|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3560-3641 |
3.94e-21 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 89.96 E-value: 3.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3560 KYLRASSFRKALIYQKKYLLLLLGGFQECEDVTLGVLARMGGHLALKDSKtitnhPKAFSRFRSAVRVSIAISRMKFLVR 3639
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS-----RKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 568932676 3640 RW 3641
Cdd:pfam10495 76 EW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-964 |
3.54e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 3.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 156 DIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANE 235
Cdd:TIGR02168 233 RLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKdrkiENLNAKeIQEKQALIDELNT 315
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESR-LEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 316 RVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNE--RKCSEEIKELMRTVEELQKRNLKDSWL 393
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 394 ETS--AVRRVEQETQRKLSHLQAELDEM-----------YGKQIVQMKQELINQHMSQIEEL---KSQHKREMENTLKSD 457
Cdd:TIGR02168 467 REEleEAEQALDAAERELAQLQARLDSLerlqenlegfsEGVKALLKNQSGLSGILGVLSELisvDEGYEAAIEAALGGR 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 458 TNAAISK------------EQVNLMNAAINELNV-RLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQ 524
Cdd:TIGR02168 547 LQAVVVEnlnaakkaiaflKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 525 KArQTIAEQENRLSEARKSLSTVEdLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 604
Cdd:TIGR02168 627 VV-DDLDNALELAKKLRPGYRIVT-LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 605 RTQLlfsheEELSKLKEDLEVEhrinieklkdnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDl 684
Cdd:TIGR02168 704 RKEL-----EELEEELEQLRKE----------------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA- 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 685 qeclvnskseemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAenniLKEEKR 764
Cdd:TIGR02168 762 --------------EIEELEERLEEAEEELAE---AEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAA 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 765 VLEDKLkmyspsEQEERSIAvdpstsksadsRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 844
Cdd:TIGR02168 821 NLRERL------ESLERRIA-----------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 845 REYTCLLKIRDDLEATQTKQAlEYESKLRALEEELLSKRGNPAAPKGKSSGIfpseTLEIGEVVEKdtteLMEKLEVTKR 924
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQER----LSEEYSLTLE 954
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 568932676 925 EKLELSEKVSGLSEQLKQthctinslsaEVRALKQEKEQL 964
Cdd:TIGR02168 955 EAEALENKIEDDEEEARR----------RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1824-2486 |
6.28e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 6.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPV 1903
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1904 EQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEK---NAELTDLRQQ 1980
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1981 SQALEKQLEKMRKFLDEQAIDR-EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKE 2059
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2060 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaVEADPELSLEVQLQ-------VERDATDR------ 2126
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS---VDEGYEAAIEAALGgrlqavvVENLNAAKkaiafl 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2127 KQKEI---------TNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQ----------ELQQENRLFKDEIEKL 2187
Cdd:TIGR02168 566 KQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2188 GFAMKESDSVsTRDQPMLFG--KFAQLIQEKEIEIDRLNEQFIKLQQQL--------KLTTDNKVIEEQKEQIQDLETQI 2257
Cdd:TIGR02168 646 RIVTLDGDLV-RPGGVITGGsaKTNSSILERRREIEELEEKIEELEEKIaelekalaELRKELEELEEELEQLRKELEEL 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2258 ERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKH----QLDKVTAEKLVLEQQVETTNQV 2333
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREA 804
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2334 MTHMNNVLKEINFKMDQITQSLCNLNKECASNE-ELPSLPKESVHMT------VHELGSDNLQPEDAPAQ--DVTKPLEK 2404
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATErRLEDLEEQIEELSedieslAAEIEELEELIEELESEleALLNERAS 884
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2405 QTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCREQTETIQ---EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQ 2481
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
....*
gi 568932676 2482 MEAAQ 2486
Cdd:TIGR02168 965 DDEEE 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
146-747 |
2.76e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 2.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 146 VEKELAEKQHDIEELTQELEEMRAsfgteglkQLQEFEAAIKQRDGIITQLTANLQQARRekddtmvEFLELTEQSQKLQ 225
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQA-------EEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 226 IQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIEnlnakEIQE 305
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-----ELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 306 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQK 385
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 386 RNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKE 465
Cdd:COG1196 457 EEEALL-ELLAELLEEAALLEAALAELLEELAEA--AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 466 QV------NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSE 539
Cdd:COG1196 534 AAyeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 540 ARKSLSTVEDLKAEIVAASESRKELELKHEAEITnyKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKL 619
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR--EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 620 KEDLEVEHRINIEKLKDnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvnSKSEEMNLQ 699
Cdd:COG1196 692 ELELEEALLAEEEEERE------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA----LEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568932676 700 INELQKEIEILKQEEKEKGTL----EQEVQELQlktEQLEKqLKEKEDDLQE 747
Cdd:COG1196 762 LEELERELERLEREIEALGPVnllaIEEYEELE---ERYDF-LSEQREDLEE 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-973 |
3.69e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 3.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 268 KKEEDLQAQIS-----FLQEKLRAFEMEKDRkienlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH 342
Cdd:TIGR02168 220 AELRELELALLvlrleELREELEELQEELKE-----AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 343 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVRRVEQETQRKLSHLQAELDEMygK 422
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE--------ELAELEEKLEELKEELESLEAELEEL--E 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 423 QIVQMKQELINQHMSQIEELKSQhKREMENTLKSDTNaaiskeQVNLMNAAINELNVRLQETHAQKEELKGELgvVLGEK 502
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSK-VAQLELQIASLNN------EIERLEARLERLEDRRERLQQEIEELLKKL--EEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 503 SALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEaEITNYKIKLEML 582
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 583 EKEKNAVLDRMAESQEAElERLRTQLlfshEEELSKLKEDLEVE----HRINIEKLKDN---------LGIHYKQQIDGL 649
Cdd:TIGR02168 515 QSGLSGILGVLSELISVD-EGYEAAI----EAALGGRLQAVVVEnlnaAKKAIAFLKQNelgrvtflpLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 650 QNEMNRKMESMQCETDNLITQQNQL-------------------ILENSKLRDLQECLV-------------NSKSEEMN 697
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggviTGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 698 LQINELQKEIEilkqeekekgTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSE 777
Cdd:TIGR02168 670 SSILERRREIE----------ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 778 QEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVN---YQELQREYTcLLKIR 854
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELT-LLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 855 dDLEATQTKQALEYESKLRALEEELLSKRgnpaapKGKSSGIFPSETLEIGEvVEKDTTELMEKLEVTKREKLELSEKVS 934
Cdd:TIGR02168 819 -AANLRERLESLERRIAATERRLEDLEEQ------IEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALA 890
|
730 740 750
....*....|....*....|....*....|....*....
gi 568932676 935 GLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 973
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
143-655 |
7.41e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 7.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 143 LQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI-------KQRDGIITQLTANLQQARREKDDTMVEFL 215
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIarleerrRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 216 ELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKI 295
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 296 ENLNA--KEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEI 373
Cdd:COG1196 421 EELEEleEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 374 KELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVqmkQELINQHMSQIEELKSQHKREMEnT 453
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV---VEDDEVAAAAIEYLKAAKAGRAT-F 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 454 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 533
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 534 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLFSHE 613
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE-EELEEEALEEQLEAERE 735
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568932676 614 EELSKLKEDLEVEHRINIEKLKDNLGIH-YKQQIDGLQNEMNR 655
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1821-2328 |
7.48e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 7.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1821 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1900
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1901 GPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQ 1980
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1981 SQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAvpriqpvsehqAREVEQLTNHLKEKTDRCSELLLSKEQ 2060
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-----------AEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2061 LQRDIQERNEEIEKLEcRVRELEQALLASAEPFP--------KVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEIT 2132
Cdd:COG1196 475 LEAALAELLEELAEAA-ARLLLLLEAEADYEGFLegvkaallLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2133 NLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQE----------LQQENRLFKDEIEKLGFAMKESDSVSTRDQ 2202
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2203 PMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVV 2282
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568932676 2283 EKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2328
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
120-767 |
1.16e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 120 LREEEFSLDDSSSEQGAQSSQTCLQM--VEKELAEKQHDIEELTQELEEMRasfgteglKQLQEFEAAIKQRDGIITQLT 197
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 198 ANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQA-----NETLQNST---------LSRTATDLLQAKRQIFTQQQQL 263
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAeleelEAELEELEsrleeleeqLETLRSKVAQLELQIASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 264 QDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHE 343
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 344 QLTQRNQEIQSLKlelgNSQQNERKCSEEIKELMrtveeLQKRNLKDSWLETSAVRRVEQETQRKLS-----HLQA---E 415
Cdd:TIGR02168 483 ELAQLQARLDSLE----RLQENLEGFSEGVKALL-----KNQSGLSGILGVLSELISVDEGYEAAIEaalggRLQAvvvE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 416 LDEMYGKQIVQMKQELINQHM----SQIEELKSQhKREMENTLKSDTNAAISKEQVNLMNAAINELNVRL---------- 481
Cdd:TIGR02168 554 NLNAAKKAIAFLKQNELGRVTflplDSIKGTEIQ-GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddld 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 482 QETHAQKEELKGELGVVL-GE---KSALQSQSNDLLEEVRFLREQ-VQKARQTIAEQENRLSEARKSLSTVEDLKAEIVA 556
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLdGDlvrPGGVITGGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 557 ASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQE--AELERLRTQLLFSHEEELSKLKEDLEVEHRIN--IE 632
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKelTELEAEIEELEERLEEAEEELAEAEAEIEELEaqIE 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 633 KLKDNLGIhYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS--EEMNLQINELQKEIEIL 710
Cdd:TIGR02168 793 QLKEELKA-LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEdiESLAAEIEELEELIEEL 871
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 711 KQE----EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLE 767
Cdd:TIGR02168 872 ESElealLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
180-768 |
1.77e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 180 QEFEAAIKQRDGIITQLTANLQQARREkddtmveflELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQ 259
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELE---------ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 260 QQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLN--AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL 337
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 338 LGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELD 417
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 418 EmygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELN-----VRLQETHAQKEELK 492
Cdd:COG1196 447 A---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 493 GELGVVLGEKSALQSQSNDLLEEVrfLREQVQKARQTIAEQENRLSEARKSLSTVEDL-KAEIVAASESRKELELKHEAE 571
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLdKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 572 ITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEH----RINIEKLKDNLGIHYKQQID 647
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 648 GLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLV----NSKSEEMNLQINELQKEIEILKQEEKEKGTLEQE 723
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEealeEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 724 VQELQLKTEQLEKQLKEKE----------DDLQEKCAQLDAENNILKEEKRVLED 768
Cdd:COG1196 762 LEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1955-2285 |
2.02e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 2.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1955 DVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrehERDVFQQEIQKLEHQLKavpriqpvSEHQA 2034
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL------SRQISALRKDLARLEAE--------VEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2035 REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAdpeLSLE 2114
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2115 VQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEV---QELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAM 2191
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2192 KESDSVstrdqpmlfgkfaqlIQEKEIEIDRLNEQFIKLQ---QQLKLTTDNkVIEEQKEQIQDLETQIERLMSEREHEK 2268
Cdd:TIGR02168 904 RELESK---------------RSELRRELEELREKLAQLElrlEGLEVRIDN-LQERLSEEYSLTLEEAEALENKIEDDE 967
|
330
....*....|....*..
gi 568932676 2269 KQREEEVEQLTGVVEKL 2285
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1922-2298 |
4.47e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 4.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1922 QETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEeQVSRFIEL-EQEKNAELTDLRQQSQALEKQLEKmrkfLDEQAI 2000
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELkAELRELELALLVLRLEELREELEE----LQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2001 DREHERDVFQQEIQKLEHQLKAVPRIQPVSEhqaREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVR 2080
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2081 ELEQALLASAEPFPKVEDQKrsgaveadpeLSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLE 2160
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKL----------EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2161 IQRKEST---TRLQELQQENRLFKDEIEKLGFAMKESDsvstrdqpmlFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLt 2237
Cdd:TIGR02168 397 SLNNEIErleARLERLEDRRERLQQEIEELLKKLEEAE----------LKELQAELEELEEELEELQEELERLEEALEE- 465
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 2238 tdnkvIEEQKEQIQdletQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREG 2298
Cdd:TIGR02168 466 -----LREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
147-972 |
6.29e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.49 E-value: 6.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 147 EKELAEKQHDIEELTQELEemrasfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 226
Cdd:TIGR02169 206 EREKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 227 QFQHLQANETLQ-NSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEmekdrkienlnaKEIQE 305
Cdd:TIGR02169 280 KIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE------------REIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 306 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEEL-- 383
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLna 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 384 ------QKRNLKDSWLETSAVRRVEQEtqRKLSHLQAELDEmYGKQIVQMKQELinqhmSQIEELKSQHKREMEntlKSD 457
Cdd:TIGR02169 428 aiagieAKINELEEEKEDKALEIKKQE--WKLEQLAADLSK-YEQELYDLKEEY-----DRVEKELSKLQRELA---EAE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 458 TNAAISKEQVNLMNAAINELNVRLQETHAqkeeLKGELGVVlGEK--SALQSQSNDLLEEVRFLREQVQKARQTIAEQEN 535
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQGVHG----TVAQLGSV-GERyaTAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 536 rlsEARKSLSTVEDLKAEivaasesRKELELKHEAEITNYKIKL-EMLEKEKNA---------VLDRMAESQ-------- 597
Cdd:TIGR02169 572 ---AGRATFLPLNKMRDE-------RRDLSILSEDGVIGFAVDLvEFDPKYEPAfkyvfgdtlVVEDIEAARrlmgkyrm 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 598 ---EAEL-----------ERLRTQLLFSHEEElsklKEDLEVEHRinIEKLKDNLGIhYKQQIDGLQNEMNRKMESMQCE 663
Cdd:TIGR02169 642 vtlEGELfeksgamtggsRAPRGGILFSRSEP----AELQRLRER--LEGLKRELSS-LQSELRRIENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 664 TDNLITQQNQLILENSKLRDLQECLVNSKSeemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKED 743
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEE-----DLSSLEQEIENVKSELKE---LEARIEELEEDLHKLEEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 744 DL-QEKCAQLDAENNILKEEKrvledklkmyspSEQEERSIAVDPSTSKSadsrwQKEVAMLRKETEDLQQQCLYLN--- 819
Cdd:TIGR02169 787 RLsHSRIPEIQAELSKLEEEV------------SRIEARLREIEQKLNRL-----TLEKEYLEKEIQELQEQRIDLKeqi 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 820 -------EEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAAPKGK 892
Cdd:TIGR02169 850 ksiekeiENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA----QLRELERKIEELEAQIEKKRKRLSELKAK 925
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 893 SSGIFpSETLEIGEVVEKDTTELMEK--LEVTKREKLELSEKVSGLS-------EQLKQTHCTINSLSAEVRALKQEKEQ 963
Cdd:TIGR02169 926 LEALE-EELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
....*....
gi 568932676 964 LLLRCGELE 972
Cdd:TIGR02169 1005 ILERIEEYE 1013
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
122-934 |
7.32e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.56 E-value: 7.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 122 EEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEElTQELEEMRASFGTEGLKQLQEFEAAIKQRDgiitqlTANLQ 201
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAARKAEE------ERKAE 1215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 202 QARREKDDTMVEFLELTEQSQKlqiQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQ 281
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKK---DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 282 EKLRafEMEKDRKIENLNAKEIQEKQAliDELNTRVVEEEKKTVELKNKV---TTADELLGGLHEQLTQRNQEIQSLKLE 358
Cdd:PTZ00121 1293 DEAK--KAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAeeaKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 359 LGNSQQNERKCSEEIK---ELMRTVEELQKRNLKDSwLETSAVRRVEQEtQRKLSHLQAELDEMygKQIVQMKQELINQH 435
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKkkaEEKKKADEAKKKAEEDK-KKADELKKAAAA-KKKADEAKKKAEEK--KKADEAKKKAEEAK 1444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 436 MSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAA--INELNVRLQETHAQKEELKGelgvvlgeksalQSQSNDLL 513
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKK------------AAEAKKKA 1512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 514 EEVRFLREQVQKARQTIAEQENRLSEARKSlstVEDLKAEIVAASESRKELELKHEAEitnykiKLEMLEKEKNAVLDRM 593
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKA---EEKKKADELKKAEELKKAEEKKKAE------EAKKAEEDKNMALRKA 1583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 594 AESQEAELERLRTQLLFSHEEELSKLKE-DLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLITQQ 671
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEEKKKvEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 672 NQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEkcaq 751
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA---- 1739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 752 ldaennilKEEKRVLEDKLKmyspSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEiEKQRNTFAf 831
Cdd:PTZ00121 1740 --------EEDKKKAEEAKK----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD-KKIKDIFD- 1805
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 832 aekNFEvNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGI---FPSETleigEVV 908
Cdd:PTZ00121 1806 ---NFA-NIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKeadFNKEK----DLK 1877
|
810 820
....*....|....*....|....*.
gi 568932676 909 EKDTTELMEKLEVTKREKLELSEKVS 934
Cdd:PTZ00121 1878 EDDEEEIEEADEIEKIDKDDIEREIP 1903
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1762-2471 |
1.68e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 1.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKvTQTELMrESFRQKQEATESLHCLEELRERLQEESRaREQLAEELNKAESVIDGYS 1841
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLE-RQAEKA-ERYKELKAELRELELALLVLRLEELREE-LEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1842 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEqrpiDAAAGAARGAEFL 1921
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE----AQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1922 QETEKLMKEKLEvqcQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKFLdeQ 1998
Cdd:TIGR02168 336 AEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERLEARL--E 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1999 AIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECR 2078
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2079 VRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVerDATDRKQKEITnLEEQLEQFREELENKNDEVQELLMQ 2158
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--DEGYEAAIEAA-LGGRLQAVVVENLNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2159 LEIQRK----ESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIeiDRLNEQFIKLQQQL 2234
Cdd:TIGR02168 568 NELGRVtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDL--DNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2235 KLTTD------------------NKVIEEQKEQIQDLETQIERlMSEREHEKKQR----EEEVEQLTGVVEKLQQEVVST 2292
Cdd:TIGR02168 646 RIVTLdgdlvrpggvitggsaktNSSILERRREIEELEEKIEE-LEEKIAELEKAlaelRKELEELEEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2293 EQQ----REGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEEL 2368
Cdd:TIGR02168 725 SRQisalRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2369 pslpKESVHMTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEaSRTQEIESLASSVGAKDVELTQCREQTETIQ 2448
Cdd:TIGR02168 805 ----LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE-ELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740
....*....|....*....|....*.
gi 568932676 2449 E---QAQSETDRLQKKLTDLQRSLEK 2471
Cdd:TIGR02168 880 NeraSLEEALALLRSELEELSEELRE 905
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1762-2296 |
2.56e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 2.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1841
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1842 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEagpvEQRPIDAAAGAARGAEFL 1921
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE----LLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1922 QETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDE--QA 1999
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEllEE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2000 IDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKlecRV 2079
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA---AA 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2080 RELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQL 2159
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2160 EIQRKESTTRLQELQQENRLfkdeiekLGFAMKESDSVSTRDQPMLfgkfAQLIQEKEIEIDRLNEQFIKLQQQLKLTTD 2239
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSL-------TGGSRRELLAALLEAEAEL----EELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 2240 NKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR 2296
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1762-2355 |
4.35e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 4.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1841
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1842 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELES----DQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARG 1917
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESrleeLEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1918 AEFLQETEKLMKEKLEVQcqAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDE 1997
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAE--LKELQAELEELEEELE-ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1998 QAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEH-------------------QAREVEQLT------NHLKEKTDRCS 2052
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlQAVVVENLNaakkaiAFLKQNELGRV 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2053 ELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKV------------------------------------ 2096
Cdd:TIGR02168 574 TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalelakklrpgyrivtldgd 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2097 -----------EDQKRSGAVEADPELS--------LEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLM 2157
Cdd:TIGR02168 654 lvrpggvitggSAKTNSSILERRREIEeleekieeLEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2158 QLEIQRKESTT----------RLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPML------FGKFAQLIQEKEIEID 2221
Cdd:TIGR02168 734 DLARLEAEVEQleeriaqlskELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeeLKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2222 RLNEQFikLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGART 2301
Cdd:TIGR02168 814 LLNEEA--ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568932676 2302 LPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSL 2355
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
130-877 |
4.72e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 4.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 130 SSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDD 209
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 210 TMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEM 289
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 290 EKDRKIEnlnakEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKC 369
Cdd:TIGR02169 407 ELDRLQE-----ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 370 SEEIKELMRTVEEL--QKRNLKDSWLETSAVRRVEQETQRKLSHLQAEL---DEMYGKQI----------VQMKQELINQ 434
Cdd:TIGR02169 482 EKELSKLQRELAEAeaQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvGERYATAIevaagnrlnnVVVEDDAVAK 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 435 hmSQIEELKSQHKREME----NTLKSDTN--AAISKEQVnlMNAAINELN----------------VRLQETHAQKE--- 489
Cdd:TIGR02169 562 --EAIELLKRRKAGRATflplNKMRDERRdlSILSEDGV--IGFAVDLVEfdpkyepafkyvfgdtLVVEDIEAARRlmg 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 490 -----ELKGEL----GVVLG---EKSALQSQSNDLLEEVRFLREQVQK-------ARQTIAEQENRLSEARKSLStveDL 550
Cdd:TIGR02169 638 kyrmvTLEGELfeksGAMTGgsrAPRGGILFSRSEPAELQRLRERLEGlkrelssLQSELRRIENRLDELSQELS---DA 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 551 KAEIVAASESRKELELKHEA---EITNYKIKLEMLEKEKNAVLDRMAESqEAELERLrtqllfshEEELSKLKEDLeveh 627
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKlkeRLEELEEDLSSLEQEIENVKSELKEL-EARIEEL--------EEDLHKLEEAL---- 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 628 riniEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNsKSEEMNLQINELQKEI 707
Cdd:TIGR02169 782 ----NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-QRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 708 EILKqeeKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNILKEEKRVLE---DKLKMYSPSEQEERSIA 784
Cdd:TIGR02169 857 ENLN---GKKEELEEELEELEAALRDLESRLG----DLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEAL 929
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 785 VDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeknfEVNYQELQrEYTCLLKIRDDLEATQTKQ 864
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE----------PVNMLAIQ-EYEEVLKRLDELKEKRAKL 998
|
810
....*....|...
gi 568932676 865 ALEYESKLRALEE 877
Cdd:TIGR02169 999 EEERKAILERIEE 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
192-860 |
8.49e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 8.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 192 IITQLTANLQQARREKDDTMvEFLELTEQSQKLQIQ-----FQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDY 266
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE-RYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 267 QKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQ 344
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARleQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 345 LTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQI 424
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 425 VQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQV-NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKS 503
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLeAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 504 ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRkelelkheaeitnykiklemLE 583
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK--------------------AG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 584 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNlgihykqqIDGLQNEMNRKMESMQCE 663
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT--------LVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 664 TDNLITQQNQLILENSKLRDLQEclvNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKED 743
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 744 DLQEKCAQLDAENNILKEEkrvLEDKLKMYSPSEQEERSIAVDPSTsksadsrWQKEVAMLRKETEDLQqqclylneeie 823
Cdd:COG1196 722 EEEALEEQLEAEREELLEE---LLEEEELLEEEALEELPEPPDLEE-------LERELERLEREIEALG----------- 780
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 568932676 824 kqrntfafaeknfEVN------YQELQREYTCLLKIRDDLEAT 860
Cdd:COG1196 781 -------------PVNllaieeYEELEERYDFLSEQREDLEEA 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
344-755 |
3.58e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 3.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 344 QLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVRRVEQETQRKLSHLQAELDEMygKQ 423
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE--------ELEQLRKELEELSRQISALRKDLARL--EA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 424 IVQMKQELINQHMSQIEELksqhkrementlksdtnaaisKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKS 503
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTEL---------------------EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 504 ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLstvEDLKAEIVAASESRKELelkhEAEITNYKIKLEMLE 583
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL---EDLEEQIEELSEDIESL----AAEIEELEELIEELE 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 584 KEKNAVLDRMAESQEAelerlrtqlLFSHEEELSKLKEDLEvEHRINIEKLKDNLgihykQQIDGLQNEMNRKMESMQCE 663
Cdd:TIGR02168 873 SELEALLNERASLEEA---------LALLRSELEELSEELR-ELESKRSELRREL-----EELREKLAQLELRLEGLEVR 937
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 664 TDNLITQQnqlileNSKLRDLQEcLVNSKSEEMNLQINELQKEIEILKQEEKEKG----TLEQEVQELQLKTEQLEKQ-- 737
Cdd:TIGR02168 938 IDNLQERL------SEEYSLTLE-EAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQke 1010
|
410
....*....|....*....
gi 568932676 738 -LKEKEDDLQEKCAQLDAE 755
Cdd:TIGR02168 1011 dLTEAKETLEEAIEEIDRE 1029
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
437-974 |
7.48e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.55 E-value: 7.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 437 SQIEELKSQHKREMENTLKSdtnaaiskeqvnlmnaaINELNVRLQETHAQKEEL---KGELGVVLGEKSALQSQSNDLL 513
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLRE-----------------INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 514 EEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRM 593
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 594 --AESQEAELERLRtQLLFSHEEELSKLKEDLEVEHRI-----NIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDN 666
Cdd:PRK03918 331 keLEEKEERLEELK-KKLKELEKRLEELEERHELYEEAkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 667 LITQQNQLILENSKLRDLQECLVNSKSE--EMNLQINELQKEiEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDD 744
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 745 LqEKCAQLDAENNILkEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQ--------KEVAMLRKETEDLQQQCL 816
Cdd:PRK03918 489 L-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEikslkkelEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 817 YLNEE---IEKQRNTFAF-AEKNFEVNYQELQ---REYTCLLKIRDDLEATQTKQALEyESKLRALEEELlskrgnpaap 889
Cdd:PRK03918 567 ELEEElaeLLKELEELGFeSVEELEERLKELEpfyNEYLELKDAEKELEREEKELKKL-EEELDKAFEEL---------- 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 890 kGKSSGIFPSETLEIGEVVEKDTTELMEKLEvtkREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCG 969
Cdd:PRK03918 636 -AETEKRLEELRKELEELEKKYSEEEYEELR---EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
....*
gi 568932676 970 ELELL 974
Cdd:PRK03918 712 ELEKL 716
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
152-525 |
1.09e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 152 EKQHDIEELTQELEEMRAsfgteglkQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHL 231
Cdd:TIGR02168 674 ERRREIEELEEKIEELEE--------KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 232 QANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEmekdrkienlnaKEIQEKQALID 311
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR------------EALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 312 ELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELM--RTVEELQKRNLK 389
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLneRASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 390 DSWLETSAVRRVEQETQRKLSHLQAELDEMYGkQIVQMKQELINQHMSQIEELKSQHKREME----NTLKSDTNAAISKE 465
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLSEEYSLTLEeaeaLENKIEDDEEEARR 972
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 466 QVNLMNAAINEL-NVRLqETHAQKEELKgelgvvlGEKSALQSQSNDLLEEVRFLREQVQK 525
Cdd:TIGR02168 973 RLKRLENKIKELgPVNL-AAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2992-3327 |
1.50e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2992 EMQLELSSLRDRAAELQEQLSS--------EKmvVAELKSELAQAKLELG-----------TTLKAQHKRLK-ELEAFRS 3051
Cdd:COG1196 183 ATEENLERLEDILGELERQLEPlerqaekaER--YRELKEELKELEAELLllklreleaelEELEAELEELEaELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3052 EVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQ 3131
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3132 QKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEE 3211
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE-------------LAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3212 KHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3291
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350
....*....|....*....|....*....|....*.
gi 568932676 3292 RLQGLMQEFQKQELEPEEKPGSRGLVDQNLNEPATW 3327
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
139-845 |
2.26e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.30 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 139 SQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELT 218
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 219 EQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENL 298
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 299 NAKEI--QEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNsqQNERKCSEEIKEL 376
Cdd:pfam02463 479 LVKLQeqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV--AISTAVIVEVSAT 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 377 MRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKS 456
Cdd:pfam02463 557 ADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 457 DTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLgEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENR 536
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 537 LSEARKSL----STVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSH 612
Cdd:pfam02463 716 KLEAEELLadrvQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 613 EEELSKLKEDLEVEHRINIEKLK-DNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLqeclvNS 691
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAELLEeEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL-----LQ 870
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 692 KSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEK 950
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 772 MYSPSEQEERSIAVDPSTSKSAdsrwQKEVAMLRKETEDLQQQclYLNEEIEKQRNTFAFAEKNFEVNYQELQR 845
Cdd:pfam02463 951 EENNKEEEEERNKRLLLAKEEL----GKVNLMAIEEFEEKEER--YNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
268-973 |
3.48e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.68 E-value: 3.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 268 KKEEDLQAQISFLQEKLRAFEMEKDrKIENLNAKEIQEKQALIDELNTRVVEEEK----KTVELKNKVTTADELLGGL-- 341
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEMQMERD-AMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMls 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 342 HEQLTQrnqEIQSLKLELgnsqqnERKCSEEIKElMRTVEELQKRNLKdswletSAVRRVEQETQRKLSHLQAEL----D 417
Cdd:pfam15921 182 HEGVLQ---EIRSILVDF------EEASGKKIYE-HDSMSTMHFRSLG------SAISKILRELDTEISYLKGRIfpveD 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 418 EMYG-KQIVQMKQELI-NQHMSQIEELKSQHKREMENTLKSDTNA-----------AISKEQVNLMNA-----------A 473
Cdd:pfam15921 246 QLEAlKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSArsqansiqsqlEIIQEQARNQNSmymrqlsdlesT 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 474 INELNVRLQET----HAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 549
Cdd:pfam15921 326 VSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 550 LK-AEIVAASESRKELELKHeAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLR-----TQLLFSHEEELSKLKEDL 623
Cdd:pfam15921 406 RDtGNSITIDHLRRELDDRN-MEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvsslTAQLESTKEMLRKVVEEL 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 624 EVEhRINIEKLKDNLgihykQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSE--EMNLQIN 701
Cdd:pfam15921 485 TAK-KMTLESSERTV-----SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceALKLQMA 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 702 ELQKEIEILKQEEKEK----GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKE-EKRVLE---DKLKMY 773
Cdd:pfam15921 559 EKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRElEARVSDlelEKVKLV 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 774 SPSEQEERSIavdpstsksadsrwqkevamlrketEDLQQQCLYLNEEIEKQRNTFafaeKNFEVNYQELQREYTcllKI 853
Cdd:pfam15921 639 NAGSERLRAV-------------------------KDIKQERDQLLNEVKTSRNEL----NSLSEDYEVLKRNFR---NK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 854 RDDLEATQTKQALEYESKLRALEEE---LLSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTELMEKLEVTKREKLE 928
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTrntLKSMEGSDGHAMKVAMGMQKQITAKRGQIdaLQSKIQFLEEAMTNANKEKHF 766
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568932676 929 LSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 973
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
255-771 |
3.55e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.20 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 255 QIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRK---IENLNAKEIQEKQAL--IDELNTRVVEEEKKTVELKN 329
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIqknIDKIKNKLLKLELLLsnLKKKIQKNKSLESQISELKK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 330 KVTTadellggLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELmrtveelqKRNLKDSWLETSAVRRVEQETQRKL 409
Cdd:TIGR04523 226 QNNQ-------LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI--------KKQLSEKQKELEQNNKKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 410 SHLQAELDEMYGkqivQMKQELINQHMSQIEELKSQhKREMENTLkSDTNAAIS--KEQVNLMNAAINELNVRLQETHAQ 487
Cdd:TIGR04523 291 NQLKSEISDLNN----QKEQDWNKELKSELKNQEKK-LEEIQNQI-SQNNKIISqlNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 488 KEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVE----DLKAEIVAASESRKE 563
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEkeieRLKETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 564 LElkheAEITNYKIKLEMLEKEKnavldrmaESQEAELERLrtqllfshEEELSKLKEDLEVEHRINIEKLKDNLGI-HY 642
Cdd:TIGR04523 445 LT----NQDSVKELIIKNLDNTR--------ESLETQLKVL--------SRSINKIKQNLEQKQKELKSKEKELKKLnEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 643 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRD-LQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 721
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 568932676 722 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1546-2287 |
5.31e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 5.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1546 EQLEDMRQELVRQYEEHQQATEMLRQAHM---QQMERQREDQEQLQEEIKRLNEQLAQDGH--DDQEVEEQTLKDKTLER 1620
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISrleQQKQILRERLANLERQLEELEAQLEELESklDELAEELAELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1621 SPEDALLDRNLSNERYALKKANNRLLKilLEVVKTTSAAEetIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPED 1700
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEE--LEEQLETLRSK--VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1701 CARAMDESIPSYPGTAIATHDSIWSKVTEEGAELSQRLvrsgfagpvidpeneelmlnisSRLQAAVEKLLEAISETNTQ 1780
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEAL----------------------EELREELEEAEQALDAAERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1781 LEH--AKVTQTELMRESFRQKQEATESLhcLEELRERLQEESRAREQL--AEELNKAESVIDGYSDEKTLFERQiQEKTD 1856
Cdd:TIGR02168 484 LAQlqARLDSLERLQENLEGFSEGVKAL--LKNQSGLSGILGVLSELIsvDEGYEAAIEAALGGRLQAVVVENL-NAAKK 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1857 IIEHLEQEVLCMNNRLQE-LESDQRRVEEERQLLCRQREAMRAEAGPVEQRP----------------------IDAAAG 1913
Cdd:TIGR02168 561 AIAFLKQNELGRVTFLPLdSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalsyllggvlvvddldnaLELAKK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1914 AARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK 1993
Cdd:TIGR02168 641 LRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1994 FLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIE 2073
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2074 KLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQ 2153
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIA---ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2154 ELL---MQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmLFGKFAQLIQEKEIEIDRLNEQFIKL 2230
Cdd:TIGR02168 877 ALLnerASLEEALALLRSELEELSEELRELESKRSELRRELEELRE--------KLAQLELRLEGLEVRIDNLQERLSEE 948
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 2231 QQ-------QLKLTTDNKvIEEQKEQIQDLETQIERL-------MSEREHEKKQREE---EVEQLTGVVEKLQQ 2287
Cdd:TIGR02168 949 YSltleeaeALENKIEDD-EEEARRRLKRLENKIKELgpvnlaaIEEYEELKERYDFltaQKEDLTEAKETLEE 1021
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
144-842 |
7.51e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 7.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 144 QMVEKELAEKQHDIEELTQELEEmrasfgTEGLKQLQEFEAaikqRDGIItQLTANLQQARREKDdTMVEFLELTEQSQ- 222
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 223 ----KLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENL 298
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 299 NAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH----EQLTQRNQ-EIQSL--KLELGNSQQNERKCSE 371
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHqdriEQLISEHEvEITGLteKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 372 E-IKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDemygKQIVQMKQEL---------INQHMSQIEE 441
Cdd:pfam15921 302 EiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE----KQLVLANSELtearterdqFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 442 -----LKSQHKREMENTLKSDTNAAI------SKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSN 510
Cdd:pfam15921 378 qlqklLADLHKREKELSLEKEQNKRLwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 511 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLS----TVEDLKAEI-------------VAASESRKELELKHEAEIT 573
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLEsserTVSDLTASLqekeraieatnaeITKLRSRVDLKLQELQHLK 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 574 NYKIKLEMLEKEKNAVLDRMAESQEAeLERLR------TQLLFSHEEELSKLK-EDLEVEHRINIEKLKDNLGIHYKQQI 646
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKV-IEILRqqienmTQLVGQHGRTAGAMQvEKAQLEKEINDRRLELQEFKILKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 647 DGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNlQINELQKEIEILKQEEKEKGtleqevQE 726
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN-ELNSLSEDYEVLKRNFRNKS------EE 689
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 727 LQLKTEQLEKQLKEKEDDLQE----------------------------KCAQLDAENNILKEEKRVLEDKLKMYSPSEQ 778
Cdd:pfam15921 690 METTTNKLKMQLKSAQSELEQtrntlksmegsdghamkvamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKE 769
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 779 EERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQClyLNEEIEKQRNTFAFAEKNFEVNYQE 842
Cdd:pfam15921 770 EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV--ANMEVALDKASLQFAECQDIIQRQE 831
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
181-972 |
9.40e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.99 E-value: 9.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 181 EFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQhlQANETLQNSTLSRTATDLLQAKRQIFTQQ 260
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 261 QQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELL 338
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQvlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 339 gGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSwletsavrrVEQETQRKLSHLQAELDE 418
Cdd:pfam02463 317 -KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL---------EQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 419 MYGKQIVQMKQELINQhMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVV 498
Cdd:pfam02463 387 SSAAKLKEEELELKSE-EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 499 LGEKSALQSQSNDLLEEVRFLREQVQKARQ---TIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNY 575
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLeerSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 576 KIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSK--LKEDLEVEHRINIEKLKDNLGIHYKQQID------ 647
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlpLKSIAVLEIDPILNLAQLDKATLEADEDDkrakvv 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 648 GLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQEL 727
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 728 QLKTEQLEKQLKEKEDDLQEKC-AQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPStsksadsrwQKEVAMLRK 806
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVqEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS---------ELSLKEKEL 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 807 ETEDLQQQCLYLNEEIEKQRNtfafaEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNP 886
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLK-----AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 887 AAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLL 966
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILL 931
|
....*.
gi 568932676 967 RCGELE 972
Cdd:pfam02463 932 KYEEEP 937
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1762-2289 |
1.06e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKVTQTEL---MRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVID 1838
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1839 GYSDEKtlfERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGA 1918
Cdd:COG1196 372 AELAEA---EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1919 EFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRF-IELEQEKNAELTDLRQQSQALEKQLEKMRKFLDE 1997
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1998 QAIDREHERDVFQQEiqklehqlkAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLEC 2077
Cdd:COG1196 529 LIGVEAAYEAALEAA---------LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2078 RVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLM 2157
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2158 QLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLIQEKEIEIDRLNEQFIKLQQQLKLT 2237
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE----EQLEAEREELLEELLEEEELLEEEALEE 755
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2238 -TDNKVIEEQKEQIQDLETQIERL-----MSEREHE---------KKQR---EEEVEQLTGVVEKLQQEV 2289
Cdd:COG1196 756 lPEPPDLEELERELERLEREIEALgpvnlLAIEEYEeleerydflSEQRedlEEARETLEEAIEEIDRET 825
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1762-2287 |
1.12e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKVTQTEL--MRESFRQKQEATESLhcleelrerlqeesrareqlAEELNKAESVIDG 1839
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEAdeVLEEHEERREELETL--------------------EAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1840 YSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpVEQRPidaaagaaRGAE 1919
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL--EECRV--------AAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1920 FLQETEKLMKEKLEVQCQAEKVR---GDLQKQVKALEIDVEEQVSRFIELEqeknAELTDLRQQSQALEKQLEKMRKFLD 1996
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELReeaAELESELEEAREAVEDRREEIEELE----EEIEELRERFGDAPVDLGNAEDFLE 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1997 EqaidREHERDVFQQEIQKLEHQLKAVpriqpvsEHQAREVEQLtnhLKE-KTDRCSELLLSKEQLQRdIQERNEEIEKL 2075
Cdd:PRK02224 416 E----LREERDELREREAELEATLRTA-------RERVEEAEAL---LEAgKCPECGQPVEGSPHVET-IEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2076 ECRVRELEQALLASAEPFPKVEDqkrsgAVEAdpelslEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEL 2155
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAED-----LVEA------EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2156 LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVST-RDQpmlfgkfAQLIQEKEIEIDRLNEQFIKLQ--- 2231
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTL-------LAAIADAEDEIERLREKREALAeln 622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2232 --------------QQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQ 2287
Cdd:PRK02224 623 derrerlaekrerkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1921-2286 |
1.49e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1921 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQSQALEKQLEKMRKFLDE 1997
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEedlSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1998 -QAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNhlkektdrcsELLLSKEQLQRDIQERNEEIEKLE 2076
Cdd:TIGR02169 777 lEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN----------RLTLEKEYLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2077 CRVRELEQALlasaepfpkVEDQKRSGAVEADPElslEVQLQVeRDATDRK---QKEITNLEEQLEqfreELENKNDEVQ 2153
Cdd:TIGR02169 847 EQIKSIEKEI---------ENLNGKKEELEEELE---ELEAAL-RDLESRLgdlKKERDELEAQLR----ELERKIEELE 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2154 ELLMQLEIQRKESTTRLQELQQENrlfkDEIEKLGFAMKESDSvstrdQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQ 2233
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIPE-----EELSLEDVQAELQRVEEEIRALEPVNMLAIQE 980
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 2234 LklttdnkviEEQKEQIQDLETQIERLMSER--------EHEKKQREEEVEQLTGVVEKLQ 2286
Cdd:TIGR02169 981 Y---------EEVLKRLDELKEKRAKLEEERkailerieEYEKKKREVFMEAFEAINENFN 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1939-2293 |
1.71e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1939 EKVRGDLQKqvkaleidVEEQVSRFIELEQEKnaeltdlRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2018
Cdd:TIGR02169 173 EKALEELEE--------VEENIERLDLIIDEK-------RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2019 QLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEE--------IEKLECRVRELEQALLASA 2090
Cdd:TIGR02169 238 QKEA---IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2091 EPFPKVEDQKRSGAVEADPELS----LEVQLQVERDATDRKQKEITNLEEQLEQFR---EELENKNDEVQELLMQLEIQR 2163
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAeieeLEREIEEERKRRDKLTEEYAELKEELEDLRaelEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2164 KESTTRLQELQQENRLFKDEIEKLGFAMKESDSvstrDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQlklttdNKVI 2243
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQL------AADL 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568932676 2244 EEQKEQIQDLETQIERLmsEREHEKKQRE-EEVEQLTGVVEKLQQEVVSTE 2293
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRV--EKELSKLQRElAEAEAQARASEERVRGGRAVE 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1791-2178 |
1.77e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1791 LMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKaesvidgysdektlFERQIQEKTDIIEHLEQEvlcmnn 1870
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK--------------LKERLEELEEDLSSLEQE------ 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1871 rLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPidaaagaarGAEFLQEteklmkeklevqcqaekvrgdLQKQVK 1950
Cdd:TIGR02169 753 -IENVKSELKELEARIEELEEDLHKLEEALNDLEARL---------SHSRIPE---------------------IQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1951 ALEIDVEEQVSRFIELEQEKNAEltdlrqqsQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIqpVS 2030
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRL--------TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE--LE 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2031 EHQArEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPE 2110
Cdd:TIGR02169 872 ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 2111 LSLEvQLQVERdatDRKQKEITNLEE---QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENR 2178
Cdd:TIGR02169 951 LSLE-DVQAEL---QRVEEEIRALEPvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2010-2330 |
2.65e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 2.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2010 QQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLAs 2089
Cdd:TIGR02169 680 RERLEGLKRELS---SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN- 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2090 aepfpkvedqkrsgaveadpelslevqlqvERDATDRKQKEITNLEEQLEQFREELEnkndevqellmqlEIQRKESTTR 2169
Cdd:TIGR02169 756 ------------------------------VKSELKELEARIEELEEDLHKLEEALN-------------DLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2170 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLttDNKVIEEQKEQ 2249
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKEIQELQEQRIDLKEQIKSIEKEIEN--LNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2250 IQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVET 2329
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
.
gi 568932676 2330 T 2330
Cdd:TIGR02169 950 E 950
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
403-1161 |
3.04e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 3.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 403 QETQRKLSHLQAELdemYGKQIVQMKQELiNQHMSQIEELKSQHKREmentlksdtnaaisKEQVNLMNAAINELNVRLQ 482
Cdd:TIGR02168 216 KELKAELRELELAL---LVLRLEELREEL-EELQEELKEAEEELEEL--------------TAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 483 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIvaasesrk 562
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 563 elelkhEAEITNYKIKLEMLEKEKNAVLDRMAESQEaELERLRtQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGIhY 642
Cdd:TIGR02168 350 ------KEELESLEAELEELEAELEELESRLEELEE-QLETLR-SKVAQLELQIASLNNEIE-RLEARLERLEDRRER-L 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 643 KQQIDGLQNEMNRKmesmqcetdNLITQQNQLILENSKLRDLQECLvnsksEEMNLQINELQKEIEILKQEEKEkgtLEQ 722
Cdd:TIGR02168 420 QQEIEELLKKLEEA---------ELKELQAELEELEEELEELQEEL-----ERLEEALEELREELEEAEQALDA---AER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 723 EVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKmyspseqeersiaVDPSTSKSADSRWQKEVA 802
Cdd:TIGR02168 483 ELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-------------VDEGYEAAIEAALGGRLQ 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 803 MLRKETEDLQQQCLYLNEEIEKQRNTF----AFAEKNFEVNYQELQREYTCLLKIRDDLEATQTK--------------- 863
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 864 ----QALEYESKLRA------LEEELLSKRG--NPAAPKGKSSGIFPS-------ETLEIGE-----------VVEKDTT 913
Cdd:TIGR02168 629 ddldNALELAKKLRPgyrivtLDGDLVRPGGviTGGSAKTNSSILERRreieeleEKIEELEekiaelekalaELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 914 ELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSgTENAAVCPVQMSSY 993
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-EEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 994 QAglvmgKVGDSGGSISKISKDLAEESKPMIEDKIPF-KESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQD 1072
Cdd:TIGR02168 788 EA-----QIEQLKEELKALREALDELRAELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1073 DLRLQMEAQRICLfvvysTHADQVRAHME---KEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEpLQV 1149
Cdd:TIGR02168 863 ELEELIEELESEL-----EALLNERASLEealALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-LEV 936
|
810
....*....|..
gi 568932676 1150 LIERLQQAVSEK 1161
Cdd:TIGR02168 937 RIDNLQERLSEE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1821-2318 |
3.25e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 3.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1821 RAREQLAEELNKAESV---IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERqllcRQREAMR 1897
Cdd:PRK03918 176 RRIERLEKFIKRTENIeelIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----KELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1898 AEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVR--GDLQKQVKALEIDVEEQVSRFIELEQEKNAELT 1975
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIklSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1976 DLRQQSQALEKQLEKMRKFLDEQAIDREHERdVFQQEIQKLEHQLKAVPRIQPVS-EHQAREVEQLTNHLKEKTDRCSEL 2054
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2055 LLSKEQLQRDIQERNEEIEKLE-----CRV--RELEQ---------------ALLASAEPFPKVEDQKRSGAVEADPELS 2112
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKkakgkCPVcgRELTEehrkelleeytaelkRIEKELKEIEEKERKLRKELRELEKVLK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2113 LEVQLQVERDATDrkqkEITNLEEQLEQFR-EELENKNDEVQEL--------------------LMQLEIQRKESTTRLQ 2171
Cdd:PRK03918 491 KESELIKLKELAE----QLKELEEKLKKYNlEELEKKAEEYEKLkekliklkgeikslkkelekLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2172 ELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQL------IQEKEIEIDRLNEQFIKLQQQLKLTtdNKVIEE 2245
Cdd:PRK03918 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELkdaekeLEREEKELKKLEEELDKAFEELAET--EKRLEE 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2246 QKEQIQDLEtqieRLMSEREHEKKQRE------------EEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQL 2313
Cdd:PRK03918 645 LRKELEELE----KKYSEEEYEELREEylelsrelaglrAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
....*
gi 568932676 2314 DKVTA 2318
Cdd:PRK03918 721 ERVEE 725
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1762-2264 |
3.71e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1841
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1842 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEFL 1921
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1922 QETEKLMKEKLEVQcQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN-----------------AELTDLRQQSQAL 1984
Cdd:COG1196 473 ALLEAALAELLEEL-AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayeaALEAALAAALQNI 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1985 EKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRD 2064
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2065 IQERNEEIEKLECRVRELEQALLASAEpfpkveDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREE 2144
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSA------GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2145 LENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLgfamkESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLN 2224
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL-----EEEALEELPEPPDLEELERELERLEREIEALG 780
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 568932676 2225 -------EQFIKLQQQLK-LTTDNKVIEEQKEQIQDLETQIERLMSER 2264
Cdd:COG1196 781 pvnllaiEEYEELEERYDfLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
121-624 |
5.43e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 5.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 121 REEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRAsfgtEGLKQLQEFEAAIKQRDGIITQLtANL 200
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEAL-LEA 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 201 QQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFL 280
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 281 QEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELg 360
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL- 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 361 nsqqneRKCSEEIKELMRTVEE--LQKRNLKDswlETSAVRRVEQETQRKLSHLQAE-LDEMYGKQIVQMKQELINQHMS 437
Cdd:COG1196 530 ------IGVEAAYEAALEAALAaaLQNIVVED---DEVAAAAIEYLKAAKAGRATFLpLDKIRARAALAAALARGAIGAA 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 438 QIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAainelNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVR 517
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAA-----LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 518 FLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQ 597
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
490 500
....*....|....*....|....*..
gi 568932676 598 EAELERLRTQllfshEEELSKLKEDLE 624
Cdd:COG1196 756 LPEPPDLEEL-----ERELERLEREIE 777
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
325-824 |
6.36e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 6.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 325 VELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKR--NLKDSwletsavrrvE 402
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQikDLNDK----------L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 403 QETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENtlKSDTNAAISKEQVNLmnaaiNELNVRLQ 482
Cdd:TIGR04523 92 KKNKDKINKLNSDLSKI--NSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTEIKKKEKEL-----EKLNNKYN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 483 ETHAQKEELKGELGVVLGEKS-------------------------------ALQSQSNDLLEEVRFLREQVQKARQTIA 531
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLniqknidkiknkllklelllsnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 532 EQENRLSEARKSLSTVEDLKAEIVAaSESRKELELKH--------EAEITNYKIKLEMLEKEKNAVLDRMA----ESQEA 599
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKK-QLSEKQKELEQnnkkikelEKQLNQLKSEISDLNNQKEQDWNKELkselKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 600 ELERLRTQLLFShEEELSKLKEDLEvehriNIEKLKDNLGIHyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENS 679
Cdd:TIGR04523 322 KLEEIQNQISQN-NKIISQLNEQIS-----QLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 680 KLrdlqeclvNSKSEEMNLQINELQKEIEILkqeEKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNIL 759
Cdd:TIGR04523 395 DL--------ESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIERLKETIIKNNSEIK----DLTNQDSVKELIIKNL 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 760 KEEKRVLEDKLKMYSPSEQEERSIAVDpsTSKSADSRwQKEVAMLRKETEDLQQQCLYLNEEIEK 824
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQ--KQKELKSK-EKELKKLNEEKKELEEKVKDLTKKISS 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1750-2306 |
6.90e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 6.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1750 PENEELMLNISSRLQAaVEKLLEAISETNTQLE---------HAKVTQTELMRESFRQKQEATES----LHCLEELRERL 1816
Cdd:PRK03918 217 PELREELEKLEKEVKE-LEELKEEIEELEKELEslegskrklEEKIRELEERIEELKKEIEELEEkvkeLKELKEKAEEY 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1817 QEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEktdiIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAM 1896
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE----LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1897 raeagpVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKV---RGDLQKQVKALEIDVEEQVS---------RFI 1964
Cdd:PRK03918 372 ------EELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKItarIGELKKEIKELKKAIEELKKakgkcpvcgREL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1965 ELEQEKN------AELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEiqKLEHQLKAVPriQPVSEHQAREVE 2038
Cdd:PRK03918 446 TEEHRKElleeytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELE--EKLKKYNLEELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2039 QLTnhlkEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQ-- 2116
Cdd:PRK03918 522 KKA----EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKel 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2117 ---------LQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTtrlqelQQENRLFKDEIEKL 2187
Cdd:PRK03918 598 epfyneyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS------EEEYEELREEYLEL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2188 gfamkesdsvstrdQPMLFGKFAQLiQEKEIEIDRLNEQFIKLQQQLKlttdnkVIEEQKEQIQDLETQIERLMSEREHE 2267
Cdd:PRK03918 672 --------------SRELAGLRAEL-EELEKRREEIKKTLEKLKEELE------EREKAKKELEKLEKALERVEELREKV 730
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 568932676 2268 KKQREEEVEQLTGVVEKLQQEVVS--TEQQREGARTLPEDE 2306
Cdd:PRK03918 731 KKYKALLKERALSKVGEIASEIFEelTEGKYSGVRVKAEEN 771
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
147-748 |
8.93e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 8.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 147 EKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI---KQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQK 223
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENEL-NLLEKEKLNIQKNIdkiKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 224 LQIQFQHLQANETLQNSTLSRTATDLLQA-------KRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIE 296
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLkdeqnkiKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 297 NLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGL-------HEQLTQRNQEIQSLKlelgnsQQNERKc 369
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSesensekQRELEEKQNEIEKLK------KENQSY- 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 370 SEEIKELmrtveELQKRNLKdswLETSAVRRVEQETQRKLSHLQAELDEMyGKQIVQMKQELINQHmSQIEELKSQhKRE 449
Cdd:TIGR04523 383 KQEIKNL-----ESQINDLE---SKIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNN-SEIKDLTNQ-DSV 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 450 MENTLKS-DTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQ 528
Cdd:TIGR04523 452 KELIIKNlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 529 TIAEQENRLSEARKSLSTVED------LKAEIvaaSESRKELE-LKHE-----AEITNYKIKLEMLEKEKNAVLDRMAEs 596
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFelkkenLEKEI---DEKNKEIEeLKQTqkslkKKQEEKQELIDQKEKEKKDLIKEIEE- 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 597 qeaelerlRTQLLFSHEEELSKLKEDLE--VEHRINIEKLKDNLgihyKQQIDGLQNEMNRKMESmqceTDNLITQQNQL 674
Cdd:TIGR04523 608 --------KEKKISSLEKELEKAKKENEklSSIIKNIKSKKNKL----KQEVKQIKETIKEIRNK----WPEIIKKIKES 671
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 675 ILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKgtleqEVQELQLKTEQLEKQLKEKEDDLQEK 748
Cdd:TIGR04523 672 KTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYK-----EIEKELKKLDEFSKELENIIKNFNKK 740
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
282-879 |
9.93e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 9.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 282 EKLRAFEMEKDRKIENlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL---LGGLHEQLTQRNQEIQSLKLE 358
Cdd:PRK03918 182 EKFIKRTENIEELIKE-KEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 359 LGNSQQNERKCSEEIKELMRTVEELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEMygkqivqmkQELINQHMSQ 438
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKE--LKEKAEEYIKLSEFYEEYLDELREIEKRLSRL---------EEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 439 IEELKSQHKRementlksdtnaaiskeqvnlmnaaINELNVRLQETHAQKEELKG------ELGVVLGEKSALQSQSNDL 512
Cdd:PRK03918 330 IKELEEKEER-------------------------LEELKKKLKELEKRLEELEErhelyeEAKAKKEELERLKKRLTGL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 513 -LEEVRFLREQVQKARQTIAEQENRLSEARKSL-STVEDLKAEIVAASESR-------KELELKHEAEITN-YKIKLEML 582
Cdd:PRK03918 385 tPEKLEKELEELEKAKEEIEEEISKITARIGELkKEIKELKKAIEELKKAKgkcpvcgRELTEEHRKELLEeYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 583 EKEKnAVLDRMAESQEAELERLRTQLlfSHEEELSKLKEDLEvehriNIEKLKDNLGIHYKQqidglqnEMNRKMEsmqc 662
Cdd:PRK03918 465 EKEL-KEIEEKERKLRKELRELEKVL--KKESELIKLKELAE-----QLKELEEKLKKYNLE-------ELEKKAE---- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 663 etdnlitqqnqlilensklrdlqeclvnsKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKE 742
Cdd:PRK03918 526 -----------------------------EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELL 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 743 DDLQEKCAQLDAEnniLKEEKRVLEDKLKMY-----SPSEQEERSIAVDPSTSKSADSR-----WQKEVAMLRKETEDLQ 812
Cdd:PRK03918 577 KELEELGFESVEE---LEERLKELEPFYNEYlelkdAEKELEREEKELKKLEEELDKAFeelaeTEKRLEELRKELEELE 653
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 813 QqcLYLNEEIEKQRNtfafaeknfevNYQELQREYTCLLKIRDDLEatqtKQALEYESKLRALEEEL 879
Cdd:PRK03918 654 K--KYSEEEYEELRE-----------EYLELSRELAGLRAELEELE----KRREEIKKTLEKLKEEL 703
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1968-2187 |
1.07e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1968 QEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAvpriqpvsehQAREVEQLTNHLKEK 2047
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA----------LARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2048 TDRCSELLLSKEQLQRDIQERNEEIEKlecRVRELEQ-------ALLASAEPFPKV------------EDQKRSGAVEAD 2108
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAE---LLRALYRlgrqpplALLLSPEDFLDAvrrlqylkylapARREQAEELRAD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 2109 PElslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2187
Cdd:COG4942 159 LA-----ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2969-3306 |
1.13e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2969 REQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQlSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA 3048
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3049 FRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLN 3128
Cdd:PTZ00121 1516 KKAEEAKKADEAK-----KAEEAKKADEAKKAEEKKKAD-------ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3129 ESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpSEDLLK--ELQ 3206
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE----------AEEKKKaeELK 1653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3207 KQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANT--QGQKKMQELQSKVEELQRQLQEKRQQVY 3284
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
330 340
....*....|....*....|..
gi 568932676 3285 KLDLEGKRLQGLMQEFQKQELE 3306
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1919-2483 |
1.15e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1919 EFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEqEKNAELTDLRQQSQALEKQLEKMRKFLDEQ 1998
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1999 aidreherdvfQQEIQKLEHQLKAVPRIQPVSEhQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECR 2078
Cdd:PRK03918 272 -----------KKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2079 VRELEQALlasaepfpkVEDQKRSGAVEADPELSLEVQLQVERdaTDRKQKEITNLE-EQLEQFREELENKNDEVQEllm 2157
Cdd:PRK03918 340 LEELKKKL---------KELEKRLEELEERHELYEEAKAKKEE--LERLKKRLTGLTpEKLEKELEELEKAKEEIEE--- 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2158 qleiQRKESTTRLQELQQENRLFKDEIEKLGFAMKE----SDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQ 2233
Cdd:PRK03918 406 ----EISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2234 LK-----LTTDNKVIEEQK--EQIQDLETQIERLMSErehEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDE 2306
Cdd:PRK03918 482 LRelekvLKKESELIKLKElaEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2307 ESFKHQLDKVTAEKLVLEQQVE-------------------------TTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2361
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEelgfesveeleerlkelepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2362 CASNEELPSlpkesvhmTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCR 2441
Cdd:PRK03918 639 EKRLEELRK--------ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 568932676 2442 EQTETIqEQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQME 2483
Cdd:PRK03918 711 KELEKL-EKALERVEELREKVKKYKALLKERALSKVGEIASE 751
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2933-3252 |
1.50e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2933 EYHTAMDCLQKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDcsMQQKQSLEMQLELSSLRDRAAELQEQLS 3012
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA--ELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3013 SEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARsghhE 3092
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA----L 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3093 GREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKST 3172
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3173 LDKERELYAQLQSREdggqpppaLPSEDLLKELQKQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ 3252
Cdd:COG1196 448 AEEEAELEEEEEALL--------ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2901-3220 |
1.53e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2901 LATFQTELTSLSTRDVDGLLNSLEQRIQEQgieyhtamdclqKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQEL 2980
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEEL------------EAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2981 LDCSMQQKQSLEMQLE-LSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDE 3059
Cdd:COG1196 290 EYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3060 ihflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKm 3139
Cdd:COG1196 370 -------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE- 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3140 lhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppALPSEDLLKELQKQLEEKHSRIVEL 3219
Cdd:COG1196 442 ---EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-----AAARLLLLLEAEADYEGFLEGVKAA 513
|
.
gi 568932676 3220 L 3220
Cdd:COG1196 514 L 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1761-2075 |
3.13e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 3.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1761 SRLQAAVEKLLEAISETNTQLEHakvTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEElnkaesvIDGY 1840
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEE---RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-------IEQL 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1841 SDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRpidAAAGAARGAEF 1920
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---IEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1921 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAI 2000
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2001 D-----------REHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrcsELLLSKEQLQRDIQERN 2069
Cdd:TIGR02168 951 LtleeaealenkIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE---DLTEAKETLEEAIEEID 1027
|
....*.
gi 568932676 2070 EEIEKL 2075
Cdd:TIGR02168 1028 REARER 1033
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1824-2315 |
3.44e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 3.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESdqrrVEEERQLLCRQREAMRAEAGPV 1903
Cdd:TIGR04523 155 EKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK----KIQKNKSLESQISELKKQNNQL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1904 EQRPIDAAAGAARGAEFLQETEKLMKEKLEVQcqaekvrGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQ 1980
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ-------NKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1981 SQA-LEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCselllskE 2059
Cdd:TIGR04523 304 KEQdWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS---QLKKELTNSESENSEKQRELEEKQNEI-------E 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2060 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQ-- 2137
Cdd:TIGR04523 374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE---LLEKEIERLKETIIKNNSEIKDLTNQds 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2138 -LEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESD---SVSTRDQPMLFGKFAQL- 2212
Cdd:TIGR04523 451 vKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEekvKDLTKKISSLKEKIEKLe 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2213 --IQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLE----------TQIERLMSEREHEKKQREEEVEQLTG 2280
Cdd:TIGR04523 531 seKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKqtqkslkkkqEEKQELIDQKEKEKKDLIKEIEEKEK 610
|
490 500 510
....*....|....*....|....*....|....*
gi 568932676 2281 VVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDK 2315
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1938-2466 |
6.77e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 6.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1938 AEKVRGDLQKQVKALEIDV----------EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfLDEQAIDREHERD 2007
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELaeldeeieryEEQREQARETRDEADEVLEEHEERREELETLEAEIED-LRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2008 VFQQEIQKLEHQL----KAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2083
Cdd:PRK02224 276 ELAEEVRDLRERLeeleEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2084 QAllasaepfpkvEDQKRSGAVEadpelsLEVQLQVERDATDRKQKEITNLEEQLEQFREELEN---KNDEVQELLMQLE 2160
Cdd:PRK02224 356 ER-----------AEELREEAAE------LESELEEAREAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2161 IQRKESTTRLQELQQENRLFKDEIEKlGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQfiklqqqlklttdn 2240
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAE-------------- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2241 kvIEEQKEQIQDLETQIERLMSEREHEKkQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEK 2320
Cdd:PRK02224 484 --LEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2321 LVLEQQVETTNQVmthmnnvLKEINFKMDQITQSLCNLNKECASNEELPSLPKEsvhmtvhelgsdnlqpedapAQDVTK 2400
Cdd:PRK02224 561 AEAEEEAEEAREE-------VAELNSKLAELKERIESLERIRTLLAAIADAEDE--------------------IERLRE 613
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 2401 PLEKQTSLTRLQKSPEASRTQEIESLASSV-GAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQ 2466
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1824-2328 |
7.75e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 7.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEvlcmnnrLQELESDQRRVEE------ERQLLCRQREAMR 1897
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE-------IEELEEKVKELKElkekaeEYIKLSEFYEEYL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1898 AEAGPVEQRPIDAAAGAARGAEFLQETE-------KLMKEKLEVQCQAEKVRGDLQK--QVKALEIDVEEQVSRFIELEQ 1968
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEekeerleELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1969 EK-NAELTDLRQQSQALEKQLEKMRkfldeqaiDREHERDVFQQEIQKLEHQLKAVPRIQPVSehqAREVEQltnhlKEK 2047
Cdd:PRK03918 387 EKlEKELEELEKAKEEIEEEISKIT--------ARIGELKKEIKELKKAIEELKKAKGKCPVC---GRELTE-----EHR 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2048 TDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFP--KVEDQKRsgavEADPELSLEVQLQVERDAtd 2125
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkELAEQLK----ELEEKLKKYNLEELEKKA-- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2126 rkqKEITNLEEQLEQFREELENKNDEVQElLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPML 2205
Cdd:PRK03918 525 ---EEYEKLKEKLIKLKGEIKSLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2206 FGKFAQL------IQEKEIEIDRLNEQFIKLQQQLKLTtdNKVIEEQKEQIQDLetqiERLMSEREHEKKqrEEEVEQLT 2279
Cdd:PRK03918 601 YNEYLELkdaekeLEREEKELKKLEEELDKAFEELAET--EKRLEELRKELEEL----EKKYSEEEYEEL--REEYLELS 672
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 568932676 2280 GVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2328
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1849-2334 |
7.81e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.83 E-value: 7.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1849 RQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMR--AEAGPVEQRPIDAAAGAARGAEFLQETEK 1926
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPlaAHIKAVTQIEQQAQRIHTELQSKMRSRAK 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1927 LMKEKLEVQCQAEKVRGD------LQKQVKALEIDVEEQVSRFIELEQEKNAE---------LTDLRQQSQALEKQLEKM 1991
Cdd:TIGR00618 326 LLMKRAAHVKQQSSIEEQrrllqtLHSQEIHIRDAHEVATSIREISCQQHTLTqhihtlqqqKTTLTQKLQSLCKELDIL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1992 RKfLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQ-------LTNHLKEKTDRCSELLLSKEQlqrd 2064
Cdd:TIGR00618 406 QR-EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQceklekiHLQESAQSLKEREQQLQTKEQ---- 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2065 IQERNEEIEKLECRVRELEQALlasAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFRE- 2143
Cdd:TIGR00618 481 IHLQETRKKAVVLARLLELQEE---PCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKq 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2144 --ELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLgfamkesdsvsTRDQPMLFGKFAQLIQEKEIEID 2221
Cdd:TIGR00618 558 raSLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKL-----------SEAEDMLACEQHALLRKLQPEQD 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2222 ----RLNEQFIKLQQQLKLTT-----DNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQevvST 2292
Cdd:TIGR00618 627 lqdvRLHLQQCSQELALKLTAlhalqLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQ---CQ 703
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 568932676 2293 EQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVM 2334
Cdd:TIGR00618 704 TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL 745
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
288-836 |
1.38e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 288 EMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNER 367
Cdd:pfam05483 107 KLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYM 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 368 KCSEEIKELMRTVEELqkrnlkdswletsavrRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQhK 447
Cdd:pfam05483 187 DLNNNIEKMILAFEEL----------------RVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ-I 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 448 REMENTLKSDTNA-AISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVlgeKSALQSQsndlLEEVRFLREQVQKA 526
Cdd:pfam05483 250 TEKENKMKDLTFLlEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI---KMSLQRS----MSTQKALEEDLQIA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 527 RQTI----AEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKE---KNAVLDRMAE---S 596
Cdd:pfam05483 323 TKTIcqltEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMElqkKSSELEEMTKfknN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 597 QEAELERLRT-----QLLFSHEEELSKLKEDLEVEHRINI------EKLKDNLGI----------HYKQQIDGLQNEMNR 655
Cdd:pfam05483 403 KEVELEELKKilaedEKLLDEKKQFEKIAEELKGKEQELIfllqarEKEIHDLEIqltaiktseeHYLKEVEDLKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 656 ---KMESMQCETDNLITQQNQLILENS----KLRDLQECLVNSKSEE--MNLQINELQ-KEIEILKQEEKEKGTLEQEVQ 725
Cdd:pfam05483 483 eklKNIELTAHCDKLLLENKELTQEASdmtlELKKHQEDIINCKKQEerMLKQIENLEeKEMNLRDELESVREEFIQKGD 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 726 ELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLR 805
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
|
570 580 590
....*....|....*....|....*....|.
gi 568932676 806 KETEDLQQQCLYLNEEIEKQRNTFAFAEKNF 836
Cdd:pfam05483 643 LELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1575-2361 |
1.48e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1575 QQMERQREDQEQLQEEIKRLNEQLaqdghddqeveeqtlkdKTLERSPEDAlldrnlsnERYALKKANNRLLKILLEVVK 1654
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQL-----------------KSLERQAEKA--------ERYKELKAELRELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1655 TTSAAEEtigrhvlgiLDRSskgqtassllwRSEADASATTCapEDCARAMDESipsypGTAIATHDSIWSKVTEEGAEL 1734
Cdd:TIGR02168 234 LEELREE---------LEEL-----------QEELKEAEEEL--EELTAELQEL-----EEKLEELRLEVSELEEEIEEL 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1735 SQRlvrsgfagpvidpeneelmLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRE 1814
Cdd:TIGR02168 287 QKE-------------------LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1815 RLQEEsraREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQRE 1894
Cdd:TIGR02168 348 ELKEE---LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1895 AMRAEAGPVEQRPIDAAAGAARgaeflQETEKLMKEKLEVQCQAEKVRGDLQKqvkaleidVEEQVSRFIELEQEKNAEL 1974
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELE-----EELEELQEELERLEEALEELREELEE--------AEQALDAAERELAQLQARL 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1975 TDLRQQSQALEKqLEKMRKFLDEQAIDREHERDVFQQEIQ---KLEHQLKAV--PRIQPVSEHQAREVEQLTNHLKEKTD 2049
Cdd:TIGR02168 492 DSLERLQENLEG-FSEGVKALLKNQSGLSGILGVLSELISvdeGYEAAIEAAlgGRLQAVVVENLNAAKKAIAFLKQNEL 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2050 RCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKV------------------EDQKRSGA----VEA 2107
Cdd:TIGR02168 571 GRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalELAKKLRPgyriVTL 650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2108 DPELSLEVQLQVERDATDR-----KQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKD 2182
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2183 EIEKLGFAMKESDSVSTRDQpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQKEQIQDLETQIERL- 2260
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEaEIEELEAQIEQLKEELKALREALDELr 809
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2261 -----MSEREHEKKQR-----------EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESfkhQLDKVTAEKLVLE 2324
Cdd:TIGR02168 810 aeltlLNEEAANLRERleslerriaatERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES---ELEALLNERASLE 886
|
810 820 830
....*....|....*....|....*....|....*..
gi 568932676 2325 QQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2361
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2059-2346 |
1.54e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2059 EQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAdpELSlevQLQVERDATDRKQKEITNLEEQL 2138
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER--EIA---ELEAELERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2139 EQFREELENKNDEVQELlmQLEIQRKEST-TRLQELQQENRLFKDEIEKLGfamkesdsvSTRDQPMLFGKFAQLIQEKe 2217
Cdd:COG4913 695 EELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLA---------RLELRALLEERFAAALGDA- 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2218 ieidRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2297
Cdd:COG4913 763 ----VERELRENLEER---------IDALRARLNRAEEELERAM--RAFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568932676 2298 GartLPEDEESFKHQLDKVTAEKLV-----LEQQVETTNQVMTHMNNVLKEINF 2346
Cdd:COG4913 828 G---LPEYEERFKELLNENSIEFVAdllskLRRAIREIKERIDPLNDSLKRIPF 878
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1815-2187 |
1.57e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1815 RlqeesraREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQRE 1894
Cdd:TIGR02168 685 K-------IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1895 AMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMkEKLEVQCQAEKVRGD-LQKQVKALEIDVEEQVSRFIELEQEKNA- 1972
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQI-EQLKEELKALREALDeLRAELTLLNEEAANLRERLESLERRIAAt 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1973 --ELTDLRQQSQALEKQLEKMRKFLDEQAIDREH---ERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQltnHLKEK 2047
Cdd:TIGR02168 837 erRLEDLEEQIEELSEDIESLAAEIEELEELIEElesELEALLNERASLEEALALLRSELEELSEELRELES---KRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2048 TDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKvedqkrsgAVEADPElslEVQLQVERDATDRK 2127
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN--------KIEDDEE---EARRRLKRLENKIK 982
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2128 QKEITNLE-----EQLEQFREELENKNDEVQELLMQLE--IQR--KESTTRLQE-LQQENRLFKDEIEKL 2187
Cdd:TIGR02168 983 ELGPVNLAaieeyEELKERYDFLTAQKEDLTEAKETLEeaIEEidREARERFKDtFDQVNENFQRVFPKL 1052
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1824-2361 |
1.62e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNR-------LQELESDQRRVEEERQLLCRQREAM 1896
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKlkknkdkINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1897 RAEAGPVEQrpiDAAAGAARGAEFLQETEKLMKEKLEVQCQAEkvrgDLQKQVKALEIDVEEqvsrFIELEQEKNAELTD 1976
Cdd:TIGR04523 123 EVELNKLEK---QKKENKKNIDKFLTEIKKKEKELEKLNNKYN----DLKKQKEELENELNL----LEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1977 LRQQSQALEKQLEKMRKFLDEQaidreherDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLL 2056
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKN--------KSLESQISELKKQNN---QLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2057 SKEQLQRDIQERNEEIEKLECRVRELE---QALLASAEPFPKVEDQKRSGAVEADPElSLEVQLQVERDATDRKQKEITN 2133
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQKEQDWNKELKSELK-NQEKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2134 LEEQLEQFREELENKNDEVQELLMQLEiqrkESTTRLQELQQENRLFKDEIEKLgfamkesdSVSTRDQPMLFGKFAQLI 2213
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELE----EKQNEIEKLKKENQSYKQEIKNL--------ESQINDLESKIQNQEKLN 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2214 QEKEIEIDRLNEQFIKLQQQLKL-----TTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREE---EVEQLTGVVEKL 2285
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELLEKEIERlketiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrSINKIKQNLEQK 487
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568932676 2286 QQEVVSTEQqregartlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2361
Cdd:TIGR04523 488 QKELKSKEK-----------------ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-615 |
2.32e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 268 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIdELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQ 347
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY-ELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 348 RNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRRVEQETQRKLSHLQAELdemygkqivQ 426
Cdd:TIGR02169 263 LEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELE--------AEIASLERSIAEKERELEDAEERL---------A 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 427 MKQELINQHMSQIEELKSQhkREMENTLKSDTNAAISKEQvnlmnAAINELNVRLQETHAQKEELKGELGVVLGEKSALQ 506
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK-----EELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 507 SQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSL----STVEDLKAEIVAASESRKELelkhEAEITNYKIKLEML 582
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleEEKEDKALEIKKQEWKLEQL----AADLSKYEQELYDL 474
|
330 340 350
....*....|....*....|....*....|...
gi 568932676 583 EKEKNAVLDRMAESQEaELERLRTQLLFSHEEE 615
Cdd:TIGR02169 475 KEEYDRVEKELSKLQR-ELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2923-3224 |
2.37e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2923 LEQRIQEQGIEYHTAMDCLQ--KADRRSLLAEIEDLRAQINGGKMTLER-----EQGTEKSSQELLDCSMQQKQSLEMQL 2995
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEelEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2996 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgTTLKAQHKRLKE--------LEAFRSEVKEKTDEIHFLSDTL 3067
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEeaanlrerLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3068 AREQKNSLELQWALEKEKArsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSE 3147
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEE--------LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 3148 EQGRNLGLQALLESEQVRIQEMKSTLdkeRELYaQLQSREDGGQPPPALPSEDLLKELQKQLEEKHSRI--VELLSETE 3224
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERL---SEEY-SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLAAIEE 994
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1838-2487 |
2.86e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 2.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1838 DGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNrlqelESDQRRVEEERQL--LCRQREAMRAEagpvEQRPIDAAAGAA 1915
Cdd:PTZ00121 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKK-----AEDARKAEEARKAedARKAEEARKAE----DAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1916 RGAEFLQETEKLMKEKLEVQCQAEKVRgdlqkqvKALEIDVEEQVSRFIE---LEQEKNAELTDLRQQSQALE--KQLEK 1990
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVR-------KAEELRKAEDARKAEAarkAEEERKAEEARKAEDAKKAEavKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1991 MRKfLDEQAIDREHER---DVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQE 2067
Cdd:PTZ00121 1235 AKK-DAEEAKKAEEERnneEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2068 --RNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPEL-SLEVQLQVERDATDRKQKEITNLEEQLEQFR-- 2142
Cdd:PTZ00121 1314 akKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKka 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2143 EELENKNDEVQELLMQLEiQRKESTTRLQELQQ--ENRLFKDEIEKLGFAMKESDSVSTRDQPmlfGKFAQLIQEKEIEI 2220
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELK-KAAAAKKKADEAKKkaEEKKKADEAKKKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEA 1469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2221 DRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGAR 2300
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2301 TLPEDEESFKHQLDKVTAEKlvleQQVETTNQVMTHMNNVLKEInfkmdqitqslcnlnkECASNEELPSLPKESVHMTV 2380
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEA----KKAEEDKNMALRKAEEAKKA----------------EEARIEEVMKLYEEEKKMKA 1609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2381 HELGSDnlQPEDAPAQDVTKPLEKQTSLTRLQKSP--EASRTQEIESLASSVGAKDVELTQCREQTETIQEQAQSETDRL 2458
Cdd:PTZ00121 1610 EEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEaeEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
650 660
....*....|....*....|....*....
gi 568932676 2459 QKKLTDLQRSLEKfaAALVSQVQMEAAQE 2487
Cdd:PTZ00121 1688 KKAAEALKKEAEE--AKKAEELKKKEAEE 1714
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2013-2283 |
2.95e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 56.40 E-value: 2.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2013 IQKLEHQLKAV--PRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELeqallasa 2090
Cdd:COG2433 382 LEELIEKELPEeePEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA-------- 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2091 epfpkveDQKRSGAVEADPELSlevqlqverdatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRL 2170
Cdd:COG2433 454 -------RSEERREIRKDREIS-------------RLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPV 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2171 QELQQenrLFKDEIEKL--GFAMKESDSVSTRDqPMLFGK-FAQLIQEKEIE-IDRLNEQFIKLQQQLKlttDNK--VIE 2244
Cdd:COG2433 514 KVVEK---FTKEAIRRLeeEYGLKEGDVVYLRD-ASGAGRsTAELLAEAGPRaVIVPGELSEAADEVLF---EEGipVLP 586
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568932676 2245 EQKEQIQ-----------DLETQIERLmsEREHEKKQREEEVEQLTGVVE 2283
Cdd:COG2433 587 AEDVTIQevddlavvdeeELEAAIEDW--EERAEERRREKKAEMLERLIS 634
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
146-639 |
3.29e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 146 VEKELAEKQHDIEELTQELEEMRASFGT------------EGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVE 213
Cdd:PRK03918 198 KEKELEEVLREINEISSELPELREELEKlekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 214 FLELTEQSQKLQiqfqhlqaNETLQNSTLSRTATDLLQAKRQIftqqqqlqdyQKKEEDLQAQISFLQEKLrafemekdr 293
Cdd:PRK03918 278 LEEKVKELKELK--------EKAEEYIKLSEFYEEYLDELREI----------EKRLSRLEEEINGIEERI--------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 294 kienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH--EQLTQR--NQEIQSLKLELGNSQQNERKC 369
Cdd:PRK03918 331 -------KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEelERLKKRltGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 370 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRKLS-HLQAELDEMYGKQIVQMKQELInQHMSQIEELKSQh 446
Cdd:PRK03918 404 EEEISKITARIGELKKEikELKKAIEELKKAKGKCPVCGRELTeEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKE- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 447 KREMENTLKSDTNAAISKEQVNLMNAAINELNV----RLQETHAQKEELKGELGVVLGEKSALQS---QSNDLLEEVRFL 519
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKeleKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 520 REQVQKARQTIAEQENRLSEarKSLSTVEDLKAEI----------VAASESRKELELKHE-------------AEITNYK 576
Cdd:PRK03918 562 EKKLDELEEELAELLKELEE--LGFESVEELEERLkelepfyneyLELKDAEKELEREEKelkkleeeldkafEELAETE 639
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568932676 577 IKLEMLEKEKNAVLDRMAESQEAELERLRTQL---LFSHEEELSKLKEDLEvEHRINIEKLKDNLG 639
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1938-2330 |
3.46e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1938 AEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLE 2017
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2018 HQLKAVPRI-QPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRV-----------RELEQA 2085
Cdd:COG4913 373 LPLPASAEEfAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniparllalrDALAEA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2086 LLASAEPFP--------KVEDQKRSGAVEA-----------DPE-----------LSLEVQLQVERDATDRKQKEITNLE 2135
Cdd:COG4913 453 LGLDEAELPfvgelievRPEEERWRGAIERvlggfaltllvPPEhyaaalrwvnrLHLRGRLVYERVRTGLPDPERPRLD 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2136 EQ-----LE----QFREELEN---------KNDEVQELL-----MQLEIQRKESTTR----------------------L 2170
Cdd:COG4913 533 PDslagkLDfkphPFRAWLEAelgrrfdyvCVDSPEELRrhpraITRAGQVKGNGTRhekddrrrirsryvlgfdnrakL 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2171 QELQQENRLFKDEIEKLGFAMKESDSV--STRDQPMLFGKFAQLiQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQK 2247
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAEldALQERREALQRLAEY-SWDEIDVASAEREIAELEAELeRLDASSDDLAALE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2248 EQIQDLETQIERLMSERE---HEKKQREEEVEQLTGVVEKLQQEVVSTEQ--------------QREGARTLPED-EESF 2309
Cdd:COG4913 692 EQLEELEAELEELEEELDelkGEIGRLEKELEQAEEELDELQDRLEAAEDlarlelralleerfAAALGDAVERElRENL 771
|
490 500
....*....|....*....|.
gi 568932676 2310 KHQLDKVTAEKLVLEQQVETT 2330
Cdd:COG4913 772 EERIDALRARLNRAEEELERA 792
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1821-2260 |
3.73e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1821 RAREQLAEELNKAESVIDGYSDEktlfERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQL--LCRQREAMRA 1898
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1899 EAGPVEQRPidaaagaARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLR 1978
Cdd:COG4717 140 ELAELPERL-------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1979 QQSQALEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSK 2058
Cdd:COG4717 213 EELEEAQEELEELEE--ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLF 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2059 EQLQRDIQERNEEIEKLEC--RVRELEQALLAS-AEPFPKVEDQKRSGAVEADPELSlEVQLQVERDATDRKQKEITNLE 2135
Cdd:COG4717 291 LLLAREKASLGKEAEELQAlpALEELEEEELEElLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2136 EQLEQFREELENKNDEvqELLMQLEIQRkesttRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQpmLFGKFAQL--- 2212
Cdd:COG4717 370 QEIAALLAEAGVEDEE--ELRAALEQAE-----EYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELeee 440
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568932676 2213 IQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERL 2260
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELREL 488
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
150-964 |
3.75e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 150 LAEKQHDIEELTQELEEMRASFG---TEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 226
Cdd:pfam01576 45 LQEQLQAETELCAEAEEMRARLAarkQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 227 QFQHLQA------NETL----QNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDL----QAQISFLQEKLRA-----F 287
Cdd:pfam01576 125 EKVTTEAkikkleEDILlledQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLknkhEAMISDLEERLKKeekgrQ 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 288 EMEKDRKIENLNAKEIQEK----QALIDELNTRVVEEEKktvELKNKVTTADElLGGLHEQLTQRNQEIQSLKLELGNSQ 363
Cdd:pfam01576 205 ELEKAKRKLEGESTDLQEQiaelQAQIAELRAQLAKKEE---ELQAALARLEE-ETAQKNNALKKIRELEAQISELQEDL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 364 QNERKCSEEIKELMRTV-EELQ--KRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMkQELINQHMSQIE 440
Cdd:pfam01576 281 ESERAARNKAEKQRRDLgEELEalKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQL-QEMRQKHTQALE 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 441 ELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLR 520
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 521 EQVQKARQTIAEQENRLSEARKSLSTVED--LKAEIVAASESRKELELKHeaeitnykiKLEMLEKEKNAVLDRMAESQE 598
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESqlQDTQELLQEETRQKLNLST---------RLRQLEDERNSLQEQLEEEEE 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 599 A------ELERLRTQL-------------LFSHEEELSKLKEDLE---------VEHRINIEKLKDNLgihyKQQIDGL- 649
Cdd:pfam01576 511 AkrnverQLSTLQAQLsdmkkkleedagtLEALEEGKKRLQRELEaltqqleekAAAYDKLEKTKNRL----QQELDDLl 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 650 -----QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS----------EEMNLQINELQKEIEILKQE- 713
Cdd:pfam01576 587 vdldhQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKEtralslaralEEALEAKEELERTNKQLRAEm 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 714 -----------------EKEKGTLEQEVQELQLKTEQLEKQLKEKED-------DLQEKCAQ----LDAENNILKEEKRV 765
Cdd:pfam01576 667 edlvsskddvgknvhelERSKRALEQQVEEMKTQLEELEDELQATEDaklrlevNMQALKAQferdLQARDEQGEEKRRQ 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 766 LEDKLKMYSPSEQEERSIAVDPSTSKsadsrwqKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeKNFEVNYQELQR 845
Cdd:pfam01576 747 LVKQVRELEAELEDERKQRAQAVAAK-------KKLELDLKELEAQIDAANKGREEAVKQL-------KKLQAQMKDLQR 812
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 846 EYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAApkgkssgifpSETLEIGEVVEKDttELMEKL------ 919
Cdd:pfam01576 813 ELEEARASRDEILA----QSKESEKKLKNLEAELLQLQEDLAA----------SERARRQAQQERD--ELADEIasgasg 876
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 568932676 920 -EVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 964
Cdd:pfam01576 877 kSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQL 922
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1546-2188 |
5.13e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 5.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1546 EQLEDMRQELVRQYEE-HQQAtEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQDghdDQEVEEQTLKDKTLERspED 1624
Cdd:COG1196 189 ERLEDILGELERQLEPlERQA-EKAERYRELKEELKELEAELLLLKLRELEAELEEL---EAELEELEAELEELEA--EL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1625 ALLDRNLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARA 1704
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1705 MDEsipsypgtaIATHDSIWSKVTEEGAELSQRLVRSgfagpvidpenEELMLNISSRLQAAVEKLLEA---ISETNTQL 1781
Cdd:COG1196 343 EEE---------LEEAEEELEEAEAELAEAEEALLEA-----------EAELAEAEEELEELAEELLEAlraAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1782 EHAKVTQTELMRESFRQKQEATEslhcleeLRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHL 1861
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEE-------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1862 EQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEFLQETEklmkeklevqcqAEKV 1941
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA------------LEAA 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1942 RGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLK 2021
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2022 AVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkvEDQKR 2101
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL----------AEEEL 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2102 SGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFK 2181
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*..
gi 568932676 2182 DEIEKLG 2188
Cdd:COG1196 774 REIEALG 780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1539-2294 |
5.62e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 5.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1539 SRQLILNEQLEDMRQELVRQyEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQlaqdghddqevEEQTLKDKTL 1618
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-----------EQLRVKEKIG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1619 ERSPEDALLDRNLSNERYALKKANNRLLKILLEVVKTTSAAEEtigrhvlgiLDRSSKGQTASSLLWRSEADASATTcap 1698
Cdd:TIGR02169 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE---------LEREIEEERKRRDKLTEEYAELKEE--- 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1699 EDCARAMDESIPSYPGTAIATHDSI---WSKVTEEGAELSQRLVRSGFAGPVIDPENEELMLNISS------RLQAAVEK 1769
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYrekLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGieakinELEEEKED 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1770 LLEAISETNTQLEhakvtQTELMRESFRQKQEATESlhcleELRERLQEESRAREQLAE---ELNKAESVIDGYSDEKTL 1846
Cdd:TIGR02169 446 KALEIKKQEWKLE-----QLAADLSKYEQELYDLKE-----EYDRVEKELSKLQRELAEaeaQARASEERVRGGRAVEEV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1847 FERQIQ----EKTDIIEHLEQEVLCMN----NRLQELESDQRRVEEERQLLCRQREAMRAEAGP-----VEQRPIDAAAG 1913
Cdd:TIGR02169 516 LKASIQgvhgTVAQLGSVGERYATAIEvaagNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPlnkmrDERRDLSILSE 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1914 AARGA------EFLQETEKLMK----EKLEVQCQAEKVRGDLQKQVKALEIDVEEQ----------VSRFIELEQEKNAE 1973
Cdd:TIGR02169 596 DGVIGfavdlvEFDPKYEPAFKyvfgDTLVVEDIEAARRLMGKYRMVTLEGELFEKsgamtggsraPRGGILFSRSEPAE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1974 LTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQKLEHQLKAVP-RIQPVSEHQAREVEQLTNhLKEKTDRCS 2052
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRI----ENRLDELSQELSDASRKIGEIEkEIEQLEQEEEKLKERLEE-LEEDLSSLE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2053 ELLLSKEQ----LQRDIQERNEEIEKLECRVRELEQALlaSAEPFPKVEDQKRsgaveadpELSLEVQLQVER-DATDRK 2127
Cdd:TIGR02169 751 QEIENVKSelkeLEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELS--------KLEEEVSRIEARlREIEQK 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2128 QKEITNLEEQLEQFREELENKNDEvqellmqLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmlfg 2207
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRID-------LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES----------- 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2208 kfaqliQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREH--EKKQREEEVEQLTGVVEKL 2285
Cdd:TIGR02169 883 ------RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEieDPKGEDEEIPEEELSLEDV 956
|
....*....
gi 568932676 2286 QQEVVSTEQ 2294
Cdd:TIGR02169 957 QAELQRVEE 965
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
146-923 |
6.39e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 6.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 146 VEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 225
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 226 IqfqhlqanetlqnstlSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAqisfLQEKLRAfemEKDRKIENLNAKEiQE 305
Cdd:PTZ00121 1168 E----------------ARKAEDAKKAEAARKAEEVRKAEELRKAEDARK----AEAARKA---EEERKAEEARKAE-DA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 306 KQAlidELNTRVVEEEKKTVELK--NKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK-------EL 376
Cdd:PTZ00121 1224 KKA---EAVKKAEEAKKDAEEAKkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadeakkaEE 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 377 MRTVEELQKRnlKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGK-QIVQMKQELINQHMSQIEELKSQHKREMENTLK 455
Cdd:PTZ00121 1301 KKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 456 SDTNAAISKEQVNlmnaAINELNVRLQETHAQKEELKgelgvvlgEKSALQSQSndllEEVRFLREQVQKARQTI--AEQ 533
Cdd:PTZ00121 1379 KADAAKKKAEEKK----KADEAKKKAEEDKKKADELK--------KAAAAKKKA----DEAKKKAEEKKKADEAKkkAEE 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 534 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEitnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshE 613
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----A 1506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 614 EELSKLKEDLEVEHRINIEKLKdnlgihykqqidglQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS 693
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 694 EEMNlqiNELQKEIEILKQEEKEK--GTLEQEVQELQLKTEQLEKQlkEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:PTZ00121 1573 EEDK---NMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 772 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFE--VNYQELQREytc 849
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEekKKAEELKKA--- 1724
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 850 llKIRDDLEATQTKQALEYESK----LRALEEELLSKRGNPAAPKGKSSGIFPSETLEIGE-VVEKDTTELMEKLEVTK 923
Cdd:PTZ00121 1725 --EEENKIKAEEAKKEAEEDKKkaeeAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2991-3283 |
6.78e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2991 LEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLARE 3070
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3071 QKNSLELQWALEKEKARsghhegreKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQG 3150
Cdd:TIGR02168 753 SKELTELEAEIEELEER--------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3151 RNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKykldS 3230
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---------------IEELEELIEELESELEALLNERAS----L 885
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568932676 3231 LQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQV 3283
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
130-748 |
1.19e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 130 SSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDd 209
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERD- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 210 tmveflELTEQSQKLQIQFQHLQANetlqnstLSRTATDLLQAKRQiftqqqqlqdyQKKEEDLQAQISFLQEKLRafem 289
Cdd:pfam15921 367 ------QFSQESGNLDDQLQKLLAD-------LHKREKELSLEKEQ-----------NKRLWDRDTGNSITIDHLR---- 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 290 ekdRKIENLNAkEIQEKQALIDELNTRV---VEEEKKTVELKN----KVTTADELLGGLHEQLTQRNQEIQSLKLELGNS 362
Cdd:pfam15921 419 ---RELDDRNM-EVQRLEALLKAMKSECqgqMERQMAAIQGKNesleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 363 QQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVR-RVEQETQrKLSHLQAELDEMYGKQI------VQMKQ-----E 430
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIEATNA--------EITKLRsRVDLKLQ-ELQHLKNEGDHLRNVQTecealkLQMAEkdkviE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 431 LINQHMSQIEELKSQHKRementlksdTNAAISKEQVNLmNAAINELNVRLQETHAQKEELKGELgvvlgekSALQSQSN 510
Cdd:pfam15921 566 ILRQQIENMTQLVGQHGR---------TAGAMQVEKAQL-EKEINDRRLELQEFKILKDKKDAKI-------RELEARVS 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 511 DL-LEEVRFLR---EQVQKARQTIAEQENRLSEARKSLSTVEDLKAEivaasesrkelelkHEAEITNYKIKLEMLEKEK 586
Cdd:pfam15921 629 DLeLEKVKLVNagsERLRAVKDIKQERDQLLNEVKTSRNELNSLSED--------------YEVLKRNFRNKSEEMETTT 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 587 NAvLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEklkdnlgihyKQQIDGLQNEMNRKMESMQcetdN 666
Cdd:pfam15921 695 NK-LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK----------RGQIDALQSKIQFLEEAMT----N 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 667 LITQQNQLILENSKLRDLQECLVNSKseemnlqiNELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQ 746
Cdd:pfam15921 760 ANKEKHFLKEEKNKLSQELSTVATEK--------NKMAGELEVLRSQERR---LKEKVANMEVALDKASLQFAECQDIIQ 828
|
..
gi 568932676 747 EK 748
Cdd:pfam15921 829 RQ 830
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
300-755 |
1.53e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 300 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLT---QRNQEIQSLKLELGNSQQNERKC------- 369
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLRETIAETerereel 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 370 SEEIKELMRTVEELQKRNlkDSWLETSAVRRVEQET-QRKLSHLQAELDEMygkqivqmkQELINQHMSQIEELKSQHKR 448
Cdd:PRK02224 278 AEEVRDLRERLEELEEER--DDLLAEAGLDDADAEAvEARREELEDRDEEL---------RDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 449 EMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGEL----------GVVLGEksaLQSQSNDLLEEVRF 518
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIeelrerfgdaPVDLGN---AEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 519 LREQVQKARQTIAEQENRLSEARKSLST---------VEDlkAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAV 589
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEG--SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 590 LDrmAESQEAELERLR------TQLLFSHE----------EELSKLKEDLEVE-----------------HRINIEKLKD 636
Cdd:PRK02224 502 ED--LVEAEDRIERLEerredlEELIAERRetieekreraEELRERAAELEAEaeekreaaaeaeeeaeeAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 637 NLGiHYKQQIDGLQN---------EMNRKMESMQCETDNLITQQNQ----LILENSKLRDLQECL--------------- 688
Cdd:PRK02224 580 KLA-ELKERIESLERirtllaaiaDAEDEIERLREKREALAELNDErrerLAEKRERKRELEAEFdearieearedkera 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932676 689 ------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAE 755
Cdd:PRK02224 659 eeyleqVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALE-ALYDEAEELESMYGDLRAE 730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1858-2275 |
1.66e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1858 IEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAmraeagpveqrpidaaagaargaefLQETEKLMKEKLEVQcQ 1937
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREA-------------------------LQRLAEYSWDEIDVA-S 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1938 AEKVRGDLQKQVKALEidveeqvsrfieleqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDR---EHERDVFQQEIQ 2014
Cdd:COG4913 666 AEREIAELEAELERLD---------------ASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2015 KLEHQLKAVPRIQPVSEHqarevEQLTNHLKEKTDRCSELLLSkEQLQRDIQERNEEIEKLEcrvRELEQALLASAEPFP 2094
Cdd:COG4913 731 ELQDRLEAAEDLARLELR-----ALLEERFAAALGDAVERELR-ENLEERIDALRARLNRAE---EELERAMRAFNREWP 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2095 kvedqkrSGAVEADPELSlevqlqvERDATDRKQKEITN--LEEQLEQFREEL-ENKNDEVQELLMQLEiqrkesttrlq 2171
Cdd:COG4913 802 -------AETADLDADLE-------SLPEYLALLDRLEEdgLPEYEERFKELLnENSIEFVADLLSKLR----------- 856
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2172 elqQENRLFKDEIEKLGFAMKESDsvstrdqpmlFGkfaqliQEKEIEID---RLNEQFIKLQQQLK------LTTDNKV 2242
Cdd:COG4913 857 ---RAIREIKERIDPLNDSLKRIP----------FG------PGRYLRLEarpRPDPEVREFRQELRavtsgaSLFDEEL 917
|
410 420 430
....*....|....*....|....*....|...
gi 568932676 2243 IEEQKEQIQDLetqIERLMSEREHEKKQREEEV 2275
Cdd:COG4913 918 SEARFAALKRL---IERLRSEEEESDRRWRARV 947
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1921-2148 |
1.69e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1921 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKFLDE 1997
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1998 Q--AIDREHERD-----VFQQEIQKLEHQLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNE 2070
Cdd:COG4942 109 LlrALYRLGRQPplallLSPEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 2071 EIEKLEcRVRELEQALLAsaepfpkvedqkrsgaveadpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENK 2148
Cdd:COG4942 186 ERAALE-ALKAERQKLLA-----------------------RLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2987-3280 |
1.74e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2987 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKlelgttlkaqhkrlKELEAFRSEVKEKTDEIHFLSDT 3066
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ--------------KELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3067 LAREQKNSLELQWALEKEKARSGHHEGRE---KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHdA 3143
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELaelEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV-A 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3144 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEEKHSRIVELLSET 3223
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-------------LKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 3224 EkykldslQTRQQMEKDRQvhqkTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKR 3280
Cdd:TIGR02168 457 E-------RLEEALEELRE----ELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
534-880 |
1.78e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 534 ENRLSEARKSLSTVEDLKAEIvaasesRKELE-LKHEAEITN--YKIKLEMLEKEKNAVLDRMaESQEAELERLRTQLlf 610
Cdd:COG1196 178 ERKLEATEENLERLEDILGEL------ERQLEpLERQAEKAEryRELKEELKELEAELLLLKL-RELEAELEELEAEL-- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 611 sheEELSKLKEDLEVEHRiNIEKLKDNLgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvn 690
Cdd:COG1196 249 ---EELEAELEELEAELA-ELEAELEEL----RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE---- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 691 skseemnlQINELQKEIEILKQEekekgtLEQEVQELQLKTEQLEKQ---LKEKEDDLQEKCAQLDAENNILKEEKRVLE 767
Cdd:COG1196 317 --------RLEELEEELAELEEE------LEELEEELEELEEELEEAeeeLEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 768 DKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREY 847
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340 350
....*....|....*....|....*....|...
gi 568932676 848 TCLLKIRDDLEATQTKQALEYESKLRALEEELL 880
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
236-879 |
2.02e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.03 E-value: 2.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALID---E 312
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAEEMRARLAARKQELEEilhE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 313 LNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnlkdsw 392
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE------ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 393 letsavRRVEQETQRKLSHLQAELDEMygkqiVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNA 472
Cdd:pfam01576 154 ------RKLLEERISEFTSNLAEEEEK-----AKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 473 AINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE---QENRLSEARKSLS-TVE 548
Cdd:pfam01576 223 QIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraARNKAEKQRRDLGeELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 549 DLKAEI---VAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL-------------LFSH 612
Cdd:pfam01576 303 ALKTELedtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLeqakrnkanlekaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 613 EEELSKLKEDL--------EVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLrdl 684
Cdd:pfam01576 383 ESENAELQAELrtlqqakqDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL--- 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 685 qeclvnskSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKR 764
Cdd:pfam01576 460 --------SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 765 VLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 844
Cdd:pfam01576 532 KLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLA 611
|
650 660 670
....*....|....*....|....*....|....*...
gi 568932676 845 REYTCLLKI---RDDLEATQTKQALEYESKLRALEEEL 879
Cdd:pfam01576 612 EEKAISARYaeeRDRAEAEAREKETRALSLARALEEAL 649
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1772-2083 |
2.29e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.59 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1772 EAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAesvidgYSDEKTLFERQI 1851
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMA------MERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1852 QEKTDIIEHLEQEVLCMN-NRLQELEsdqrRVEEERQllcRQREAMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKE 1930
Cdd:pfam17380 356 EERKRELERIRQEEIAMEiSRMRELE----RLQMERQ---QKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1931 KLEVQcqaekvrgdlQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQ 2010
Cdd:pfam17380 429 QEEAR----------QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILE 498
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 2011 QEIQK-----LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2083
Cdd:pfam17380 499 KELEErkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1763-2318 |
2.57e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1763 LQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQ----KQEATESLHCLEELRERLQEESRAREQLAEELN----KAE 1834
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKiqhlEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTflleESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1835 SVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQL-------LCRQREAMRAEAGPVEQRP 1907
Cdd:pfam05483 268 DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIatkticqLTEEKEAQMEELNKAKAAH 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1908 IDAAAGAARGAEFLQETEKLMKEKLEV-QCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN--AELTDLRQQSQAL 1984
Cdd:pfam05483 348 SFVVTEFEATTCSLEELLRTEQQRLEKnEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKilAEDEKLLDEKKQF 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1985 EKQLEKMRKFLDE-QAIDREHERDVFQQEIQ------KLEHQLKAVPRIQPVSEHQAREVEQLTNHL-------KEKTDR 2050
Cdd:pfam05483 428 EKIAEELKGKEQElIFLLQAREKEIHDLEIQltaiktSEEHYLKEVEDLKTELEKEKLKNIELTAHCdklllenKELTQE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2051 CSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPEL-SLEVQLQVERDATDRKQK 2129
Cdd:pfam05483 508 ASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEK 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2130 EITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQ-QENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGK 2208
Cdd:pfam05483 588 QMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNaYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2209 FAQLIQEKEIEIDRLN-EQFIKLQQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHE---KKQREEEVEQLTGVVE- 2283
Cdd:pfam05483 668 ISEEKLLEEVEKAKAIaDEAVKLQKEIDKRCQHK-IAEMVALMEKHKHQYDKIIEERDSElglYKNKEQEQSSAKAALEi 746
|
570 580 590
....*....|....*....|....*....|....*...
gi 568932676 2284 ---KLQQEVVSTEQQREGARtlpEDEESFKHQLDKVTA 2318
Cdd:pfam05483 747 elsNIKAELLSLKKQLEIEK---EEKEKLKMEAKENTA 781
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2989-3278 |
2.67e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2989 QSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLA 3068
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3069 rEQKNSLElqwALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNtqlnllLEQQKQLLNESQQKIESQKMLHDAQLSEE 3148
Cdd:TIGR02169 755 -NVKSELK---ELEARIEELEEDLHKLEEALNDLEARLSHSRIPE------IQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3149 QGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKYKL 3228
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK---------------KEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568932676 3229 DslqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQE 3278
Cdd:TIGR02169 890 E----RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2102-2299 |
5.37e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 5.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2102 SGAVEADPelslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTT---RLQELQQENR 2178
Cdd:COG3883 9 PTPAFADP------QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKlqaEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2179 LFKDEIEKLGFAMKESDSVSTRDQPMLFGK-FAQLIQEKEIeIDRLNEQFIKLQQQLKltTDNKVIEEQKEQIQDLETQI 2257
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSEsFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568932676 2258 ERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA 2299
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2996-3310 |
6.37e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2996 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIhflsDTLAREQKNSL 3075
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL----KKAAAAKKKAD 1421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3076 EL-QWALEKEKARSGHHEGREKEELEDLKFSLEDQKR-----------RNTQLNLLLEQQKQLLNESQQKIESQKMLHDA 3143
Cdd:PTZ00121 1422 EAkKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKaeeakkkaeeaKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3144 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERElyAQLQSREDGGQPPPALPSEDLLK-ELQKQLEEKHS-------- 3214
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKaeedknma 1579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3215 -RIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRL 3293
Cdd:PTZ00121 1580 lRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
330
....*....|....*..
gi 568932676 3294 QGLMQEFQKQELEPEEK 3310
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKK 1676
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1775-2340 |
6.43e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 6.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1775 SETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEK 1854
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1855 TDIIEHLEQEVLCMNNRLQELESDQRRVEEERQllcrqreamRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEV 1934
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK---------KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1935 QCQAEKVRGDLQKQVKALEIDVEEQVSRFIElEQEKNAEL---TDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVfqQ 2011
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAE-EAKKADEAkkkAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA--D 1513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2012 EIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLEC--RVRELEQALLAS 2089
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEAR 1593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2090 AEPFPKV-EDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRK--ES 2166
Cdd:PTZ00121 1594 IEEVMKLyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKaeED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2167 TTRLQELQQENRLFKDEIEKLGFAMKESDSVST--RDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIE 2244
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2245 EQKEQIQDLETQIERLMSEREHE-----KKQREEEVEQLTGVVEKLQQEVVST-----EQQREGARTLPEDEESFKHQLD 2314
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEkeaviEEELDEEDEKRRMEVDKKIKDIFDNfaniiEGGKEGNLVINDSKEMEDSAIK 1833
|
570 580
....*....|....*....|....*.
gi 568932676 2315 KVTAEKLVLEQQVETTNQVMTHMNNV 2340
Cdd:PTZ00121 1834 EVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
136-354 |
7.35e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 7.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 136 AQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFL 215
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 216 ELT----EQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEK 291
Cdd:COG4942 94 ELRaeleAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568932676 292 DRKIENLN---------AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQS 354
Cdd:COG4942 174 AELEALLAeleeeraalEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
483-782 |
8.97e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 8.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 483 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEV---RFLREQVQKARQTiaEQENRLSEARKSLSTVEDLKAEIVAASE 559
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMeqeRLRQEKEEKAREV--ERRRKLEEAEKARQAEMDRQAAIYAEQE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 560 sRKELELKHEAE---ITNYKIKLEMLEKEKNAV-LDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLK 635
Cdd:pfam17380 341 -RMAMERERELErirQEERKRELERIRQEEIAMeISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 636 DNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEK 715
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 716 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILK----EEKRVLEDKLKMYSpseqEERS 782
Cdd:pfam17380 500 ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKqqemEERRRIQEQMRKAT----EERS 566
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1843-2328 |
9.24e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 9.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1843 EKTLFERQIQEKTDIIEHLEQEvLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEfLQ 1922
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQ-HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH-AK 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1923 ETEKLMKEKLEVQCQAEKVRGDLQKQVKAL----------EIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMR 1992
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITCTAQCEKLEKIHlqesaqslkeREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1993 KFLDEQAIDR-------------EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKE 2059
Cdd:TIGR00618 511 IHPNPARQDIdnpgpltrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2060 QLQRDIQERNEEIEKLECRVRELEQALL-------------------------------ASAEPFPKVEDQKRSGAVEAD 2108
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQHALLrklqpeqdlqdvrlhlqqcsqelalkltalhALQLTLTQERVREHALSIRVL 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2109 PELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLG 2188
Cdd:TIGR00618 671 PKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2189 FAMKESDSVSTRDQpmlfgkfAQLIQEKEIEIDRLNEQfiklqQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHEK 2268
Cdd:TIGR00618 750 HQARTVLKARTEAH-------FNNNEEVTAALQTGAEL-----SHLAAEIQFF-NRLREEDTHLLKTLEAEIGQEIPSDE 816
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2269 KQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2328
Cdd:TIGR00618 817 DILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2126-2472 |
1.00e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2126 RKQKEITnlEEQLEQFREELENKNDEVQELLMQLE-IQRK-ESTTRLQELQQENR-----LFKDEIEKLGFAMKESDSVS 2198
Cdd:TIGR02168 171 KERRKET--ERKLERTRENLDRLEDILNELERQLKsLERQaEKAERYKELKAELRelelaLLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2199 TRDQPMLFgKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQL 2278
Cdd:TIGR02168 249 KEAEEELE-ELTAELQELEEKLEELRLEVSELEE--EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2279 TGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNvlkeinfKMDQITQSLCNL 2358
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------KVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2359 NKECASNEELPSLPKESVHMTVHELGSDNLQPEDAPAQDVTKPL-EKQTSLTRLQKSPEASRTQEIeslassvgakdvEL 2437
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeELEEELEELQEELERLEEALE------------EL 466
|
330 340 350
....*....|....*....|....*....|....*
gi 568932676 2438 TQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKF 2472
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
300-540 |
1.01e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 300 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRT 379
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 380 VEELQKRnlkdswLETSAVRRVEQETQRKLSHL-------QAELDEMYGKQIVQMKQELINQHMSQIEELKSQhkremen 452
Cdd:COG4942 99 LEAQKEE------LAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARREQAEELRADLAELAAL------- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 453 tlksdtNAAISKEQVNLmNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE 532
Cdd:COG4942 166 ------RAELEAERAEL-EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 568932676 533 QENRLSEA 540
Cdd:COG4942 239 AAERTPAA 246
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2912-3310 |
1.15e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2912 STRDVDGLLNSLEQRIQEQGIEYHTAMDCLQKADR-----RSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLdcSMQ 2986
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREeleklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI--REL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2987 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVA------ELKSELAQAKLELGT---TLKAQHKRLKELEAFRSEVKEKT 3057
Cdd:PRK03918 265 EERIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRleeEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3058 DEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQ 3137
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3138 KM-------------LHDAQLSEEQGRNLGLQALLESEQVRiQEMKSTLDKERELYAQLQSREDGGQPPPALPSEDLLKE 3204
Cdd:PRK03918 425 KKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3205 LQKQLEEKHSRIV--ELLSETEKY-----KLDSLQTRQQMEKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQ 3277
Cdd:PRK03918 504 QLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLAEL---EKKLDELEEELAELLKELE 580
|
410 420 430
....*....|....*....|....*....|....*....
gi 568932676 3278 EKR-QQVYKLDLEGKRLQGLMQEF-----QKQELEPEEK 3310
Cdd:PRK03918 581 ELGfESVEELEERLKELEPFYNEYlelkdAEKELEREEK 619
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
302-963 |
1.27e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.59 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 302 EIQEKQALIDELNTRVveeeKKTVELK----NKVTTADELLG----GLHEQLTQRNQEIQSLKLELgnSQQNERKCSEEI 373
Cdd:TIGR01612 604 ELKEKIKNISDKNEYI----KKAIDLKkiieNNNAYIDELAKispyQVPEHLKNKDKIYSTIKSEL--SKIYEDDIDALY 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 374 KELMRTVEElqkrnlkdswletSAVRRVEQETqrKLSHLQAELDEMYGKqIVQMKQELINQHMSQIEELKSQhkrement 453
Cdd:TIGR01612 678 NELSSIVKE-------------NAIDNTEDKA--KLDDLKSKIDKEYDK-IQNMETATVELHLSNIENKKNE-------- 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 454 lKSDTNAAISKEQVNLMNaaiNELNVRLQETHAQKEEL----------KGELGVVLGEKSALQSQSNDLL-------EEV 516
Cdd:TIGR01612 734 -LLDIIVEIKKHIHGEIN---KDLNKILEDFKNKEKELsnkindyakeKDELNKYKSKISEIKNHYNDQInidnikdEDA 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 517 RFLREQVQKARQTIAEQENrlsEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKL-EMLEKEKNAVLDRMAE 595
Cdd:TIGR01612 810 KQNYDKSKEYIKTISIKED---EIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFaELTNKIKAEISDDKLN 886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 596 SQEAEL---ERLRTQLLFSHEEELSKLKEDLEVEHRINI-EKLKDNL-GIHYKQQIdgLQNEMNRKMESMQceTDNLITQ 670
Cdd:TIGR01612 887 DYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LKEILNKNIDTIK--ESNLIEK 962
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 671 QNQLILENS---KLRDLQECLVNSKSEEMNLQINELQKEIEILKQ--------------EEKEKGT--LEQEVQELQLKT 731
Cdd:TIGR01612 963 SYKDKFDNTlidKINELDKAFKDASLNDYEAKNNELIKYFNDLKAnlgknkenmlyhqfDEKEKATndIEQKIEDANKNI 1042
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 732 EQLEKQLKEKEDDLQEKCAQLDAEN------NILKEEK------RVLEDKLKMYSPSEqeersiavdpsTSKSADSRWQK 799
Cdd:TIGR01612 1043 PNIEIAIHTSIYNIIDEIEKEIGKNiellnkEILEEAEinitnfNEIKEKLKHYNFDD-----------FGKEENIKYAD 1111
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 800 EVAMLRKETEDLQQQclylneeIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEyesklraleeel 879
Cdd:TIGR01612 1112 EINKIKDDIKNLDQK-------IDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIE------------ 1172
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 880 lSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTElmekLEVTKREKLELSEKVSGL-----SEQLKQTHCTINSLSA 952
Cdd:TIGR01612 1173 -KKIENIVTKIDKKKNIYDEIKKLLNEIaeIEKDKTS----LEEVKGINLSYGKNLGKLflekiDEEKKKSEHMIKAMEA 1247
|
730
....*....|.
gi 568932676 953 EVRALKQEKEQ 963
Cdd:TIGR01612 1248 YIEDLDEIKEK 1258
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
464-660 |
1.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 464 KEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSqsndlLEEVRFLREQVQKARQTIAEQENRLSEARKS 543
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 544 LSTVEDLKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEknavLDRMAESQEAELERLRTQLLFSHEEELSKLKEDL 623
Cdd:COG4913 684 SDDLAALEEQLEELEAELEEL----EEELDELKGEIGRLEKE----LEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190
....*....|....*....|....*....|....*..
gi 568932676 624 EvehRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESM 660
Cdd:COG4913 756 A---AALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
486-814 |
1.95e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 486 AQKEELKGELGVV---LGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRlsEARKSLSTVEDLKAEIVAASESRK 562
Cdd:TIGR02169 170 RKKEKALEELEEVeenIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 563 ELElkheAEITNYKIKLEMLEKEKNAVldrmaesqEAELERLRTQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGIhY 642
Cdd:TIGR02169 248 SLE----EELEKLTEEISELEKRLEEI--------EQLLEELNKKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE-K 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 643 KQQIDGLQNEMnRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKE-------IEILKQEEK 715
Cdd:TIGR02169 314 ERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 716 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADS 795
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330
....*....|....*....
gi 568932676 796 RWQKEVAMLRKETEDLQQQ 814
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE 491
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
489-641 |
2.37e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 489 EELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR-------QTIAEQENRLsearkslstvEDLKAEIVAASESR 561
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEaeveeleAELEEKDERI----------ERLERELSEARSEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 562 KElELKHEAEITNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLFSHEEELSKLK--EDLEVEHrinIEKLKDNLG 639
Cdd:COG2433 458 RR-EIRKDREISRLDREIERLERELEE-ERERIEELKRKLERLKELWKLEHSGELVPVKvvEKFTKEA---IRRLEEEYG 532
|
..
gi 568932676 640 IH 641
Cdd:COG2433 533 LK 534
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1824-2368 |
2.47e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDG--YSDEKTLFERQIQE---KTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMra 1898
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKaiSNDDPEEIEKKIENivtKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNL-- 1223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1899 eaGPVEQRPIDAAAGAARGAefLQETEKLMKEKLEVQCQAEKVRG------DLQKQVKALEIDVEEQVSRFIeLEQEKNA 1972
Cdd:TIGR01612 1224 --GKLFLEKIDEEKKKSEHM--IKAMEAYIEDLDEIKEKSPEIENemgiemDIKAEMETFNISHDDDKDHHI-ISKKHDE 1298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1973 ELTDLRQQSQAL------EKQLEKMRKFLDEQAID-REHERDVFQ--QEIQKLEHQLK--AVPRIQPVSEHQAREVEQLT 2041
Cdd:TIGR01612 1299 NISDIREKSLKIiedfseESDINDIKKELQKNLLDaQKHNSDINLylNEIANIYNILKlnKIKKIIDEVKEYTKEIEENN 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2042 NHLKEKTDRcSELLLSKEQLQRDIQERNEEIEKL-------EC--RVRELEQALLA----------SAEPFPK------- 2095
Cdd:TIGR01612 1379 KNIKDELDK-SEKLIKKIKDDINLEECKSKIESTlddkdidECikKIKELKNHILSeesnidtyfkNADENNEnvlllfk 1457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2096 ------------VEDQKRSGAVEADPELSlEVQLQVER-----DATDRKQKEITNLEEQLEQFREEL------------- 2145
Cdd:TIGR01612 1458 niemadnksqhiLKIKKDNATNDHDFNIN-ELKEHIDKskgckDEADKNAKAIEKNKELFEQYKKDVtellnkysalaik 1536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2146 ----ENKND------EVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPmLFGKFAQLIQ- 2214
Cdd:TIGR01612 1537 nkfaKTKKDseiiikEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLEN-FENKFLKISDi 1615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2215 --------------EKEIEIDRLNEQFIKLQQQLK-----------LTTDNKVIEEQKEQIQDLETQIERLMSEREHEKK 2269
Cdd:TIGR01612 1616 kkkindclketesiEKKISSFSIDSQDTELKENGDnlnslqeflesLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2270 QREeeveqlTGVVEKLQQEVVSTEQQREGARTLPEDE-ESFKHQLDKVTAEKLVLEQQVETTNqvmTHMNNVLKEINFKM 2348
Cdd:TIGR01612 1696 NYE------IGIIEKIKEIAIANKEEIESIKELIEPTiENLISSFNTNDLEGIDPNEKLEEYN---TEIGDIYEEFIELY 1766
|
650 660
....*....|....*....|
gi 568932676 2349 DQITQSLCNLNKECASNEEL 2368
Cdd:TIGR01612 1767 NIIAGCLETVSKEPITYDEI 1786
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
2986-3310 |
2.47e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2986 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLkaqhKRLKELEAFRSEVKEKTDEIhflsd 3065
Cdd:pfam01576 199 EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL----ARLEEETAQKNNALKKIREL----- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3066 tlareQKNSLELQWALEKEKARSGHHEGREK---EELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHD 3142
Cdd:pfam01576 270 -----EAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3143 AQLSE-EQGRNLGLQALLES-EQVR-----IQEMKSTLDKER-ELYAQLQSREDGGQpppalPSEDLLKELQKQLEEKHS 3214
Cdd:pfam01576 345 AQLQEmRQKHTQALEELTEQlEQAKrnkanLEKAKQALESENaELQAELRTLQQAKQ-----DSEHKRKKLEGQLQELQA 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3215 RivelLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRLQ 3294
Cdd:pfam01576 420 R----LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLE 495
|
330
....*....|....*.
gi 568932676 3295 GLMQEFQKQELEPEEK 3310
Cdd:pfam01576 496 DERNSLQEQLEEEEEA 511
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
699-878 |
2.78e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 699 QINELQKEIE----ILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDL---QEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:COG4942 28 ELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELaalEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 772 -----MYSPSEQEERSIAVDPSTSKSADSRW----------QKEVAMLRKETEDLQQqclyLNEEIEKQRNTFAFAEKNF 836
Cdd:COG4942 108 ellraLYRLGRQPPLALLLSPEDFLDAVRRLqylkylaparREQAEELRADLAELAA----LRAELEAERAELEALLAEL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568932676 837 EVNYQELQREytclLKIRDDLEATQTKQALEYESKLRALEEE 878
Cdd:COG4942 184 EEERAALEAL----KAERQKLLARLEKELAELAAELAELQQE 221
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1753-2476 |
3.02e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1753 EELMLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNK 1832
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1833 -----------AESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLC---MNNRLQELESDQ-------RRVEEERQLLCR 1891
Cdd:pfam15921 350 qlvlanselteARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeQNKRLWDRDTGNsitidhlRRELDDRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1892 QREA----MRAEA-GPVEQRpidaAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIEL 1966
Cdd:pfam15921 430 RLEAllkaMKSECqGQMERQ----MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE-SSERTVSDLTAS 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1967 EQEK-------NAELTDLRQQSQALEKQLEKMRKfldeqaiDREHERDVfQQEIQKLEHQLKAVPRIQPVSEHQareVEQ 2039
Cdd:pfam15921 505 LQEKeraieatNAEITKLRSRVDLKLQELQHLKN-------EGDHLRNV-QTECEALKLQMAEKDKVIEILRQQ---IEN 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2040 LTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKL-------ECRVRELEQALlasaepfPKVEDQKRSGAVEADPELS 2112
Cdd:pfam15921 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFkilkdkkDAKIRELEARV-------SDLELEKVKLVNAGSERLR 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2113 LEVQLQVERDATDRKQK----EITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDEIEKLG 2188
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDG 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2189 FAMKesdsvstrdqpmlfgkfaqliqekeieidrlneqfIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEK 2268
Cdd:pfam15921 724 HAMK-----------------------------------VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2269 KQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVT-----AEKLVLEQQVETTNQVMTHMNNVlKE 2343
Cdd:pfam15921 769 EEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASlqfaeCQDIIQRQEQESVRLKLQHTLDV-KE 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2344 IN----FKMDQITQSLCNLNKECASNEELPSLPKESVHMTVHELGSDNLQPEdaPAQDVTKPLEKQTSLTRLQKSPEASR 2419
Cdd:pfam15921 848 LQgpgyTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKED--PTRDLKQLLQELRSVINEEPTVQLSK 925
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 2420 TQEiESLASSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKFAAAL 2476
Cdd:pfam15921 926 AED-KGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSREPVLL 981
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
147-554 |
3.58e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 147 EKELAEKQHDIEELTQELEEMRASFGT--------EGLKQLQEFEAAIKQRDGIITQLTANLQQARREKD---DTMVEFL 215
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEElreeleklEKLLQLLPLYQELEALEAELAELPERLEELEERLEelrELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 216 ELTEQSQKLQIQFQHLQANETLQN-STLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRK 294
Cdd:COG4717 167 ELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 295 ienlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK 374
Cdd:COG4717 247 ----EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 375 ELMRTV---EELQKRNLKDSWLETSAVRRV-----EQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMsQIEELKSqh 446
Cdd:COG4717 323 ELLAALglpPDLSPEELLELLDRIEELQELlreaeELEEELQLEELEQEIAALLAEAGVEDEEELRAALE-QAEEYQE-- 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 447 KREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRF--LREQVQ 524
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELE 479
|
410 420 430
....*....|....*....|....*....|
gi 568932676 525 KARQTIAEQENRLSEARKSLSTVEDLKAEI 554
Cdd:COG4717 480 ELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
515-774 |
3.63e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 515 EVRFLREQVQKARqtIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEItnykikLEMLEKEKNAVLDRMa 594
Cdd:PRK05771 32 HIEDLKEELSNER--LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL------IKDVEEELEKIEKEI- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 595 ESQEAELERLRTQLlfsheEELSKLKEDLEVEHRINIEkLKDNLGIHYKQQIDGLQNEmnRKMESMQCETDNLitqqNQL 674
Cdd:PRK05771 103 KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVFVGTVPE--DKLEELKLESDVE----NVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 675 ILENSKLRDLqeCLVNSKSEEMNLQINELqKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDA 754
Cdd:PRK05771 171 YISTDKGYVY--VVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|
gi 568932676 755 ENNILKEEKRVLEDKLKMYS 774
Cdd:PRK05771 248 ELLALYEYLEIELERAEALS 267
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1825-2383 |
3.66e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1825 QLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRV-EEERQLLCRQREAMRAEAGP- 1902
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIlELDQELRKAERELSKAEKNSl 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1903 VEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKvrgdlQKQVKALEIDVEEQVSRFIELEQEKNAELTDLR---Q 1979
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT-----RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfP 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1980 QSQALEKQLEKMRKfldEQAIDREHERDVfQQEIQKLEHQlkavpriqpvSEHQAREVEQLTNHLKEKTDRCSElLLSKE 2059
Cdd:TIGR00606 571 NKKQLEDWLHSKSK---EINQTRDRLAKL-NKELASLEQN----------KNHINNELESKEEQLSSYEDKLFD-VCGSQ 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2060 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLE 2139
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2140 QFREELENKNDEVQEL--LMQLEIQRKESttRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmlfgKFAQLIQEKE 2217
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLapGRQSIIDLKEK--EIPELRNKLQKVNRDIQRLKNDIEEQET-----------LLGTIMPEEE 782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2218 IEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLEtqIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2297
Cdd:TIGR00606 783 SAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD--LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2298 GARTLPEDEESFKHQLDKVTAEKLVLEQQVETtnqVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELPSLPKESVH 2377
Cdd:TIGR00606 861 HLKSKTNELKSEKLQIGTNLQRRQQFEEQLVE---LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK 937
|
....*.
gi 568932676 2378 MTVHEL 2383
Cdd:TIGR00606 938 KAQDKV 943
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
241-880 |
3.66e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 241 TLSRTATDLLQAKRQIfTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKienlnakEIQEKQALIDELNTRVVEE 320
Cdd:COG4913 236 DLERAHEALEDAREQI-ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR-------RLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 321 EKKTVELKNKVTTADELLGGLHEQLTQR-NQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVR 399
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALG--------LPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 400 RVEQETQRKLSHLQAELDEMYGKQivqmkQELINQHMSQIEELKSQH---KREMENTLKSDTNaaISKEQVNLMNAAINE 476
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELrelEAEIASLERRKSN--IPARLLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 477 LNVRlqethaqKEELK--GELGVVLGEKS--------ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 546
Cdd:COG4913 453 LGLD-------EAELPfvGELIEVRPEEErwrgaierVLGGFALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 547 VEDLKAEivAASESRKeLELKhEAEITNYkiklemLEKEKNAVLDRM-AESQEaELERLRTQL----LFSHEEEL-SKLK 620
Cdd:COG4913 526 PERPRLD--PDSLAGK-LDFK-PHPFRAW------LEAELGRRFDYVcVDSPE-ELRRHPRAItragQVKGNGTRhEKDD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 621 EDLEVEHRI----NIEKLKdnlgiHYKQQIDGLQNEMNrkmesmqcETDNLITQQNQLILENSKLRDLQECLVNSKSEEM 696
Cdd:COG4913 595 RRRIRSRYVlgfdNRAKLA-----ALEAELAELEEELA--------EAEERLEALEAELDALQERREALQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 697 NL-----QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLkekeDDLQEKCAQLDAENNILKEEKRVLEDKLk 771
Cdd:COG4913 662 DVasaerEIAELEAELERLDASSDDLAALEEQLEELEAELEELEEEL----DELKGEIGRLEKELEQAEEELDELQDRL- 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 772 myspseqEERSIAVDPSTSKSADSRWQKevAMLRKETEDLQQQclyLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLL 851
Cdd:COG4913 737 -------EAAEDLARLELRALLEERFAA--ALGDAVERELREN---LEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
650 660 670
....*....|....*....|....*....|
gi 568932676 852 K-IRDDLEATQtkqalEYESKLRALEEELL 880
Cdd:COG4913 805 AdLDADLESLP-----EYLALLDRLEEDGL 829
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
556-755 |
3.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 556 AASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEvEHRINIEKLK 635
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 636 DNLGIH---YKQQIDGLQ-----------------NEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEcLVNSKSEE 695
Cdd:COG4942 97 AELEAQkeeLAELLRALYrlgrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-ELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 696 MNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAE 755
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
553-885 |
4.03e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 553 EIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQ----EAELERLRTQLLFSHEEELSKLKEDLEVE-- 626
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIidleELKLQELKLKEQAKKALEYYQLKEKLELEee 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 627 ---------HRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQcETDNLITQQNQLILENSKLRDLQECLVNSKSEEMN 697
Cdd:pfam02463 225 yllyldylkLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 698 LQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQ------EKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREaeeeeeEELEKLQEKLEQLEEELLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 772 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREyTCLL 851
Cdd:pfam02463 384 ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL-KLLK 462
|
330 340 350
....*....|....*....|....*....|....
gi 568932676 852 KIRDDLEATQTKQALEYESKLRALEEELLSKRGN 885
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
643-768 |
4.32e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 48.86 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 643 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSKLRDLQECLVNSKSEEMNLQinELQKEIEILKQEE----KEK- 717
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELL---NSIKPKLRDRKDALEEELRQLK--QLEDELEDCDPTEldraKEKl 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568932676 718 GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLED 768
Cdd:smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1957-2187 |
4.34e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1957 EEQVSRFIELEQEKNAE-LTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKL-EHQLKAVPRIQPVSEHQA 2034
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELiKDVEEELEKIEKEIKELE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2035 REVEQLTNHLKEKTDRCSEL------------LLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEP-------FPK 2095
Cdd:PRK05771 107 EEISELENEIKELEQEIERLepwgnfdldlslLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKgyvyvvvVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2096 VEDQKRSGAVEADPELSlEVQLQVERDATDR---KQKEITNLEEQLEQFREELENKNDEVQELLMQ----LEIQRKESTT 2168
Cdd:PRK05771 187 KELSDEVEEELKKLGFE-RLELEEEGTPSELireIKEELEEIEKERESLLEELKELAKKYLEELLAlyeyLEIELERAEA 265
|
250 260
....*....|....*....|....*.
gi 568932676 2169 RLQELqQENRLF-------KDEIEKL 2187
Cdd:PRK05771 266 LSKFL-KTDKTFaiegwvpEDRVKKL 290
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1942-2186 |
4.34e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.90 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1942 RGDLQKQVKALEIDvEEQVSRFIELEQEKNAELTDLRQQSQALEKQ---LEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2018
Cdd:PLN02939 99 RASMQRDEAIAAID-NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNillLNQARLQALEDLEKILTEKEALQGKINILEM 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2019 QL-KAVPRIQPVSEHQAR------EVEQLTNHLKEK--TDRCSELLLSKE---------QLQRDIQERNEEI-------- 2072
Cdd:PLN02939 178 RLsETDARIKLAAQEKIHveileeQLEKLRNELLIRgaTEGLCVHSLSKEldvlkeenmLLKDDIQFLKAELievaetee 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2073 -----EK----LECRVRELEQALLASAEPFPKVEDQKrsgaVEADPELSLEVQLQVERdATDRKQKEITNLEEQleqfrE 2143
Cdd:PLN02939 258 rvfklEKerslLDASLRELESKFIVAQEDVSKLSPLQ----YDCWWEKVENLQDLLDR-ATNQVEKAALVLDQN-----Q 327
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568932676 2144 ELENKNDEVQELLMQLEIQrKESTTRLQELQQENRLFKDEIEK 2186
Cdd:PLN02939 328 DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQA 369
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
502-740 |
4.36e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 502 KSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVeDLKAEIVAASESRKELelkhEAEITNYKIKLEM 581
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV-DLSEEAKLLLQQLSEL----ESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 582 LEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEhrinIEKLKDNlgiH-----YKQQIDGLQNEMNRK 656
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL----SARYTPN---HpdviaLRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 657 MESMqcetdnLITQQNQLILENSKLRDLQEclvnskseemnlQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEK 736
Cdd:COG3206 311 AQRI------LASLEAELEALQAREASLQA------------QLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
....
gi 568932676 737 QLKE 740
Cdd:COG3206 373 RLEE 376
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2058-2320 |
4.68e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 4.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2058 KEQLQRDIQERNEEIEKLECRVRELEQAL------LASAEPFPKVEDQKR--SGAVEADPELSLEVQLQverdatdRKQK 2129
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLerlrreREKAERYQALLKEKReyEGYELLKEKEALERQKE-------AIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2130 EITNLEEQLEQFREELENKNDEVQEllmqLEIQRKESTTRLQEL-QQENRLFKDEIEKLgfamkESDSVSTRDQpmlfgk 2208
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEE----IEQLLEELNKKIKDLgEEEQLRVKEKIGEL-----EAEIASLERS------ 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2209 faqlIQEKEIEIDRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMSEREhekkQREEEVEQLTGVVEKLQQE 2288
Cdd:TIGR02169 310 ----IAEKERELEDAEERLAKLEAE---------IDKLLAEIEELEREIEEERKRRD----KLTEEYAELKEELEDLRAE 372
|
250 260 270
....*....|....*....|....*....|..
gi 568932676 2289 VvstEQQREGARTLPEDEESFKHQLDKVTAEK 2320
Cdd:TIGR02169 373 L---EEVDKEFAETRDELKDYREKLEKLKREI 401
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1824-2030 |
5.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 5.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESD----QRRVEEERQLLCRQREAM--R 1897
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaelRAELEAQKEELAELLRALyrL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1898 AEAGPVE-----QRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQvsrfieleQEKNA 1972
Cdd:COG4942 117 GRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL--------EEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 1973 ELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVS 2030
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
598-884 |
6.09e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 6.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 598 EAELERLRTQLlfSHEEELSKLKEDLEvehriniEKLKDNLGIHYKQQIDGLQ------NEMNRKMESMQCETDNLITQQ 671
Cdd:TIGR02168 199 ERQLKSLERQA--EKAERYKELKAELR-------ELELALLVLRLEELREELEelqeelKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 672 NQLILENSKLRDLQEcLVNSKSEEMNLQINELQKEIEILKQE----EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 747
Cdd:TIGR02168 270 EELRLEVSELEEEIE-ELQKELYALANEISRLEQQKQILRERlanlERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 748 KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRN 827
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 828 TFAFAEKN-FEVNYQELQREYTCLLKIRDDLEA---TQTKQALEYESKLRALEEELLSKRG 884
Cdd:TIGR02168 429 KLEEAELKeLQAELEELEEELEELQEELERLEEaleELREELEEAEQALDAAERELAQLQA 489
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
514-1080 |
6.20e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 6.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 514 EEVRFLRE--QVQKARQtiAEQENRLSEARKSlstVEDLKAEIVA-ASESRKELELKHEAEITNYKIKLEMLEKEKNAVL 590
Cdd:PTZ00121 1191 EELRKAEDarKAEAARK--AEEERKAEEARKA---EDAKKAEAVKkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 591 DRMAESQEAELERLRTQLlfSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLIT 669
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADEL--KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 670 QQNQLILENSKLRDLQEClVNSKSEEMNLQINELQKEIEILKQ--EEKEKG-TLEQEVQELQLKTEQLEK--QLKEKEDD 744
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEA-AEEKAEAAEKKKEEAKKKADAAKKkaEEKKKAdEAKKKAEEDKKKADELKKaaAAKKKADE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 745 LQEKCAQLDAENNILK---------EEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEvamLRKETEDLQQQC 815
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE---AKKKAEEAKKKA 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 816 --LYLNEEIEKQRNTFAFAE---KNFEVNYQELQREYTCLLKIRDDLEATQTKQALEY---------ESKLRALEEELLS 881
Cdd:PTZ00121 1500 deAKKAAEAKKKADEAKKAEeakKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekkkaEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 882 KRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRalkQEK 961
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK---KAE 1656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 962 EQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEE-------SKPMIEDKIPFKESG 1034
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkaeelKKAEEENKIKAEEAK 1736
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 568932676 1035 REQlllPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEA 1080
Cdd:PTZ00121 1737 KEA---EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1944-2176 |
6.60e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1944 DLQKQVKALE------IDVEEQVSRFIELEqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDReherdvFQQEIQKLE 2017
Cdd:COG4913 229 ALVEHFDDLErahealEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQRRLEL------LEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2018 HQLKAVpriqpvsEHQAREVEQLTNHLKEKTDRCSELLLS-----KEQLQRDIQERNEEIEKLECRVRELEQALLAsaep 2092
Cdd:COG4913 302 AELARL-------EAELERLEARLDALREELDELEAQIRGnggdrLEQLEREIERLERELEERERRRARLEALLAA---- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2093 fpkvedqkrsgaveadpelsleVQLQVERDAtdrkqKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQE 2172
Cdd:COG4913 371 ----------------------LGLPLPASA-----EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
....
gi 568932676 2173 LQQE 2176
Cdd:COG4913 424 LEAE 427
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2984-3311 |
6.63e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 6.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2984 SMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgttlkAQHKRLKELEAFRSEVKEKTDEIHFL 3063
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-----ERRRKLEEAEKARQAEMDRQAAIYAE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3064 SDTLAREQKNSLElqwALEKEKARSGHHEGREKE---------ELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKI 3134
Cdd:pfam17380 339 QERMAMERERELE---RIRQEERKRELERIRQEEiameisrmrELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3135 ESQKM-LHDAQLSEEQGRNLGLQaLLESEQVRiqEMKSTLDKERELYAQLQS-REDGGQPPPALPSEDLLKELQKQLEEK 3212
Cdd:pfam17380 416 QQQKVeMEQIRAEQEEARQREVR-RLEEERAR--EMERVRLEEQERQQQVERlRQQEEERKRKKLELEKEKRDRKRAEEQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3213 HSRIVEL-LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ-----EANTQGQKKMQElQSKVEELQRQLQEKRQQVYKL 3286
Cdd:pfam17380 493 RRKILEKeLEERKQAMIEEERKRKLLEKEMEERQKAIYEEErrreaEEERRKQQEMEE-RRRIQEQMRKATEERSRLEAM 571
|
330 340
....*....|....*....|....*.
gi 568932676 3287 DLEGKRLQGLMQ-EFQKQELEPEEKP 3311
Cdd:pfam17380 572 EREREMMRQIVEsEKARAEYEATTPI 597
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2116-2328 |
7.68e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 7.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2116 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEK----LGFAM 2191
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAqkeeLAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2192 KESDSVSTRDQPMLFGKFAQLiqekeieidrlnEQFIKLQQQLKlttdnKVIEEQKEQIQDLETQIERLMSEREHEKKQR 2271
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDF------------LDAVRRLQYLK-----YLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 2272 EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2328
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1971-2374 |
7.94e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 7.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1971 NAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVE-QLTNHLKEKTD 2049
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVELNKLEKQKKEN----KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEnELNLLEKEKLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2050 RCSELLLSKEQLQRD------IQERNEEIEKLECRVRELEQAllasaepFPKVEDQKRSgaveadpelsLEVQLQVERDA 2123
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLelllsnLKKKIQKNKSLESQISELKKQ-------NNQLKDNIEK----------KQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2124 TDRKQKEITNLEEQLEQFREELENKNDEVQE---LLMQLEIQRKESTTRLQELQQE-----NRLFKDEIEKlgfamKESD 2195
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKN-----QEKK 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2196 SVSTRDQpmlfgkfaqlIQEKEIEIDRLNEQFIKLQQQLK-LTTDNkviEEQKEQIQDLETQIERLMSEREHEK------ 2268
Cdd:TIGR04523 323 LEEIQNQ----------ISQNNKIISQLNEQISQLKKELTnSESEN---SEKQRELEEKQNEIEKLKKENQSYKqeiknl 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2269 -----------KQREEEVEQLTGVVEKLQQEVVSTEQQREgarTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHM 2337
Cdd:TIGR04523 390 esqindleskiQNQEKLNQQKDEQIKKLQQEKELLEKEIE---RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
410 420 430
....*....|....*....|....*....|....*...
gi 568932676 2338 NNVLKEINFKMDQITQSLCNLNKECASNE-ELPSLPKE 2374
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEkELKKLNEE 504
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1937-2160 |
8.02e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1937 QAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNaeLTDLRQQSQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKL 2016
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSE----LESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2017 EHQLKAVPRIQPvSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEpfpkv 2096
Cdd:COG3206 246 RAQLGSGPDALP-ELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLE----- 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 2097 edqkrsgaVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLE 2160
Cdd:COG3206 320 --------AELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
294-885 |
8.13e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 8.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 294 KIENLNAKEIQEkqalideLNTRVVEEEKKTVELKNKVTTADELLG---GLHEQLTQRNQEIQSLKLELGNSQQNERKCS 370
Cdd:TIGR01612 1059 EIEKEIGKNIEL-------LNKEILEEAEINITNFNEIKEKLKHYNfddFGKEENIKYADEINKIKDDIKNLDQKIDHHI 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 371 EEIKELMRTVE------ELQKRNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQhMSQIEELKS 444
Cdd:TIGR01612 1132 KALEEIKKKSEnyideiKAQINDLEDV-ADKAISNDDPEEIEKKIENIVTKIDKK--KNIYDEIKKLLNE-IAEIEKDKT 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 445 QHKR---------EMENTL---KSDTNAAISKEQVNLMNAAINELNvrlqETHAQKEELKGELGVVLGEKSALQ--SQSN 510
Cdd:TIGR01612 1208 SLEEvkginlsygKNLGKLfleKIDEEKKKSEHMIKAMEAYIEDLD----EIKEKSPEIENEMGIEMDIKAEMEtfNISH 1283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 511 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVA-ASESRkelelKHEAEITNYKIKLE------MLE 583
Cdd:TIGR01612 1284 DDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnLLDAQ-----KHNSDINLYLNEIAniynilKLN 1358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 584 KEKNaVLDRMAESQEaELERLRTQL---LFSHEEELSKLKEDLEVEH-RINIEKLKDNLGIH--------YKQQIDGLQN 651
Cdd:TIGR01612 1359 KIKK-IIDEVKEYTK-EIEENNKNIkdeLDKSEKLIKKIKDDINLEEcKSKIESTLDDKDIDecikkikeLKNHILSEES 1436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 652 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEI---------------------EIL 710
Cdd:TIGR01612 1437 NIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIdkskgckdeadknakaieknkELF 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 711 KQEEKEKGTLEQEVQELQLK---------TEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEer 781
Cdd:TIGR01612 1517 EQYKKDVTELLNKYSALAIKnkfaktkkdSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKA-- 1594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 782 siAVDPSTSKSADSRWQKEVAMLRKETEDlqqqCLYLNEEIEKQRNTFAFAEKNFEV-----NYQELQREYTCLLKIRDD 856
Cdd:TIGR01612 1595 --AIDIQLSLENFENKFLKISDIKKKIND----CLKETESIEKKISSFSIDSQDTELkengdNLNSLQEFLESLKDQKKN 1668
|
650 660
....*....|....*....|....*....
gi 568932676 857 LEaTQTKQALEYESKLRALEEELLSKRGN 885
Cdd:TIGR01612 1669 IE-DKKKELDELDSEIEKIEIDVDQHKKN 1696
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
343-563 |
8.16e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 8.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 343 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnLKDSWLETSAVRRVEQETQRKLSHLQAELDE---M 419
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAqkeE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 420 YGKQIVQMkqelinQHMSQIEELK----SQHKREMENTLK--SDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKG 493
Cdd:COG4942 106 LAELLRAL------YRLGRQPPLAlllsPEDFLDAVRRLQylKYLAPAR-REQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 494 ELgvvlgekSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKE 563
Cdd:COG4942 179 LL-------AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3042-3310 |
8.37e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 8.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3042 RLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEdqkrrntqlnllle 3121
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-------------- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3122 qqkqllnESQQKIESQKmlhdaqlseeqgrnlglqALLESEQVRIQEMKSTLDKERELYAQLQSREDGGQPPpalpseDL 3201
Cdd:TIGR02169 748 -------SLEQEIENVK------------------SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP------EI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3202 LKELQKqLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3281
Cdd:TIGR02169 797 QAELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
250 260
....*....|....*....|....*....
gi 568932676 3282 QVYKLDLEGKRLQGLMQEFQKQELEPEEK 3310
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERK 904
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1921-2329 |
9.23e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 9.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1921 LQETEKLMKEKlevqcqaEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAI 2000
Cdd:TIGR00606 711 LKSTESELKKK-------EKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2001 DREHERDVfqQEIQKLEHQLKAVPR--IQPVSEHQA----REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEK 2074
Cdd:TIGR00606 784 AKVCLTDV--TIMERFQMELKDVERkiAQQAAKLQGsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2075 LECRVRELEQALLASAEPFpkvedQKRSGAVEADPELSLEVQlqverdATDRKQKEITNLEEQLEQFREELENKNDEVqe 2154
Cdd:TIGR00606 862 LKSKTNELKSEKLQIGTNL-----QRRQQFEEQLVELSTEVQ------SLIREIKDAKEQDSPLETFLEKDQQEKEEL-- 928
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2155 llmqleIQRKESTTRLQelQQENRLFKDEIEKLGFAMKESDSVSTRdqpmlfGKFAQLIQeKEIEIDRLNEQFIKLQQQL 2234
Cdd:TIGR00606 929 ------ISSKETSNKKA--QDKVNDIKEKVKNIHGYMKDIENKIQD------GKDDYLKQ-KETELNTVNAQLEECEKHQ 993
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2235 K-----LTTDNKVIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR--EGARTLPEDEE 2307
Cdd:TIGR00606 994 EkinedMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKleENIDLIKRNHV 1071
|
410 420
....*....|....*....|..
gi 568932676 2308 SFKHQLDKVTAEKLVLEQQVET 2329
Cdd:TIGR00606 1072 LALGRQKGYEKEIKHFKKELRE 1093
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1957-2321 |
1.06e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1957 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKLEHQLKAVpriqpvsEHQARE 2036
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPELREELEKL-------EKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2037 VEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaveadpelsLEVQ 2116
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-----------LSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2117 LQVERDATDRKQKEITNLEEQLEQFRE---ELENKNDEVQEllmqLEIQRKESTTRLQELQQENRLFKDEIEKlgfaMKE 2193
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEE----LKKKLKELEKRLEELEERHELYEEAKAK----KEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2194 SDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDL---------------ETQIE 2258
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA--RIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRK 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 2259 RLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA------RTLPEDEESFKHQLDKVTAEKL 2321
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklKELAEQLKELEEKLKKYNLEEL 520
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-955 |
1.16e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 268 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEK-------QALIDELNTRVVEEEKKTVELKNKVTTADELLGG 340
Cdd:TIGR00606 279 KQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKerelvdcQRELEKLNKERRLLNQEKTELLVEQGRLQLQADR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 341 LHEQLTQRNQEIQSLKLELGNSQQNERKCSE-EIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEM 419
Cdd:TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 420 ygKQIVQMKQELINQHMSQIeelksQHKREMENTLKSDTNAAISKEQvnlmnaainelNVRLQETHAQKEELKGELGVVL 499
Cdd:TIGR00606 439 --GRTIELKKEILEKKQEEL-----KFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTETLK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 500 GEKSALQSQSNDLLEEVRFLREQVqkarqtiaEQENRLSEARKSLSTVEDLKA---EIVAASESRKELELKHEAEITNYK 576
Cdd:TIGR00606 501 KEVKSLQNEKADLDRKLRKLDQEM--------EQLNHHTTTRTQMEMLTKDKMdkdEQIRKIKSRHSDELTSLLGYFPNK 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 577 IKLE----MLEKEKNAVLDRMAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EVEHRINIEKLKDNLGIHY 642
Cdd:TIGR00606 573 KQLEdwlhSKSKEINQTRDRLAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 643 KQQ--IDGLQNEMNRKMESMQ------CETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEIL---- 710
Cdd:TIGR00606 653 KQRamLAGATAVYSQFITQLTdenqscCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlgla 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 711 KQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKM---YSPSEQEERSIAVDP 787
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMerfQMELKDVERKIAQQA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 788 STSKSADSrwQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRddlEATQTKQALE 867
Cdd:TIGR00606 813 AKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG---TNLQRRQQFE 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 868 YESKLRALEEELLSKrgnpaAPKGKSSGIFPSETLeigevVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTI 947
Cdd:TIGR00606 888 EQLVELSTEVQSLIR-----EIKDAKEQDSPLETF-----LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957
|
....*...
gi 568932676 948 NSLSAEVR 955
Cdd:TIGR00606 958 KDIENKIQ 965
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
670-781 |
1.16e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 670 QQNQLILENSKLRdlqeclVNSKSEEMNLQINElqkEIEILKQE-EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEK 748
Cdd:PRK12704 38 EEAKRILEEAKKE------AEAIKKEALLEAKE---EIHKLRNEfEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|...
gi 568932676 749 CAQLDAENNILKEEKRVLEDKLKMYSPSEQEER 781
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
397-974 |
1.27e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 397 AVRRVEQETQRKLSHLQAELDEMYGKQIVqmkqELINQHMSQIEELKSQHKREMENTLKS----DTNAAI------SKEQ 466
Cdd:PRK02224 177 GVERVLSDQRGSLDQLKAQIEEKEEKDLH----ERLNGLESELAELDEEIERYEEQREQAretrDEADEVleeheeRREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 467 VNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 546
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 547 VEdlkaeiVAASEsrkelelkHEAEITNYKIKLEMLE------KEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSK 618
Cdd:PRK02224 333 CR------VAAQA--------HNEEAESLREDADDLEeraeelREEAAELESELEEAREAVEDRREEIeeLEEEIEELRE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 619 LKEDLEVEhrinIEKLKDNLgihykqqiDGLQNEMNRKMESMQCETDNLITQQNQlILENSKLRDLQECLVNSkseemnl 698
Cdd:PRK02224 399 RFGDAPVD----LGNAEDFL--------EELREERDELREREAELEATLRTARER-VEEAEALLEAGKCPECG------- 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 699 QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEdDLQEKCAQLDAenniLKEEKRVLEDKLkmyspSEQ 778
Cdd:PRK02224 459 QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIER----LEERREDLEELI-----AER 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 779 EERsiaVDPSTSKSADSRwqKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQReytcLLKIRDDL- 857
Cdd:PRK02224 529 RET---IEEKRERAEELR--ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES----LERIRTLLa 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 858 ---EATQTKQAL-EYESKLRALEEE----LLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLEL 929
Cdd:PRK02224 600 aiaDAEDEIERLrEKREALAELNDErrerLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568932676 930 SEKVSGLSEQLKqthctinslsaEVRALKQEKEQLLLRCGELELL 974
Cdd:PRK02224 680 QAEIGAVENELE-----------ELEELRERREALENRVEALEAL 713
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2033-2300 |
1.40e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2033 QAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEqallasaepfpkvedqkrsgaveadpels 2112
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2113 levqlqverdatdrkqKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfkdeIEKLGFAMK 2192
Cdd:COG4942 69 ----------------RRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR-----QPPLALLLS 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2193 ESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERLMSEREHE 2267
Cdd:COG4942 128 PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELeaeraELEALLAELEEERAALEALKAERQKLLARLEKE 207
|
250 260 270
....*....|....*....|....*....|...
gi 568932676 2268 KKQREEEVEQLTGVVEKLQQEVVSTEQQREGAR 2300
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2057-2299 |
1.69e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2057 SKEQLQRDIQERNEEIEKLECRVRELEQAllasaepfpkvedqkrsgaveadpELSLEVQLQVERDATDRKQKEITNLEE 2136
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKE------------------------EKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2137 QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfkdeIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEK 2216
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR-----QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2217 EIEIDRLNEQFIKLQQQLKLTTD----------------NKVIEEQKEQIQDLETQIERLmserEHEKKQREEEVEQLTG 2280
Cdd:COG4942 152 AEELRADLAELAALRAELEAERAeleallaeleeeraalEALKAERQKLLARLEKELAEL----AAELAELQQEAEELEA 227
|
250
....*....|....*....
gi 568932676 2281 VVEKLQQEVVSTEQQREGA 2299
Cdd:COG4942 228 LIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1729-2155 |
1.78e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1729 EEGAELSQRLVRSGFAgpviDPENEELMLNISSrLQAAVEKLLEAISETNTQLEHAKvTQTELMRESFRQKQEATESLHC 1808
Cdd:PRK02224 290 ELEEERDDLLAEAGLD----DADAEAVEARREE-LEDRDEELRDRLEECRVAAQAHN-EEAESLREDADDLEERAEELRE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1809 LEELRERLQEESR-AREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQR----RVE 1883
Cdd:PRK02224 364 EAAELESELEEAReAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtareRVE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1884 EERQLLcrqreamraEAG--PVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEI-----DV 1956
Cdd:PRK02224 444 EAEALL---------EAGkcPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1957 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQ---AIDREHERDVFQQEIQKLEHQLKAVP-RIQpvseh 2032
Cdd:PRK02224 515 EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKreaAAEAEEEAEEAREEVAELNSKLAELKeRIE----- 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2033 QAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAepfpkVED--QKRSGAVEADPE 2110
Cdd:PRK02224 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR-----IEEarEDKERAEEYLEQ 664
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568932676 2111 LslEVQLQVERDATDRKQKEITNLE---EQLEQFREELENKNDEVQEL 2155
Cdd:PRK02224 665 V--EEKLDELREERDDLQAEIGAVEnelEELEELRERREALENRVEAL 710
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
271-770 |
1.80e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 271 EDLQAQISFLQEKLRAFEMEKDRKIENLNAKEiQEKQALIDELNTRVVEEEKKTvELKNKVTTADELLGGLHEQltqrNQ 350
Cdd:PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAM-DDYNNLKSALNELSSLEDMKN-RYESEIKTAESDLSMELEK----NN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 351 EIQSLKLELGNSQQNE-RKCSEEIKELMRTVEELQkrNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQ-----I 424
Cdd:PRK01156 274 YYKELEERHMKIINDPvYKNRNYINDYFKYKNDIE--NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKsryddL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 425 VQMKQELINQHM---SQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE 501
Cdd:PRK01156 352 NNQILELEGYEMdynSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 502 KSALQSQSNDLLEEVRFLR--------------EQVQKARQTIAEQENRL-SEARKSLSTVEDLKAEIVAASESRKELEL 566
Cdd:PRK01156 432 IRALRENLDELSRNMEMLNgqsvcpvcgttlgeEKSNHIINHYNEKKSRLeEKIREIEIEVKDIDEKIVDLKKRKEYLES 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 567 KHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAEL--ERLRTQLLFSHEEELSKLKED----LEVEHRINIEKL---KDN 637
Cdd:PRK01156 512 EEINKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLKLEDLDSKRTSwlnaLAVISLIDIETNrsrSNE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 638 LGIHYKQQIDGLqNEMNRKMESMQCETDNLITQ-QNQLILENSKLRDLQeclvnskseEMNLQINELQKEIEILKQEEKE 716
Cdd:PRK01156 592 IKKQLNDLESRL-QEIEIGFPDDKSYIDKSIREiENEANNLNNKYNEIQ---------ENKILIEKLRGKIDNYKKQIAE 661
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 717 KGTLEQEVQELQLKTEQLEKQLKEKE---DDLQEKCAQLDAENNILKEEKRVLEDKL 770
Cdd:PRK01156 662 IDSIIPDLKEITSRINDIEDNLKKSRkalDDAKANRARLESTIEILRTRINELSDRI 718
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1989-2165 |
1.87e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1989 EKMRKFLDEQAIDreherdvfqQEIQKLEHQLKAVPRiqpvsehqarEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2068
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2069 NEEIEKLECRVRELEQALLA----------SAEpfpkVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQL 2138
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNvrnnkeyealQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEL 140
|
170 180
....*....|....*....|....*..
gi 568932676 2139 EQFREELENKNDEVQELLMQLEIQRKE 2165
Cdd:COG1579 141 EEKKAELDEELAELEAELEELEAEREE 167
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1834-2494 |
1.93e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1834 ESVIDGYSDEKTLFERQIQEKTDIIE----HLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpveQRPID 1909
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL----QNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1910 AAAGAARGAEFLQETEKLMKEKLEVQCQAEKvrGDLQkQVKALEIDVEEQVSRfiELEQEKNAELTDLRQQSQALEKQLE 1989
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLSHE--GVLQ-EIRSILVDFEEASGK--KIYEHDSMSTMHFRSLGSAISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1990 KMR---KFLDEQAIDREHERDVFQQEIQ-KLEHQLKA-VPRI-QPVSEHQArEVEQLTNHLKEKTDRCSELLLSKEQLQR 2063
Cdd:pfam15921 228 ELDteiSYLKGRIFPVEDQLEALKSESQnKIELLLQQhQDRIeQLISEHEV-EITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2064 DIQERNE----EIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSlevQLQVERDatdrkqkeitnleeqle 2139
Cdd:pfam15921 307 QARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT---EARTERD----------------- 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2140 QFREELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDE------IEKLGFAMKESDSVSTRDQPMLFGKFAQLI 2213
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLHKREKELSL---EKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQ 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2214 QEKEIEIDRLN------EQFIKLQQQLKLTTD--NKVIEEQKEQIQDLETQiERLMSEREHEKKQREEEVEQLTGVVEKL 2285
Cdd:pfam15921 444 GQMERQMAAIQgkneslEKVSSLTAQLESTKEmlRKVVEELTAKKMTLESS-ERTVSDLTASLQEKERAIEATNAEITKL 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2286 Q-------QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQ-----------VMTHMNNVLKEINFK 2347
Cdd:pfam15921 523 RsrvdlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDR 602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2348 MDQITQSLCNLNKECASNEELPS----LPKESVHMTvhELGSDNLQpedaPAQDVTKPLEKQTSLTRLQKSPEASRTQEI 2423
Cdd:pfam15921 603 RLELQEFKILKDKKDAKIRELEArvsdLELEKVKLV--NAGSERLR----AVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 2424 ESLASSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRS---LEKFAAALVSQV-----QMEAAQEYVPFHQE 2494
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghAMKVAMGMQKQItakrgQIDALQSKIQFLEE 755
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
692-752 |
2.21e-04 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 43.35 E-value: 2.21e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 692 KSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQL 752
Cdd:pfam02403 44 ELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELKELEAELDKLLLTI 104
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
3014-3303 |
2.31e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3014 EKMVVA--ELKSELAQAKLELGTTLKAQHKRLKELEA-FRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGH 3090
Cdd:pfam05483 193 EKMILAfeELRVQAENARLEMHFKLKEDHEKIQHLEEeYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3091 HEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQkqllnesQQKIESQKMLHD---------AQLSEEQGRNLG-LQALLE 3160
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-------QRSMSTQKALEEdlqiatktiCQLTEEKEAQMEeLNKAKA 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3161 SEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKD 3240
Cdd:pfam05483 346 AHSFVVTEFEATTCSLEELLRTEQQRLEK--------NEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAED 417
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932676 3241 rqvhqktlQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRLQGLMQEFQKQ 3303
Cdd:pfam05483 418 --------EKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKE 472
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2942-3227 |
2.56e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2942 QKADRRSLLAEIEDLRAQINGGKMTLER-EQGTEKSSQELLDCSMQ----QKQSLEMQLELSSLRDRAAELQEQLSSEKM 3016
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3017 VVAELKSELAQAKLELGTTLKAQHKRLKELEAF-----RSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHH 3091
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3092 EgREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKS 3171
Cdd:TIGR02169 832 E-KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3172 TLDKERELYAQLQSR----------------EDGGQPPPALPSEDLLKELQK---------------------------- 3207
Cdd:TIGR02169 911 QIEKKRKRLSELKAKlealeeelseiedpkgEDEEIPEEELSLEDVQAELQRveeeiralepvnmlaiqeyeevlkrlde 990
|
330 340
....*....|....*....|....*.
gi 568932676 3208 ------QLEEKHSRIVELLSETEKYK 3227
Cdd:TIGR02169 991 lkekraKLEEERKAILERIEEYEKKK 1016
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
236-746 |
2.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKE-EDLQAQISFLQEKLRAFEMEKDRKIENlnAKEIQEKQALIDELN 314
Cdd:COG4717 38 TLLAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEELEEL--EEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 315 TRV--VEEEKKTVELKNKVTTADELLGGLH---EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLK 389
Cdd:COG4717 116 EELekLEKLLQLLPLYQELEALEAELAELPerlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 390 DSWLETSAVRRVEQETQRKLSHLQAELDemygkqivqmkqelinQHMSQIEELKSQHKREMENTLKSDTNAAIskeqvnL 469
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELE----------------ELEEELEQLENELEAAALEERLKEARLLL------L 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 470 MNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 549
Cdd:COG4717 254 IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 550 LKAEIVAASESRKE--LELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSKLKEDLEV 625
Cdd:COG4717 334 LSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeYQELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 626 EHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMEsmqcETDNLITQQNQLILENSKLRDLQEclvnskseemnlqINELQK 705
Cdd:COG4717 414 LLGELEELLEALDEEELEEELEELEEELEELEE----ELEELREELAELEAELEQLEEDGE-------------LAELLQ 476
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 568932676 706 EIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQ 746
Cdd:COG4717 477 ELEELKAELRE---LAEEWAALKLALELLEEAREEYREERL 514
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1757-2297 |
3.05e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1757 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESV 1836
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1837 IDGYSDEKTLFERqiqektdiiehleqevlcmnnRLQELESDQRRVEEerQLLCRQREAMRAEAGPVEQRPIdaaagaar 1916
Cdd:TIGR00618 482 HLQETRKKAVVLA---------------------RLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRM-------- 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1917 gaeflqetEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEqvsrfielEQEKNAELTDLRQQSQALEKQLEKMRKFLD 1996
Cdd:TIGR00618 531 --------QRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--------MQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1997 eqaidreherdvfqqeiqklehqlkavpRIQPVSEHQAREVEQLTNHLKEktdrcselLLSKEQLQRDIQERNEEIEKLE 2076
Cdd:TIGR00618 595 ----------------------------RLQDLTEKLSEAEDMLACEQHA--------LLRKLQPEQDLQDVRLHLQQCS 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2077 CRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL 2156
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYD 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2157 MQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQ------EKEIEIDRLNEQFIKL 2230
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQtgaelsHLAAEIQFFNRLREED 797
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 2231 QQQLKlTTDNKVIEEQKEQIQDLETQIERLMSEREhEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2297
Cdd:TIGR00618 798 THLLK-TLEAEIGQEIPSDEDILNLQCETLVQEEE-QFLSRLEEKSATLGEITHQLLKYEECSKQLA 862
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
302-560 |
3.17e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 302 EIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRtve 381
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 382 ELQKRNLKDSWLE--------TSAVRRVEqetqrklshlqaeldemYGKQIVQMKQELINQHMSQIEELKSQHKREMENT 453
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 454 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 533
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
250 260
....*....|....*....|....*..
gi 568932676 534 ENRLSEARKSLSTVEDLKAEIVAASES 560
Cdd:COG3883 237 AAAAAAAASAAGAGAAGAAGAAAGSAG 263
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1958-2328 |
3.26e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1958 EQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAVPRIQpvsehQAREV 2037
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEA-----------ELEELREELEKLEKLLQLLPLYQ-----ELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2038 EQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQallasaepfpkvedqkrsgaveadpELSLEVQL 2117
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLE-------------------------QLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2118 QVERDATDRK--QKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKEsttrlQELQQENRLFKDEIEKLGFAMKESD 2195
Cdd:COG4717 193 ELQDLAEELEelQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE-----ERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2196 SVSTRDQ-PMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQ--------DLETQIERLMSEREH 2266
Cdd:COG4717 268 LLSLILTiAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELlaalglppDLSPEELLELLDRIE 347
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 2267 EKKQREEEVEQLTgvvEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKV------TAEKLVLEQQVE 2328
Cdd:COG4717 348 ELQELLREAEELE---EELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeyqelKEELEELEEQLE 412
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
471-882 |
3.89e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 471 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALqsqsnDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDL 550
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 551 KAEIVAASESRKELE-----------LKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEaELERLRTQLlfsheEELSKL 619
Cdd:COG4717 162 EEELEELEAELAELQeeleelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEEL-----EQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 620 KEDLEVEHRINIEK--------------LKDNLGIHYKQQIDGLQ----------NEMNRKMESMQCETDNLITQQNQLI 675
Cdd:COG4717 236 LEAAALEERLKEARlllliaaallallgLGGSLLSLILTIAGVLFlvlgllallfLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 676 LENSKLRDLQECLVNSKSEEmNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQ---LEKQLKEKEDDLQEKCAQL 752
Cdd:COG4717 316 LEEEELEELLAALGLPPDLS-PEELLELLDRIEELQELLREAEELEEELQLEELEQEIaalLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 753 DAENNiLKEEKRVLEDKLKMYSPSEQEERSiAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFA 832
Cdd:COG4717 395 EEYQE-LKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 833 EKNFEVNY-----QELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSK 882
Cdd:COG4717 473 ELLQELEElkaelRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSR 527
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2142-2487 |
3.89e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 3.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2142 REELENKNDEVQELLMQLEIQRKESTTRLQELQQE-----------NRLFKDEIEKLGFAMKESDSVSTRDQpmlfgkfa 2210
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLEPLERQaekaeryrelkEELKELEAELLLLKLRELEAELEELE-------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2211 QLIQEKEIEIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLtgvvEKL 2285
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELeelrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL----EEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2286 QQEVVSTEQQREGARTlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASN 2365
Cdd:COG1196 322 EEELAELEEELEELEE----------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2366 EElpslpkesvhmTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCREQTE 2445
Cdd:COG1196 392 LR-----------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568932676 2446 TIQ--EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQE 2487
Cdd:COG1196 461 LLEllAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2134-2345 |
4.15e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2134 LEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLF----------------KDEIEKLGFAMKESDSV 2197
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeaklllqqlselESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2198 STRDQPMLFGKFAQLIQEKEI-EIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERlmsEREHEKKQR 2271
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpVIQQLRAQLAELEAELaelsaRYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 2272 EEEVEQLTGVVEKLQQEVvstEQQREGARTLPEDEesfkhqldkvtAEKLVLEQQVETTNQVMTHMNNVLKEIN 2345
Cdd:COG3206 319 EAELEALQAREASLQAQL---AQLEARLAELPELE-----------AELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
423-640 |
4.26e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 423 QIVQMKQELINQhmsqieELKSQHKreMENTLKSDTNAAISKEQ------VNLMN---AAINELNVRLQETHAQKEELKG 493
Cdd:PHA02562 184 QTLDMKIDHIQQ------QIKTYNK--NIEEQRKKNGENIARKQnkydelVEEAKtikAEIEELTDELLNLVMDIEDPSA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 494 ELGVVLGEKSALQSQSNDLLEEVRFLRE--QVQKARQTIAEQENRLSEARKSLSTV----EDLKAEIVAASE-------- 559
Cdd:PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMYEKggVCPTCTQQISEGPDRITKIKDKLKELqhslEKLDTAIDELEEimdefneq 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 560 SRKELELKHEAEITNYKIKLEmlekeknavlDRMAESQEAELERLRTQLLfSHEEELSKLKEDLE--VEHRINIEKLKDN 637
Cdd:PHA02562 336 SKKLLELKNKISTNKQSLITL----------VDKAKKVKAAIEELQAEFV-DNAEELAKLQDELDkiVKTKSELVKEKYH 404
|
...
gi 568932676 638 LGI 640
Cdd:PHA02562 405 RGI 407
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1544-2083 |
4.38e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1544 LNEQLEDMRQELVRQYEEHQQATEMLRQAHM------QQMERQREDQEQLQEEIKRLNEQLAQDGHDDQEVEEQ--TLKD 1615
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAelarleQDIARLEERRRELEERLEELEEELAELEEELEELEEEleELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1616 KTLERSPEDALLDRNLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATT 1695
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1696 CAPEDCARAMDESIpsypgTAIATHDSIWSKVTEEGAELSQRLVRSGfagpvidpENEELMLNISSRLQAAVEKLLEAIS 1775
Cdd:COG1196 425 ELEEALAELEEEEE-----EEEEALEEAAEEEAELEEEEEALLELLA--------ELLEEAALLEAALAELLEELAEAAA 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1776 ETNTQLEhakvtqtelMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEktLFERQIQEKT 1855
Cdd:COG1196 492 RLLLLLE---------AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN--IVVEDDEVAA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1856 DIIEHLEQEVLcmnNRLQELESDQRRVEEERQLLCRQREAMRAEAGpVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQ 1935
Cdd:COG1196 561 AAIEYLKAAKA---GRATFLPLDKIRARAALAAALARGAIGAAVDL-VASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1936 CQAEKVRGDLqKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK 2015
Cdd:COG1196 637 RRAVTLAGRL-REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 2016 LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrcsELLLSKEQLQRDIQERNEEIEKLECRVRELE 2083
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLE---EEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
5-578 |
4.57e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 5 ERQRKLAAGKAKLARFRQRKAQYDGDIPKKQKKKRTSSSKHDSSLHTDQQSGELCSESSQRVDLAgNPDCSGPERKHGQV 84
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA-KKKAEEDKKKADEL 1410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 85 FSAEPESEISTTADECSSEINGCNSVMK----PRKPTDPLREEEFSLDDSSSEQGAQSSQTCLQMVEKelAEKQHDIEEL 160
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKkaeeAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK--AEEAKKADEA 1488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 161 TQELEEMR-----ASFGTEGLKQLQEFEAAIKQRDGiitqltanlQQARREKDDTMVEFLELTEQSQKLQiqfqHLQANE 235
Cdd:PTZ00121 1489 KKKAEEAKkkadeAKKAAEAKKKADEAKKAEEAKKA---------DEAKKAEEAKKADEAKKAEEKKKAD----ELKKAE 1555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQA-----LI 310
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAeeekkKV 1635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 311 DELNTRVVEEEKKTVELKNkvttADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK---ELMRTVEELQKRN 387
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKK----AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaEEAKKAEELKKKE 1711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 388 LKDSwLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQElinQHMSQIEELKSQHKREMENTLKsDTNAAISKEQV 467
Cdd:PTZ00121 1712 AEEK-KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE---EEKKKIAHLKKEEEKKAEEIRK-EKEAVIEEELD 1786
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 468 NLMNAAINELNVRLQETHAQKEEL-----KGELgVVLGEKSALQSQ-------SNDLLEEVRFLREQVQKARQTIAEQEN 535
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDIFDNFANIieggkEGNL-VINDSKEMEDSAikevadsKNMQLEEADAFEKHKFNKNNENGEDGN 1865
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568932676 536 RLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIK 578
Cdd:PTZ00121 1866 KEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
137-828 |
4.88e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 137 QSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQ---QARREKDDTMVE 213
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEkvfQGTDEQLNDLYH 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 214 FLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR 293
Cdd:TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 294 KIENLNA----KEIQEKQA-----LIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQ 364
Cdd:TIGR00606 389 ERQIKNFhtlvIERQEDEAktaaqLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 365 NERKCSEEIKELMRTVEELQK----RNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMS--- 437
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKaeknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkd 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 438 -QIEELKSQHKREMENTLK--------SDTNAAISKEqVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQ 508
Cdd:TIGR00606 549 eQIRKIKSRHSDELTSLLGyfpnkkqlEDWLHSKSKE-INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDK 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 509 ------SNDLLEEVRFLREQVQKAR--------------QTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKH 568
Cdd:TIGR00606 628 lfdvcgSQDEESDLERLKEEIEKSSkqramlagatavysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLA 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 569 EAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLrtqllfshEEELSKLKEDLEVEHRiNIEKLKDNLGIHYKQqidg 648
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEMLG-LAPGRQSIIDLK--------EKEIPELRNKLQKVNR-DIQRLKNDIEEQETL---- 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 649 LQNEMNRKMESMQCETDNLITQQNQLILENSKlRDLQECLVNSKSEEMNLQINELQKEIEilkQEEKEKGTLEQEVQELQ 728
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQVNQEKQ---EKQHELDTVVSKIELNR 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 729 LKTEqlekqlkekedDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKET 808
Cdd:TIGR00606 850 KLIQ-----------DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918
|
730 740
....*....|....*....|
gi 568932676 809 EDLQQQclylNEEIEKQRNT 828
Cdd:TIGR00606 919 EKDQQE----KEELISSKET 934
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
335-596 |
5.01e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 335 DELLGGLHE----QLTQRNQEIQSLKLElgnsqqNERKCSEEIKELMRTVEE-LQKRNLKDSWLETSAVRRVE---QETQ 406
Cdd:PRK05771 19 DEVLEALHElgvvHIEDLKEELSNERLR------KLRSLLTKLSEALDKLRSyLPKLNPLREEKKKVSVKSLEeliKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 407 RKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKS-----QHKREMENTLKSDtnAAISKEQVNLMNAAINELNV 479
Cdd:PRK05771 93 EELEKIEKEIKEL-EEEISELENEIkeLEQEIERLEPWGNfdldlSLLLGFKYVSVFV--GTVPEDKLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 480 RLqethaqKEELKGELGVVL-GEKSALQSQSnDLLEEVRFLREQVQ---KARQTIAEQENRLSEarkslstvedLKAEIV 555
Cdd:PRK05771 170 EY------ISTDKGYVYVVVvVLKELSDEVE-EELKKLGFERLELEeegTPSELIREIKEELEE----------IEKERE 232
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 568932676 556 AASESRKELELKHEAEITNYKIKLEMlEKEKNAVLDRMAES 596
Cdd:PRK05771 233 SLLEELKELAKKYLEELLALYEYLEI-ELERAEALSKFLKT 272
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
2122-2351 |
5.13e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 46.00 E-value: 5.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2122 DATDRKQKEITNLEEQLEQFREELENKN--------DEVQELLMQLEIQRKESTTRLQELQQEnrlFKDEIEKLGFAMKE 2193
Cdd:pfam06160 146 PAIDELEKQLAEIEEEFSQFEELTESGDylearevlEKLEEETDALEELMEDIPPLYEELKTE---LPDQLEELKEGYRE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2194 sdsvstrdqpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTdnkvIEEQKEQIQDLETQIERLMSEREHEKKQREE 2273
Cdd:pfam06160 223 ----------MEEEGYALEHLNVDKEIQQLEEQLEENLALLENLE----LDEAEEALEEIEERIDQLYDLLEKEVDAKKY 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2274 EVEQLTGVVEKLQQ-EVVSTEQQREGAR-----TLPEDE----ESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKE 2343
Cdd:pfam06160 289 VEKNLPEIEDYLEHaEEQNKELKEELERvqqsyTLNENElervRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEE 368
|
....*...
gi 568932676 2344 INFKMDQI 2351
Cdd:pfam06160 369 ILEQLEEI 376
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
280-862 |
5.18e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 280 LQEKLRAFEMEKDRKIENLN-AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTT-ADELLGGLH--EQLTQRNQEIQSL 355
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKyADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENyIDEIKAQINdlEDVADKAISNDDP 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 356 KlELGNSQQN-------ERKCSEEIKELMRTVEELQK--------RNLKDSW---LETSAVRRVEQETQRKLSHLQAEld 417
Cdd:TIGR01612 1169 E-EIEKKIENivtkidkKKNIYDEIKKLLNEIAEIEKdktsleevKGINLSYgknLGKLFLEKIDEEKKKSEHMIKAM-- 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 418 EMYGKQIVQMKQEliNQHMSQIEELKSQHKREME--NTLKSDTNAAISKEQVNLMNAA-INELNVRLQETHAQKE---EL 491
Cdd:TIGR01612 1246 EAYIEDLDEIKEK--SPEIENEMGIEMDIKAEMEtfNISHDDDKDHHIISKKHDENISdIREKSLKIIEDFSEESdinDI 1323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 492 KGELGVVLGEKSALQSQSNDLLEEVRFLRE-----QVQKARQTIAEQENRLSEARKS----LSTVEDLKAEIVAASeSRK 562
Cdd:TIGR01612 1324 KKELQKNLLDAQKHNSDINLYLNEIANIYNilklnKIKKIIDEVKEYTKEIEENNKNikdeLDKSEKLIKKIKDDI-NLE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 563 ELELKHEAEITNYKIK--LEMLEKEKNAVLDRMAES----QEAELERLRTQLLFSHEEE--------LSKLKEDLEVEHR 628
Cdd:TIGR01612 1403 ECKSKIESTLDDKDIDecIKKIKELKNHILSEESNIdtyfKNADENNENVLLLFKNIEMadnksqhiLKIKKDNATNDHD 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 629 INIEKLKDNL--GIHYKQQID--GLQNEMNRKM-ESMQCETDNLITQQNQLILEN--SKLRDLQECLVNSKSEEMNLQIN 701
Cdd:TIGR01612 1483 FNINELKEHIdkSKGCKDEADknAKAIEKNKELfEQYKKDVTELLNKYSALAIKNkfAKTKKDSEIIIKEIKDAHKKFIL 1562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 702 ELQKEIEILKQEEKEKGTLEQEVQE----------LQLKTEQLEKQLKeKEDDLQEKCaqldaeNNILKEEKRVlEDKLK 771
Cdd:TIGR01612 1563 EAEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidIQLSLENFENKFL-KISDIKKKI------NDCLKETESI-EKKIS 1634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 772 MYSPSEQE-ERSIAVDPSTSKSAdsrWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCL 850
Cdd:TIGR01612 1635 SFSIDSQDtELKENGDNLNSLQE---FLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIA 1711
|
650
....*....|..
gi 568932676 851 LKirDDLEATQT 862
Cdd:TIGR01612 1712 NK--EEIESIKE 1721
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
694-988 |
5.62e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 5.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 694 EEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDaENNILKEEKRVLEDKLKM- 772
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLED-MKNRYESEIKTAESDLSMe 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 773 ------YSPSEQEERSIAVDPSTSKSADSRwqkEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAE--KNFEVNYQELQ 844
Cdd:PRK01156 269 leknnyYKELEERHMKIINDPVYKNRNYIN---DYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSvlQKDYNDYIKKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 845 REYTCLLKIRDDLEATQTKqaleYESKLRALEEelLSKRGNPAAPKGKSSGIFPSETLEIGEVvekDTTELMEKLEVTKR 924
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMD----YNSYLKSIES--LKKKIEEYSKNIERMSAFISEILKIQEI---DPDAIKKELNEINV 416
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 925 EKLELSEKVSglseqlkqthctinSLSAEVRALKQEKEqlllrcgelELLANPSGTENAAVCPV 988
Cdd:PRK01156 417 KLQDISSKVS--------------SLNQRIRALRENLD---------ELSRNMEMLNGQSVCPV 457
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1824-2156 |
6.29e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpv 1903
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAER--- 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1904 EQRPIDAAAGAARGAEFLQETEKLMKEklEVQCQAEKVRGDLQKQVKALEIDVEEQVSRfieLEQEKNAELTDLRQQSQA 1983
Cdd:pfam12128 677 KDSANERLNSLEAQLKQLDKKHQAWLE--EQKEQKREARTEKQAYWQVVEGALDAQLAL---LKAAIAARRSGAKAELKA 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1984 LEKQLEKMRKFL--DEQAI-DREHERDVFQQEIQKLEHQLKAV---------------PRIQPVSEHQAREVEQLTNHLK 2045
Cdd:pfam12128 752 LETWYKRDLASLgvDPDVIaKLKREIRTLERKIERIAVRRQEVlryfdwyqetwlqrrPRLATQLSNIERAISELQQQLA 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2046 EKTDRcSELLLSKEQLQRDIQER-----NEEIEKLECRVREL---------EQALLASAEPFPKVEDQKRSGAveadpEL 2111
Cdd:pfam12128 832 RLIAD-TKLRRAKLEMERKASEKqqvrlSENLRGLRCEMSKLatlkedansEQAQGSIGERLAQLEDLKLKRD-----YL 905
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568932676 2112 SLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL 2156
Cdd:pfam12128 906 SESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLL 950
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1868-2221 |
6.48e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1868 MNNRLQELESDQRRVEEERQLLCRQREAmrAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQcQAEKVRGDLQK 1947
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKK--ALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL-RDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1948 QVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAvpriq 2027
Cdd:pfam02463 258 QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK----- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2028 pvsehQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQK----RSG 2103
Cdd:pfam02463 333 -----EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKseeeKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2104 AVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDE 2183
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350
....*....|....*....|....*....|....*...
gi 568932676 2184 IEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEID 2221
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRII 525
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
146-634 |
6.87e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 146 VEKELAEKQHDIEELTQELEEMRAsfgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDD---TMVEFLELTEQSQ 222
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEE---KDLHERLNGLESELAELDEEIERYEEQREQARETRDEadeVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 223 KLQIQFQHLQAN--------ETLQN--STLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKD 292
Cdd:PRK02224 255 TLEAEIEDLRETiaetererEELAEevRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 293 RKIENLNaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNS---------- 362
Cdd:PRK02224 335 VAAQAHN-EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDApvdlgnaedf 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 363 ----QQNERKCSEEIKELMRTVEELQKRNLKDSWL-------------ETSAVRRVEQETQRKLSHLQAELDEmygkqiV 425
Cdd:PRK02224 414 leelREERDELREREAELEATLRTARERVEEAEALleagkcpecgqpvEGSPHVETIEEDRERVEELEAELED------L 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 426 QMKQELINQHMSQIEELKSQHKRemenTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSAL 505
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDR----IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 506 QSQSNDLLEEVRFL----------REQVQKARQTIAEQEN------RLSEARKSLSTVEDLKAEIVAA-SESRKELELKH 568
Cdd:PRK02224 564 EEEAEEAREEVAELnsklaelkerIESLERIRTLLAAIADaedeieRLREKREALAELNDERRERLAEkRERKRELEAEF 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 569 EAE---------------ITNYKIKLEMLEKEKNAVLDR--MAESQEAELERLRTQL------------LFSHEEELSKL 619
Cdd:PRK02224 644 DEArieearedkeraeeyLEQVEEKLDELREERDDLQAEigAVENELEELEELRERRealenrvealeaLYDEAEELESM 723
|
570
....*....|....*.
gi 568932676 620 KEDLEVEHRI-NIEKL 634
Cdd:PRK02224 724 YGDLRAELRQrNVETL 739
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1824-2361 |
7.01e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 7.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1824 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESD----QRRVEEER---QLLCRQREAM 1896
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEIlhelESRLEEEEersQQLQNEKKKM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1897 RAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIElEQEKNAELTD 1976
Cdd:pfam01576 102 QQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAE-EEEKAKSLSK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1977 LRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQlkavpriqpVSEHQAReVEQLTNHLKEKTDRCSELLL 2056
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ---------IAELQAQ-IAELRAQLAKKEEELQAALA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2057 SKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEE 2136
Cdd:pfam01576 251 RLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE---ALKTELEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2137 QLEQFREELEnknDEVQELLMQLEIQRKESTTRLQELQQE---NRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLI 2213
Cdd:pfam01576 328 EVTELKKALE---EETRSHEAQLQEMRQKHTQALEELTEQleqAKRNKANLEKAKQALESENAELQAELRTL----QQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2214 QEKEIEIDRLNEQFIKLqqQLKLTTDNKVIEEQKEQIQDLETQIER---LMSEREHEKKQREEEV----EQLTGVVEKLQ 2286
Cdd:pfam01576 401 QDSEHKRKKLEGQLQEL--QARLSESERQRAELAEKLSKLQSELESvssLLNEAEGKNIKLSKDVssleSQLQDTQELLQ 478
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 2287 QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2361
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1966-2187 |
7.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1966 LEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQklehqlkavprIQPVSEHQAREVEQLTnhlk 2045
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEA----EAALEEFRQKNG-----------LVDLSEEAKLLLQQLS---- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2046 ektdrcselllskeQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpELSLEVQLQVERDATD 2125
Cdd:COG3206 223 --------------ELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYT 287
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568932676 2126 RKQKEITNLEEQLEQFREELENkndEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2187
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
652-964 |
8.99e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 8.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 652 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKT 731
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 732 EQLEKQLKEKEDDLQEKCAQLDAENNilKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDL 811
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 812 QQqclyLNEEIEKQRntfafaeknfeVNYQELQREYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRgnpaapkg 891
Cdd:TIGR02169 339 EE----LEREIEEER-----------KRRDKLTEEYAELKEELEDLRA----ELEEVDKEFAETRDELKDYR-------- 391
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932676 892 kssgifpsetleigevvekdttelmEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 964
Cdd:TIGR02169 392 -------------------------EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1873-2260 |
1.03e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1873 QELESDQRRVEEERQLLcrqrEAMRAEAGPVEQRPIDAAAGAARGAEFLQetekLMKEKLEVQCQAEKVRGDLQKqvkaL 1952
Cdd:PRK04863 293 RELYTSRRQLAAEQYRL----VEMARELAELNEAESDLEQDYQAASDHLN----LVQTALRQQEKIERYQADLEE----L 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1953 EIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEIQKLEhQLKAVPRIQPV 2029
Cdd:PRK04863 361 EERLEEQN----EVVEEADEQQEENEARAEAAEEEVDELKSQLAdyQQALDVQQTRAIqYQQAVQALE-RAKQLCGLPDL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2030 SEHQARE-VEQLTNHLKEKTDRcselLLSKEQLQRDIQERNEEIEKLECRVREL------EQALLASAEPFPKVEDQK-- 2100
Cdd:PRK04863 436 TADNAEDwLEEFQAKEQEATEE----LLSLEQKLSVAQAAHSQFEQAYQLVRKIagevsrSEAWDVARELLRRLREQRhl 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2101 --RSGAVEA---DPELSLEVQLQVERDATDRKQKEITNLE---------EQLEQFREELENKNDEVQELLMQLEIQRKES 2166
Cdd:PRK04863 512 aeQLQQLRMrlsELEQRLRQQQRAERLLAEFCKRLGKNLDdedeleqlqEELEARLESLSESVSEARERRMALRQQLEQL 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2167 TTRLQELQQ---ENRLFKDEIEKLGFAMKESDSVSTR-DQPMLfgkfAQLIQEKEIEIDRlneqfiklqqqlklttdnkv 2242
Cdd:PRK04863 592 QARIQRLAArapAWLAAQDALARLREQSGEEFEDSQDvTEYMQ----QLLERERELTVER-------------------- 647
|
410
....*....|....*...
gi 568932676 2243 iEEQKEQIQDLETQIERL 2260
Cdd:PRK04863 648 -DELAARKQALDEEIERL 664
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1972-2271 |
1.30e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 44.29 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1972 AELTDLRQQSQALEKQLEKMRKFLDEQAID--------REHERDVFQ--QEIQKLEHQLKAVPRIQPVSEHQAREVEQLT 2041
Cdd:pfam19220 83 GELEELVARLAKLEAALREAEAAKEELRIElrdktaqaEALERQLAAetEQNRALEEENKALREEAQAAEKALQRAEGEL 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2042 NHLKEKTDRCSElllSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQ---KRSGAVEADPELSLEV-QL 2117
Cdd:pfam19220 163 ATARERLALLEQ---ENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQlaaEQAERERAEAQLEEAVeAH 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2118 QVERDATDRKQKEITN----LEEQLEQFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENrlfKDEIEKLGFA 2190
Cdd:pfam19220 240 RAERASLRMKLEALTAraaaTEQLLAEARNQLRDRDEAIRAAerrLKEASIERDTLERRLAGLEADL---ERRTQQFQEM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2191 MKESDSVSTRDqpmlfGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDnkvieEQKEQIQDLETQIERLMSEREHEKKQ 2270
Cdd:pfam19220 317 QRARAELEERA-----EMLTKALAAKDAALERAEERIASLSDRIAELTK-----RFEVERAALEQANRRLKEELQRERAE 386
|
.
gi 568932676 2271 R 2271
Cdd:pfam19220 387 R 387
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2216-2568 |
1.30e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2216 KEIEIDRLNEQFIKLQQ-QLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQ 2294
Cdd:COG1196 220 EELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2295 QREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELpslpKE 2374
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2375 SVHMTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSpEASRTQEIESLASSVGAKDVELTQCREQTETIQE---QA 2451
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-LERLEEELEELEEALAELEEEEEEEEEALEEAAEeeaEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2452 QSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQEYVPFHQEKQPVSSAPGSTDIQNANGLTGAsteSLIPTVTLRLAE 2531
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL---RGLAGAVAVLIG 531
|
330 340 350
....*....|....*....|....*....|....*..
gi 568932676 2532 VESRVAEVHSGTMSEKLVGIVGGNAsETEKRVIELQK 2568
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDD-EVAAAAIEYLK 567
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
146-722 |
1.34e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 146 VEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 225
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSH-SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 226 IQfqhLQANETLQNST--LSRTATDLLQAKRQ----IFTQQQQLQDYQKKEEDLQAQISFLQEKLR-AFEMEKDRkienl 298
Cdd:PRK01156 267 ME---LEKNNYYKELEerHMKIINDPVYKNRNyindYFKYKNDIENKKQILSNIDAEINKYHAIIKkLSVLQKDY----- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 299 naKEIQEKQALIDELNTRVVEeekktvelknkvttadelLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMR 378
Cdd:PRK01156 339 --NDYIKKKSRYDDLNNQILE------------------LEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 379 ----TVEELQKRnlkdswleTSAVRRVEQETQRKLSHLQAELDEMYGKQI-VQMKQELINQHM------SQIEELKSQHK 447
Cdd:PRK01156 399 iqeiDPDAIKKE--------LNEINVKLQDISSKVSSLNQRIRALRENLDeLSRNMEMLNGQSvcpvcgTTLGEEKSNHI 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 448 REMENtlksdtnaaiskEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR 527
Cdd:PRK01156 471 INHYN------------EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKI 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 528 QTIAEQENRLSEARKSLST--VEDLKAEivaASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAE--SQEAELER 603
Cdd:PRK01156 539 NELKDKHDKYEEIKNRYKSlkLEDLDSK---RTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEieIGFPDDKS 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 604 LRTQLLFSHEEELSKL--KEDLEVEHRINIEKLKDNLGiHYKQQIDGL------QNEMNRKMESMQCETDNLITQQNQLI 675
Cdd:PRK01156 616 YIDKSIREIENEANNLnnKYNEIQENKILIEKLRGKID-NYKKQIAEIdsiipdLKEITSRINDIEDNLKKSRKALDDAK 694
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568932676 676 LENSKLRDLQECLVnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQ 722
Cdd:PRK01156 695 ANRARLESTIEILR-TRINELSDRINDINETLESMKKIKKAIGDLKR 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1546-2075 |
1.39e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1546 EQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQDGHDDQEVEEQTLKDKTLERSpeda 1625
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA---- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1626 llDRNLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAM 1705
Cdd:COG1196 395 --AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1706 DESIPSypgtAIATHDSIWSKVTEEGAELSQRLVRSGFAGPVIDPENEELMLNISSRLQ------AAVEKLLEAISETNT 1779
Cdd:COG1196 473 ALLEAA----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveAAYEAALEAALAAAL 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1780 QLEHAKVTQTELMRESF--RQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDI 1857
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYlkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1858 IEHLEQEvlcmNNRLQELESDQRRVEEERQLlcrqreamraeagpVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQ 1937
Cdd:COG1196 629 AARLEAA----LRRAVTLAGRLREVTLEGEG--------------GSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1938 AEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHE---RDVFQQEIQ 2014
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELE 770
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 2015 KLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrcsELLLSKEQLQRDIQERNEEIEKL 2075
Cdd:COG1196 771 RLEREIEALGPVNLLAIEEYEELEERYDFLSEQRE---DLEEARETLEEAIEEIDRETRER 828
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2055-2350 |
1.41e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2055 LLSKEQLQRDIQERN--EEIEKLEC-RVRELEQALLASAEPFPKVEDQKRSGAVEADPELSleVQLQVERDATDRkqkei 2131
Cdd:pfam17380 274 LLHIVQHQKAVSERQqqEKFEKMEQeRLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAA--IYAEQERMAMER----- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2132 tnlEEQLEQFR-EELENKNDEVQELLMQLEIQRKESTTRLQ-ELQQENRLFKDEIEklgfamkesdsvSTRDQPMLFGKF 2209
Cdd:pfam17380 347 ---ERELERIRqEERKRELERIRQEEIAMEISRMRELERLQmERQQKNERVRQELE------------AARKVKILEEER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2210 AQLIQEKEIEIDRLneqfiklqqqlklttdnkvieeQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEv 2289
Cdd:pfam17380 412 QRKIQQQKVEMEQI----------------------RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ- 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932676 2290 vstEQQREGARTLPEDEESFKHQLDKVtaEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQ 2350
Cdd:pfam17380 469 ---EEERKRKKLELEKEKRDRKRAEEQ--RRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1762-2189 |
1.41e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1762 RLQAAVEKLLEAISETNTQLEHAKVTQTELMREsfRQKQEATEslhcleELRERLQEESRAREQLAEELNKAESVIDGYS 1841
Cdd:pfam12128 434 EFNEEEYRLKSRLGELKLRLNQATATPELLLQL--ENFDERIE------RAREEQEAANAEVERLQSELRQARKRRDQAS 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1842 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEE-------RQLLCRQREAMRAEAGPVEQRP------I 1908
Cdd:pfam12128 506 EALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvisPELLHRTDLDPEVWDGSVGGELnlygvkL 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1909 DAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVR-GDLQKQVKALEIDVEEQVSrfiELEQEKNA-ELTDLRQQSQALEK 1986
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKqAAAEEQLVQANGELEKASR---EETFARTAlKNARLDLRRLFDEK 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1987 QLEKMRKfldEQAIDREheRDVFQQEIQKLEHQLKAVPR-IQPVSEHQAREVEQLTNH---------------------- 2043
Cdd:pfam12128 663 QSEKDKK---NKALAER--KDSANERLNSLEAQLKQLDKkHQAWLEEQKEQKREARTEkqaywqvvegaldaqlallkaa 737
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2044 -LKEKTDRCSELLLSKEQLQRDIQERN---EEIEKLECRVRELEQallasaepfpKVEDQKRSGAVEADPELSLEVQLQV 2119
Cdd:pfam12128 738 iAARRSGAKAELKALETWYKRDLASLGvdpDVIAKLKREIRTLER----------KIERIAVRRQEVLRYFDWYQETWLQ 807
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2120 ERDatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGF 2189
Cdd:pfam12128 808 RRP---RLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2973-3308 |
1.43e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2973 TEKSSQelldcSMQQKQSLEMQLEL--SSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRL----KEL 3046
Cdd:pfam15921 284 TEKASS-----ARSQANSIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3047 EAFRSEVKEKTDEIHFLSDTLAR--EQKNSLELQWALEKEK-ARSGHHEGREKEELEDLKFSLEDqkrRNTQLNLLLEQQ 3123
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQnKRLWDRDTGNSITIDHLRRELDD---RNMEVQRLEALL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3124 KQLLNESQQKIESqkmlhdaQLSEEQGRNLGLQAlLESEQVRIQEMKSTLDK-ERELYAQLQSREDGGQPPPALPSEdlL 3202
Cdd:pfam15921 436 KAMKSECQGQMER-------QMAAIQGKNESLEK-VSSLTAQLESTKEMLRKvVEELTAKKMTLESSERTVSDLTAS--L 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3203 KELQKQLEEKHSRIVELLSETEkYKLDSLQTRqqmeKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQEKRQQ 3282
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVD-LKLQELQHL----KNEGDHLRNVQTECEAL---KLQMAEKDKVIEILRQQIENMTQL 577
|
330 340
....*....|....*....|....*.
gi 568932676 3283 VYkldlEGKRLQGLMQeFQKQELEPE 3308
Cdd:pfam15921 578 VG----QHGRTAGAMQ-VEKAQLEKE 598
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
291-727 |
1.47e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 291 KDRKIENLNAKE---IQEKQALIDELNTRVVEEEKKTVELKNKVTTADEllggLHEQLTQRNQEIQSLKLELGNSQQNER 367
Cdd:COG5022 848 IQKFGRSLKAKKrfsLLKKETIYLQSAQRVELAERQLQELKIDVKSISS----LKLVNLELESEIIELKKSLSSDLIENL 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 368 KC-SEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYgkqivQMKQELINQHMSQIEELKsQH 446
Cdd:COG5022 924 EFkTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLL-----KKSTILVREGNKANSELK-NF 997
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 447 KREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGvvlgeksaLQSQSNDLLEEVRFLREQVqKA 526
Cdd:COG5022 998 KKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKP--------LQKLKGLLLLENNQLQARY-KA 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 527 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNyKIKLEMLekeKNAVLDRMAES---------- 596
Cdd:COG5022 1069 LKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ-FIVAQMI---KLNLLQEISKFlsqlvntlep 1144
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 597 -----QEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYKQQIDGLQNEMNrKMESMQCETDNL---- 667
Cdd:COG5022 1145 vfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELI-ALFSKIFSGWPRgdkl 1223
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 668 ---------ITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILK-QEEKEKGTLEQEVQEL 727
Cdd:COG5022 1224 kklisegwvPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKlEEEVLPATINSLLQYI 1293
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1937-2175 |
1.47e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1937 QAEKVrGDLQKQVKALEIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 2013
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2014 QKLE--HQLKAVPRIQP------VSEHQAREvEQLTNHLKEKTDRCSELLLSKEQLQRDIQ---------ERNEEIEK-- 2074
Cdd:COG3096 420 QALEkaRALCGLPDLTPenaedyLAAFRAKE-QQATEEVLELEQKLSVADAARRQFEKAYElvckiagevERSQAWQTar 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2075 -LECRVRELeQALLASAEPFpkvedqkrsGAVEADPELSLEVQLQVERDATDRKQK---------EITNLEEQLEQFREE 2144
Cdd:COG3096 499 eLLRRYRSQ-QALAQRLQQL---------RAQLAELEQRLRQQQNAERLLEEFCQRigqqldaaeELEELLAELEAQLEE 568
|
250 260 270
....*....|....*....|....*....|.
gi 568932676 2145 LENKNDEVQELLMQLEIQRKESTTRLQELQQ 2175
Cdd:COG3096 569 LEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
120-607 |
1.77e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 120 LREEEFSLDDSSSEQGAQssqtcLQMVEKELAEKQHDIEELTQE---LEEMRASFGTEGLKQLQEFEAAIKQRDGIITQL 196
Cdd:pfam15921 333 LREAKRMYEDKIEELEKQ-----LVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRD 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 197 TAN---LQQARREKDDTMVEF--LELTEQSQKLQIQFQHLQANETLQ--NSTLSRTA--TDLLQAKRQIFTQQQQLQDYQ 267
Cdd:pfam15921 408 TGNsitIDHLRRELDDRNMEVqrLEALLKAMKSECQGQMERQMAAIQgkNESLEKVSslTAQLESTKEMLRKVVEELTAK 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 268 K-----KEEDLQAQISFLQEKLRAFE-----MEKDRKIENLNAKEIQE----------KQALIDELNTRVVEEEKKTVEL 327
Cdd:pfam15921 488 KmtlesSERTVSDLTASLQEKERAIEatnaeITKLRSRVDLKLQELQHlknegdhlrnVQTECEALKLQMAEKDKVIEIL 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 328 KNKVTTADELLG-------GLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRR 400
Cdd:pfam15921 568 RQQIENMTQLVGqhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE--------LEKVKLVN 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 401 VEQETQRKLSHLQAELDEMYGKqiVQMKQELINQHMSQIEELKSQHKREMENtlksdtnaaiskeqvnlMNAAINELNVR 480
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNE--VKTSRNELNSLSEDYEVLKRNFRNKSEE-----------------METTTNKLKMQ 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 481 LQETHAQKEELKGELGVVLG--------------EKSALQSQSNDLLEEVRFLREQV---QKARQTIAEQENRLSEarkS 543
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEGsdghamkvamgmqkQITAKRGQIDALQSKIQFLEEAMtnaNKEKHFLKEEKNKLSQ---E 777
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932676 544 LSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLRTQ 607
Cdd:pfam15921 778 LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD-IIQRQEQESVRLKLQ 840
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
501-728 |
1.84e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 501 EKSALQS---QSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLstvEDLKAEivAASESRKELElkheaeitnyKI 577
Cdd:PRK11281 57 EDKLVQQdleQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAEL---EALKDD--NDEETRETLS----------TL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 578 KLEMLEKEKNAVLDRMAESQEA------ELERLRTQLlfshEEELSKLKEDLEvehRIN-IEKLKDNLGIHYKQQIDGLQ 650
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQP----ERAQAALYANSQ---RLQqIRNLLKGGKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 651 NEMNRKMESMqcetdNLITQQNQLILE-NSKLRDLqeclVNSKSEEMNLQINELQKEIEILkQE---EKEKGTLEQEVQE 726
Cdd:PRK11281 195 VLLQAEQALL-----NAQNDLQRKSLEgNTQLQDL----LQKQRDYLTARIQRLEHQLQLL-QEainSKRLTLSEKTVQE 264
|
..
gi 568932676 727 LQ 728
Cdd:PRK11281 265 AQ 266
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
476-624 |
1.84e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 476 ELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTV------ED 549
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnnkeyEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 550 LKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEEELSKLKEDLE 624
Cdd:COG1579 94 LQKEIESLKRRISDL----EDEILELMERIEELEEELAELEAELAE-LEAELEEKKAEL----DEELAELEAELE 159
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
146-813 |
1.87e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 146 VEKELAEKQHDIEELTQELEEMRASFGTEGLkQLQEFEAAIKQRDGIITQLTANLQQARREKDD----TMVEFLELTEQS 221
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQL-QADRHQEHIRARDSLIQSLATRLELDGFERGPfserQIKNFHTLVIER 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 222 QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIF--TQQQQLQDYQKKEEDLQAQISFLQ-------------EKLRA 286
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLgrTIELKKEILEKKQEELKFVIKELQqlegssdrileldQELRK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 287 FE-----MEKDRKIENLNAKEIQEKQALIDELNTRVVEEEK------------KTVELKNKVTTADEllgGLHEQLTQRN 349
Cdd:TIGR00606 483 AErelskAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEmeqlnhhtttrtQMEMLTKDKMDKDE---QIRKIKSRHS 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 350 QEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSA--VRRVEQETQRKLSHLQAELDEMYGKQIVQM 427
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKnhINNELESKEEQLSSYEDKLFDVCGSQDEES 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 428 KQELINQHMSQIEELKSQ-------HKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQ-----------ETHAQKE 489
Cdd:TIGR00606 640 DLERLKEEIEKSSKQRAMlagatavYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQsklrlapdklkSTESELK 719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 490 ELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTvedlkaeIVAASESRKELelkhE 569
Cdd:TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-------IMPEEESAKVC----L 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 570 AEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQllfsheeeLSKLKEDLEVEHRINIEKLKDN--LGIHYKQQID 647
Cdd:TIGR00606 789 TDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ--------VNQEKQEKQHELDTVVSKIELNrkLIQDQQEQIQ 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 648 GLQNEMNR-KMESMQCETDNLITQQ--NQLILENSKLRDLQECLVNSKSEEMNLQI---NELQKEIEILKQEEKEKGTLE 721
Cdd:TIGR00606 861 HLKSKTNElKSEKLQIGTNLQRRQQfeEQLVELSTEVQSLIREIKDAKEQDSPLETfleKDQQEKEELISSKETSNKKAQ 940
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 722 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQ--LDAENNILKEEKRvLEDKLKMYSPSEQEERSIAVDPSTSKSADsRWQK 799
Cdd:TIGR00606 941 DKVNDIKEKVKNIHGYMKDIENKIQDGKDDylKQKETELNTVNAQ-LEECEKHQEKINEDMRLMRQDIDTQKIQE-RWLQ 1018
|
730
....*....|....
gi 568932676 800 EVAMLRKETEDLQQ 813
Cdd:TIGR00606 1019 DNLTLRKRENELKE 1032
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2949-3112 |
2.04e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2949 LLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQ---LSSEKMVVAELKSEL 3025
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAElerLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3026 AQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTL-AREQKNSLELQWALEKEKARSGhHEGREKEELEDLKF 3104
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLEERFAAAL-GDAVERELRENLEE 773
|
....*...
gi 568932676 3105 SLEDQKRR 3112
Cdd:COG4913 774 RIDALRAR 781
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
593-771 |
2.07e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 593 MAESQEA--ELERLRTQLlFSHEEELSKLKEDLEvEHRINIEKLKDNLgIHYKQQIDGLQNEMNRKmesmqcetdnlitq 670
Cdd:COG1579 2 MPEDLRAllDLQELDSEL-DRLEHRLKELPAELA-ELEDELAALEARL-EAAKTELEDLEKEIKRL-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 671 QNQLILENSKLRDLQECLVNSKSEEmnlQINELQKEIEILKqeeKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCA 750
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNVRNNK---EYEALQKEIESLK---RRISDLEDEILELMERIEELEEELAELEAELAELEA 138
|
170 180
....*....|....*....|.
gi 568932676 751 QLDAENNILKEEKRVLEDKLK 771
Cdd:COG1579 139 ELEEKKAELDEELAELEAELE 159
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
127-353 |
2.15e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 127 LDDSSSEQGAQSSQTcLQMVEKELAEKQHDIEELTQELEEMRASFG--------TEGLKQLQEFEAAIKQRDGIITQLTA 198
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlseeaKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 199 NLQQARREKDDTMVEFLELTEQS--QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlqdyqkkeEDLQAQ 276
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI--------------AALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932676 277 ISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLgglhEQLTQRNQEIQ 353
Cdd:COG3206 307 LQQEAQRILA-SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEAR 378
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
680-747 |
2.42e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 43.52 E-value: 2.42e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 680 KLRDLQeclvnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 747
Cdd:PRK05431 36 ERRELQ-----TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2058-2173 |
2.61e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2058 KEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkvedqkrsgaveadpelslevqlqverdatDRKQKEITNLEEQ 2137
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL--------------------------------------DRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|....*.
gi 568932676 2138 LEQFREELENKNDEVQELLMQLEIQRKESTTRLQEL 2173
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2066-2324 |
2.62e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2066 QERNEEIEKLECRVRELEQAL--LASAEPFPKVEDQKRSGAVEADPElslEVQLQVERDAtDRKQKEITNLEEQLEQFRE 2143
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALdkLRSYLPKLNPLREEKKKVSVKSLE---ELIKDVEEEL-EKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2144 ELENKNDEVQEL--------LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTrdqpmlfgKFAQLIQE 2215
Cdd:PRK05771 115 EIKELEQEIERLepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY--------VYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2216 KEIEIDRLNE----QFIKLQQQLKLTTDnKVIEEQKEQIQDLETQIERLmseREHEKKQREEEVEQLTGVVEKLQQEVVS 2291
Cdd:PRK05771 187 KELSDEVEEElkklGFERLELEEEGTPS-ELIREIKEELEEIEKERESL---LEELKELAKKYLEELLALYEYLEIELER 262
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568932676 2292 TEQQREGART---------LPEDE-ESFKHQLDKVTAEKLVLE 2324
Cdd:PRK05771 263 AEALSKFLKTdktfaiegwVPEDRvKKLKELIDKATGGSAYVE 305
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
575-962 |
3.20e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 575 YKIKLEMLEKEKNAVLDRMaesqEAELERLRTQLLFSH---EEEL---SKLKEDLevehrinIEKLKDNLGIHYKQQIDG 648
Cdd:PTZ00108 986 YLVRLDLYKKRKEYLLGKL----ERELARLSNKVRFIKhviNGELvitNAKKKDL-------VKELKKLGYVRFKDIIKK 1054
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 649 lqNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECL-------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 721
Cdd:PTZ00108 1055 --KSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLsmpiwslTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLE 1132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 722 qevqELQLKTEQLEKQLKEKEDDLQE----KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRW 797
Cdd:PTZ00108 1133 ----DLDKFEEALEEQEEVEEKEIAKeqrlKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 798 QKEVAMLRKETEDLQQQclYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRAlee 877
Cdd:PTZ00108 1209 LDDKPDNKKSNSSGSDQ--EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQY--- 1283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 878 elLSKRGNPAAPKGKSSGIFPSETleIGEVVEKDTTELMEKLEVTKREKLELSEKVSgLSEQLKQthCTINSLSAEVRAL 957
Cdd:PTZ00108 1284 --SPPPPSKRPDGESNGGSKPSSP--TKKKVKKRLEGSLAALKKKKKSEKKTARKKK-SKTRVKQ--ASASQSSRLLRRP 1356
|
....*
gi 568932676 958 KQEKE 962
Cdd:PTZ00108 1357 RKKKS 1361
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1794-2187 |
3.82e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1794 ESFRQKQEATESLHcleelrERLQEESRAREQLAEELNKAESVIDGYSDEKTL--FERQIQEKTDIIEHLEQEVLCMNNR 1871
Cdd:COG4717 88 EEYAELQEELEELE------EELEELEAELEELREELEKLEKLLQLLPLYQELeaLEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1872 LQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEV------QCQAEKVRGDL 1945
Cdd:COG4717 162 EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEleeeleQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1946 QKQVKALEIDVE--------EQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQ-EIQKL 2016
Cdd:COG4717 242 EERLKEARLLLLiaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEElEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2017 EHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRcsellLSKEQLQRDIQERNEEIEKLecrvreLEQALLASAEPFPKV 2096
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELLRE-----AEELEEELQLEELEQEIAAL------LAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2097 EDQKRSGAVEADPELSLEVQLQVERDATDRKQKEIT--NLEEQLEQFREELENKNDEVQELLMQL-----EIQRKESTTR 2169
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELaeleaELEQLEEDGE 470
|
410
....*....|....*...
gi 568932676 2170 LQELQQENRLFKDEIEKL 2187
Cdd:COG4717 471 LAELLQELEELKAELREL 488
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
538-820 |
3.82e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 538 SEARKSLSTVEDLKAEIVAASEsRKELELKHEAEITNYKIKLEMLEKeknavldrmAESQEAELERLRTQLlfshEEELS 617
Cdd:PRK11281 29 AASNGDLPTEADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDK---------IDRQKEETEQLKQQL----AQAPA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 618 KLKEDLEvehriNIEKLKDNLGIHYKQQIDGLQNemnRKMESMQCET-DNLITQQNQLILENSKLRDLQ--------ECL 688
Cdd:PRK11281 95 KLRQAQA-----ELEALKDDNDEETRETLSTLSL---RQLESRLAQTlDQLQNAQNDLAEYNSQLVSLQtqperaqaALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 689 VNSK-SEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQ--------LKEKEDDLQEKCAQLDAENNIL 759
Cdd:PRK11281 167 ANSQrLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEgntqlqdlLQKQRDYLTARIQRLEHQLQLL 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 760 KE---EKRVLEdklkmyspSEQE-ERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNE 820
Cdd:PRK11281 247 QEainSKRLTL--------SEKTvQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2986-3215 |
3.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2986 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSD 3065
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3066 TLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNE---SQQKIESQKMLHD 3142
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAElaaLRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932676 3143 AQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEEKHSR 3215
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE--------LEALIARLEAEAAAAAER 242
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
2134-2288 |
4.03e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.31 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2134 LEEQLEQFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKEsdsvstrdqpmlfgKFA 2210
Cdd:smart00787 149 LDENLEGLKEDYKLLMKELELLnsiKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE--------------KLK 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 2211 QLIQEKEIEIDRLNEQfiklqqQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQE 2288
Cdd:smart00787 215 KLLQEIMIKVKKLEEL------EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3096-3282 |
4.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3096 KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKmlhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDK 3175
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3176 ERELYAQL--QSREDGGQPPPA--LPSEDL-----------------------LKELQKQLEEKHSRIVELLSETEKYKL 3228
Cdd:COG4942 102 QKEELAELlrALYRLGRQPPLAllLSPEDFldavrrlqylkylaparreqaeeLRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568932676 3229 DSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQ 3282
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3128-3301 |
4.13e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3128 NESQQKIESQKMLHDAQLSEEQGrNLGLQALLESEQvRIQEMKSTLDKERELYAQLQSR-EDGGQPPPALPSEDLLKELQ 3206
Cdd:COG3206 192 EEAEAALEEFRQKNGLVDLSEEA-KLLLQQLSELES-QLAEARAELAEAEARLAALRAQlGSGPDALPELLQSPVIQQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3207 KQLEEKHSRIVELLSeteKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKL 3286
Cdd:COG3206 270 AQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
170
....*....|....*
gi 568932676 3287 DLEGKRLQGLMQEFQ 3301
Cdd:COG3206 347 PELEAELRRLEREVE 361
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
403-631 |
4.53e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 403 QETQRKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKSQHKReMENTLKSDTNAA-----IS-----KEQVNLM 470
Cdd:COG4913 606 FDNRAKLAALEAELAEL-EEELAEAEERLeaLEAELDALQERREALQR-LAEYSWDEIDVAsaereIAeleaeLERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 471 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ-----ENRLSEARKSLS 545
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElrallEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 546 T---VEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQeAELERLRTQLLFSHEEELSKLKED 622
Cdd:COG4913 764 ErelRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYL-ALLDRLEEDGLPEYEERFKELLNE 842
|
....*....
gi 568932676 623 LEVEHRINI 631
Cdd:COG4913 843 NSIEFVADL 851
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1957-2333 |
4.61e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1957 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKlEHQLKAVPRIQPVSEHQARE 2036
Cdd:pfam09731 44 EEVVLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVA-EEEKEATKDAAEAKAQLPKS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2037 VEQLTNHLKEKTdrcSELLLSKEQLQRDIQE-RNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAvEADPELSLEV 2115
Cdd:pfam09731 123 EQEKEKALEEVL---KEAISKAESATAVAKEaKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKA-EALAEKLKEV 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2116 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEllmqlEIQRKESTTRLQELQQENR-LFKDEIEKLgfaMKES 2194
Cdd:pfam09731 199 INLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEK-----AQSLAKLVDQYKELVASERiVFQQELVSI---FPDI 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2195 DSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDnKVIEEQKEQIQDL-ETQIERLMSEREHEKKQREE 2273
Cdd:pfam09731 271 IPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIE-RALEKQKEELDKLaEELSARLEEVRAADEAQLRL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2274 EVE--------------------QLTGVVEKLQQEVVSTEQ--QREGAR----TLPEDEESFKHQLDKVTAEKLVLEQQV 2327
Cdd:pfam09731 350 EFErereeiresyeeklrtelerQAEAHEEHLKDVLVEQEIelQREFLQdikeKVEEERAGRLLKLNELLANLKGLEKAT 429
|
....*.
gi 568932676 2328 ETTNQV 2333
Cdd:pfam09731 430 SSHSEV 435
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
656-762 |
4.86e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 656 KMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLE 735
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 568932676 736 KQLKEKEDDLQEKCAQLDAENNILKEE 762
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
370-577 |
4.98e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 370 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRkLSHLQAELDEmygkqiVQMKQELINQHMSQIEELKSQHK 447
Cdd:COG3206 181 EEQLPELRKELEEAEAAleEFRQKNGLVDLSEEAKLLLQQ-LSELESQLAE------ARAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 448 REMENTLKSDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE-KSALQSQSNDLLEEVRFLREQVQKA 526
Cdd:COG3206 254 DALPELLQSPVIQQL-RAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILASLEAELEALQAREASL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568932676 527 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASE-------SRKELELKHEAEITNYKI 577
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRRLEREVEVARElyesllqRLEEARLAEALTVGNVRV 390
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3048-3281 |
5.43e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3048 AFRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRntqlnllleqqkqlL 3127
Cdd:PTZ00121 1271 AIKAEEARKADELK-----KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--------------A 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3128 NESQQKIESQKMLHDAQLSEEQGRNLGLQAllESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpsEDLLKELQK 3207
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKAEE-----------KKKADEAKK 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932676 3208 QLEEKHSRIVELL-SETEKYKLDSLqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3281
Cdd:PTZ00121 1399 KAEEDKKKADELKkAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
450-786 |
5.64e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 450 MENTLKSdtnaaiSKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDL---LEEVRFLREQVQKA 526
Cdd:PRK01156 188 LEEKLKS------SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELsslEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 527 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRT 606
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 607 QLLFSHEEELSKLKEDLEVEHR------INIEKLKDNLGiHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSK 680
Cdd:PRK01156 342 IKKKSRYDDLNNQILELEGYEMdynsylKSIESLKKKIE-EYSKNIERMSAFISEILKIQEIDPDAIKKELNEI---NVK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 681 LRDlqeclVNSKSEEMNLQINEL-QKEIEILKQEEKEKGTLEQEVQELQL---KTEQLEKQLKEKEDDLQEKCAQLDAEN 756
Cdd:PRK01156 418 LQD-----ISSKVSSLNQRIRALrENLDELSRNMEMLNGQSVCPVCGTTLgeeKSNHIINHYNEKKSRLEEKIREIEIEV 492
|
330 340 350
....*....|....*....|....*....|
gi 568932676 757 NILKEEKRVLEdKLKMYSPSEQEERSIAVD 786
Cdd:PRK01156 493 KDIDEKIVDLK-KRKEYLESEEINKSINEY 521
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2128-2305 |
5.64e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2128 QKEITNLEEQLEQFREELENKNDEVQELlmQLEIQRKESttrlqELQQENRLFKDEIEKLGFAM--KESDSVstrdqpml 2205
Cdd:COG1579 30 PAELAELEDELAALEARLEAAKTELEDL--EKEIKRLEL-----EIEEVEARIKKYEEQLGNVRnnKEYEAL-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2206 fgkfaqliqEKEIEIdrlneqfiklqQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKL 2285
Cdd:COG1579 95 ---------QKEIES-----------LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170 180
....*....|....*....|.
gi 568932676 2286 QQEVVSTEQQREGAR-TLPED 2305
Cdd:COG1579 155 EAELEELEAEREELAaKIPPE 175
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
143-572 |
6.55e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 143 LQMVEKELAEKQhdIEELTQELEEMRASfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQ 222
Cdd:PRK03918 374 LERLKKRLTGLT--PEKLEKELEELEKA-KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 223 KlqiqfqHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLqEKLRAFEmekdRKIENLNAKE 302
Cdd:PRK03918 451 K------ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKELE----EKLKKYNLEE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 303 IQEKQALIDELNTRVVEEEKKTVELKNKVttadELLGGLHEQLTQRNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVE 381
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 382 ELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEmygkqivqmKQELINQHMSQIEELKSQhkrementlksdtnaa 461
Cdd:PRK03918 596 ELEP--FYNEYLELKDAEKELEREEKELKKLEEELDK---------AFEELAETEKRLEELRKE---------------- 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 462 iskeqvnlmnaaINELNVRL-QETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEA 540
Cdd:PRK03918 649 ------------LEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
410 420 430
....*....|....*....|....*....|..
gi 568932676 541 RKSLSTVEDLKAEIVAASESRKELELKHEAEI 572
Cdd:PRK03918 717 EKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1921-2073 |
6.61e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1921 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALeIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAi 2000
Cdd:PRK12704 60 LEAKEEIHKLRNEFEKELRERRNELQKLEKRL-LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI- 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932676 2001 dreherdvfQQEIQKLEhqlkavpRIQPVSEHQARevEQLTNHLKEKtdrcselllSKEQLQRDIQERNEEIE 2073
Cdd:PRK12704 138 ---------EEQLQELE-------RISGLTAEEAK--EILLEKVEEE---------ARHEAAVLIKEIEEEAK 183
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
432-607 |
7.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 432 INQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKsalqsQSND 511
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-----EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 512 LLEEVRFLREQVQKARQTIAEQENRLSEARKslsTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLD 591
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEE---ELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
170
....*....|....*.
gi 568932676 592 RMAESQEAELERLRTQ 607
Cdd:COG1579 171 KIPPELLALYERIRKR 186
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
281-602 |
8.56e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 281 QEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVelknkvttadelLGGLHEQLT-QRNQEIQSLKLEl 359
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAA------------IYAEQERMAmERERELERIRQE- 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 360 GNSQQNERKCSEEIK---ELMRTVEELQ-KRNLKDSWL--ETSAVRRV---EQETQRKLSHLQAELDemygkqivQMKQE 430
Cdd:pfam17380 357 ERKRELERIRQEEIAmeiSRMRELERLQmERQQKNERVrqELEAARKVkilEEERQRKIQQQKVEME--------QIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 431 LINQHMSQIEELKSQHKREMENTLKSDTNaaiSKEQVNlmnaainelnvRLQETHAQKEELKGELGVVLGEKSALQSQSN 510
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQE---RQQQVE-----------RLRQQEEERKRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 511 DLLEevrflrEQVQKARQTIAEQENRLSEARKSLSTVEDLKAE----IVAASESRKELELKHEAEI-------TNYKIKL 579
Cdd:pfam17380 495 KILE------KELEERKQAMIEEERKRKLLEKEMEERQKAIYEeerrREAEEERRKQQEMEERRRIqeqmrkaTEERSRL 568
|
330 340
....*....|....*....|...
gi 568932676 580 EMLEKEKNaVLDRMAESQEAELE 602
Cdd:pfam17380 569 EAMERERE-MMRQIVESEKARAE 590
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1540-1991 |
8.67e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 8.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1540 RQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREdQEQLQEEIKRLNEQLAQDGHDDQEVEEQTLKDKTLE 1619
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1620 RSPEDALLDRNLSNERyALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATtcape 1699
Cdd:COG1196 431 AELEEEEEEEEEALEE-AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE----- 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1700 dcaramdesiPSYPGTAIATHDSIWSKVTEEGAELSQRLVRsgfAGPVIDPENEELMLNI----SSRLQAAVEKLLEAIS 1775
Cdd:COG1196 505 ----------GFLEGVKAALLLAGLRGLAGAVAVLIGVEAA---YEAALEAALAAALQNIvvedDEVAAAAIEYLKAAKA 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1776 ETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQ---IQ 1852
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLrevTL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 1853 EKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpveqrpIDAAAGAARGAEFLQETEKLMKEKL 1932
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL-------LAEEEEERELAEAEEERLEEELEEE 724
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 1933 EVQCQAEKVRGDLQKQVKALEIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKM 1991
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEA----LEELPEPPDLEELERELERLEREIEAL 779
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
2065-2286 |
9.04e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 9.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2065 IQERNEEIEKLECRVRELEQallasaepfpKVEDQKRSgaveadpelsLEVQLQVERDATDRKQKEITNLEEQLEQFREE 2144
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQ----------QIKTYNKN----------IEEQRKKNGENIARKQNKYDELVEEAKTIKAE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2145 LENKNDEVQELLMQLEiqrkESTTRLQELQQENRLFKDEIEKLGFAMK---ESDSVST-----RDQPMLFGKFAQLIQEK 2216
Cdd:PHA02562 236 IEELTDELLNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyeKGGVCPTctqqiSEGPDRITKIKDKLKEL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 2217 EIEIDRLNEQFIKLQ--------QQLKLTTDNKVIEEQKEQIQ-------DLETQIERLMSEREHEKKQREEEVEQLTGV 2281
Cdd:PHA02562 312 QHSLEKLDTAIDELEeimdefneQSKKLLELKNKISTNKQSLItlvdkakKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
....*
gi 568932676 2282 VEKLQ 2286
Cdd:PHA02562 392 VKTKS 396
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
91-517 |
9.41e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 91 SEISTTADECSSEINGCN-SVMKPRKPTDPLREEEFSLDDSSSE--QGAQSSQTCLQMVEKELAEKQHDIEELTQELEEM 167
Cdd:PRK02224 317 EELEDRDEELRDRLEECRvAAQAHNEEAESLREDADDLEERAEElrEEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 168 RASFG--TEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSqKLQIQFQHLQANETLQNSTLSRT 245
Cdd:PRK02224 397 RERFGdaPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAG-KCPECGQPVEGSPHVETIEEDRE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 246 ATDLLQAKR-QIFTQQQQLQDYQKKEEDLQ---AQISFLQEKLRAFEMEKDRKIENLNAKE--IQEKQALIDELNTRVVE 319
Cdd:PRK02224 476 RVEELEAELeDLEEEVEEVEERLERAEDLVeaeDRIERLEERREDLEELIAERRETIEEKRerAEELRERAAELEAEAEE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 320 EEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLklelgnsqQNERKCSEEIKELMRTVEELQKRnlKDSWLETSAVR 399
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAELNSKLAELKERIESL--------ERIRTLLAAIADAEDEIERLREK--REALAELNDER 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 400 RVEQETQR-KLSHLQAELDEMYGKQIVQMKQELiNQHMSQIEElKSQHKREMENTLKSDTNAAiskeqvnlmNAAINELN 478
Cdd:PRK02224 626 RERLAEKReRKRELEAEFDEARIEEAREDKERA-EEYLEQVEE-KLDELREERDDLQAEIGAV---------ENELEELE 694
|
410 420 430
....*....|....*....|....*....|....*....
gi 568932676 479 vRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVR 517
Cdd:PRK02224 695 -ELRERREALENRVEALEALYDEAEELESMYGDLRAELR 732
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3192-3286 |
9.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 9.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 3192 PPPALPSEDLLKELQKQLEEKHSRIVEL---LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSK 3268
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELekeLAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90
....*....|....*...
gi 568932676 3269 VEELQRQLQEKRQQVYKL 3286
Cdd:COG4942 92 IAELRAELEAQKEELAEL 109
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
533-942 |
9.86e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 9.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 533 QENRLSEARKSLSTVEDLKAEIVAASESRKELElkheAEITNykiklEMLEKEKNAVLDRMAESQEAELERLRTQLLfsh 612
Cdd:PLN03229 424 REAVKTPVRELEGEVEKLKEQILKAKESSSKPS----ELALN-----EMIEKLKKEIDLEYTEAVIAMGLQERLENL--- 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 613 EEELSKLKEDLEVEHRINIEKlkdnlgihykqqIDGLQNEMNRKMESMQCETDnlITQQNQLILENSKLRDLQEclVNSK 692
Cdd:PLN03229 492 REEFSKANSQDQLMHPVLMEK------------IEKLKDEFNKRLSRAPNYLS--LKYKLDMLNEFSRAKALSE--KKSK 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 693 SEEMNLQINELQKEIeILKQEEKEK-GTLEQEVQELQLKTE-QLEKQLKEKeddlqekcaQLDAENNILKEEKRVLEDKl 770
Cdd:PLN03229 556 AEKLKAEINKKFKEV-MDRPEIKEKmEALKAEVASSGASSGdELDDDLKEK---------VEKMKKEIELELAGVLKSM- 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 771 kmyspseqeerSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQclyLNEEIEKQRNTFAFAEKnfevnYQELQREYTcl 850
Cdd:PLN03229 625 -----------GLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEE---INKKIERVIRSSDLKSK-----IELLKLEVA-- 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 851 lkirddlEATQTKQALEYEsKLRALEEELLSKrgnpaapkgkssgifpsetleIGEVVekDTTELMEKLEVTKREKLELS 930
Cdd:PLN03229 684 -------KASKTPDVTEKE-KIEALEQQIKQK---------------------IAEAL--NSSELKEKFEELEAELAAAR 732
|
410
....*....|..
gi 568932676 931 EKVSGLSEQLKQ 942
Cdd:PLN03229 733 ETAAESNGSLKN 744
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
380-762 |
9.95e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 9.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 380 VEELQKRNLKDSWLETSAVRRVEQETqrklshlqaeldEMYGKQIVQMKQ------ELINQHMsqIEELKSQHKREMent 453
Cdd:PLN03229 413 VDPERKVNMKKREAVKTPVRELEGEV------------EKLKEQILKAKEssskpsELALNEM--IEKLKKEIDLEY--- 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 454 lksdTNAAIS---KEQVNLMNAAINELNVRLQETHA----QKEELKGELGVVLGEKSALQSqsndLLEEVRFLREqvqka 526
Cdd:PLN03229 476 ----TEAVIAmglQERLENLREEFSKANSQDQLMHPvlmeKIEKLKDEFNKRLSRAPNYLS----LKYKLDMLNE----- 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 527 rqtiAEQENRLSEARkslSTVEDLKAEI---VAASESRKELELKHEAeitnYKIKLEMLEKEKNAVLDrmaESQEAELER 603
Cdd:PLN03229 543 ----FSRAKALSEKK---SKAEKLKAEInkkFKEVMDRPEIKEKMEA----LKAEVASSGASSGDELD---DDLKEKVEK 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932676 604 LRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDnLITQQNQLILENSKlrd 683
Cdd:PLN03229 609 MKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSD-LKSKIELLKLEVAK--- 684
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932676 684 lqeclvNSKSEEMnlqinELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLdaENNILKEE 762
Cdd:PLN03229 685 ------ASKTPDV-----TEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAESNGSL--KNDDDKEE 750
|
|
| |
