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Conserved domains on  [gi|568943198|ref|XP_006506829|]
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protein KRBA1 isoform X9 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 250-293 2.15e-08

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 50.87  E-value: 2.15e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 568943198   250 GSMGTGTLPENSPLQGLINCLKEILVPRPQHRGTAPDLPPSLPG 293
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQP 44
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 363-401 7.47e-05

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 40.86  E-value: 7.47e-05
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 568943198   363 ASRASSSPLEALEACLKGIPPGGSSPLQsLAISWSRSPQ 401
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQ 43
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
 697-814 4.86e-04

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 44.30  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568943198  697 STGRAEEKPH-PPRREDGAERTRQPGPvtnaegkgAAAGHPSPAPQLEEKPE-PKGTEDSRDLEPGHRPPSAaaRTQGKL 774
Cdd:PTZ00449  537 SKESDEPKEGgKPGETKEGEVGKKPGP--------AKEHKPSKIPTLSKKPEfPKDPKHPKDPEEPKKPKRP--RSAQRP 606

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 568943198  775 LSGDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQE 814
Cdd:PTZ00449  607 TRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPE 646
KRBA1 super family cl21135
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 480-511 5.40e-04

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


The actual alignment was detected with superfamily member pfam15287:

Pssm-ID: 464615  Cd Length: 44  Bit Score: 38.55  E-value: 5.40e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568943198   480 GYLPGNSPLQGLENCLREIPIPRPQAAWPCSS 511
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
 
Name Accession Description Interval E-value
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 250-293 2.15e-08

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 50.87  E-value: 2.15e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 568943198   250 GSMGTGTLPENSPLQGLINCLKEILVPRPQHRGTAPDLPPSLPG 293
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQP 44
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 363-401 7.47e-05

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 40.86  E-value: 7.47e-05
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 568943198   363 ASRASSSPLEALEACLKGIPPGGSSPLQsLAISWSRSPQ 401
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQ 43
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 697-814 4.86e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 44.30  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568943198  697 STGRAEEKPH-PPRREDGAERTRQPGPvtnaegkgAAAGHPSPAPQLEEKPE-PKGTEDSRDLEPGHRPPSAaaRTQGKL 774
Cdd:PTZ00449  537 SKESDEPKEGgKPGETKEGEVGKKPGP--------AKEHKPSKIPTLSKKPEfPKDPKHPKDPEEPKKPKRP--RSAQRP 606

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 568943198  775 LSGDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQE 814
Cdd:PTZ00449  607 TRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPE 646
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 480-511 5.40e-04

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 38.55  E-value: 5.40e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568943198   480 GYLPGNSPLQGLENCLREIPIPRPQAAWPCSS 511
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
 
Name Accession Description Interval E-value
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 250-293 2.15e-08

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 50.87  E-value: 2.15e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 568943198   250 GSMGTGTLPENSPLQGLINCLKEILVPRPQHRGTAPDLPPSLPG 293
Cdd:pfam15287    1 GPMAQGASPGSSPLQGLINCLKEILVPGPQHPQPATSLSPPPQP 44
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 363-401 7.47e-05

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 40.86  E-value: 7.47e-05
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 568943198   363 ASRASSSPLEALEACLKGIPPGGSSPLQsLAISWSRSPQ 401
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQ-PATSLSPPPQ 43
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 697-814 4.86e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 44.30  E-value: 4.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568943198  697 STGRAEEKPH-PPRREDGAERTRQPGPvtnaegkgAAAGHPSPAPQLEEKPE-PKGTEDSRDLEPGHRPPSAaaRTQGKL 774
Cdd:PTZ00449  537 SKESDEPKEGgKPGETKEGEVGKKPGP--------AKEHKPSKIPTLSKKPEfPKDPKHPKDPEEPKKPKRP--RSAQRP 606

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 568943198  775 LSGDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQE 814
Cdd:PTZ00449  607 TRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPE 646
KRBA1 pfam15287
KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is ...
 480-511 5.40e-04

KRBA1 family repeat; KRBA1 is a short repeating motif found in mammalian proteins. It is characterized by a highly conserved sequence of residues, SSPLxxLxxCLK. The function of the repeat, which can be present in up to seven copies, is unknown as is the function of the full length proteins.


Pssm-ID: 464615  Cd Length: 44  Bit Score: 38.55  E-value: 5.40e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568943198   480 GYLPGNSPLQGLENCLREIPIPRPQAAWPCSS 511
Cdd:pfam15287    6 GASPGSSPLQGLINCLKEILVPGPQHPQPATS 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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