134 DDRPVRESERK 144
Cdd:cd21340  201 DGKEITDTERQ 211
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
396-551 3.77e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


:

Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.97  E-value: 3.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 396 LSLENKTLQSRLAEQQQQYTATVTKMTAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTS-TALTLQIT 474
Cdd:COG4372   18 LRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQlQAAQAELA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 475 GLQASMKQLSGEVVELKQHVEH----YDKIQELTQMLQESHSSL---VSTNEHLLQELSRTRAQHRAEVEQMRWSFQEFK 547
Cdd:COG4372   98 QAQEELESLQEEAEELQEELEElqkeRQDLEQQRKQLEAQIAELqseIAEREEELKELEEQLESLQEELAALEQELQALS 177


                 ....
gi 568983729 548 KTTA 551
Cdd:COG4372  178 EAEA 181
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 55-144 2.37e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 69.43  E-value: 2.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  55 LKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFR-LHTLLELQDVDFRLNPVVKNeSDYRLFVVHMLPKLRQL 133
Cdd:cd21340  122 LRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPVCKK-PKYRDKIILASKSLEVL 200

                         90
                 ....*....|.
gi 568983729 134 DDRPVRESERK 144
Cdd:cd21340  201 DGKEITDTERQ 211
LRR_9 pfam14580
Leucine-rich repeat;
51-150 2.41e-11

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 62.47  E-value: 2.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729   51 HLTALKSLDLSRNSLVSL-EGI-QYLVSLESLNLYYNCISSLAEVFRLHTLLELQDVDFRLNPVVkNESDYRLFVVHMLP 128
Cdd:pfam14580  62 LLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT-NKPHYRLYVIYKVP 140

                          90       100
                  ....*....|....*....|..
gi 568983729  129 KLRQLDDRPVRESERKASQLHF 150
Cdd:pfam14580 141 QLRLLDFRKVKQKERQAAEKMF 162
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-112 1.15e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 60.72  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFRLHtllELQD 104
Cdd:COG4886  203 NLTNLEELDLSGN---QLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT---NLKT 276


                 ....*...
gi 568983729 105 VDFRLNPV 112
Cdd:COG4886  277 LDLSNNQL 284
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
396-551 3.77e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.97  E-value: 3.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 396 LSLENKTLQSRLAEQQQQYTATVTKMTAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTS-TALTLQIT 474
Cdd:COG4372   18 LRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQlQAAQAELA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 475 GLQASMKQLSGEVVELKQHVEH----YDKIQELTQMLQESHSSL---VSTNEHLLQELSRTRAQHRAEVEQMRWSFQEFK 547
Cdd:COG4372   98 QAQEELESLQEEAEELQEELEElqkeRQDLEQQRKQLEAQIAELqseIAEREEELKELEEQLESLQEELAALEQELQALS 177


                 ....
gi 568983729 548 KTTA 551
Cdd:COG4372  178 EAEA 181
LRRcap smart00446
occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich ...
 117-134 1.20e-03

occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.


Pssm-ID: 197729  Cd Length: 19  Bit Score: 36.13  E-value: 1.20e-03
                           10
                   ....*....|....*...
gi 568983729   117 SDYRLFVVHMLPKLRQLD 134
Cdd:smart00446   2 AHYREKVIELLPQLRKLD 19
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 399-509 2.78e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.77  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  399 ENKTLQSR---LAEQQQQYTATVTKMTAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTstaltlQITG 475
Cdd:TIGR04523 212 KNKSLESQiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK------KIKE 285

                          90       100       110
                  ....*....|....*....|....*....|....
gi 568983729  476 LQASMKQLSGEVVELKQhvehyDKIQELTQMLQE 509
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNN-----QKEQDWNKELKS 314
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
 363-480 8.04e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 38.50  E-value: 8.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 363 EAFLAQAKHVLSSLQEF-TATRD------------SSALEKEGIGYLSLENKTLQSRLAEQQQQYTAtvtKMTAELNNTK 429
Cdd:cd22656  131 KKYQDKAAKVVDKLTDFeNQTEKdqtaletlekalKDLLTDEGGAIARKEIKDLQKELEKLNEEYAA---KLKAKIDELK 207

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 568983729 430 RELDTLRQHLdksleenshlksllynvKKEVKTADTSTALTLQITGLQASM 480
Cdd:cd22656  208 ALIADDEAKL-----------------AAALRLIADLTAADTDLDNLLALI 241
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 55-144 2.37e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 69.43  E-value: 2.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  55 LKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFR-LHTLLELQDVDFRLNPVVKNeSDYRLFVVHMLPKLRQL 133
Cdd:cd21340  122 LRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDlLSSWPSLRELDLTGNPVCKK-PKYRDKIILASKSLEVL 200

                         90
                 ....*....|.
gi 568983729 134 DDRPVRESERK 144
Cdd:cd21340  201 DGKEITDTERQ 211
LRR_9 pfam14580
Leucine-rich repeat;
51-150 2.41e-11

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 62.47  E-value: 2.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729   51 HLTALKSLDLSRNSLVSL-EGI-QYLVSLESLNLYYNCISSLAEVFRLHTLLELQDVDFRLNPVVkNESDYRLFVVHMLP 128
Cdd:pfam14580  62 LLRRLKTLLLNNNRICRIgEGLgEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT-NKPHYRLYVIYKVP 140

                          90       100
                  ....*....|....*....|..
gi 568983729  129 KLRQLDDRPVRESERKASQLHF 150
Cdd:pfam14580 141 QLRLLDFRKVKQKERQAAEKMF 162
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-112 1.15e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 60.72  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFRLHtllELQD 104
Cdd:COG4886  203 NLTNLEELDLSGN---QLTDLPEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLT---NLKT 276


                 ....*...
gi 568983729 105 VDFRLNPV 112
Cdd:COG4886  277 LDLSNNQL 284
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-102 4.15e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.79  E-value: 4.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSL-EGIQYLVSLESLNLYYNCISSLAEVF-RLHTLLEL 102
Cdd:COG4886  134 NLTNLKELDLSNN---QLTDLPEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLPEPLgNLTNLEEL 210
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-102 2.45e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 56.48  E-value: 2.45e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568983729  25 DLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSL-EGIQYLVSLESLNLYYNCISSLAEVFRLHTLLEL 102
Cdd:COG4886  180 NLTNLKELDLSNN---QITDLPEPLGNLTNLEELDLSGNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEEL 255
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
18-102 4.11e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 55.71  E-value: 4.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  18 SGLGPHRDLAELRSLSIPGTyqeKITHLGNSLMHLTALKSLDLSRNSLVSL-EGIQYLVSLESLNLYYNCISSL-AEVFR 95
Cdd:COG4886  104 SGNEELSNLTNLESLDLSGN---QLTDLPEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGN 180


                 ....*..
gi 568983729  96 LHTLLEL 102
Cdd:COG4886  181 LTNLKEL 187
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
25-90 1.57e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 44.15  E-value: 1.57e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568983729  25 DLAELRSLSIPGTyqeKITHLGnSLMHLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSL 90
Cdd:COG4886  226 NLTNLETLDLSNN---QLTDLP-ELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDL 287
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
396-551 3.77e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.97  E-value: 3.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 396 LSLENKTLQSRLAEQQQQYTATVTKMTAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTS-TALTLQIT 474
Cdd:COG4372   18 LRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQlQAAQAELA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 475 GLQASMKQLSGEVVELKQHVEH----YDKIQELTQMLQESHSSL---VSTNEHLLQELSRTRAQHRAEVEQMRWSFQEFK 547
Cdd:COG4372   98 QAQEELESLQEEAEELQEELEElqkeRQDLEQQRKQLEAQIAELqseIAEREEELKELEEQLESLQEELAALEQELQALS 177


                 ....
gi 568983729 548 KTTA 551
Cdd:COG4372  178 EAEA 181
LRR_8 pfam13855
Leucine rich repeat;
28-85 6.28e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 38.27  E-value: 6.28e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568983729   28 ELRSLSIPGTYqekITHLGN-SLMHLTALKSLDLSRNSLVSLEG--IQYLVSLESLNLYYN 85
Cdd:pfam13855   2 NLRSLDLSNNR---LTSLDDgAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGN 59
LRRcap smart00446
occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich ...
 117-134 1.20e-03

occurring C-terminal to leucine-rich repeats; A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.


Pssm-ID: 197729  Cd Length: 19  Bit Score: 36.13  E-value: 1.20e-03
                           10
                   ....*....|....*...
gi 568983729   117 SDYRLFVVHMLPKLRQLD 134
Cdd:smart00446   2 AHYREKVIELLPQLRKLD 19
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 40-103 1.35e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 40.54  E-value: 1.35e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568983729  40 EKITHLGNslmhLTALKSLDLSRNSLVSLEGIQYLVSLESLNLYYNCISSLAEVFRLHTLLELQ 103
Cdd:cd21340   37 TKIENLEF----LTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLTNLEELH 96
LRR_8 pfam13855
Leucine rich repeat;
55-90 1.42e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.12  E-value: 1.42e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 568983729   55 LKSLDLSRNSLVSLEG--IQYLVSLESLNLYYNCISSL 90
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTL 40
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 53-85 1.90e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 36.45  E-value: 1.90e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 568983729   53 TALKSLDLSRNSLVSLEGIQYLVSLESLNLYYN 85
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 399-509 2.78e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.77  E-value: 2.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729  399 ENKTLQSR---LAEQQQQYTATVTKMTAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTstaltlQITG 475
Cdd:TIGR04523 212 KNKSLESQiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK------KIKE 285

                          90       100       110
                  ....*....|....*....|....*....|....
gi 568983729  476 LQASMKQLSGEVVELKQhvehyDKIQELTQMLQE 509
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNN-----QKEQDWNKELKS 314
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 395-540 5.54e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.53  E-value: 5.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 395 YLSLENKTLQSRLAEQQQQYTATVTKM---TAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTS-TALT 470
Cdd:COG1196  229 LLLLKLRELEAELEELEAELEELEAELeelEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDiARLE 308

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568983729 471 LQITGLQASMKQLSGEVVELKQHVE-HYDKIQELTQMLQESHSSLVSTNEHLLQELSRTRAQHRAEVEQMR 540
Cdd:COG1196  309 ERRRELEERLEELEEELAELEEELEeLEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
389-539 5.56e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 39.61  E-value: 5.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 389 EKEGIGYLSLENKTLQSRLAEQQQQYTATvtkmTAELNNTKRELDTLRQHLDKSLEENShlksllynvkkEVKTADTSTA 468
Cdd:COG3206  203 QKNGLVDLSEEAKLLLQQLSELESQLAEA----RAELAEAEARLAALRAQLGSGPDALP-----------ELLQSPVIQQ 267

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568983729 469 LTLQITGLQASMKQLSG-------EVVELKQHVEHYDK-IQELTQMLQESHSSLVSTNEHLLQELSRTRAQHRAEVEQM 539
Cdd:COG3206  268 LRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
 363-480 8.04e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 38.50  E-value: 8.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983729 363 EAFLAQAKHVLSSLQEF-TATRD------------SSALEKEGIGYLSLENKTLQSRLAEQQQQYTAtvtKMTAELNNTK 429
Cdd:cd22656  131 KKYQDKAAKVVDKLTDFeNQTEKdqtaletlekalKDLLTDEGGAIARKEIKDLQKELEKLNEEYAA---KLKAKIDELK 207

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 568983729 430 RELDTLRQHLdksleenshlksllynvKKEVKTADTSTALTLQITGLQASM 480
Cdd:cd22656  208 ALIADDEAKL-----------------AAALRLIADLTAADTDLDNLLALI 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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