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Conserved domains on  [gi|568942138|ref|XP_006506317|]
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fructose-2,6-bisphosphatase TIGAR isoform X1 [Mus musculus]

Protein Classification

histidine phosphatase family protein( domain architecture ID 27749)

histidine phosphatase family protein contains a conserved His residue that is transiently phosphorylated during the catalytic cycle

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
His_Phos_1 super family cl47525
Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so ...
3-163 1.05e-10

Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.


The actual alignment was detected with superfamily member pfam00300:

Pssm-ID: 459751 [Multi-domain]  Cd Length: 194  Bit Score: 57.99  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138    3 VKYDSRLRERMYGVAEGKPLSELRAM----AKAAGEECPMFTPPGGETVEQVKMRGKDFFDFICqlilgkagqresvlpg 78
Cdd:pfam00300  71 VEIDPRLREIDFGDWEGLTFEEIAERypeeYDAWLADPADYRPPGGESLADVRARVRAALEELA---------------- 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138   79 apgsglesslaevfpvgkhgslgANPKGGTlglaasILVVSHGAYMRSLFGYFlsdLRCSLPGARdKLELssitPNTGIS 158
Cdd:pfam00300 135 -----------------------ARHPGKT------VLVVSHGGVIRALLAHL---LGLPLEALR-RFPL----DNASLS 177

                  ....*
gi 568942138  159 VFIID 163
Cdd:pfam00300 178 ILEFD 182
 
Name Accession Description Interval E-value
His_Phos_1 pfam00300
Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so ...
3-163 1.05e-10

Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.


Pssm-ID: 459751 [Multi-domain]  Cd Length: 194  Bit Score: 57.99  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138    3 VKYDSRLRERMYGVAEGKPLSELRAM----AKAAGEECPMFTPPGGETVEQVKMRGKDFFDFICqlilgkagqresvlpg 78
Cdd:pfam00300  71 VEIDPRLREIDFGDWEGLTFEEIAERypeeYDAWLADPADYRPPGGESLADVRARVRAALEELA---------------- 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138   79 apgsglesslaevfpvgkhgslgANPKGGTlglaasILVVSHGAYMRSLFGYFlsdLRCSLPGARdKLELssitPNTGIS 158
Cdd:pfam00300 135 -----------------------ARHPGKT------VLVVSHGGVIRALLAHL---LGLPLEALR-RFPL----DNASLS 177

                  ....*
gi 568942138  159 VFIID 163
Cdd:pfam00300 178 ILEFD 182
PhoE COG0406
Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];
1-163 3.47e-09

Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];


Pssm-ID: 440175 [Multi-domain]  Cd Length: 195  Bit Score: 53.79  E-value: 3.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138   1 MAVKYDSRLRERMYGVAEGKPLSELRA----MAKAAGEECPMFTPPGGETVEQVKMRGKDFFDFICqlilgkagqresvl 76
Cdd:COG0406   72 LPVEVDPRLREIDFGDWEGLTFAELEArypeALAAWLADPAEFRPPGGESLADVQARVRAALEELL-------------- 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138  77 pgapgsglesslaevfpvgkhgslgANPKGGTlglaasILVVSHGAYMRSLFGYFLsdlrcslpGARDKLELSSITPNTG 156
Cdd:COG0406  138 -------------------------ARHPGGT------VLVVTHGGVIRALLAHLL--------GLPLEAFWRLRIDNAS 178

                 ....*..
gi 568942138 157 ISVFIID 163
Cdd:COG0406  179 VTVLEFD 185
PGAM smart00855
Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase ...
8-127 9.19e-06

Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate... Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.


Pssm-ID: 214859 [Multi-domain]  Cd Length: 158  Bit Score: 43.99  E-value: 9.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138     8 RLRERMYGVAEGKPLSELRAMAKAAGEECPM-------FTPPGGETVEQVKMRGKDFFDFICQLILGKAGqresvlpgap 80
Cdd:smart00855  75 GLRERDFGAWEGLTWDEIAAKYPEEYLAAWRdpydpapPAPPGGESLADLVERVEPALDELIATADASGQ---------- 144
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 568942138    81 gsglesslaevfpvgkhgslganpkggtlglaaSILVVSHGAYMRSL 127
Cdd:smart00855 145 ---------------------------------NVLIVSHGGVIRAL 158
HP_PGM_like cd07067
Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly ...
114-163 4.19e-03

Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG.


Pssm-ID: 132718 [Multi-domain]  Cd Length: 153  Bit Score: 36.15  E-value: 4.19e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 568942138 114 SILVVSHGAYMRSLFGYFLsdlrcslpGARDKLELSSITPNTGISVFIID 163
Cdd:cd07067  101 NVLIVSHGGVLRALLAYLL--------GLSDEDILRLNLPNGSISVLELD 142
 
Name Accession Description Interval E-value
His_Phos_1 pfam00300
Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so ...
3-163 1.05e-10

Histidine phosphatase superfamily (branch 1); The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.


Pssm-ID: 459751 [Multi-domain]  Cd Length: 194  Bit Score: 57.99  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138    3 VKYDSRLRERMYGVAEGKPLSELRAM----AKAAGEECPMFTPPGGETVEQVKMRGKDFFDFICqlilgkagqresvlpg 78
Cdd:pfam00300  71 VEIDPRLREIDFGDWEGLTFEEIAERypeeYDAWLADPADYRPPGGESLADVRARVRAALEELA---------------- 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138   79 apgsglesslaevfpvgkhgslgANPKGGTlglaasILVVSHGAYMRSLFGYFlsdLRCSLPGARdKLELssitPNTGIS 158
Cdd:pfam00300 135 -----------------------ARHPGKT------VLVVSHGGVIRALLAHL---LGLPLEALR-RFPL----DNASLS 177

                  ....*
gi 568942138  159 VFIID 163
Cdd:pfam00300 178 ILEFD 182
PhoE COG0406
Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];
1-163 3.47e-09

Broad specificity phosphatase PhoE [Carbohydrate transport and metabolism];


Pssm-ID: 440175 [Multi-domain]  Cd Length: 195  Bit Score: 53.79  E-value: 3.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138   1 MAVKYDSRLRERMYGVAEGKPLSELRA----MAKAAGEECPMFTPPGGETVEQVKMRGKDFFDFICqlilgkagqresvl 76
Cdd:COG0406   72 LPVEVDPRLREIDFGDWEGLTFAELEArypeALAAWLADPAEFRPPGGESLADVQARVRAALEELL-------------- 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138  77 pgapgsglesslaevfpvgkhgslgANPKGGTlglaasILVVSHGAYMRSLFGYFLsdlrcslpGARDKLELSSITPNTG 156
Cdd:COG0406  138 -------------------------ARHPGGT------VLVVTHGGVIRALLAHLL--------GLPLEAFWRLRIDNAS 178

                 ....*..
gi 568942138 157 ISVFIID 163
Cdd:COG0406  179 VTVLEFD 185
PGAM smart00855
Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase ...
8-127 9.19e-06

Phosphoglycerate mutase family; Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate... Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.


Pssm-ID: 214859 [Multi-domain]  Cd Length: 158  Bit Score: 43.99  E-value: 9.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568942138     8 RLRERMYGVAEGKPLSELRAMAKAAGEECPM-------FTPPGGETVEQVKMRGKDFFDFICQLILGKAGqresvlpgap 80
Cdd:smart00855  75 GLRERDFGAWEGLTWDEIAAKYPEEYLAAWRdpydpapPAPPGGESLADLVERVEPALDELIATADASGQ---------- 144
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 568942138    81 gsglesslaevfpvgkhgslganpkggtlglaaSILVVSHGAYMRSL 127
Cdd:smart00855 145 ---------------------------------NVLIVSHGGVIRAL 158
HP_PGM_like cd07067
Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly ...
114-163 4.19e-03

Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG.


Pssm-ID: 132718 [Multi-domain]  Cd Length: 153  Bit Score: 36.15  E-value: 4.19e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 568942138 114 SILVVSHGAYMRSLFGYFLsdlrcslpGARDKLELSSITPNTGISVFIID 163
Cdd:cd07067  101 NVLIVSHGGVLRALLAYLL--------GLSDEDILRLNLPNGSISVLELD 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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