|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-958 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1032.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 390 KISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFS 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 470 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 549
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDL 629
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 630 REKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRI 709
Cdd:pfam10174 481 KEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRI 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 710 QQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEE 789
Cdd:pfam10174 561 RLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 790 ARRREDSLSDSSQQlqdslrkkddrieeleealresvqitaeremvlaqeesartnaeKQVEELLMAMEKVKQELESMKA 869
Cdd:pfam10174 641 ARRREDNLADNSQQ--------------------------------------------LQLEELMGALEKTRQELDATKA 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 870 KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS-KKKTQEEVAALKREKDRLVQQL 948
Cdd:pfam10174 677 RLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSkKKKTQEEVMALKREKDRLVHQL 756
|
810
....*....|
gi 568940319 949 KQQTQNRMKL 958
Cdd:pfam10174 757 KQQTQNRMKL 766
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-965 |
9.64e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 9.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLES-LLEQKEKENNM 359
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKeLYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 360 LREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNK 439
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD 519
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 520 MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK------------------------- 574
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlselisvdegyeaa 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 575 -------SLQADTTNTDTALTTLEEALADKE---RTIERLKEQRDR----DEREKQEEIDTYKKDLKDLREKVSLLQGDL 640
Cdd:TIGR02168 539 ieaalggRLQAVVVENLNAAKKAIAFLKQNElgrVTFLPLDSIKGTeiqgNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 641 SEKEASLLDIKEHASSLASSG-LKKDSRLKTLE-------------------------IALEQKKEECLKMESQLKKAHE 694
Cdd:TIGR02168 619 SYLLGGVLVVDDLDNALELAKkLRPGYRIVTLDgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 695 ATLEARaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEkndkdkkiAELESLTSRQVKDQNKKVANLKH 774
Cdd:TIGR02168 699 ALAELR------KELEELEEELEQLRKELEELSRQISALRKDLARLEAE--------VEQLEERIAQLSKELTELEAEIE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 775 KEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELL 854
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 855 MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEV 934
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
810 820 830
....*....|....*....|....*....|.
gi 568940319 935 AALKREKDRLVQQLKQQTQNRMKLMADNYED 965
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
271-955 |
1.82e-19 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 95.21 E-value: 1.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 271 HAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESikkllemlQSKGLSAKATEEDHERTRRLAEAEMhvhhlESLL 350
Cdd:PTZ00121 1076 YKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEE--------ARKAEEAKKKAEDARKAEEARKAED-----ARKA 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE--REEEMKQMEV 428
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEerKAEEARKAED 1222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 429 YRSHSKFMKNKIGQVKQELSRKDTEllalQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKET 508
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE----ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKA 1298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 509 MLNKKTKQIQDMAEEKGtqagEIHDLKDMLDVKERKVNVLQKKIEnlqEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAK----KADEAKKKAEEAKKKADAAKKKAE---EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 589 TLEEALADKERTIERLKEQRDRDEREKQEEIDtyKKDLKDLREKVSllqgdlSEKEASLLDIKEHASSLASSGLKKDSRL 668
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEED--KKKADELKKAAA------AKKKADEAKKKAEEKKKADEAKKKAEEA 1443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 669 KTLEiALEQKKEECLKMESQLKKAHEA--TLEARASPEMSDRIQQLER---EISRYKDESSKAQTEVDRLLEILKEVENE 743
Cdd:PTZ00121 1444 KKAD-EAKKKAEEAKKAEEAKKKAEEAkkADEAKKKAEEAKKADEAKKkaeEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 744 KNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALR 823
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 824 ESVQITAERemvLAQEESARTNAEKQVEEllmamEKVKQELESMKAKLSSTQQSLAE--KETHLTNLRAERRKHLEEVLE 901
Cdd:PTZ00121 1603 EEKKMKAEE---AKKAEEAKIKAEELKKA-----EEEKKKVEQLKKKEAEEKKKAEElkKAEEENKIKAAEEAKKAEEDK 1674
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568940319 902 MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 955
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
399-950 |
5.70e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 5.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 399 RDLEEEIQMLKSNGALSseEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVL 478
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 479 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ 558
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 559 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQG 638
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 639 DLSEKEASLLDIKEHASSLAsSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISR 718
Cdd:COG1196 454 LEEEEEALLELLAELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 719 YKDESSKAQTE---------VDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEE 789
Cdd:COG1196 533 EAAYEAALEAAlaaalqnivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 790 ARRREDSLSDSSQQL-QDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 868
Cdd:COG1196 613 ARYYVLGDTLLGRTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 869 AKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAA----ISEKDANIALLELSSSKKKTQEEVAALKREKDRL 944
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEReellEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*.
gi 568940319 945 VQQLKQ 950
Cdd:COG1196 773 EREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
378-944 |
1.29e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.46 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 378 KALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLAL 457
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 458 QTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 537
Cdd:COG1196 315 EERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 538 LDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQE 617
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 618 EidtyKKDLKDLREKVSLLQGDLSEKEASLLDIKEhasSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATL 697
Cdd:COG1196 468 L----LEEAALLEAALAELLEELAEAAARLLLLLE---AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 698 EARASPEMSDRIQQLEREISRYKDESSKAQTEvdRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQ 777
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 778 VEkkkSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAM 857
Cdd:COG1196 619 GD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 858 EKVKQELESMKAklsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSS--SKKKTQEEVA 935
Cdd:COG1196 696 EEALLAEEEEER-----ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppDLEELERELE 770
|
....*....
gi 568940319 936 ALKREKDRL 944
Cdd:COG1196 771 RLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
272-945 |
6.24e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 86.66 E-value: 6.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLN------ARDESIKKLLEMLQSKGLSAKATE-EDHER-----TRRLAEA 339
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLErlrrerEKAERYQALLKEKREYEGYELLKEkEALERqkeaiERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 340 EMHVHHLESLLEQKEKENN---MLREEMHRRFEnAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIqmlksngalss 416
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEeieQLLEELNKKIK-DLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL----------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 417 EEREEEMKQMEVyrshskfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV 496
Cdd:TIGR02169 318 EDAEERLAKLEA----------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 497 DALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL 576
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 577 QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTyKKDLKDLREKVSLLQGDLSEKE------------ 644
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKASIQGVHGTVAQLGSVGeryataievaag 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 645 ----------------------------ASLLDI-KEHASSLASSGLKKDS----------------------------- 666
Cdd:TIGR02169 547 nrlnnvvveddavakeaiellkrrkagrATFLPLnKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvv 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 667 -------------RLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEVDR 732
Cdd:TIGR02169 627 edieaarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 733 LL-----------EILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR------ED 795
Cdd:TIGR02169 707 LSqelsdasrkigEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEealndlEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 796 SLSDSS-QQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST 874
Cdd:TIGR02169 787 RLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568940319 875 QQSLAEK-------ETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLV 945
Cdd:TIGR02169 867 EEELEELeaalrdlESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
442-966 |
1.26e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 1.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 442 QVKQELSRKDTELLALqtkletltnqfsdskqHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 521
Cdd:COG1196 217 ELKEELKELEAELLLL----------------KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 522 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 601
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 602 ERLKEQRDRDER---EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQK 678
Cdd:COG1196 361 AEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 679 KEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKND----------- 746
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELlAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaalllaglr 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 747 ----------KDKKIAELESLTSRQVKDQNKKVANLK--------HKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSL 808
Cdd:COG1196 521 glagavavliGVEAAYEAALEAALAAALQNIVVEDDEvaaaaieyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 809 RK-KDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLmameKVKQELESMKAKLSSTQQSLAEKETHLTN 887
Cdd:COG1196 601 VDlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR----EVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568940319 888 LRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDD 966
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-871 |
7.64e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 7.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 230 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLESLLEQKEKENNMLREEMHRrfenapDSAKTKALQTVIEMKDS 389
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEE------LEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 390 KISSMERGLRDLEEEIQMLKSngALSSEEREEEmkqmevyrshskfmknkigQVKQELSRKDTELLALQTKLETLTNQFS 469
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEA--ELAEAEEELE-------------------ELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 470 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 549
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 550 KKIENLQEQLRDKE-KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDErekqeeidtykkDLKD 628
Cdd:COG1196 491 ARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE------------DDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 629 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDR 708
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 709 IQQLEREIsrykDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLE 788
Cdd:COG1196 639 AVTLAGRL----REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 789 EARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL----LMAME---KVK 861
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEeyeELE 794
|
650
....*....|
gi 568940319 862 QELESMKAKL 871
Cdd:COG1196 795 ERYDFLSEQR 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-958 |
1.37e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 302 LNARDESIKKLLEmlQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLRE-----EMHRRFENAPDSAK 376
Cdd:TIGR02168 150 IEAKPEERRAIFE--EAAGIS-KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERqaekaERYKELKAELRELE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 377 T-------KALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSR 449
Cdd:TIGR02168 227 LallvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 450 KDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAG 529
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 530 EIHDLkdmldvkERKVNVLQKKIENLqeqlrdkEKQMSSLKERVKSLQADTTNTDTA----------------LTTLEEA 593
Cdd:TIGR02168 387 KVAQL-------ELQIASLNNEIERL-------EARLERLEDRRERLQQEIEELLKKleeaelkelqaeleelEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 594 LADKERTIERLKEQRDRdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKE---ASLLDIKEHASSLA------SSGLKK 664
Cdd:TIGR02168 453 QEELERLEEALEELREE-LEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALLKNQSGLSgilgvlSELISV 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 665 DSRLKT-LEIALE--------QKKEECLKMESQLKKAH-------EATLEARASPEMSDRIQQLERE-----ISRYKDES 723
Cdd:TIGR02168 532 DEGYEAaIEAALGgrlqavvvENLNAAKKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREILKNIEgflgvAKDLVKFD 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 724 SKAQTEVDRLLEILKEVEN--EKNDKDKKIAELESLTSRQ----------VKDQNKKVANLKHKEQvEKKKSAQMLEEAR 791
Cdd:TIGR02168 612 PKLRKALSYLLGGVLVVDDldNALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILERRR-EIEELEEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 792 RREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 871
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 872 SSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 951
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
....*..
gi 568940319 952 TQNRMKL 958
Cdd:TIGR02168 851 SEDIESL 857
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
373-942 |
1.32e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 78.52 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 373 DSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT 452
Cdd:TIGR04523 66 DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLT 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 453 ELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIH 532
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES----QIS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 533 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE 612
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 613 REKQEEID-TYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEEC--LKMESQL 689
Cdd:TIGR04523 302 NQKEQDWNkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIekLKKENQS 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 690 KKAHEATLEARAS------PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEI-------LKEVENEKNDKDKKIAELES 756
Cdd:TIGR04523 382 YKQEIKNLESQINdleskiQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETiiknnseIKDLTNQDSVKELIIKNLDN 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 757 LTSRQvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL 836
Cdd:TIGR04523 462 TRESL-ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 837 AQEES---------ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAL 907
Cdd:TIGR04523 541 SDLEDelnkddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
570 580 590
....*....|....*....|....*....|....*
gi 568940319 908 LAAISEKDANIALLELSSSKKKTQEEVAALKREKD 942
Cdd:TIGR04523 621 KAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
299-903 |
2.45e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 77.80 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 299 KQTLNARDESIKKLLemlqskglsaKATEEDHERTR----RLAEAEMHVHHLESLLEQKEKENNMLREEMHRrfenapds 374
Cdd:PRK03918 171 IKEIKRRIERLEKFI----------KRTENIEELIKekekELEEVLREINEISSELPELREELEKLEKEVKE-------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 375 akTKALQTVIEMKDSKISSMERGLRDLEEEIQMLksngalssEEREEEMKqmevyrSHSKFMKNKIGQVKqELSRKDTEL 454
Cdd:PRK03918 233 --LEELKEEIEELEKELESLEGSKRKLEEKIREL--------EERIEELK------KEIEELEEKVKELK-ELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 455 LalqtKLETLTNQFSDSKQHIEVLKESLtakEQRAAILQTEVDalrlRLEEKETMLNKKTKQIQDMAEEKGtQAGEIHDL 534
Cdd:PRK03918 296 I----KLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK----ELEEKEERLEELKKKLKELEKRLE-ELEERHEL 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 535 KDMLDVKERKVNVLQKKIENLQeqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKE-------- 606
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvc 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 607 QRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKehasslasSGLKKDSRLKTLEIALEQKKEeclkME 686
Cdd:PRK03918 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE--------KVLKKESELIKLKELAEQLKE----LE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 687 SQLKKAHEATLEARASP--EMSDRIQQLEREISRYKDEsskaqtevdrlLEILKEVENEKNDKDKKIAELEsltsRQVKD 764
Cdd:PRK03918 510 EKLKKYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKE-----------LEKLEELKKKLAELEKKLDELE----EELAE 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 765 QNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQ-EESAR 843
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKElEELEK 654
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 844 TNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 903
Cdd:PRK03918 655 KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-652 |
5.74e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 331 ERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDsaktkaLQTVIEMKDSKISSMERGLRDLEEEIQMLKS 410
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------LRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 411 NGALSSEEREEEMKQMEVYRShskfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAA 490
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEE-------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 491 ILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 570
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 571 ERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEidtYKKDLKDLREKVSLLQGDLSEKEASLLDI 650
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
..
gi 568940319 651 KE 652
Cdd:TIGR02168 978 EN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-825 |
1.50e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.49 E-value: 1.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 436 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 515
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 516 QIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA 595
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 596 DKERTIERLKEQRDrderEKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKehasslassglKKDSRLKTLEIAL 675
Cdd:TIGR02169 837 ELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----------KERDELEAQLREL 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 676 EQKKEEcLKMESQLKKAHEATLEARASpEMSDRIQQLEREISRYKDESSKaqtevdrlLEILKEVENEKNDKDKKIAELE 755
Cdd:TIGR02169 902 ERKIEE-LEAQIEKKRKRLSELKAKLE-ALEEELSEIEDPKGEDEEIPEE--------ELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 756 SLTSRQVKDqnkkvanlkhkeqvekkksaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRES 825
Cdd:TIGR02169 972 PVNMLAIQE----------------------YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-818 |
1.78e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 517 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 596
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 597 KERTIERLKEQrdrderekqeeidtykkdLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALE 676
Cdd:TIGR02168 836 TERRLEDLEEQ------------------IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 677 QKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYKDE-SSKAQTEvdrlleiLKEVENEKNDKDKKIAEL 754
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKlAQLELRLEGLEVRIDNLQERlSEEYSLT-------LEEAEALENKIEDDEEEA 970
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568940319 755 EsltsRQVKDQNKKVA-----NLKHKEQVEKKKsaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 818
Cdd:TIGR02168 971 R----RRLKRLENKIKelgpvNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-730 |
1.16e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 388 DSKIssmERGLRDLEEEIQMLKSNGALSSEEREEeMKQMEVYRSHS-KFMKNKIGQVKQELSRKDTELLALQTKLETLTN 466
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAeRYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 467 QFSDSKQHIEVLKEsltakeqraailqtEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ--------AGEIHDLKDML 538
Cdd:TIGR02169 245 QLASLEEELEKLTE--------------EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 539 DVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERL--KEQRDRDE-REK 615
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkEFAETRDElKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 616 QEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 695
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
330 340 350
....*....|....*....|....*....|....*.
gi 568940319 696 TLEARAS-PEMSDRIQQLEREISRYKDESSKAQTEV 730
Cdd:TIGR02169 471 LYDLKEEyDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-948 |
1.38e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-IKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 353 KEKENNMLREEMhrrfenAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSH 432
Cdd:TIGR02169 313 KERELEDAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 433 SKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK 512
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 513 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIEN---LQEQLRDKEK-------QMSSLKER-VKSLQADTT 581
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGgraVEEVLKASIQgvhgtvaQLGSVGERyATAIEVAAG 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 582 NTDTALTTLEEALAdkERTIERLKEQRD-----------RDEREKQEEIDT-----YKKDLKDLREKVS----------- 634
Cdd:TIGR02169 547 NRLNNVVVEDDAVA--KEAIELLKRRKAgratflplnkmRDERRDLSILSEdgvigFAVDLVEFDPKYEpafkyvfgdtl 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 635 ------------------LLQGDLSEKEASLL---DIKEHASSLASSGLKKDSRLKTLEIALEQKKEECL-KMESQLKKA 692
Cdd:TIGR02169 625 vvedieaarrlmgkyrmvTLEGELFEKSGAMTggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQsELRRIENRL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 693 HEATLEARASPEM----SDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK 768
Cdd:TIGR02169 705 DELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 769 VANLKHKEQVEKKKSAQMLEEARRR-EDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsartNAE 847
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRiEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE----NLN 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 848 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLR---------AERRKHLEEVLEMKQEALLAAISEKDANI 918
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkieeleaqIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
730 740 750
....*....|....*....|....*....|
gi 568940319 919 ALLELSSSKKKTQEEVAALKREKDRLVQQL 948
Cdd:TIGR02169 941 GEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
333-746 |
6.35e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 6.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 333 TRRLAEAEMHVHHLESLleqkEKENNMLREEMhRRFENAPDSAKtkalqtviemkdSKISSMERGLRDLEEEIQMLKSNG 412
Cdd:TIGR02169 670 RSEPAELQRLRERLEGL----KRELSSLQSEL-RRIENRLDELS------------QELSDASRKIGEIEKEIEQLEQEE 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 413 ALSSEEREEEMKQMEVyrshskfMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIevLKESLTAKEQRAAIL 492
Cdd:TIGR02169 733 EKLKERLEELEEDLSS-------LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 493 QTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER 572
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 573 VKSLQadttntdtalttleealADKERTIERLKEQRDRdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE 652
Cdd:TIGR02169 884 LGDLK-----------------KERDELEAQLRELERK-IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 653 HASSLASsglkkdsrlktleiaLEQKKEECLKMESQLKKAHEATLEAraspemsdrIQQLEREISRYKDESSKAQT---E 729
Cdd:TIGR02169 946 IPEEELS---------------LEDVQAELQRVEEEIRALEPVNMLA---------IQEYEEVLKRLDELKEKRAKleeE 1001
|
410
....*....|....*..
gi 568940319 730 VDRLLEILKEVENEKND 746
Cdd:TIGR02169 1002 RKAILERIEEYEKKKRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
350-847 |
1.33e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.91 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 350 LEQKEKEnnmLREEMHRRFENAPDSAKTK-ALQTVIEMKDSKISSMErglrDLEEEIQMLKSNGALSSEEREEEMKQMEV 428
Cdd:PRK02224 211 LESELAE---LDEEIERYEEQREQARETRdEADEVLEEHEERREELE----TLEAEIEDLRETIAETEREREELAEEVRD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 429 YRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKET 508
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 509 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:PRK02224 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 589 TLEEALA-----------DKERTIERLKEQRDRDErEKQEEIDTYKKDLKDLREKVSLLQgDLSEKEASLLDIKEHASSL 657
Cdd:PRK02224 444 EAEALLEagkcpecgqpvEGSPHVETIEEDRERVE-ELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 658 ASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEAR-ASPEMSDRIQQLEREISRYKDESSKaqteVDRLLEI 736
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEeEAEEAREEVAELNSKLAELKERIES----LERIRTL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 737 LKEVEN------EKNDKDKKIAELESLTSRQVKDQNKKVANLKHK--------EQVEKKKSAQMLEEARRREDSLSDSSQ 802
Cdd:PRK02224 598 LAAIADaedeieRLREKREALAELNDERRERLAEKRERKRELEAEfdearieeAREDKERAEEYLEQVEEKLDELREERD 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 568940319 803 QLQDSLRKKDDRIEELEEaLRESVQITAEREMVLaqeESARTNAE 847
Cdd:PRK02224 678 DLQAEIGAVENELEELEE-LRERREALENRVEAL---EALYDEAE 718
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
344-871 |
1.73e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.51 E-value: 1.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 344 HHLESLLEQKEKENNMLREEMHRRFEnapdsaKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEM 423
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISELKK------QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 424 KQMEVYRSHSKFMKNKIGQVKQELS------------RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAI 491
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSEISdlnnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 492 LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKE 571
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 572 RVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK---EASLL 648
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 649 DIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAheatlearaspEMSDRIQQLEREISRYKDESSKAQT 728
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE-----------NLEKEIDEKNKEIEELKQTQKSLKK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 729 EVDRLLEILKEVENEKNDKDKKIAELESLTS------RQVKDQNKKVANLKHKEQVEKKKSAQMLE----EARRREDSLS 798
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEEKEKKISslekelEKAKKENEKLSSIIKNIKSKKNKLKQEVKqikeTIKEIRNKWP 662
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568940319 799 DSSQQLQDSLRKKDDRIEELEEALRESVQITAER--EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 871
Cdd:TIGR04523 663 EIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-944 |
2.14e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 156 TQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSpELKKERALRKDEASKIT-IWKEQYRVVQEENQHMQMTIQALQD 234
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 235 ELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIET----------------- 297
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeqletlrskvaqlel 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 298 QKQTLNARDESIKKLLEMLQSKglSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRrfenapdsAKT 377
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDR--RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE--------EAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 378 KALQTVIEMKDSKISSMERGLRDLEEEIQMLKsngalSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTEL-LA 456
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLE-----RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYeAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 457 LQTKLET-----LTNQFSDSKQHIEVLKESltaKEQRAAILqtEVDALRLRLEEKETMlnkktkqiqdmaEEKGTQAGEI 531
Cdd:TIGR02168 539 IEAALGGrlqavVVENLNAAKKAIAFLKQN---ELGRVTFL--PLDSIKGTEIQGNDR------------EILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 532 HDLKDMLDVKERKVNVLQ------KKIENLQEQLRDKEKqmSSLKERVKSLQAD-----------TTNTDTALTTLEEAL 594
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSyllggvLVVDDLDNALELAKK--LRPGYRIVTLDGDlvrpggvitggSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 595 ADKERTIERLKEQrdrdEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIA 674
Cdd:TIGR02168 680 EELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 675 LEQKKEECLKMESQLKKAHEATLEARAspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAEL 754
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEA------EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 755 EsltsrqvkdqnkkvanlkhKEQVEKKKSAQMLEEARRRedsLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREM 834
Cdd:TIGR02168 830 E-------------------RRIAATERRLEDLEEQIEE---LSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 835 VLAQEESARTNAEKQVEEllmaMEKVKQELEsmkAKLSSTQQSLAEKETHLTNLRAeRRKHLEEVLEMKQEALLAAISEK 914
Cdd:TIGR02168 888 ALALLRSELEELSEELRE----LESKRSELR---RELEELREKLAQLELRLEGLEV-RIDNLQERLSEEYSLTLEEAEAL 959
|
810 820 830
....*....|....*....|....*....|
gi 568940319 915 DANIALLElssskKKTQEEVAALKREKDRL 944
Cdd:TIGR02168 960 ENKIEDDE-----EEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-996 |
2.88e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 272 AEHERQAKELFLLRKTleEMELRIETQKQTLNARD-ESIKKLLEMLQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLL 350
Cdd:PTZ00121 1145 ARKAEDAKRVEIARKA--EDARKAEEARKAEDAKKaEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEARKAE 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEiQMLKSNGALSSEE--REEEMKQMEV 428
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-EARKADELKKAEEkkKADEAKKAEE 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 429 YRSHSKFMKNKIGQVKQELSRKDTEllALQTKLETLTNQFSDSKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEEK 506
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAE--EAKKKADAAKKKAEEAKKAAEAAKaeAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 507 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKE---RKVNVLQKKIENLQ---------EQLRDKEKQMSSLKERVK 574
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAaakKKADEAKKKAEEKKkadeakkkaEEAKKADEAKKKAEEAKK 1458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 575 SLQADTTNTDTALTTLEEALADKERTIERLKEQRDR-----DEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLD 649
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEakkkaDEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 650 IKEHASSLASSGLKKDSRLKTLE---IALEQKKEE-----CLKMESQLKKAHEATLEARASPEMSDRIQQLER----EIS 717
Cdd:PTZ00121 1539 AKKAEEKKKADELKKAEELKKAEekkKAEEAKKAEedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEakkaEEA 1618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 718 RYKDESSKAQTEVDRLLEILKEVENE---KNDKDKKIAELESLTSRQVK---DQNKKVANLKHKEQVEKKKSAQMLEEAR 791
Cdd:PTZ00121 1619 KIKAEELKKAEEEKKKVEQLKKKEAEekkKAEELKKAEEENKIKAAEEAkkaEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 792 RREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 871
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 872 SSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 951
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAF 1849
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568940319 952 TQNRMKLMADNYEDDHFRSSRSNQTNHKpspDQIIQPLLELDQNR 996
Cdd:PTZ00121 1850 EKHKFNKNNENGEDGNKEADFNKEKDLK---EDDEEEIEEADEIE 1891
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
460-1004 |
6.65e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.60 E-value: 6.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 460 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 537
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 538 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALttlEEALADKERT---IERLKEQRDRD 611
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGLDdadAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 612 EREKQEeidtykkdlkdlrekvslLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKK 691
Cdd:PRK02224 320 EDRDEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 692 AHEATLEARaspemsDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESlTSRQVKDQNKKVAN 771
Cdd:PRK02224 375 AREAVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA-TLRTARERVEEAEA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 772 LKHK-------EQVEKKKSAQMLEEARRREDSLSDSSQQLQD-------------SLRKKDDRIEELEEALRESVQITAE 831
Cdd:PRK02224 448 LLEAgkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEeveeveerleraeDLVEAEDRIERLEERREDLEELIAE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 832 REMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVlemkqEALLAAI 911
Cdd:PRK02224 528 RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL-KERIESLERI-----RTLLAAI 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 912 SEKDANIALLElssSKKKTQEEVAALKREKdrlvqqlKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLE 991
Cdd:PRK02224 602 ADAEDEIERLR---EKREALAELNDERRER-------LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDE 671
|
570
....*....|...
gi 568940319 992 LDQNRSKLKLYIG 1004
Cdd:PRK02224 672 LREERDDLQAEIG 684
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
706-955 |
9.99e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 9.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 706 SDRIQQLEREISRYKDESSKAqtevdrllEILKEVENEKNDKDKKIA--ELESLTSRQVKDQNKKVANLKHKEQVEKKKS 783
Cdd:COG1196 192 EDILGELERQLEPLERQAEKA--------ERYRELKEELKELEAELLllKLRELEAELEELEAELEELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 784 A--QMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVK 861
Cdd:COG1196 264 EleAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 862 QELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREK 941
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
250
....*....|....
gi 568940319 942 DRLVQQLKQQTQNR 955
Cdd:COG1196 424 EELEEALAELEEEE 437
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
392-950 |
1.87e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 392 SSMERGLRDLEEEIQMLKsnGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 471
Cdd:pfam15921 220 SAISKILRELDTEISYLK--GRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 472 KQHIEVLKESltAKEQRA------AILQTEVDALRLRLEEKETMLNKKTKQIQ------------------DMAEEKGTQ 527
Cdd:pfam15921 298 QSQLEIIQEQ--ARNQNSmymrqlSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanseltearterdQFSQESGNL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 528 AGEIHDLKDMLDVKERKVNVLQKK--------------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleeA 593
Cdd:pfam15921 376 DDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA---A 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 594 LADKERTIERLKEQRDRDEREKQ------EEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASS---GLKK 664
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEmlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 665 DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE-MSDRIQQLEREISRYKDESSKAQTEV-DRLLEiLKEVEN 742
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEFKI 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 743 EKNDKDKKIAELESLTS----RQVKDQNKKVANLKHKEQVEKKKSaQMLEE---ARRREDSLSDSSQQLQDSLRKKDDRI 815
Cdd:pfam15921 612 LKDKKDAKIRELEARVSdlelEKVKLVNAGSERLRAVKDIKQERD-QLLNEvktSRNELNSLSEDYEVLKRNFRNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 816 EELEEALRESVQiTAEREmvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH 895
Cdd:pfam15921 691 ETTTNKLKMQLK-SAQSE--LEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568940319 896 LEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 950
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
275-853 |
4.01e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.31 E-value: 4.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 275 ERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKE 354
Cdd:PRK03918 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 355 KENNMLREEMHRRfenapdSAKTKALQTVIEMKDSKISSMERgLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSK 434
Cdd:PRK03918 307 DELREIEKRLSRL------EEEINGIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 435 FMKNK-IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETMLNKK 513
Cdd:PRK03918 380 RLTGLtPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI--EELKKAKGKCPVCGRELTEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 514 TKQIQDMAEEKGTqageihdlkdmLDVKERKVNVLQKKIENlqeqLRDKEKQMSSLKErvkslqadttntdtalttleea 593
Cdd:PRK03918 458 TAELKRIEKELKE-----------IEEKERKLRKELRELEK----VLKKESELIKLKE---------------------- 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 594 ladkerTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEhasslassgLKKdsRLKTLEI 673
Cdd:PRK03918 501 ------LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE---------LKK--KLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 674 ALEQKKEECLKMESQLKKAHEATLEaraspEMSDRIQQLE-------------REISRYKDESSKAQTEVDRLLEILKEV 740
Cdd:PRK03918 564 KLDELEEELAELLKELEELGFESVE-----ELEERLKELEpfyneylelkdaeKELEREEKELKKLEEELDKAFEELAET 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 741 ENEKNDKDKKIAELESLTSrqvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEE 820
Cdd:PRK03918 639 EKRLEELRKELEELEKKYS---EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
570 580 590
....*....|....*....|....*....|...
gi 568940319 821 ALRESVQITAEREMVLAQEESARTNAEKQVEEL 853
Cdd:PRK03918 716 LEKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
459-957 |
4.23e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 64.09 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 459 TKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE-EKGTQAGEIHDLKDM 537
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 538 LDV-KERKVNVLQKKIENL---QEQLRDKEKQMSSLKERVKSLQADTTN-----TDTALTTLEEALADKERTIERLKEQR 608
Cdd:pfam12128 324 LEAlEDQHGAFLDADIETAaadQEQLPSWQSELENLEERLKALTGKHQDvtakyNRRRSKIKEQNNRDIAGIKDKLAKIR 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 609 DRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEaslldiKEHASSLASSGLKKDSRLKTLEIAL--EQKKEECLKME 686
Cdd:pfam12128 404 EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEE------YRLKSRLGELKLRLNQATATPELLLqlENFDERIERAR 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 687 SQLKKAHEATLEAR--------ASPEMSDRIQQLEREISRYKDESSKAQTEVD----RLLEILKEVENEKNDKDKKIAEL 754
Cdd:pfam12128 478 EEQEAANAEVERLQselrqarkRRDQASEALRQASRRLEERQSALDELELQLFpqagTLLHFLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 755 E---------SLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDslsdssqQLQDSLRKKDDRIEELEEALres 825
Cdd:pfam12128 558 EllhrtdldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLD-------KAEEALQSAREKQAAAEEQL--- 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 826 VQITAEREMVLAQEESART---NAEKQVEELLMAME----KVKQELESMKAKLSSTQQSLAEKETHLTN----LRAERRK 894
Cdd:pfam12128 628 VQANGELEKASREETFARTalkNARLDLRRLFDEKQsekdKKNKALAERKDSANERLNSLEAQLKQLDKkhqaWLEEQKE 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568940319 895 HLEEVLEMKQEALLAAISEKDANIALLElssskkktqEEVAALKREKDRLVQQLKQQTQNRMK 957
Cdd:pfam12128 708 QKREARTEKQAYWQVVEGALDAQLALLK---------AAIAARRSGAKAELKALETWYKRDLA 761
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
438-957 |
4.83e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 4.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 438 NKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETM---LNKKT 514
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 515 KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL 594
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 595 ADKERTIERLKEQRDRDErEKQEEIDTYKKDLKDLREKVSLLQgDLSEKEASLLDIKEHASSLASSGLKKdsRLKTLEIA 674
Cdd:PRK03918 324 NGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEK--ELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 675 LEQKKEECLKMES----------QLKKAHEATLEARASPEMSDRIQQLERE---ISRYKDESSKAQTEVDRLLEILKEVE 741
Cdd:PRK03918 400 KEEIEEEISKITArigelkkeikELKKAIEELKKAKGKCPVCGRELTEEHRkelLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 742 NEKNDKDKKIAELESLTS-RQVKDQNKKVANLKHKEQVEK-KKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELE 819
Cdd:PRK03918 480 KELRELEKVLKKESELIKlKELAEQLKELEEKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 820 EALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEK----------VKQELESMKAKLSSTQQSL--AEKETHLTN 887
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneylelkdAEKELEREEKELKKLEEELdkAFEELAETE 639
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568940319 888 LRAER-RKHLEEVLEMKQEALLAAISEKdaniaLLELSSSKKKTQEEVAALKREKD---RLVQQLKQQTQNRMK 957
Cdd:PRK03918 640 KRLEElRKELEELEKKYSEEEYEELREE-----YLELSRELAGLRAELEELEKRREeikKTLEKLKEELEEREK 708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-950 |
6.92e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 6.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALrkdEASKITIWKEQYRVvQEENQHMQMTIQALQ 233
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL---ERQKEAIERQLASL-EEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 234 DEL-RIQRDLNQLFQQDSSSRTGEPC-----VAELTEE--NFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNAR 305
Cdd:TIGR02169 265 KRLeEIEQLLEELNKKIKDLGEEEQLrvkekIGELEAEiaSLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 306 DESIKKLLEMLQSKGLSAKATEEDHERtrRLAEAEMHVHHLESLLEQKEKENNMLREEM--HRRFENAPDSAKTKALQTV 383
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFAETRDELKDYREKLEKLKREIneLKRELDRLQEELQRLSEEL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 384 IEMKdSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLET 463
Cdd:TIGR02169 423 ADLN-AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 464 LTNQFSDSKQHIEVLKESLTA-----------KEQRAAILQ-------------TEVDALRLRLEEKETMLNKKT----K 515
Cdd:TIGR02169 502 SEERVRGGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEvaagnrlnnvvveDDAVAKEAIELLKRRKAGRATflplN 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 516 QIQDMAEEKG--TQAGEIHDLKDMLDVKERKVNVL---------------------QKKIENLQEQLRDKEKQMSSLKER 572
Cdd:TIGR02169 582 KMRDERRDLSilSEDGVIGFAVDLVEFDPKYEPAFkyvfgdtlvvedieaarrlmgKYRMVTLEGELFEKSGAMTGGSRA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 573 VKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER---EKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLD 649
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 650 IKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLkkaheATLEARASPEmsdRIQQLEREISRYKDESSKAQTE 729
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-----NDLEARLSHS---RIPEIQAELSKLEEEVSRIEAR 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 730 VDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLR 809
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 810 KKDDRIEELEEALRESVQITAEREMvlaqeesartnAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEkETHLTNLR 889
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEK-----------KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQ 957
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568940319 890 AERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 950
Cdd:TIGR02169 958 AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
437-645 |
1.43e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 517 IQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE 592
Cdd:COG4942 113 LYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568940319 593 ALADKERTIERLKeqrdRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 645
Cdd:COG4942 193 LKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
259-958 |
3.20e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.14 E-value: 3.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 259 VAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAE 338
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 339 AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEE 418
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 419 REEEMKQMEVYRSHSKFMK--NKIGQVKQELSRKDTE---LLALQTKLETLTNQFSDSKQhievLKESLTAKEQRAAILQ 493
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDahEVATSIREISCQQHTLtqhIHTLQQQKTTLTQKLQSLCK----ELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 494 TEVDALRLRL--EEKETMLNKKTKQIQDMAEEKGTQ---AGEIHDLKDMLDVKERKVNVLQKkiENLQEQLRDKEKQMSS 568
Cdd:TIGR00618 417 SAFRDLQGQLahAKKQQELQQRYAELCAAAITCTAQcekLEKIHLQESAQSLKEREQQLQTK--EQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 569 LKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTY------KKDLKDLREKVSLLQGDLSE 642
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYhqltseRKQRASLKEQMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 643 KEASLLDIKEHASSLASsgLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLearaspemsdriQQLEREISRYKDE 722
Cdd:TIGR00618 575 LTQCDNRSKEDIPNLQN--ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDL------------QDVRLHLQQCSQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 723 SSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQnkKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQ 802
Cdd:TIGR00618 641 LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQ--KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 803 QLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKE 882
Cdd:TIGR00618 719 EFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDT 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 883 THLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSK----KKTQEEVAALKREKDRLVQQLKQQTQNRMKL 958
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATlgeiTHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
591-950 |
3.32e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 591 EEALADKERTIERLKEQRDR--DEREKQEEIDTYKKDLKDLREKVSLlqgdlSEKEASLLDIKEHASSLASsglkKDSRL 668
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERlrREREKAERYQALLKEKREYEGYELL-----KEKEALERQKEAIERQLAS----LEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 669 KTLEIALEQKKEECLKMESQLKkaheaTLEARASPEMSDRIQQLEREISrykdessKAQTEVDRLLEILKEVENEKNDKD 748
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLE-----ELNKKIKDLGEEEQLRVKEKIG-------ELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 749 KKIAELESLTSRQvkdqnkkvanlkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQI 828
Cdd:TIGR02169 322 ERLAKLEAEIDKL---------------LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 829 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEalL 908
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--L 464
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568940319 909 AAISEKdaniaLLELSSSKKKTQEEVAALKREKDRLVQQLKQ 950
Cdd:TIGR02169 465 SKYEQE-----LYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
160-904 |
4.17e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 4.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 160 EVLRENDLLRKDVEVKESKLSSSMNSIKTFwSPELKKERALRKDEASKItiwkEQYRVVQEENQHMQMTIQALQDELRIQ 239
Cdd:PTZ00121 1179 EAARKAEEVRKAEELRKAEDARKAEAARKA-EEERKAEEARKAEDAKKA----EAVKKAEEAKKDAEEAKKAEEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 240 RDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELfllrKTLEEMELRIETQKQTLNARD-ESIKKLLEMLQS 318
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA----KKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKK 1329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 319 KGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRfenAPDSAKTKALQTviemkdSKISSMERGL 398
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK---KADAAKKKAEEK------KKADEAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 399 RDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTEllalQTKLETLTNQFSDSKQHIEVL 478
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE----AKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 479 KESLTAKE-----QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEE--KGTQAGEIHDLKDMLDVKE----RKVNV 547
Cdd:PTZ00121 1477 KKAEEAKKadeakKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakKAEEAKKADEAKKAEEKKKadelKKAEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 548 LQK--KIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEidtykkd 625
Cdd:PTZ00121 1557 LKKaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE------- 1629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 626 lkDLREKVSLLQGDLSE--KEASLLDIKEHASSLASSGLKKDSRLKtleialEQKKEECLKMESQLKKAHEATLEARASP 703
Cdd:PTZ00121 1630 --EEKKKVEQLKKKEAEekKKAEELKKAEEENKIKAAEEAKKAEED------KKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 704 EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEkndkDKKIAEleslTSRQVKDQNKKVANLKHKEQVEKKKS 783
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE----DKKKAE----EAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 784 AQMLEEARRREDSLSDSSQQLQDSLRKKD--DRIEELEEALRE-SVQITAEREMVLAQEESARTNAEKQVEElLMAMEKV 860
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRRMEVDKKIKDifDNFANIIEGGKEgNLVINDSKEMEDSAIKEVADSKNMQLEE-ADAFEKH 1852
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 568940319 861 KQELESMKAKlSSTQQSLAEKETHLtnlraeRRKHLEEVLEMKQ 904
Cdd:PTZ00121 1853 KFNKNNENGE-DGNKEADFNKEKDL------KEDDEEEIEEADE 1889
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-882 |
4.42e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 60.83 E-value: 4.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 268 QRLHAEHERQAKELFLLRKTLEEMELRIETQK-QTLNARDESIKKL-LEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 346 LESLLEQKEKENNMLREEMhrrFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQ 425
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 426 MEVYRSH------SKFMKNKIGQVKQEL--SRKDTELLALQTKL--ETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE 495
Cdd:TIGR00606 621 LSSYEDKlfdvcgSQDEESDLERLKEEIekSSKQRAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDL 700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 496 VDALRL---RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER 572
Cdd:TIGR00606 701 QSKLRLapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE 780
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 573 VKSLQADTTNTDTALTTLEEaLADKERTIERLKEQRD------------RDEREKQEEIDTYKKDLKDLREKVSLLQGDL 640
Cdd:TIGR00606 781 EESAKVCLTDVTIMERFQME-LKDVERKIAQQAAKLQgsdldrtvqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 641 SEKEASLLDIKEHASSLASSGlkkdSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEmsDRIQQLEREISRYK 720
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE--KDQQEKEELISSKE 933
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 721 DESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDS 800
Cdd:TIGR00606 934 TSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ 1013
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 801 SQQLQDSL--RKKDDRIEELEEALRE------SVQITAEREMVLAQEESARTNAEKQVeELLMAMEKVKQELESMKAKLS 872
Cdd:TIGR00606 1014 ERWLQDNLtlRKRENELKEVEEELKQhlkemgQMQVLQMKQEHQKLEENIDLIKRNHV-LALGRQKGYEKEIKHFKKELR 1092
|
650
....*....|
gi 568940319 873 STQQSLAEKE 882
Cdd:TIGR00606 1093 EPQFRDAEEK 1102
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
193-960 |
7.38e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 7.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSS-------RTGEPCVAELTEE 265
Cdd:pfam02463 203 KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKeeeklaqVLKENKEEEKEKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 266 NFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEmhVHH 345
Cdd:pfam02463 283 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE--EEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 346 LESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQ 425
Cdd:pfam02463 361 LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 426 mevyrshskFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 505
Cdd:pfam02463 441 ---------LKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKV 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 506 KETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDT 585
Cdd:pfam02463 512 LLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPL 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 586 ALTTLEE--ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLK 663
Cdd:pfam02463 592 KSIAVLEidPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 664 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVE-- 741
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEee 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 742 -----NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIE 816
Cdd:pfam02463 752 eeksrLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 817 ELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLmaMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHL 896
Cdd:pfam02463 832 EEELEELALELKEEQKLEKLAEEELERLEEEITKEELL--QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKL 909
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568940319 897 EEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMA 960
Cdd:pfam02463 910 NLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELG 973
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
480-732 |
1.98e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 480 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 559
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 560 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGD 639
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 640 LSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkaheatlearaspEMSDRIQQLEREISRY 719
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------------ELEALIARLEAEAAAA 239
|
250
....*....|...
gi 568940319 720 KDESSKAQTEVDR 732
Cdd:COG4942 240 AERTPAAGFAALK 252
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
176-645 |
2.06e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 2.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 176 ESKLSSSMNSIKTFwspELKKERAL-RKDEASKITIWKEQYR----VVQEENQHMQMTI-------QALQDELRIQRDLN 243
Cdd:PRK02224 212 ESELAELDEEIERY---EEQREQAReTRDEADEVLEEHEERReeleTLEAEIEDLRETIaetererEELAEEVRDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 244 QLFQQDSSSRTGEpcvAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlQSKGLSA 323
Cdd:PRK02224 289 EELEEERDDLLAE---AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEE--RAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 324 KATEEDHErtrrLAEAEMHVHHLESLLEQKEKENNMLREemhrRFENAPDS--AKTKALQTVIEMKD---SKISSMERGL 398
Cdd:PRK02224 364 EAAELESE----LEEAREAVEDRREEIEELEEEIEELRE----RFGDAPVDlgNAEDFLEELREERDelrEREAELEATL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 399 RDLEEEI----------------QMLK-SNGALSSEEREEEMKQMEVYRSHskfMKNKIGQVKQELSRKdTELLALQTKL 461
Cdd:PRK02224 436 RTARERVeeaealleagkcpecgQPVEgSPHVETIEEDRERVEELEAELED---LEEEVEEVEERLERA-EDLVEAEDRI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 462 ETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK 541
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 542 ERKVNV-------------LQKKIENLQEQLRDKEKQMSSLKERVKSLQADT-----TNTDTALTTLEEALADKERTIER 603
Cdd:PRK02224 592 ERIRTLlaaiadaedeierLREKREALAELNDERRERLAEKRERKRELEAEFdeariEEAREDKERAEEYLEQVEEKLDE 671
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 568940319 604 LKEQRDRDE------REKQEEIDTYKKDLKDLREKVSLLQGDLSEKEA 645
Cdd:PRK02224 672 LREERDDLQaeigavENELEELEELRERREALENRVEALEALYDEAEE 719
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
273-722 |
2.94e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 353 KEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKD--SKISSMERGLRDLEEEIQMLKSN-------GALSSEEREEEM 423
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKitARIGELKKEIKELKKAIEELKKAkgkcpvcGRELTEEHRKEL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 424 kqMEVYRSHSKfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSdskqhiEVLKESLTAKEQRAAILQTEVdalrLRL 503
Cdd:PRK03918 454 --LEEYTAELK----RIEKELKEIEEKERKLRKELRELEKVLKKES------ELIKLKELAEQLKELEEKLKK----YNL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 504 EEketmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLdvkeRKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 583
Cdd:PRK03918 518 EE----LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEE 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 584 DTALTTLEE-------ALADKERTIERLKEQRDRDERE---KQEEIDTYKKDLKDLREKVSLLQGDLSEKEASllDIKEH 653
Cdd:PRK03918 590 LEERLKELEpfyneylELKDAEKELEREEKELKKLEEEldkAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREE 667
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568940319 654 ASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDE 722
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKAL 736
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
219-914 |
3.22e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.06 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 219 QEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRlhaeheRQAKELFLLRKTLEEmelrIETQ 298
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA------RKAAPLAAHIKAVTQ----IEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 299 KQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLaeaEMHVHHLESLLEQKEKENNMLREEMHRRFEnapDSAKTK 378
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL---LQTLHSQEIHIRDAHEVATSIREISCQQHT---LTQHIH 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 379 ALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEM---KQMEVYRSHSKFMKNKIGQVKQELSRKDTELL 455
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 456 ALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAailqtevdalrLRLEEKETMLNKKTKQIqdmaEEKGTQAGEIHDLK 535
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL-----------LELQEEPCPLCGSCIHP----NPARQDIDNPGPLT 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 615
Cdd:TIGR00618 528 RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 616 QeeidtyKKDLKDLREKVSLlqgdlsEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 695
Cdd:TIGR00618 608 D------MLACEQHALLRKL------QPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 696 TLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKkvanLKHK 775
Cdd:TIGR00618 676 ASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKE----LMHQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 776 EQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEremvlaqeesARTNAEKQVEELLM 855
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAE----------IGQEIPSDEDILNL 821
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 568940319 856 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVleMKQEALLAAISEK 914
Cdd:TIGR00618 822 QCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQL--TQEQAKIIQLSDK 877
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
344-878 |
4.04e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 57.75 E-value: 4.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 344 HHLESLLEQKEKENNMLREEMHR--RFENAPDSA-----------KTKALQTVIEMKD----------SKISSMERGLRD 400
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAisnddpeeiekKIENIVTKIDKKKniydeikkllNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 401 LEE----EIQMLKSNGALSSEEREEEMKQME-VYRSHSKFMKN--KIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQ 473
Cdd:TIGR01612 1209 LEEvkgiNLSYGKNLGKLFLEKIDEEKKKSEhMIKAMEAYIEDldEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 474 HievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH----------------DLKD 536
Cdd:TIGR01612 1289 H------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilklnKIKK 1362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 537 MLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALADKE--RTIERLKEQRDRDERE 614
Cdd:TIGR01612 1363 IIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNHILSE 1434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 615 kQEEIDTYKKDLKDLREKVSLLQGDL-------------------SEKEASLLDIKEHASSLASSGLKKDSRLKTLE--- 672
Cdd:TIGR01612 1435 -ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAIEknk 1513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 673 IALEQKKEECLKMesqLKKAHEATLEARASPEMSDRiQQLEREISRYKDESS-KAQTEVDRLLEILKE---VENE--KND 746
Cdd:TIGR01612 1514 ELFEQYKKDVTEL---LNKYSALAIKNKFAKTKKDS-EIIIKEIKDAHKKFIlEAEKSEQKIKEIKKEkfrIEDDaaKND 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 747 KDKKIA-----ELESLTSRQVKDQN-KKVAN--LKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 818
Cdd:TIGR01612 1590 KSNKAAidiqlSLENFENKFLKISDiKKKINdcLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNI 1669
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568940319 819 EEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 878
Cdd:TIGR01612 1670 EDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
708-936 |
4.78e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 4.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 708 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQML 787
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 788 EEARRREDSLSDSSQQlqdslrkkdDRIEELEEAlrESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM 867
Cdd:COG4942 104 EELAELLRALYRLGRQ---------PPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568940319 868 KAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 936
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLAR-LEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-752 |
5.95e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 615
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 616 QEEIDTYKKDLKDL-------REKVSLLQGDLSEKEASLLDIKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 685
Cdd:COG4942 100 EAQKEELAELLRALyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568940319 686 ESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 752
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-868 |
2.21e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.29 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalsSEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE-----LEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKEsltakeqraailQTEVDALRLRLEEKETMLNKKTKQIQD 519
Cdd:PRK01156 307 IENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR------------YDDLNNQILELEGYEMDYNSYLKSIES 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 520 MAEEKGTQAGEIHDLKD----MLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE--- 592
Cdd:PRK01156 375 LKKKIEEYSKNIERMSAfiseILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGqsv 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 593 ----ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQgdlseKEASLLDIKEHASSLASSGLKKDSR- 667
Cdd:PRK01156 455 cpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK-----KRKEYLESEEINKSINEYNKIESARa 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 668 -LKTLEIALEQKKEECLKME---SQLKKAHEATLEARASPEMSDRIQ----QLEREISRYKDESSKAQTEVDRLLEILKE 739
Cdd:PRK01156 530 dLEDIKIKINELKDKHDKYEeikNRYKSLKLEDLDSKRTSWLNALAVisliDIETNRSRSNEIKKQLNDLESRLQEIEIG 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 740 VENEKNDKDKKIAELE----SLTSRQVKDQNKKVANLKHKEQVE--KKKSAQMLEearrREDSLSDSSQQLQDSlrkkDD 813
Cdd:PRK01156 610 FPDDKSYIDKSIREIEneanNLNNKYNEIQENKILIEKLRGKIDnyKKQIAEIDS----IIPDLKEITSRINDI----ED 681
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568940319 814 RIEELEEALRESVQITAEREmvlAQEESARTNaekqVEELLMAMEKVKQELESMK 868
Cdd:PRK01156 682 NLKKSRKALDDAKANRARLE---STIEILRTR----INELSDRINDINETLESMK 729
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
446-634 |
2.42e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 53.00 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 446 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 525
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 526 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLEEALADKERTIERLK 605
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEE-------ELAELEAELAELEAELEEKK 144
|
170 180
....*....|....*....|....*....
gi 568940319 606 EQRDRDEREKQEEIDTYKKDLKDLREKVS 634
Cdd:COG1579 145 AELDEELAELEAELEELEAEREELAAKIP 173
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
504-947 |
4.05e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 54.34 E-value: 4.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 504 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 583
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 584 DTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLK 663
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 664 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK----- 738
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 739 ----------EVENEKND-------------KDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRED 795
Cdd:pfam05483 469 ylkevedlktELEKEKLKnieltahcdklllENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 796 SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 875
Cdd:pfam05483 549 ELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEN 628
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568940319 876 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 947
Cdd:pfam05483 629 KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
1044-1084 |
5.17e-07 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 46.95 E-value: 5.17e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 568940319 1044 TQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQV 1084
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
445-642 |
1.48e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 445 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 524
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 525 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 596
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568940319 597 KERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSE 642
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
437-661 |
2.25e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktKQ 516
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------ER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 517 IQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:COG3883 92 ARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568940319 589 TLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSG 661
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
591-1006 |
2.39e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 591 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKT 670
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 671 LEIALEQKKEECLKMESQLKK------AHEATLEARASPEMSDRIQQ---LEREISRYKDESSKAQTEVDRLLEILKEVE 741
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKlqeeelKLLAKEEEELKSELLKLERRkvdDEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 742 NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEA 821
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 822 LRESVQITAEREMVLAQEESARTNAEKQVEELlmamekVKQELESMKAKLSSTQQSLAEKETHLTnlrAERRKHLEEVLE 901
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDLLKETQLV---KLQEQLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 902 MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPS 981
Cdd:pfam02463 493 QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTE 572
|
410 420
....*....|....*....|....*
gi 568940319 982 PDQIIQPLLELDQNRSKLKLYIGHL 1006
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVL 597
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
542-824 |
2.48e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 542 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--ADKERTIERLKEQRDRderekqeeI 619
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER--------L 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 620 DTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLassglkkDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEA 699
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRL-------EKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 700 RASPEMSDRI-----QQLEREISRYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELESLtsRQVKDQNKKVANLK 773
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPEY--LALLDRLEEDGLPE 831
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 568940319 774 HKEQVEKKKSAQMleearrrEDSLSDSSQQLQDSLRKKDDRIEELEEALRE 824
Cdd:COG4913 832 YEERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
289-942 |
2.69e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 289 EEMELRIETQKQTLnardesiKKLLEMLQSKglsakaTEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHrrF 368
Cdd:pfam01576 60 EEMRARLAARKQEL-------EEILHELESR------LEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQ--L 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 369 ENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGAlsseEREEEMKQMEVYRSHSKFMKNKIGQ--VKQE 446
Cdd:pfam01576 125 EKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLA----EEEEKAKSLSKLKNKHEAMISDLEErlKKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 447 LSRKDTELL--ALQTKLETLTNQFSDSKQHIEVLKESLTAKEQraailqtEVDALRLRLEEKETMLNKKTKQIQDMaeek 524
Cdd:pfam01576 201 KGRQELEKAkrKLEGESTDLQEQIAELQAQIAELRAQLAKKEE-------ELQAALARLEEETAQKNNALKKIREL---- 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 525 gtqageihdlkdmldvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERL 604
Cdd:pfam01576 270 -----------------EAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTEL 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 605 KeqrdrdeREKQEEIDTYKKDLKDLREK----VSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKE 680
Cdd:pfam01576 333 K-------KALEEETRSHEAQLQEMRQKhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEH 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 681 ECLKMESQLKkaheatlearaspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL--- 757
Cdd:pfam01576 406 KRKKLEGQLQ-------------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQlqd 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 758 TSRQVKDQNKKVANLKHK-EQVEKKKSAQML-----EEARRR-EDSLSDSSQQLQDSLRKKDDR---IEELEEA------ 821
Cdd:pfam01576 473 TQELLQEETRQKLNLSTRlRQLEDERNSLQEqleeeEEAKRNvERQLSTLQAQLSDMKKKLEEDagtLEALEEGkkrlqr 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 822 -LRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVL 900
Cdd:pfam01576 553 eLEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR 632
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568940319 901 EMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKD 942
Cdd:pfam01576 633 EKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
549-937 |
2.97e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 549 QKKIENLQEQLRDKEKQMSSLKERVKSLQadtTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKD 628
Cdd:TIGR00606 254 LKEIEHNLSKIMKLDNEIKALKSRKKQME---KDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEK 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 629 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKK-EECLKMESQLKKAHEATL-----EARAS 702
Cdd:TIGR00606 331 LNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGfERGPFSERQIKNFHTLVIerqedEAKTA 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 703 PEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEV-ENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKK 781
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEIlEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 782 KSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMA----- 856
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfp 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 857 --------MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDANIALLELSSSKK 928
Cdd:TIGR00606 571 nkkqledwLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELES-KEEQLSSYEDKLFDVCGSQDEESDLERLKEEIE 649
|
....*....
gi 568940319 929 KTQEEVAAL 937
Cdd:TIGR00606 650 KSSKQRAML 658
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
419-958 |
3.05e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 419 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLA----LQTKLETLTNQFSDS----------KQHIEVLKESLTA 484
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEeknaLQEQLQAETELCAEAeemrarlaarKQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 485 K----EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR 560
Cdd:pfam01576 83 RleeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 561 DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT---IERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQ 637
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 638 GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREIs 717
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQEL- 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 718 rykdeSSKAQTEVDrllEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKH-KEQVEKKKSAQMLEEARRRED- 795
Cdd:pfam01576 322 -----RSKREQEVT---ELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnKANLEKAKQALESENAELQAEl 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 796 -SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST 874
Cdd:pfam01576 394 rTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 875 QQSLAEKETHLTNLRA------ERRKHLEEVLEMKQEALLAAisEKDANIALLELSSSKKKTQEEVAA----------LK 938
Cdd:pfam01576 474 QELLQEETRQKLNLSTrlrqleDERNSLQEQLEEEEEAKRNV--ERQLSTLQAQLSDMKKKLEEDAGTlealeegkkrLQ 551
|
570 580
....*....|....*....|
gi 568940319 939 REKDRLVQQLKQQTQNRMKL 958
Cdd:pfam01576 552 RELEALTQQLEEKAAAYDKL 571
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
707-936 |
3.61e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 707 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQM 786
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 787 LEEARRREDSLSD-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVK 861
Cdd:COG3883 92 ARALYRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568940319 862 QELESMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 936
Cdd:COG3883 164 AELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
502-898 |
5.16e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 5.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 502 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKE--RKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAD 579
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEEL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 580 TTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEH------ 653
Cdd:COG4717 169 EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkea 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 654 ----------ASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDES 723
Cdd:COG4717 249 rlllliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 724 SKAQTEVDRLLEILKEVENEKNDKDKKIAELESltSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ 803
Cdd:COG4717 329 GLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 804 LQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKaklssTQQSLAEKET 883
Cdd:COG4717 407 LEEQLEELLGELEELLEALDE-----EELEEELEELEEELEELEEELEELREELAELEAELEQLE-----EDGELAELLQ 476
|
410
....*....|....*
gi 568940319 884 HLTNLRAERRKHLEE 898
Cdd:COG4717 477 ELEELKAELRELAEE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-911 |
5.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 5.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 473 QHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqagEIHDLKDMLDVKERKVNVLQKKI 552
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 553 ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREK 632
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 633 VSLLQ--GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQ 710
Cdd:COG4717 236 LEAAAleERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 711 QLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESltSRQVKDQNKKVANLKHKEQVEKKKS-AQMLEE 789
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEIAALLAEAGVEDEEElRAALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 790 ARRRedslsdssQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnaEKQVEELLMAMEKVKQELESMKA 869
Cdd:COG4717 394 AEEY--------QELKEELEELEEQLEELLGELEELLEALDEEEL------------EEELEELEEELEELEEELEELRE 453
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 568940319 870 KLSSTQQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 911
Cdd:COG4717 454 ELAELEAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
697-904 |
5.59e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 697 LEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEIlKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKE 776
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 777 ----QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKD-DRIEELEEALRESVQITAEREMVLAQ-EESART---NAE 847
Cdd:COG4913 297 leelRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARlEALLAAlglPLP 376
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568940319 848 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 904
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
387-748 |
7.26e-06 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 50.43 E-value: 7.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 387 KDSKISSMERGLRDLEEEIQMLKS--NGAL-----SSEEREEEMKQMEvYRSHSKFMKNKIGQVKQELSRKDTELLALQT 459
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELvitnaKKKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 460 KLETLTNQ-------------FSDSKQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKETMLNKKTKQI 517
Cdd:PTZ00108 1076 EDDEEELGaavsydyllsmpiWSLTKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 518 QDMAEEKGTQAGEIHDLKDmLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADK 597
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKL-KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTK 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 598 ERTIERLKEQRDRDEREKQEEI------DTYKKDLKDLREKVSLLQGDLSEKEAS--LLDIKEHASSLASSGLKKD-SRL 668
Cdd:PTZ00108 1235 PKKSSVKRLKSKKNNSSKSSEDndefssDDLSKEGKPKNAPKRVSAVQYSPPPPSkrPDGESNGGSKPSSPTKKKVkKRL 1314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 669 KTLEIALEQKKEECLKmESQLKKAHEATLEARASPEmsdriQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD 748
Cdd:PTZ00108 1315 EGSLAALKKKKKSEKK-TARKKKSKTRVKQASASQS-----SRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
456-633 |
7.46e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 7.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 456 ALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQ--TEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIHD 533
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSD----DLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 534 LKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER 613
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180
....*....|....*....|
gi 568940319 614 EKQEEIDTYKKDLKDLREKV 633
Cdd:COG4913 770 NLEERIDALRARLNRAEEEL 789
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
593-830 |
8.43e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 8.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 593 ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE 672
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 673 IALEQKKEEclkMESQLKKAHEAtleARASPEM----SDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKD 748
Cdd:COG4942 97 AELEAQKEE---LAELLRALYRL---GRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 749 KKIAELESLTSRQVKDQNKKvanlkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQI 828
Cdd:COG4942 171 AERAELEALLAELEEERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
..
gi 568940319 829 TA 830
Cdd:COG4942 243 TP 244
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
501-944 |
9.22e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.90 E-value: 9.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 501 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 580
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 581 TNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEID-------------TYKKDLKDLREKVSLLQGDLSEKEASL 647
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDpvyknrnyindyfKYKNDIENKKQILSNIDAEINKYHAII 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 648 LDIKEhASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheatlearaspemsdrIQQLEREISRYKDESSKAQ 727
Cdd:PRK01156 329 KKLSV-LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS-----------------IESLKKKIEEYSKNIERMS 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 728 TEVDRLLEIlkevenEKNDKDKKIAELESLtSRQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLS--------- 798
Cdd:PRK01156 391 AFISEILKI------QEIDPDAIKKELNEI-NVKLQDISSKVSSL----NQRIRALRENLDELSRNMEMLNgqsvcpvcg 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 799 -----DSSQQLQDSLRKKDDRIEE-LEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 872
Cdd:PRK01156 460 ttlgeEKSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN 539
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568940319 873 stqqSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEkdanIALLELSSSKKKTQEEVAALKREKDRL 944
Cdd:PRK01156 540 ----ELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAV----ISLIDIETNRSRSNEIKKQLNDLESRL 603
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
549-850 |
9.60e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 9.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 549 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK-EQRDRD-EREKQEEIDTYKKDL 626
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 627 KDLrEKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMS 706
Cdd:pfam17380 378 REL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 707 DRIQQLEReISRYKDESSKAQTEVDRLLEILKEVENEKndkdKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSaqM 786
Cdd:pfam17380 457 ERQQQVER-LRQQEEERKRKKLELEKEKRDRKRAEEQR----RKILEKELEERKQAMIEEERKRKLLEKEMEERQKA--I 529
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568940319 787 LEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQV 850
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
228-890 |
1.19e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.69 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 228 TIQALQDELRIQRDLNQLFQQDSSsrtgepCVAELTEENFQRLHAEHERQakelfllrKTLEEMELRIETQKQTLNARDE 307
Cdd:COG5022 818 CIIKLQKTIKREKKLRETEEVEFS------LKAEVLIQKFGRSLKAKKRF--------SLLKKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 308 SIKKLLEMLQSKGLSAKATEEDhertrrlaeaemhvhhlESLLEQKEKENNMLREEMHRRfenapdSAKTKALQTVIEMK 387
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELE-----------------SEIIELKKSLSSDLIENLEFK------TELIARLKKLLNNI 940
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 388 DSKI-SSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETL-- 464
Cdd:COG5022 941 DLEEgPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLke 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 465 TNQFSDSKQHIEVLKESLTAKEQRaailQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqageihDLKDMLDVKERK 544
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELSI----LKPLQKLKGLLLLENNQLQARYKALKLRRENS--------LLDDKQLYQLES 1088
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 545 VNVLQKKIENLQEQLRDKEkqmSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE-------REKQE 617
Cdd:COG5022 1089 TENLLKTINVKDLEVTNRN---LVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQleldglfWEANL 1165
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 618 EIDTYKKDLKDLREK----VSLLQGDLSEKEASLLDIKEHASSLAS---SGLKKDSRLKTL--EIALEQKKEECLKMESQ 688
Cdd:COG5022 1166 EALPSPPPFAALSEKrlyqSALYDEKSKLSSSEVNDLKNELIALFSkifSGWPRGDKLKKLisEGWVPTEYSTSLKGFNN 1245
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 689 LKKAhEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEvenekNDKDKKIAELESLTSRQVKDQNKK 768
Cdd:COG5022 1246 LNKK-FDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINV-----GLFNALRTKASSLRWKSATEVNYN 1319
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 769 VANL----KHKEQVEKKKSAQMLEEARR----REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEE 840
Cdd:COG5022 1320 SEELddwcREFEISDVDEELEELIQAVKvlqlLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIE 1399
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 568940319 841 SARTNAEKQVE-ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 890
Cdd:COG5022 1400 ALLIKQELQLSlEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSA 1450
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
565-807 |
1.45e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.86 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 565 QMSSL-KERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEK 643
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 644 EASLLDIKEHASSLASSGLKKDSRLKTL--EIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREISRYK 720
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPTCTQQISEGPDRITKIKDKlKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 721 DESSKAQTEVDRLLEILKEVENEK------NDKDKKI-AELESLTSrQVKDQNKKVANLKHKEQVEKKKSAQMLEEarrr 793
Cdd:PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKqslitlVDKAKKVkAAIEELQA-EFVDNAEELAKLQDELDKIVKTKSELVKE---- 401
|
250
....*....|....
gi 568940319 794 EDSLSDSSQQLQDS 807
Cdd:PHA02562 402 KYHRGIVTDLLKDS 415
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
729-961 |
1.54e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 729 EVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKV---ANLKHKEQVE-------KKKSAQMLEEARRREDSLS 798
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryqALLKEKREYEgyellkeKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 799 DSSQQLQDSLRKKDDRIEELEEALRE---SVQITAEREMVLAQE-----ESARTNAEKQVEELLMAMEKVKQELESMKAK 870
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkKIKDLGEEEQLRVKEkigelEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 871 LSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQE--ALLAAISEKDANIALL--ELSSSKKK---TQEEVAALKREKDR 943
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETrdELKDYREKlekLKREINELKRELDR 410
|
250
....*....|....*...
gi 568940319 944 LVQQLKQQTQNRMKLMAD 961
Cdd:TIGR02169 411 LQEELQRLSEELADLNAA 428
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
414-921 |
1.64e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 414 LSSEEREEEMKQMEVYRSHSKfmkNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHievLKESLTAKEQRAAILQ 493
Cdd:pfam05483 247 IQITEKENKMKDLTFLLEESR---DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMS---LQRSMSTQKALEEDLQ 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 494 TEVDALRLRLEEKETmlnkktkQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR----DKEKQMSSL 569
Cdd:pfam05483 321 IATKTICQLTEEKEA-------QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiitmELQKKSSEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 570 KE--RVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQgdlSEKEASL 647
Cdd:pfam05483 394 EEmtKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIK---TSEEHYL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 648 LDIKEHASSLASSGLKKDSRLKTLEIALEQKKE---ECLKMESQLKKAHEATLEARASPE-MSDRIQQLEREISRYKDES 723
Cdd:pfam05483 471 KEVEDLKTELEKEKLKNIELTAHCDKLLLENKEltqEASDMTLELKKHQEDIINCKKQEErMLKQIENLEEKEMNLRDEL 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 724 SKAQTE-----------VDRLLEILKEVENEKNDKDKKIAELESLTS---RQVKDQNKKVANLKHKEQVEKKKSAQM--- 786
Cdd:pfam05483 551 ESVREEfiqkgdevkckLDKSEENARSIEYEVLKKEKQMKILENKCNnlkKQIENKNKNIEELHQENKALKKKGSAEnkq 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 787 --------------LEEARRREDSLSDSSQ-QLQDSLRKKDDRIEELEEAlresvQITAEREMVLAQEESARtnAEKQVE 851
Cdd:pfam05483 631 lnayeikvnkleleLASAKQKFEEIIDNYQkEIEDKKISEEKLLEEVEKA-----KAIADEAVKLQKEIDKR--CQHKIA 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 852 ELLMAMEKVKQ-----------ELESMKAKLSSTQQSLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDANIAL 920
Cdd:pfam05483 704 EMVALMEKHKHqydkiieerdsELGLYKNKEQEQSSAKAALEIELSNIKAELLS-LKKQLEIEKEEKEKLKMEAKENTAI 782
|
.
gi 568940319 921 L 921
Cdd:pfam05483 783 L 783
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
434-686 |
1.98e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 434 KFMKNKIGQVKQELSRKDTELLALQTKLETLTNqfsdskqHIEVLKESltaKEQRAAILQTEVDALRLRLEEKETMLNKK 513
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK-------NIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEEL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 514 TKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQE---------QLRDKEKQMSSLKERVKSLQADttntd 584
Cdd:PHA02562 240 TDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQHS----- 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 585 talttleealadkertIERLKEQRDrDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKK 664
Cdd:PHA02562 315 ----------------LEKLDTAID-ELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377
|
250 260
....*....|....*....|....
gi 568940319 665 DSRLKTLEIALEQKKEEC--LKME 686
Cdd:PHA02562 378 AEELAKLQDELDKIVKTKseLVKE 401
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
744-940 |
2.08e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 744 KNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKsaqmlEEARRRedslsdssQQLQDSLRKKDDRIEELEEALR 823
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE-----EIHKLR--------NEFEKELRERRNELQKLEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 824 EsvqitaeREMVLaqeesartnaEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 903
Cdd:PRK12704 93 Q-------KEENL----------DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 568940319 904 QEallaaisekDANIALLElsSSKKKTQEEVAALKRE 940
Cdd:PRK12704 152 AE---------EAKEILLE--KVEEEARHEAAVLIKE 177
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
445-577 |
2.71e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 47.65 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 445 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 524
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568940319 525 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 577
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
551-820 |
3.47e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 48.12 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 551 KIENLQEQLRDKEKQMSSLKER-VKSLQADTTNTDTALTTLEEALADKER-TIERLKEQRDRDEREKQEEIDTYKKdlKD 628
Cdd:PTZ00108 1103 KVEKLNAELEKKEKELEKLKNTtPKDMWLEDLDKFEEALEEQEEVEEKEIaKEQRLKSKTKGKASKLRKPKLKKKE--KK 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 629 LREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKK---DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEM 705
Cdd:PTZ00108 1181 KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKksnSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEF 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 706 SDRIQQLEREISRY-------KDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQV 778
Cdd:PTZ00108 1261 SSDDLSKEGKPKNApkrvsavQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTR 1340
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568940319 779 EKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEE 820
Cdd:PTZ00108 1341 VKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDE 1382
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
704-958 |
3.49e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 704 EMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSR--QVKDQNKKVANLKHKEQVEKK 781
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEvkELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 782 KSAQMLEEARRREDSLSDSSQQLQDsLRKKDDRIEELEEALRESVQITAEREMVLaQEESARTNAEKQVEELLMAMEKVK 861
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE-LEEKVKELKELKEKAEEYIKLSEFYEEYL-DELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 862 QELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLEEVLEMKQE-----ALLAAISEKDANIALLELSSSKKKTQEEVAA 936
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEElerlkKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260
....*....|....*....|..
gi 568940319 937 LKREKDRLVQQLKQQTQNRMKL 958
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEEL 431
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
654-872 |
3.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 654 ASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRL 733
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 734 LEILKEVENEKNDKDKKIAELesLTSRQVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDSLSDSS 801
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEL--LRALYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568940319 802 QQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 872
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
591-764 |
4.76e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 591 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEkeaslldikehasslassglkKDSRLKT 670
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE---------------------KDERIER 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 671 LEIALEQKKEEclkMESQLKKAHEATLEARaspemsdRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEnekndKDKK 750
Cdd:COG2433 446 LERELSEARSE---ERREIRKDREISRLDR-------EIERLERELEEERERIEELKRKLERLKELWKLEH-----SGEL 510
|
170
....*....|....*.
gi 568940319 751 IA--ELESLTSRQVKD 764
Cdd:COG2433 511 VPvkVVEKFTKEAIRR 526
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
192-810 |
5.15e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 5.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 192 PELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQdsssrtgepcvaelteENFQRLH 271
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ----------------EIHIRDA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsaKATEEDHERTRRLAEAEMHVHHLESLLE 351
Cdd:TIGR00618 361 HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE----QATIDTRTSAFRDLQGQLAHAKKQQELQ 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 352 QKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRdlEEEIQMLKSNGALSSEEREEEMKQMEVYRS 431
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHPN 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 432 HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 511
Cdd:TIGR00618 515 PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 512 KKTKQIQDMAEEKGTQAGEIHDLKDMldvkerkvnvLQKKIENLQEQLRDKEKQMSslkERVKSLQADTTNTDTALTTLE 591
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRK----------LQPEQDLQDVRLHLQQCSQE---LALKLTALHALQLTLTQERVR 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 592 EALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTL 671
Cdd:TIGR00618 662 EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDAL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 672 EIALEQKKEECLKMESQLKKAHE-ATLEARASPEMSDRIQQLEREISRYKDESSKAQTEvdrlLEILKEVENEKNDKDKK 750
Cdd:TIGR00618 742 NQSLKELMHQARTVLKARTEAHFnNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHL----LKTLEAEIGQEIPSDED 817
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 751 IAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRK 810
Cdd:TIGR00618 818 ILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
440-891 |
5.56e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 511
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 512 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQEQLRDKEKQMSSLKERVKS----LQADTTNTDTAL 587
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRRELRELEAEIASLERRKSNiparLLALRDALAEAL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 588 TTLEEAL---------ADKERT----IERL-----------KEQRDR-----DEREKQEEIDTYK-KDLKDLREKVSLLQ 637
Cdd:COG4913 454 GLDEAELpfvgelievRPEEERwrgaIERVlggfaltllvpPEHYAAalrwvNRLHLRGRLVYERvRTGLPDPERPRLDP 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 638 GDLSEKeaslLDIKEHA------SSLASSG----------LKKDSR-------LKTLEIALEQKKEECLKMESQLKKAHE 694
Cdd:COG4913 534 DSLAGK----LDFKPHPfrawleAELGRRFdyvcvdspeeLRRHPRaitragqVKGNGTRHEKDDRRRIRSRYVLGFDNR 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 695 ATLEARAspemsDRIQQLEREISRYKDESSKAQTEVDRL------LEILKEVENEKNDKDKKIAELESLTS--RQVKDQN 766
Cdd:COG4913 610 AKLAALE-----AELAELEEELAEAEERLEALEAELDALqerreaLQRLAEYSWDEIDVASAEREIAELEAelERLDASS 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 767 KKVANLKhkeqvekkksaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsaRTNA 846
Cdd:COG4913 685 DDLAALE-----------EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL--RALL 751
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 568940319 847 EKQVEELLMAmEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAE 891
Cdd:COG4913 752 EERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
432-624 |
7.87e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 432 HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLeeketmLN 511
Cdd:COG4913 261 AERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------RG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 512 KKTKQIQDMAEekgtqagEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAdttntdtALTTLE 591
Cdd:COG4913 335 NGGDRLEQLER-------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE-------ALEEEL 400
|
170 180 190
....*....|....*....|....*....|...
gi 568940319 592 EALADKERTIERLKEQRDRDEREKQEEIDTYKK 624
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
415-955 |
8.86e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 8.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 415 SSEEREE---EMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAI 491
Cdd:TIGR00618 161 KSKEKKEllmNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQ 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 492 LQTEVDALRLRLEEKETmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDvKERKVNVLQKKIENLQEQLRDKEKQMSSLKE 571
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLK-KQQLLKQLRARIEELRAQEAVLEETQERIN-RARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 572 RVKSLqADTTNTDTALTTLEEALADKERTIERLKEQRD--RDEREKQEEIDTYKKDLKDLREKVSLLQGD---LSEKEAS 646
Cdd:TIGR00618 319 KMRSR-AKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIhiRDAHEVATSIREISCQQHTLTQHIHTLQQQkttLTQKLQS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 647 LLDIKEHASSLASSGLKKDSRLKTLEIALE--------QKKEECLKMESQLKKAHEATLEARASPEMS----DRIQQLER 714
Cdd:TIGR00618 398 LCKELDILQREQATIDTRTSAFRDLQGQLAhakkqqelQQRYAELCAAAITCTAQCEKLEKIHLQESAqslkEREQQLQT 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 715 EISRYKDESSKAQTEVDRLLEI------LKEVENEKNDKDKKIAELESLTSR------QVKDQNKKVANLKHKEQVEKKK 782
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELqeepcpLCGSCIHPNPARQDIDNPGPLTRRmqrgeqTYAQLETSEEDVYHQLTSERKQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 783 SAQMLEEARRREDSLSDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLA---QEESARTNAEKQVEELLMAMEK 859
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQCDN-RSKEDIPNLQNITVRLQDLTEKLSEAEDMLAceqHALLRKLQPEQDLQDVRLHLQQ 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 860 VKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKhlEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKR 939
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLTQERVREHALSIRVLP--KELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
|
570
....*....|....*.
gi 568940319 940 EKDRLVQQLKQQTQNR 955
Cdd:TIGR00618 715 EYDREFNEIENASSSL 730
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
436-764 |
9.85e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.05 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 436 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 515
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 516 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 595
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 596 DKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIAL 675
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 676 EQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 755
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*....
gi 568940319 756 SLTSRQVKD 764
Cdd:COG4372 361 KGAEAGVAD 369
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
685-922 |
1.94e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 685 MESQLKKAHEATLEARAS-----PEMSDRIQQLEREISRYKDESS--KAQTEVDRLLEILKEVENEKNDKDKKIAELESL 757
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 758 ---TSRQVKDQNKKVANLKHKEQVEKKKSAqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEalresvQITAEREM 834
Cdd:COG3206 242 laaLRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALRA------QLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 835 VLAQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALLAAi 911
Cdd:COG3206 314 ILASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARLAE- 381
|
250
....*....|.
gi 568940319 912 SEKDANIALLE 922
Cdd:COG3206 382 ALTVGNVRVID 392
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
728-914 |
2.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 728 TEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARrredslsdssQQLQDS 807
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL----------EALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 808 LRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEkvkQELESMKAKLSSTQQSLAEKETHLTN 887
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEELEELQQRLAELEEELEE 217
|
170 180
....*....|....*....|....*..
gi 568940319 888 LRAERRKHLEEVLEMKQEALLAAISEK 914
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEER 244
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
536-755 |
2.17e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 536 DMLDVKE-RKVNVLQK-KIENLQEQLRDKEKQMSSLKERVK-------SLQADTTNTDTALTTLEEALADKERTIERLKE 606
Cdd:PHA02562 158 DLLDISVlSEMDKLNKdKIRELNQQIQTLDMKIDHIQQQIKtynknieEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 607 QRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLS--EKEASLL-----------DIKEHASSLAssglKKDSRLKTLEI 673
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEqfQKVIKMYekggvcptctqQISEGPDRIT----KIKDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 674 ALEQKKEECLKMESQLKKAHEATLEARaspEMSDRIQQLEREISRYKDESSKAQTEVDRLL-------EILKEVENEKND 746
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLL---ELKNKISTNKQSLITLVDKAKKVKAAIEELQaefvdnaEELAKLQDELDK 390
|
....*....
gi 568940319 747 KDKKIAELE 755
Cdd:PHA02562 391 IVKTKSELV 399
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
440-780 |
2.23e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD 519
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 520 MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKEr 599
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 600 TIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKK 679
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 680 EECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTS 759
Cdd:COG4372 265 LAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344
|
330 340
....*....|....*....|.
gi 568940319 760 RQVKDQNKKVANLKHKEQVEK 780
Cdd:COG4372 345 LLLVGLLDNDVLELLSKGAEA 365
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
550-950 |
2.47e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAlttlEEALADKERTIERLkeQRDRDEREKQEEIDTYKKDLKDL 629
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL----EEELEELEAELEEL--REELEKLEKLLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 630 REKVSLLQGDLSEKEASLLDIKEhasslassglkKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRI 709
Cdd:COG4717 138 EAELAELPERLEELEERLEELRE-----------LEEELEELEAELAELQEELEELLEQLSLATEEELQ-----DLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 710 QQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKK---------------IAELESLTSRQ------------- 761
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaaLLALLGLGGSLlsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 762 ---------VKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE--DSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 830
Cdd:COG4717 282 vlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 831 EREMVLAQEESARTNAEKQVEELLMAMEKVKQelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAA 910
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQ------------AEEYQELKEELEELEEQLEELLGEL-----EELLEA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 568940319 911 ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 950
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
690-879 |
2.90e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 690 KKAHEATLEARaspemsDRIQQLEREISRYKDEsskAQTEV-DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK 768
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKE---ALLEAkEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 769 VANLKHKEQ-VEKKKsaqmlEEARRREDSLSDSSQQLQdslRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESART 844
Cdd:PRK12704 102 LELLEKREEeLEKKE-----KELEQKQQELEKKEEELE---ELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARH 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 568940319 845 NAEKQVEEllmAMEKVKQELEsMKAK--LSSTQQSLA 879
Cdd:PRK12704 170 EAAVLIKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
707-957 |
3.46e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 44.68 E-value: 3.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 707 DRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENekndkdkkiaelesltsrqvkdqnkkvANLKHKEQVEkkksaqm 786
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEA---------------------------AALQPGEEEE------- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 787 LEEARRRedsLSdSSQQLQDSLRKKDDRIEELEEALRESVQiTAEREMV-LAQEESARTNAEKQVEELLMAMEKVKQELE 865
Cdd:COG0497 211 LEEERRR---LS-NAEKLREALQEALEALSGGEGGALDLLG-QALRALErLAEYDPSLAELAERLESALIELEEAASELR 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 866 SMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKRE 940
Cdd:COG0497 286 RYLDSLEFDPERLEEVEERLALLRRLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAE 356
|
250
....*....|....*..
gi 568940319 941 KDRLVQQLkqqTQNRMK 957
Cdd:COG0497 357 LLEAAEKL---SAARKK 370
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-562 |
4.61e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTL-NARDESIKKLLEMLQSKGLSAKATEE-----DHERTRRLA 337
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALkNARLDLRRLFDEKQSEKDKKNKALAErkdsaNERLNSLEA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 338 EAEMHVHHLESLLEQKE---KENNMLREEMHRRFENAPDS-----------------AKTKALQTviEMKDS-------- 389
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKeqkREARTEKQAYWQVVEGALDAqlallkaaiaarrsgakAELKALET--WYKRDlaslgvdp 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 390 -KISSMERGLRDLEEEIQMLKSNGalsSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQtkletltnqf 468
Cdd:pfam12128 768 dVIAKLKREIRTLERKIERIAVRR---QEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLI---------- 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 469 SDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 548
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
330
....*....|....
gi 568940319 549 QKKIENLQEQLRDK 562
Cdd:pfam12128 910 KKYVEHFKNVIADH 923
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
675-914 |
4.99e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 675 LEQKKEECLKMESQLKKAHEAtLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAEL 754
Cdd:PRK05771 48 LRSLLTKLSEALDKLRSYLPK-LNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 755 ESLTSRQVKDQNKK-------VANLKHKEQVEKKKsaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvq 827
Cdd:PRK05771 127 EPWGNFDLDLSLLLgfkyvsvFVGTVPEDKLEELK----LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKK--- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 828 itaeremvlAQEESARTNAEKQVEELLmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEAL 907
Cdd:PRK05771 200 ---------LGFERLELEEEGTPSELI---REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEAL 266
|
....*...
gi 568940319 908 L-AAISEK 914
Cdd:PRK05771 267 SkFLKTDK 274
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
531-953 |
5.17e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 44.23 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 531 IHDLKDMLDVKERKVNV-LQKKIENLQ-EQLRD----KEKQMSSLKERVKS-LQADTTNTDTALTTLEEALADKERTIE- 602
Cdd:NF033838 71 LSEIQKSLDKRKHTQNVaLNKKLSDIKtEYLYElnvlKEKSEAELTSKTKKeLDAAFEQFKKDTLEPGKKVAEATKKVEe 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 603 ---RLKEQRDRDERekQEEIDTYKKDLKDLREkvsllqGDLSEKEASLLDIKEHASslassGLKKDSRLKTLEIALEQKK 679
Cdd:NF033838 151 aekKAKDQKEEDRR--NYPTNTYKTLELEIAE------SDVEVKKAELELVKEEAK-----EPRDEEKIKQAKAKVESKK 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 680 EECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDES-SKAQTEVDRLLEILKEVENEKNDKDKKIAElESLT 758
Cdd:NF033838 218 AEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPkRRAKRGVLGEPATPDKKENDAKSSDSSVGE-ETLP 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 759 SRQVKDQnKKVANLKHKEQVEKKKSAQMLEEARRREDSLSdssqqlqdslrkkddrIEELEEALRESVQITAEREMVLAQ 838
Cdd:NF033838 297 SPSLKPE-KKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNT----------------YKTLELEIAESDVKVKEAELELVK 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 839 EESARTNAEKQVeellmamEKVKQELESMKA---KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA------LLA 909
Cdd:NF033838 360 EEAKEPRNEEKI-------KQAKAKVESKKAeatRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPApapqpeKPA 432
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 568940319 910 AISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQ 953
Cdd:NF033838 433 PKPEKPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE 476
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
515-652 |
5.24e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 5.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 515 KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTleEAL 594
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY--EAL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 568940319 595 ADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE 652
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
507-728 |
5.80e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 507 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ------ADT 580
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgerARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 581 TNTDTALTTLEEALADKE------RTIERLKEQRDRDerekQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHA 654
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSEsfsdflDRLSALSKIADAD----ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568940319 655 SSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQT 728
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-574 |
6.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIgqvkQELSRKDTEL 454
Cdd:COG4942 48 KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAL----YRLGRQPPLA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 455 LALQTKletltnQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 534
Cdd:COG4942 124 LLLSPE------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAER 197
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568940319 535 KDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 574
Cdd:COG4942 198 QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
486-719 |
6.71e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 486 EQRAAILQTEVDALR------LRLEEKETMLnKKTKQIQDMAEEKGTQAGEIHDLKDMLDV--KERKVNVLQKKIENLQE 557
Cdd:COG4913 224 FEAADALVEHFDDLErahealEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLwfAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 558 QLRDKEKQMSSLKERvkslqadttntdtalttleeaLADKERTIERLKEQRDRDereKQEEIDTYKKDLKDLREKVSLLQ 637
Cdd:COG4913 303 ELARLEAELERLEAR---------------------LDALREELDELEAQIRGN---GGDRLEQLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 638 GDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREIS 717
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR--ELEAEIASLERRKS 436
|
..
gi 568940319 718 RY 719
Cdd:COG4913 437 NI 438
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
647-982 |
6.90e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 647 LLDIKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLK-----KAHEATLEARAS--PEMSDRIQQLEREISRY 719
Cdd:pfam17380 274 LLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKleeaeKARQAEMDRQAAiyAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 720 KDESSKAQTEVDRLLEILKEVEnekndkdkKIAELESLtsrQVKDQNKkvaNLKHKEQVEKKKSAQMLEEARRR------ 793
Cdd:pfam17380 354 RQEERKRELERIRQEEIAMEIS--------RMRELERL---QMERQQK---NERVRQELEAARKVKILEEERQRkiqqqk 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 794 ---EDSLSDSSQQLQDSLRK-KDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKA 869
Cdd:pfam17380 420 vemEQIRAEQEEARQREVRRlEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 870 KLSSTQQSLAEKEthltnlraERRKHLEEVLEMKQEALLAAISEKDAniallelsSSKKKTQEEVaalkREKDRLVQQLK 949
Cdd:pfam17380 500 ELEERKQAMIEEE--------RKRKLLEKEMEERQKAIYEEERRREA--------EEERRKQQEM----EERRRIQEQMR 559
|
330 340 350
....*....|....*....|....*....|...
gi 568940319 950 QQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSP 982
Cdd:pfam17380 560 KATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
392-738 |
7.44e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 7.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 392 SSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 471
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 472 KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK 551
Cdd:pfam07888 114 SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 552 IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEeidtykkdlkdLRE 631
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE-----------LSS 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 632 KVSLLQGDLSEKEASLLDIKEHASSLASSGLK-KDSRLK------TLEIALEQKKEECLKMESQLKKAHEATLEARASPe 704
Cdd:pfam07888 263 MAAQRDRTQAELHQARLQAAQLTLQLADASLAlREGRARwaqereTLQQSAEADKDRIEKLSAELQRLEERLQEERMER- 341
|
330 340 350
....*....|....*....|....*....|....
gi 568940319 705 msdriQQLEREISRYKDESSKAQTEVDRLLEILK 738
Cdd:pfam07888 342 -----EKLEVELGREKDCNRVQLSESRRELQELK 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
537-958 |
8.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 537 MLDVKErkvnvLQKKIENLQEQ---LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEaLADKERTIERLKEQRDRDER 613
Cdd:COG4913 217 MLEEPD-----TFEAADALVEHfddLERAHEALEDAREQIELLEPIRELAERYAAARER-LAELEYLRAALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 614 EK-QEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEhasSLASSGLKK----DSRLKTLEIALEQKKEECLKMESQ 688
Cdd:COG4913 291 ELlEAELEELRAELARLEAELERLEARLDALREELDELEA---QIRGNGGDRleqlEREIERLERELEERERRRARLEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 689 LKKAHEATLEARAspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSR-------- 760
Cdd:COG4913 368 LAALGLPLPASAE--EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNiparllal 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 761 ----------------------QVKDQN-------------------------KKVA------NLKHKEQVEK-KKSAQM 786
Cdd:COG4913 446 rdalaealgldeaelpfvgeliEVRPEEerwrgaiervlggfaltllvppehyAAALrwvnrlHLRGRLVYERvRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 787 LEEARRREDSL--------SDSSQQLQDSLRKKDDRI--EELEEALRESVQITAEREMvlAQEESART------------ 844
Cdd:COG4913 526 PERPRLDPDSLagkldfkpHPFRAWLEAELGRRFDYVcvDSPEELRRHPRAITRAGQV--KGNGTRHEkddrrrirsryv 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 845 ---NAEKQVEELlmamekvKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH--LEEVLEMKQ--EALLAAISEKDAN 917
Cdd:COG4913 604 lgfDNRAKLAAL-------EAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIdvASAEREIAELEAE 676
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568940319 918 IALLELSSSK-KKTQEEVAALKREKDRLVQQLKQQTQNRMKL 958
Cdd:COG4913 677 LERLDASSDDlAALEEQLEELEAELEELEEELDELKGEIGRL 718
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
8.53e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568940319 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
283-607 |
9.20e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 283 LLRKTLEEMElrieTQKQTLNARDESIKKLLEMLQSKGLSAKATeeDHERTRRLAEAEMHVHHLESLLEQKEKENNMLRE 362
Cdd:pfam15921 476 MLRKVVEELT----AKKMTLESSERTVSDLTASLQEKERAIEAT--NAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTE 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 363 EMHRRFENAPDSAKTKALQTVIEMKDSKI--------------SSMERGLRDLEEEIQMLKsngaLSSEEREEEMKQMEV 428
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRLELQEFK----ILKDKKDAKIRELEA 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 429 YRSHSKFMKNKIGQVKQELSRK----DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRaaiLQTEVDALRLRLE 504
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE---METTTNKLKMQLK 702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 505 EKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTD 584
Cdd:pfam15921 703 SAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
330 340
....*....|....*....|...
gi 568940319 585 TALTTLEEALADKERTIERLKEQ 607
Cdd:pfam15921 783 TEKNKMAGELEVLRSQERRLKEK 805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
787-1090 |
9.42e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 9.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 787 LEEARRREDSLSDSSQQLQDSLRKKDD-----------RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLM 855
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAElrelelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 856 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK-TQEEV 934
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEeLKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 935 AALKREKDRLVQQLKQQTQNRMKLmadnyeDDHFRSSRSNqtnhkpspdqIIQPLLELDQNRSKLKLYIGHLTALchdrd 1014
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEEL------EEQLETLRSK----------VAQLELQIASLNNEIERLEARLERL----- 412
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568940319 1015 plilrgltppasynadgeqaawENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDiLEQVVNALEE 1090
Cdd:TIGR02168 413 ----------------------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE-LERLEEALEE 465
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-528 |
1.18e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 277 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQskglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 357 NNMLREEMHRRFENapdsaktkalqtviemkdskissMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRSHSKFM 436
Cdd:COG4942 92 IAELRAELEAQKEE-----------------------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|..
gi 568940319 517 IQDMAEEKGTQA 528
Cdd:COG4942 229 IARLEAEAAAAA 240
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-792 |
1.82e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 398 LRDLEEEIQMLKSNGALSSE---EREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT--ELLALQTKLETLTNQFSDSK 472
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAElqeELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 473 QHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK 551
Cdd:COG4717 153 ERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 552 IENLQEQLRDKEKQ---------------------------------------------MSSLKERVKSLQADTTNTDTA 586
Cdd:COG4717 229 LEQLENELEAAALEerlkearlllliaaallallglggsllsliltiagvlflvlgllaLLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 587 LTTLEEALADKErtIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDlsEKEASLLDIKEHASSLASSGLKKD- 665
Cdd:COG4717 309 ALPALEELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL--EEELQLEELEQEIAALLAEAGVEDe 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 666 ----SRLKTLEiALEQKKEECLKMESQL---KKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILK 738
Cdd:COG4717 385 eelrAALEQAE-EYQELKEELEELEEQLeelLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568940319 739 EVENEkNDKDKKIAELESLTSRqVKDQNKKVANLK--------HKEQVEKKKSAQMLEEARR 792
Cdd:COG4717 464 QLEED-GELAELLQELEELKAE-LRELAEEWAALKlalelleeAREEYREERLPPVLERASE 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
272-744 |
1.90e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEMHVHHLES 348
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqeLEALEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 349 LLEQKEKENNMLREEMHRRFEnapdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEV 428
Cdd:COG4717 161 LEEELEELEAELAELQEELEE---------LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 429 YRShskfmKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKesltakeqRAAILQTEVDALRLRLEEKET 508
Cdd:COG4717 232 LEN-----ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG--------VLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 509 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttntdtalt 588
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-------------- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 589 tleeaLADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASslASSGLKKDSRL 668
Cdd:COG4717 365 -----LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEEL 437
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568940319 669 KTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEK 744
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
708-862 |
1.93e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 708 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL-----TSRQVKDQNKKVANLKHKEQVEKKK 782
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 783 SAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEkqvEELLMAMEKVKQ 862
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE---LEAELEELEAEREELAAKIP---PELLALYERIRK 185
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
794-964 |
1.95e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 794 EDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 873
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 874 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 951
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 568940319 952 TQNRMKLMADNYE 964
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
708-872 |
2.31e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 708 RIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSR---QVKDQNKKVAnlKHKEQVEKKKSA 784
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRlelEIEEVEARIK--KYEEQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 785 QMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQEL 864
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELDEELAELEAELEELEAER 165
|
....*...
gi 568940319 865 ESMKAKLS 872
Cdd:COG1579 166 EELAAKIP 173
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
369-976 |
2.62e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 369 ENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALS----------SEEREEEMKQMEVYRSHSKFMKN 438
Cdd:TIGR01612 690 DNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDiiveikkhihGEINKDLNKILEDFKNKEKELSN 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 439 KIgqvkQELSRKDTELLALQTKLETLTNQFSDskqhievlkesltakeqraailQTEVDalRLRLEEKETMLNKKTKQIQ 518
Cdd:TIGR01612 770 KI----NDYAKEKDELNKYKSKISEIKNHYND----------------------QINID--NIKDEDAKQNYDKSKEYIK 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 519 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSlqadttntdtalTTLEEALADKE 598
Cdd:TIGR01612 822 TISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKA------------EISDDKLNDYE 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 599 RTIERLK----EQRDRDEREKQ-----EEIDTYKKDLKDLREKVSLL---QGDLSEKeaslldIKEHASSLASSGLKKDS 666
Cdd:TIGR01612 890 KKFNDSKslinEINKSIEEEYQnintlKKVDEYIKICENTKESIEKFhnkQNILKEI------LNKNIDTIKESNLIEKS 963
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 667 RLKTLEIALEQKKEEclkMESQLKKAHEATLEARASpEMSDRIQQLEREISRYK--------DESSKAQTEVDRLLE--- 735
Cdd:TIGR01612 964 YKDKFDNTLIDKINE---LDKAFKDASLNDYEAKNN-ELIKYFNDLKANLGKNKenmlyhqfDEKEKATNDIEQKIEdan 1039
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 736 ---------ILKEVENEKNDKDKKIAE-LESLTSRQVKDQNKKVANL-KHKEQVE--------KKKSAQMLEEARRREDS 796
Cdd:TIGR01612 1040 knipnieiaIHTSIYNIIDEIEKEIGKnIELLNKEILEEAEINITNFnEIKEKLKhynfddfgKEENIKYADEINKIKDD 1119
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 797 LSDSSQQLqdslrkkDDRIEELEEALRESVQITAEREMVLAQEESARTNA---------EKQVEELLMAMEKVKQELESM 867
Cdd:TIGR01612 1120 IKNLDQKI-------DHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAisnddpeeiEKKIENIVTKIDKKKNIYDEI 1192
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 868 K------AKLSSTQQSLAE-KETHLTNLRAERRKHLEEVLEMKQEAlLAAISEKDANIAllELSSSKKKTQEEVAALKRE 940
Cdd:TIGR01612 1193 KkllneiAEIEKDKTSLEEvKGINLSYGKNLGKLFLEKIDEEKKKS-EHMIKAMEAYIE--DLDEIKEKSPEIENEMGIE 1269
|
650 660 670
....*....|....*....|....*....|....*.
gi 568940319 941 KDrlvqqlKQQTQNRMKLMADNYEDDHFRSSRSNQT 976
Cdd:TIGR01612 1270 MD------IKAEMETFNISHDDDKDHHIISKKHDEN 1299
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
510-898 |
2.90e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 510 LNKKTKQIQDMAEEKGTQAgEIHDLKDMLDVKER---KVNVLQKKIENLQEQLRDKEKQMSSLKERVKSlqadttntdta 586
Cdd:PRK11281 45 LDALNKQKLLEAEDKLVQQ-DLEQTLALLDKIDRqkeETEQLKQQLAQAPAKLRQAQAELEALKDDNDE----------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 587 ltTLEEALADKE-RTIERLKEQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKE--HASSLASSGLK 663
Cdd:PRK11281 113 --ETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNllKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 664 KDSR------LKTLEIALEQKKEEcLKMESQLkkahEATLEARASpEMSDRIQQLEREIsrykdesskaqtevdrllEIL 737
Cdd:PRK11281 191 PSQRvllqaeQALLNAQNDLQRKS-LEGNTQL----QDLLQKQRD-YLTARIQRLEHQL------------------QLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 738 KEVENEKNDK--DKKIAELESLtsrqvKDQNKKVAN-LKHKEQVEKKKSAQMLEEARRREDSLSdssqqlQDSLRKKD-- 812
Cdd:PRK11281 247 QEAINSKRLTlsEKTVQEAQSQ-----DEAARIQANpLVAQELEINLQLSQRLLKATEKLNTLT------QQNLRVKNwl 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 813 DRIEELEEALREsvQITAER-EMVLA-----QEESARTNAE-----KQVEELLMAMEKVKQELESMK------AKLSSTQ 875
Cdd:PRK11281 316 DRLTQSERNIKE--QISVLKgSLLLSrilyqQQQALPSADLieglaDRIADLRLEQFEINQQRDALFqpdayiDKLEAGH 393
|
410 420
....*....|....*....|....*
gi 568940319 876 QSLAEKETH--LTNLRAERRKHLEE 898
Cdd:PRK11281 394 KSEVTDEVRdaLLQLLDERRELLDQ 418
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
714-982 |
3.05e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 714 REISRYKDESSKAQTEVDRLLEILKEVENE-KNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARR 792
Cdd:COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYElKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 793 REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQIT--AEREMVLAQEESARTNAEKQVEELL--MAMEKVKQELESMK 868
Cdd:COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVelAERQLQELKIDVKSISSLKLVNLELesEIIELKKSLSSDLI 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 869 AKLSSTQQSLAEKETHLTNLRaerrkhLEEVLEMKQEallaaisEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQL 948
Cdd:COG5022 921 ENLEFKTELIARLKKLLNNID------LEEGPSIEYV-------KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREG 987
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568940319 949 KQQTQNRMKLMA------DNYEDDHFRSSRSNQTNHKPSP 982
Cdd:COG5022 988 NKANSELKNFKKelaelsKQYGALQESTKQLKELPVEVAE 1027
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
669-824 |
3.30e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 669 KTLEIALEQKKEECLKMESQlKKAHEATLEARASPEMSDRIQQLEREISRYkdesskaQTEVDRLLEILKEvenekndKD 748
Cdd:COG2433 376 LSIEEALEELIEKELPEEEP-EAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEE-------KD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568940319 749 KKIAELEsltsrqvkdqnkkvanlkhkEQVEKKKSAQMLEEARRREDSLSDSS-QQLQDSLRKKDDRIEELEEALRE 824
Cdd:COG2433 441 ERIERLE--------------------RELSEARSEERREIRKDREISRLDREiERLERELEEERERIEELKRKLER 497
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
391-878 |
4.34e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 391 ISSMERGLRDLEEEIQMLKSNGA----------LSSEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTK 460
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAEISnidyleeklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 461 LETLTNQFSDSKQHIEVLKESltakEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDML-- 538
Cdd:PRK01156 241 LNELSSLEDMKNRYESEIKTA----ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILsn 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 539 -DVKERKVNVLQKKIENLQ---EQLRDKEKQMSSLKERVKSLQadttntdtaltTLEEALADKERTIERLKEQRDRDERE 614
Cdd:PRK01156 317 iDAEINKYHAIIKKLSVLQkdyNDYIKKKSRYDDLNNQILELE-----------GYEMDYNSYLKSIESLKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 615 KQEEIDTYKKDLKDLREKVSLLQGDLSEKEASLLDIKEHASSLASSGLKKDSRLKTLE--IALEQKKEECLKMESQLKKA 692
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 693 HEATLEARASPEMS---DRIQQLEREISRYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELESLtsrQVKDQNKK 768
Cdd:PRK01156 466 KSNHIINHYNEKKSrleEKIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDI---KIKINELK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 769 VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEK 848
Cdd:PRK01156 543 DKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIR 622
|
490 500 510
....*....|....*....|....*....|
gi 568940319 849 QVEELLMAMEKVKQELESMKAKLSSTQQSL 878
Cdd:PRK01156 623 EIENEANNLNNKYNEIQENKILIEKLRGKI 652
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
675-961 |
4.39e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 675 LEQKKEECLKMESQLKKAHEATLEAR---------ASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVEN--- 742
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQRekekerykrDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAsse 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 743 -----------EKNDKDKKIAELE----SLTSR---------QVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLS 798
Cdd:pfam07888 112 elseekdallaQRAAHEARIRELEedikTLTQRvlereteleRMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 799 DSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQeesartnaekqveellmaMEKVKQELESMKAKLSSTQQSL 878
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE------------------NEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 879 AEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLE-----------LSSSKKKTQEEVAALKREKDRLVQQ 947
Cdd:pfam07888 254 EGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREgrarwaqeretLQQSAEADKDRIEKLSAELQRLEER 333
|
330
....*....|....
gi 568940319 948 LKQQTQNRMKLMAD 961
Cdd:pfam07888 334 LQEERMEREKLEVE 347
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
492-783 |
4.40e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 40.28 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 492 LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKE 571
Cdd:COG1340 13 LEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELRE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 572 RVKSLQADTTNtdtalttleeaLADKERTIERLKEQRDRDEREKQEEIDTYKKDlKDLREKVSLLqgdlsekeASLLDIK 651
Cdd:COG1340 93 ELDELRKELAE-----------LNKAGGSIDKLRKEIERLEWRQQTEVLSPEEE-KELVEKIKEL--------EKELEKA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 652 EHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARaspemsDRIQQLEREISRYKDESSKAQTEVD 731
Cdd:COG1340 153 KKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELY------KEADELRKEADELHKEIVEAQEKAD 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568940319 732 RLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKS 783
Cdd:COG1340 227 ELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELEEKAEEIFEKLKK 278
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
797-960 |
4.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 797 LSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQ 876
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 877 SLAEKETHLTNLRAERRKHLEEVLEMKQ----EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT 952
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
....*...
gi 568940319 953 QNRMKLMA 960
Cdd:COG4942 171 AERAELEA 178
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
538-756 |
4.93e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 538 LDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQE 617
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 618 EIDTYK--------KDLKDLREKVSLLQgDLSEKEASLLDikehasslassglkkdsRLKTLEIALEQKKEECLKMESQL 689
Cdd:COG3883 98 SGGSVSyldvllgsESFSDFLDRLSALS-KIADADADLLE-----------------ELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568940319 690 KKAHEatlearaspEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELES 756
Cdd:COG3883 160 EALKA---------ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-643 |
5.21e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 334 RRLAEAEMHVHHLESLLEQKEKEnnmlREEMHRRFEnapdsaktkALQTVIEMKDSKI--SSMERGLRDLEEEIQML-KS 410
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAE----LDALQERRE---------ALQRLAEYSWDEIdvASAEREIAELEAELERLdAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 411 NGALSS--EEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFS-DSKQHIEVLKESLTAKEQ 487
Cdd:COG4913 684 SDDLAAleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 488 RAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ----DMAEEKGTQAGEIHDLKDMLDvkerkvNVLQKKIENLQEQLR 560
Cdd:COG4913 764 ERELrenLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD------RLEEDGLPEYEERFK 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 561 DKEKQMSslKERVKSLQADTtntdtalttlEEALADKERTIERLKE-------QRDRD-----EREKQEEIDTYKKDLKD 628
Cdd:COG4913 838 ELLNENS--IEFVADLLSKL----------RRAIREIKERIDPLNDslkripfGPGRYlrleaRPRPDPEVREFRQELRA 905
|
330
....*....|....*
gi 568940319 629 LREKVSLLQGDLSEK 643
Cdd:COG4913 906 VTSGASLFDEELSEA 920
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
475-640 |
5.65e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 475 IEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmLNKKTKQIQDMAEEKGtqageihDLKDMLDVKERKVNVLQKKIEN 554
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEE--IRRLEEQVERLEAEVE-------ELEAELEEKDERIERLERELSE 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 555 LQEQLRD---KEKQMSSLKERVKSLQadttntdTALTTLEEALADKERTIERLKEQRDRDEREKQE---EIDTYKKD-LK 627
Cdd:COG2433 453 ARSEERReirKDREISRLDREIERLE-------RELEEERERIEELKRKLERLKELWKLEHSGELVpvkVVEKFTKEaIR 525
|
170
....*....|...
gi 568940319 628 DLREKVSLLQGDL 640
Cdd:COG2433 526 RLEEEYGLKEGDV 538
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
504-613 |
5.92e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 504 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 582
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|..
gi 568940319 583 TDTALTTLEEALADKERTIERL-KEQRDRDER 613
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELiEEQLQELER 146
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-868 |
6.81e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.51 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 339 AEMHVHHLESLLEQKEKENNMLREEMHrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEiqmlksngalssee 418
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEQL--------SSLTQAHEEALSSLTSKAEGLEKSLNSLETK-------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 419 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKL-ETLTNQFSDSKQHIE--VLKESLTAKEQRAAILQTE 495
Cdd:pfam07111 185 RAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVgEQVPPEVHSQTWELErqELLDTMQHLQEDRADLQAT 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 496 VDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQmssLKERVK 574
Cdd:pfam07111 265 VELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQ---LRGQVA 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 575 SLQADTTNTDTALTTLEEALADK--ERTIERLK--------EQRDRDEREKQEEIDTYKKDLKDLREKVSLLQGDLSEKE 644
Cdd:pfam07111 342 ELQEQVTSQSQEQAILQRALQDKaaEVEVERMSakglqmelSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTM 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 645 ASLLDIKEHASSLA---SSGLKKDSRLKTL---EIALEQkkeecLKMESQLKKAHEATLEARASPEMSDRIQQLEREISR 718
Cdd:pfam07111 422 TRVEQAVARIPSLSnrlSYAVRKVHTIKGLmarKVALAQ-----LRQESCPPPPPAPPVDADLSLELEQLREERNRLDAE 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 719 YKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLS 798
Cdd:pfam07111 497 LQLSAHLIQQEVGRARE---QGEAERQQLSEVAQQLE----QELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELT 569
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 799 DSSQQLQDSLRKKddrIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 868
Cdd:pfam07111 570 QQQEIYGQALQEK---VAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQ 636
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
474-742 |
7.02e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 474 HIEVLKESLTAKEQRAAI-LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAgeIHDLKDMLDVKERKVNVLQKKI 552
Cdd:PRK05771 32 HIEDLKEELSNERLRKLRsLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL--IKDVEEELEKIEKEIKELEEEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 553 ENLQEQLRDKEKQMSSLkERVKSLqadttntdtalTTLEEALADKERTIERLKE-QRDRDEREKQEEIDTYKKDLKDLRE 631
Cdd:PRK05771 110 SELENEIKELEQEIERL-EPWGNF-----------DLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDVENVEYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568940319 632 KVSLLQGDLSEKEASLLDIkehassLASSGLKKD--SRLKTLEIALEQKKEEclkmESQLKKaheatlearaspemsdRI 709
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEE------LKKLGFERLelEEEGTPSELIREIKEE----LEEIEK----------------ER 231
|
250 260 270
....*....|....*....|....*....|...
gi 568940319 710 QQLEREISRYKDESSKAQTEVDRLLEILKEVEN 742
Cdd:PRK05771 232 ESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
894-965 |
8.59e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 8.59e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568940319 894 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 965
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| |
