|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3589-3670 |
4.51e-21 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 89.57 E-value: 4.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3589 KYLRASSFRKALIYQKKYLLLLLGGFQECEDVTLGVLARMGGHLALKDSKtitnhPKAFSRFRSAVRVSIAISRMKFLVR 3668
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS-----RKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 568932674 3669 RW 3670
Cdd:pfam10495 76 EW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
138-946 |
5.00e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.96 E-value: 5.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 138 DIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANE 217
Cdd:TIGR02168 233 RLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 218 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKdrkiENLNAKeIQEKQALIDELNT 297
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESR-LEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 298 RVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNE--RKCSEEIKELMRTVEELQKRNLKDSWL 375
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 376 ETS--AVRRVEQETQRKLSHLQAELDEM-----------YGKQIVQMKQELINQHMSQIEEL---KSQHKREMENTLKSD 439
Cdd:TIGR02168 467 REEleEAEQALDAAERELAQLQARLDSLerlqenlegfsEGVKALLKNQSGLSGILGVLSELisvDEGYEAAIEAALGGR 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 440 TNAAISK------------EQVNLMNAAINELNV-RLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQ 506
Cdd:TIGR02168 547 LQAVVVEnlnaakkaiaflKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 507 KArQTIAEQENRLSEARKSLSTVEdLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 586
Cdd:TIGR02168 627 VV-DDLDNALELAKKLRPGYRIVT-LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 587 RTQLlfsheEELSKLKEDLEVEhrinieklkdnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDl 666
Cdd:TIGR02168 704 RKEL-----EELEEELEQLRKE----------------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA- 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 667 qeclvnskseemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAenniLKEEKR 746
Cdd:TIGR02168 762 --------------EIEELEERLEEAEEELAE---AEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAA 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 747 VLEDKLkmyspsEQEERSIAvdpstsksadsRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 826
Cdd:TIGR02168 821 NLRERL------ESLERRIA-----------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 827 REYTCLLKIRDDLEATQTKQAlEYESKLRALEEELLSKRGNPAAPKGKSSGIfpseTLEIGEVVEKdtteLMEKLEVTKR 906
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQER----LSEEYSLTLE 954
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 568932674 907 EKLELSEKVSGLSEQLKQthctinslsaEVRALKQEKEQL 946
Cdd:TIGR02168 955 EAEALENKIEDDEEEARR----------RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1853-2515 |
7.82e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 7.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPV 1932
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1933 EQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEK---NAELTDLRQQ 2009
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2010 SQALEKQLEKMRKFLDEQAIDR-EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKE 2088
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2089 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaVEADPELSLEVQLQ-------VERDATDR------ 2155
Cdd:TIGR02168 489 ARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS---VDEGYEAAIEAALGgrlqavvVENLNAAKkaiafl 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2156 KQKEI---------TNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQ----------ELQQENRLFKDEIEKL 2216
Cdd:TIGR02168 566 KQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2217 GFAMKESDSVsTRDQPMLFG--KFAQLIQEKEIEIDRLNEQFIKLQQQL--------KLTTDNKVIEEQKEQIQDLETQI 2286
Cdd:TIGR02168 646 RIVTLDGDLV-RPGGVITGGsaKTNSSILERRREIEELEEKIEELEEKIaelekalaELRKELEELEEELEQLRKELEEL 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2287 ERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKH----QLDKVTAEKLVLEQQVETTNQV 2362
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREA 804
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2363 MTHMNNVLKEINFKMDQITQSLCNLNKECASNE-ELPSLPKESVHMT------VHELGSDNLQPEDAPAQ--DVTKPLEK 2433
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATErRLEDLEEQIEELSedieslAAEIEELEELIEELESEleALLNERAS 884
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2434 QTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCREQTETIQ---EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQ 2510
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
....*
gi 568932674 2511 MEAAQ 2515
Cdd:TIGR02168 965 DDEEE 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
128-729 |
3.87e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 3.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 128 VEKELAEKQHDIEELTQELEEMRAsfgteglkQLQEFEAAIKQRDGIITQLTANLQQARRekddtmvEFLELTEQSQKLQ 207
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQA-------EEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 208 IQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIEnlnakEIQE 287
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-----ELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 288 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQK 367
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 368 RNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKE 447
Cdd:COG1196 457 EEEALL-ELLAELLEEAALLEAALAELLEELAEA--AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 448 QV------NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSE 521
Cdd:COG1196 534 AAyeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 522 ARKSLSTVEDLKAEIVAASESRKELELKHEAEITnyKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKL 601
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR--EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 602 KEDLEVEHRINIEKLKDnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvnSKSEEMNLQ 681
Cdd:COG1196 692 ELELEEALLAEEEEERE------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA----LEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 568932674 682 INELQKEIEILKQEEKEKGTL----EQEVQELQlktEQLEKqLKEKEDDLQE 729
Cdd:COG1196 762 LEELERELERLEREIEALGPVnllaIEEYEELE---ERYDF-LSEQREDLEE 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
250-955 |
4.99e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 4.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 250 KKEEDLQAQIS-----FLQEKLRAFEMEKDRkienlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH 324
Cdd:TIGR02168 220 AELRELELALLvlrleELREELEELQEELKE-----AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 325 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVRRVEQETQRKLSHLQAELDEMygK 404
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE--------ELAELEEKLEELKEELESLEAELEEL--E 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 405 QIVQMKQELINQHMSQIEELKSQhKREMENTLKSDTNaaiskeQVNLMNAAINELNVRLQETHAQKEELKGELgvVLGEK 484
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSK-VAQLELQIASLNN------EIERLEARLERLEDRRERLQQEIEELLKKL--EEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 485 SALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEaEITNYKIKLEML 564
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 565 EKEKNAVLDRMAESQEAElERLRTQLlfshEEELSKLKEDLEVE----HRINIEKLKDN---------LGIHYKQQIDGL 631
Cdd:TIGR02168 515 QSGLSGILGVLSELISVD-EGYEAAI----EAALGGRLQAVVVEnlnaAKKAIAFLKQNelgrvtflpLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 632 QNEMNRKMESMQCETDNLITQQNQL-------------------ILENSKLRDLQECLV-------------NSKSEEMN 679
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggviTGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 680 LQINELQKEIEilkqeekekgTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSE 759
Cdd:TIGR02168 670 SSILERRREIE----------ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 760 QEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVN---YQELQREYTCLLKIR 836
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 837 DDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFPSETLEigEVVEKDTTELMEKLEVTKREKLELSEKVS 916
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALLNERASLEEALALLRSELE 897
|
730 740 750
....*....|....*....|....*....|....*....
gi 568932674 917 GLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 955
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
125-637 |
8.28e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 8.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 125 LQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI-------KQRDGIITQLTANLQQARREKDDTMVEFL 197
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIarleerrRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 198 ELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKI 277
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 278 ENLNA--KEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEI 355
Cdd:COG1196 421 EELEEleEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 356 KELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVqmkQELINQHMSQIEELKSQHKREMEnT 435
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV---VEDDEVAAAAIEYLKAAKAGRAT-F 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 436 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 515
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 516 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLFSHE 595
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE-EELEEEALEEQLEAERE 735
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568932674 596 EELSKLKEDLEVEHRINIEKLKDNLGIH-YKQQIDGLQNEMNR 637
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1850-2357 |
9.08e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 9.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1850 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1929
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1930 GPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQ 2009
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2010 SQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAvpriqpvsehqAREVEQLTNHLKEKTDRCSELLLSKEQ 2089
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA-----------AEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2090 LQRDIQERNEEIEKLEcRVRELEQALLASAEPFP--------KVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEIT 2161
Cdd:COG1196 475 LEAALAELLEELAEAA-ARLLLLLEAEADYEGFLegvkaallLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2162 NLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQE----------LQQENRLFKDEIEKLGFAMKESDSVSTRDQ 2231
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2232 PMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVV 2311
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568932674 2312 EKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2357
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
162-750 |
2.13e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 2.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 162 QEFEAAIKQRDGIITQLTANLQQARREkddtmveflELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQ 241
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELE---------ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 242 QQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLN--AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL 319
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 320 LGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELD 399
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 400 EmygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELN-----VRLQETHAQKEELK 474
Cdd:COG1196 447 A---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 475 GELGVVLGEKSALQSQSNDLLEEVrfLREQVQKARQTIAEQENRLSEARKSLSTVEDL-KAEIVAASESRKELELKHEAE 553
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLdKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 554 ITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEH----RINIEKLKDNLGIHYKQQID 629
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 630 GLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLV----NSKSEEMNLQINELQKEIEILKQEEKEKGTLEQE 705
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEealeEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 706 VQELQLKTEQLEKQLKEKE----------DDLQEKCAQLDAENNILKEEKRVLED 750
Cdd:COG1196 762 LEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1984-2314 |
2.48e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1984 DVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrehERDVFQQEIQKLEHQLKavpriqpvSEHQA 2063
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL------SRQISALRKDLARLEAE--------VEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2064 REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAdpeLSLE 2143
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2144 VQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEV---QELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAM 2220
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2221 KESDSVstrdqpmlfgkfaqlIQEKEIEIDRLNEQFIKLQ---QQLKLTTDNkVIEEQKEQIQDLETQIERLMSEREHEK 2297
Cdd:TIGR02168 904 RELESK---------------RSELRRELEELREKLAQLElrlEGLEVRIDN-LQERLSEEYSLTLEEAEALENKIEDDE 967
|
330
....*....|....*..
gi 568932674 2298 KQREEEVEQLTGVVEKL 2314
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1951-2327 |
4.86e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 4.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1951 QETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEeQVSRFIEL-EQEKNAELTDLRQQSQALEKQLEKmrkfLDEQAI 2029
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELkAELRELELALLVLRLEELREELEE----LQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2030 DREHERDVFQQEIQKLEHQLKAVPRIQPVSEhqaREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVR 2109
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2110 ELEQALLASAEPFPKVEDQKrsgaveadpeLSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLE 2189
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKL----------EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2190 IQRKEST---TRLQELQQENRLFKDEIEKLGFAMKESDsvstrdqpmlFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLt 2266
Cdd:TIGR02168 397 SLNNEIErleARLERLEDRRERLQQEIEELLKKLEEAE----------LKELQAELEELEEELEELQEELERLEEALEE- 465
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 2267 tdnkvIEEQKEQIQdletQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREG 2327
Cdd:TIGR02168 466 -----LREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
129-954 |
8.52e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 8.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 129 EKELAEKQHDIEELTQELEemrasfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 208
Cdd:TIGR02169 206 EREKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 209 QFQHLQANETLQ-NSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEmekdrkienlnaKEIQE 287
Cdd:TIGR02169 280 KIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE------------REIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 288 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEEL-- 365
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLna 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 366 ------QKRNLKDSWLETSAVRRVEQEtqRKLSHLQAELDEmYGKQIVQMKQELinqhmSQIEELKSQHKREMEntlKSD 439
Cdd:TIGR02169 428 aiagieAKINELEEEKEDKALEIKKQE--WKLEQLAADLSK-YEQELYDLKEEY-----DRVEKELSKLQRELA---EAE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 440 TNAAISKEQVNLMNAAINELNVRLQETHAqkeeLKGELGVVlGEK--SALQSQSNDLLEEVRFLREQVQKARQTIAEQEN 517
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQGVHG----TVAQLGSV-GERyaTAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 518 rlsEARKSLSTVEDLKAEivaasesRKELELKHEAEITNYKIKL-EMLEKEKNA---------VLDRMAESQ-------- 579
Cdd:TIGR02169 572 ---AGRATFLPLNKMRDE-------RRDLSILSEDGVIGFAVDLvEFDPKYEPAfkyvfgdtlVVEDIEAARrlmgkyrm 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 580 ---EAEL-----------ERLRTQLLFSHEEElsklKEDLEVEHRinIEKLKDNLGIhYKQQIDGLQNEMNRKMESMQCE 645
Cdd:TIGR02169 642 vtlEGELfeksgamtggsRAPRGGILFSRSEP----AELQRLRER--LEGLKRELSS-LQSELRRIENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 646 TDNLITQQNQLILENSKLRDLQECLVNSKSeemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKED 725
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEE-----DLSSLEQEIENVKSELKE---LEARIEELEEDLHKLEEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 726 DL-QEKCAQLDAENNILKEEKrvledklkmyspSEQEERSIAVDPSTSKSadsrwQKEVAMLRKETEDLQQQCLYLN--- 801
Cdd:TIGR02169 787 RLsHSRIPEIQAELSKLEEEV------------SRIEARLREIEQKLNRL-----TLEKEYLEKEIQELQEQRIDLKeqi 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 802 -------EEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAAPKGK 874
Cdd:TIGR02169 850 ksiekeiENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA----QLRELERKIEELEAQIEKKRKRLSELKAK 925
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 875 SSGIFpSETLEIGEVVEKDTTELMEK--LEVTKREKLELSEKVSGLS-------EQLKQTHCTINSLSAEVRALKQEKEQ 945
Cdd:TIGR02169 926 LEALE-EELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
....*....
gi 568932674 946 LLLRCGELE 954
Cdd:TIGR02169 1005 ILERIEEYE 1013
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
128-749 |
9.55e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 9.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 128 VEKELAEKQHDIEELTQELEEMRasfgteglKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 207
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 208 IQFQHLQA-----NETLQNST---------LSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEK 273
Cdd:TIGR02168 351 EELESLEAeleelEAELEELEsrleeleeqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 274 DRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKlelgNSQQNERKCSE 353
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE----RLQENLEGFSE 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 354 EIKELMrtveeLQKRNLKDSWLETSAVRRVEQETQRKLS-----HLQA---ELDEMYGKQIVQMKQELINQHM----SQI 421
Cdd:TIGR02168 507 GVKALL-----KNQSGLSGILGVLSELISVDEGYEAAIEaalggRLQAvvvENLNAAKKAIAFLKQNELGRVTflplDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 422 EELKSQhKREMENTLKSDTNAAISKEQVNLMNAAINELNVRL----------QETHAQKEELKGELGVVL-GE---KSAL 487
Cdd:TIGR02168 582 KGTEIQ-GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldNALELAKKLRPGYRIVTLdGDlvrPGGV 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 488 QSQSNDLLEEVRFLREQ-VQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEK 566
Cdd:TIGR02168 661 ITGGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 567 EKNAVLDRMAESQE--AELERLRTQLLFSHEEELSKLKEDLEVEHRIN--IEKLKDNLGIhYKQQIDGLQNEMNRKMESM 642
Cdd:TIGR02168 741 EVEQLEERIAQLSKelTELEAEIEELEERLEEAEEELAEAEAEIEELEaqIEQLKEELKA-LREALDELRAELTLLNEEA 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 643 QCETDNLITQQNQLILENSKLRDLQECLVNSKS--EEMNLQINELQKEIEILKQE----EKEKGTLEQEVQELQLKTEQL 716
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEdiESLAAEIEELEELIEELESElealLNERASLEEALALLRSELEEL 899
|
650 660 670
....*....|....*....|....*....|...
gi 568932674 717 EKQLKEKEDDLQEKCAQLDAENNILKEEKRVLE 749
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
110-916 |
2.16e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 2.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 110 DDSSSEQGAQSSQTCLQMVEKELAEKQHDIEElTQELEEMRASFGTEGLKQLQEFEAAIKQRDgiitqlTANLQQARREK 189
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAARKAEE------ERKAEEARKAE 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 190 DDTMVEFLELTEQSQKlqiQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRaf 269
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKK---DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK-- 1296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 270 EMEKDRKIENLNAKEIQEKQAliDELNTRVVEEEKKTVELKNKV---TTADELLGGLHEQLTQRNQEIQSLKLELGNSQQ 346
Cdd:PTZ00121 1297 KAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAeeaKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 347 NERKCSEEIK---ELMRTVEELQKRNLKDSwLETSAVRRVEQEtQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEE 423
Cdd:PTZ00121 1375 EAKKKADAAKkkaEEKKKADEAKKKAEEDK-KKADELKKAAAA-KKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAK 1450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 424 LKSQHKREMENTLKSDTNAAISKEQVNLMNAA--INELNVRLQETHAQKEELKGelgvvlgeksalQSQSNDLLEEVRFL 501
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKK------------AAEAKKKADEAKKA 1518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 502 REQVQKARQTIAEQENRLSEARKSlstVEDLKAEIVAASESRKELELKHEAEitnykiKLEMLEKEKNAVLDRMAESQEA 581
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKA---EEKKKADELKKAEELKKAEEKKKAE------EAKKAEEDKNMALRKAEEAKKA 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 582 ELERLRTQLLFSHEEELSKLKE-DLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLITQQNQLILE 659
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEEKKKvEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 660 NSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEkcaqldaenn 739
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA---------- 1739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 740 ilKEEKRVLEDKLKmyspSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEiEKQRNTFAfaekNFE 819
Cdd:PTZ00121 1740 --EEDKKKAEEAKK----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD-KKIKDIFD----NFA 1808
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 820 vNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGI---FPSETleigEVVEKDTTE 896
Cdd:PTZ00121 1809 -NIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKeadFNKEK----DLKEDDEEE 1883
|
810 820
....*....|....*....|
gi 568932674 897 LMEKLEVTKREKLELSEKVS 916
Cdd:PTZ00121 1884 IEEADEIEKIDKDDIEREIP 1903
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1791-2500 |
2.18e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1791 RLQAAVEKLLEAISETNTQLEHAKvTQTELMrESFRQKQEATESLHCLEELRERLQEESRaREQLAEELNKAESVIDGYS 1870
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLE-RQAEKA-ERYKELKAELRELELALLVLRLEELREE-LEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1871 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEqrpiDAAAGAARGAEFL 1950
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE----AQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1951 QETEKLMKEKLEvqcQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKFLdeQ 2027
Cdd:TIGR02168 336 AEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERLEARL--E 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2028 AIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECR 2107
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2108 VRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVerDATDRKQKEITnLEEQLEQFREELENKNDEVQELLMQ 2187
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--DEGYEAAIEAA-LGGRLQAVVVENLNAAKKAIAFLKQ 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2188 LEIQRK----ESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIeiDRLNEQFIKLQQQL 2263
Cdd:TIGR02168 568 NELGRVtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDL--DNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2264 KLTTD------------------NKVIEEQKEQIQDLETQIERlMSEREHEKKQR----EEEVEQLTGVVEKLQQEVVST 2321
Cdd:TIGR02168 646 RIVTLdgdlvrpggvitggsaktNSSILERRREIEELEEKIEE-LEEKIAELEKAlaelRKELEELEEELEQLRKELEEL 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2322 EQQ----REGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEEL 2397
Cdd:TIGR02168 725 SRQisalRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2398 pslpKESVHMTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEaSRTQEIESLASSVGAKDVELTQCREQTETIQ 2477
Cdd:TIGR02168 805 ----LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE-ELSEDIESLAAEIEELEELIEELESELEALL 879
|
730 740
....*....|....*....|....*.
gi 568932674 2478 E---QAQSETDRLQKKLTDLQRSLEK 2500
Cdd:TIGR02168 880 NeraSLEEALALLRSELEELSEELRE 905
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1791-2318 |
4.39e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 4.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1870
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1871 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEagpvEQRPIDAAAGAARGAEFL 1950
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE----LLEALRAAAELAAQLEEL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1951 QETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDE--QA 2028
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEllEE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2029 IDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLK-----EKTDRCSELLLSKEQLQRDIQERNEEIEK 2103
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGveaayEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2104 LECRV--RELEQALLASAEPFPKVEDQKR-----------SGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQF 2170
Cdd:COG1196 566 LKAAKagRATFLPLDKIRARAALAAALARgaigaavdlvaSDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2171 REELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEID 2250
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2251 RLNEQFIKLQQQLKLT---------------TDNKVIEEQKEQIQDLETQIERL-----MSEREHE---------KKQR- 2300
Cdd:COG1196 726 LEEQLEAEREELLEELleeeelleeealeelPEPPDLEELERELERLEREIEALgpvnlLAIEEYEeleerydflSEQRe 805
|
570 580
....*....|....*....|
gi 568932674 2301 --EEEVEQLTGVVEKLQQEV 2318
Cdd:COG1196 806 dlEEARETLEEAIEEIDRET 825
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1791-2384 |
5.20e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 5.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1870
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1871 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELES----DQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARG 1946
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESrleeLEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1947 AEFLQETEKLMKEKLEVQcqAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDE 2026
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAE--LKELQAELEELEEELE-ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2027 QAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEH-------------------QAREVEQLT------NHLKEKTDRCS 2081
Cdd:TIGR02168 494 LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlQAVVVENLNaakkaiAFLKQNELGRV 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2082 ELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKV------------------------------------ 2125
Cdd:TIGR02168 574 TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalelakklrpgyrivtldgd 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2126 -----------EDQKRSGAVEADPELS--------LEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLM 2186
Cdd:TIGR02168 654 lvrpggvitggSAKTNSSILERRREIEeleekieeLEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2187 QLEIQRKESTT----------RLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPML------FGKFAQLIQEKEIEID 2250
Cdd:TIGR02168 734 DLARLEAEVEQleeriaqlskELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeeLKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2251 RLNEQFikLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGART 2330
Cdd:TIGR02168 814 LLNEEA--ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 568932674 2331 LPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSL 2384
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
112-859 |
6.08e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 6.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 112 SSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDD 191
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 192 TMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEM 271
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 272 EKDRKIEnlnakEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKC 351
Cdd:TIGR02169 407 ELDRLQE-----ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 352 SEEIKELMRTVEEL--QKRNLKDSWLETSAVRRVEQETQRKLSHLQAEL---DEMYGKQI----------VQMKQELINQ 416
Cdd:TIGR02169 482 EKELSKLQRELAEAeaQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvGERYATAIevaagnrlnnVVVEDDAVAK 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 417 hmSQIEELKSQHKREME----NTLKSDTN--AAISKEQVnlMNAAINELN----------------VRLQETHAQKE--- 471
Cdd:TIGR02169 562 --EAIELLKRRKAGRATflplNKMRDERRdlSILSEDGV--IGFAVDLVEfdpkyepafkyvfgdtLVVEDIEAARRlmg 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 472 -----ELKGEL----GVVLG---EKSALQSQSNDLLEEVRFLREQVQK-------ARQTIAEQENRLSEARKSLStveDL 532
Cdd:TIGR02169 638 kyrmvTLEGELfeksGAMTGgsrAPRGGILFSRSEPAELQRLRERLEGlkrelssLQSELRRIENRLDELSQELS---DA 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 533 KAEIVAASESRKELELKHEA---EITNYKIKLEMLEKEKNAVLDRMAESqEAELERLrtqllfshEEELSKLKEDLeveh 609
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKlkeRLEELEEDLSSLEQEIENVKSELKEL-EARIEEL--------EEDLHKLEEAL---- 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 610 riniEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNsKSEEMNLQINELQKEI 689
Cdd:TIGR02169 782 ----NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-QRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 690 EILKqeeKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNILKEEKRVLE---DKLKMYSPSEQEERSIA 766
Cdd:TIGR02169 857 ENLN---GKKEELEEELEELEAALRDLESRLG----DLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEAL 929
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 767 VDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeknfEVNYQELQrEYTCLLKIRDDLEATQTKQ 846
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE----------PVNMLAIQ-EYEEVLKRLDELKEKRAKL 998
|
810
....*....|...
gi 568932674 847 ALEYESKLRALEE 859
Cdd:TIGR02169 999 EEERKAILERIEE 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-842 |
1.16e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 174 IITQLTANLQQARREKDDTMvEFLELTEQSQKLQIQ-----FQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDY 248
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE-RYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 249 QKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQ 326
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARleQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 327 LTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQI 406
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 407 VQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQV-NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKS 485
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLeAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 486 ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRkelelkheaeitnykiklemLE 565
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK--------------------AG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 566 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLgihykqqiDGLQNEMNRKMESMQCE 645
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL--------VAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 646 TDNLITQQNQLILENSKLRDLQEclvNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKED 725
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 726 DLQEKCAQLDAENNILKEEkrvLEDKLKMYSPSEQEERSIAVDPSTsksadsrWQKEVAMLRKETEDLQqqclylneeie 805
Cdd:COG1196 722 EEEALEEQLEAEREELLEE---LLEEEELLEEEALEELPEPPDLEE-------LERELERLEREIEALG----------- 780
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 568932674 806 kqrntfafaeknfEVN------YQELQREYTCLLKIRDDLEAT 842
Cdd:COG1196 781 -------------PVNllaieeYEELEERYDFLSEQREDLEEA 810
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
419-956 |
9.24e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 9.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 419 SQIEELKSQHKREMENTLKSdtnaaiskeqvnlmnaaINELNVRLQETHAQKEEL---KGELGVVLGEKSALQSQSNDLL 495
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLRE-----------------INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 496 EEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRM 575
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 576 --AESQEAELERLRtQLLFSHEEELSKLKEDLEVEHRI-----NIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDN 648
Cdd:PRK03918 331 keLEEKEERLEELK-KKLKELEKRLEELEERHELYEEAkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 649 LITQQNQLILENSKLRDLQECLVNSKSE--EMNLQINELQKEiEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDD 726
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 727 LqEKCAQLDAENNILkEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQ--------KEVAMLRKETEDLQQQCL 798
Cdd:PRK03918 489 L-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEikslkkelEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 799 YLNEE---IEKQRNTFAF-AEKNFEVNYQELQ---REYTCLLKIRDDLEATQTKQALEyESKLRALEEELlskrgnpaap 871
Cdd:PRK03918 567 ELEEElaeLLKELEELGFeSVEELEERLKELEpfyNEYLELKDAEKELEREEKELKKL-EEELDKAFEEL---------- 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 872 kGKSSGIFPSETLEIGEVVEKDTTELMEKLEvtkREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCG 951
Cdd:PRK03918 636 -AETEKRLEELRKELEELEKKYSEEEYEELR---EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
....*
gi 568932674 952 ELELL 956
Cdd:PRK03918 712 ELEKL 716
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1786-2390 |
1.67e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1786 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEEsraREQLAEELNKAESV 1865
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE---LESLEAELEELEAE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1866 IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAAR 1945
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1946 gaeflQETEKLMKEKLEVQCQAEKVRGDLQKqvkaleidVEEQVSRFIELEQEKNAELTDLRQQSQALEKqLEKMRKFLD 2025
Cdd:TIGR02168 447 -----EELEELQEELERLEEALEELREELEE--------AEQALDAAERELAQLQARLDSLERLQENLEG-FSEGVKALL 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2026 EQAIDREHERDVFQQEIQ---KLEHQLKAV--PRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEE 2100
Cdd:TIGR02168 513 KNQSGLSGILGVLSELISvdeGYEAAIEAAlgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2101 IEKLECRVRELEQALLASAEPFPKV------------------EDQKRSGA----VEADPELSLEVQLQVERDATDR--- 2155
Cdd:TIGR02168 593 ILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalELAKKLRPgyriVTLDGDLVRPGGVITGGSAKTNssi 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2156 --KQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQpM 2233
Cdd:TIGR02168 673 leRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-Q 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2234 LFGKFAQLIQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQKEQIQDLETQIERLMSE------REHEKKQR------ 2300
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEaEIEELEAQIEQLKEELKALREALDELRAEltllneEAANLRERlesler 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2301 -----EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINF 2375
Cdd:TIGR02168 832 riaatERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES---ELEALLNERASLEEALALLRSELEELSEELRELES 908
|
650
....*....|....*
gi 568932674 2376 KMDQITQSLCNLNKE 2390
Cdd:TIGR02168 909 KRSELRRELEELREK 923
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3021-3356 |
1.70e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3021 EMQLELSSLRDRAAELQEQLSS--------EKmvVAELKSELAQAKLELG-----------TTLKAQHKRLK-ELEAFRS 3080
Cdd:COG1196 183 ATEENLERLEDILGELERQLEPlerqaekaER--YRELKEELKELEAELLllklreleaelEELEAELEELEaELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3081 EVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQ 3160
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3161 QKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEE 3240
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE-------------LAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3241 KHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3320
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350
....*....|....*....|....*....|....*.
gi 568932674 3321 RLQGLMQEFQKQELEPEEKPGSRGLVDQNLNEPATW 3356
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
91-827 |
2.11e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.30 E-value: 2.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 91 SEISTTADECSSEEEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQ 170
Cdd:pfam02463 289 KLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 171 RDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQK 250
Cdd:pfam02463 369 EQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 251 KEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEI--QEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLT 328
Cdd:pfam02463 449 EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQeqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 329 QRNQEIQSLKLELGNsqQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQ 408
Cdd:pfam02463 529 GRLGDLGVAVENYKV--AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 409 MKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLgEKSALQ 488
Cdd:pfam02463 607 QLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKA 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 489 SQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSL----STVEDLKAEIVAASESRKELELKHEAEITNYKIKLEML 564
Cdd:pfam02463 686 ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLadrvQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 565 EKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLK-DNLGIHYKQQIDGLQNEMNRKMESMQ 643
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEeEQLLIEQEEKIKEEELEELALELKEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 644 CETDNLITQQNQLILENSKLRDLqeclvNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEK 723
Cdd:pfam02463 846 QKLEKLAEEELERLEEEITKEEL-----LQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 724 EDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSAdsrwQKEVAMLRKETEDLQQQclYLNEE 803
Cdd:pfam02463 921 ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEEL----GKVNLMAIEEFEEKEER--YNKDE 994
|
730 740
....*....|....*....|....
gi 568932674 804 IEKQRNTFAFAEKNFEVNYQELQR 827
Cdd:pfam02463 995 LEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
237-753 |
3.61e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.20 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 237 QIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRK---IENLNAKEIQEKQAL--IDELNTRVVEEEKKTVELKN 311
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIqknIDKIKNKLLKLELLLsnLKKKIQKNKSLESQISELKK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 312 KVTTadellggLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELmrtveelqKRNLKDSWLETSAVRRVEQETQRKL 391
Cdd:TIGR04523 226 QNNQ-------LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI--------KKQLSEKQKELEQNNKKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 392 SHLQAELDEMYGkqivQMKQELINQHMSQIEELKSQhKREMENTLkSDTNAAIS--KEQVNLMNAAINELNVRLQETHAQ 469
Cdd:TIGR04523 291 NQLKSEISDLNN----QKEQDWNKELKSELKNQEKK-LEEIQNQI-SQNNKIISqlNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 470 KEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVE----DLKAEIVAASESRKE 545
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEkeieRLKETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 546 LElkheAEITNYKIKLEMLEKEKnavldrmaESQEAELERLrtqllfshEEELSKLKEDLEVEHRINIEKLKDNLGI-HY 624
Cdd:TIGR04523 445 LT----NQDSVKELIIKNLDNTR--------ESLETQLKVL--------SRSINKIKQNLEQKQKELKSKEKELKKLnEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 625 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRD-LQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 703
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 568932674 704 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
250-955 |
3.67e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.30 E-value: 3.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 250 KKEEDLQAQISFLQEKLRAFEMEKDrKIENLNAKEIQEKQALIDELNTRVVEEEK----KTVELKNKVTTADELLGGL-- 323
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEMQMERD-AMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMls 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 324 HEQLTQrnqEIQSLKLELgnsqqnERKCSEEIKElMRTVEELQKRNLKdswletSAVRRVEQETQRKLSHLQAEL----D 399
Cdd:pfam15921 182 HEGVLQ---EIRSILVDF------EEASGKKIYE-HDSMSTMHFRSLG------SAISKILRELDTEISYLKGRIfpveD 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 400 EMYG-KQIVQMKQELI-NQHMSQIEELKSQHKREMENTLKSDTNA-----------AISKEQVNLMNA-----------A 455
Cdd:pfam15921 246 QLEAlKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSArsqansiqsqlEIIQEQARNQNSmymrqlsdlesT 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 456 INELNVRLQET----HAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 531
Cdd:pfam15921 326 VSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 532 LK-AEIVAASESRKELELKHeAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLR-----TQLLFSHEEELSKLKEDL 605
Cdd:pfam15921 406 RDtGNSITIDHLRRELDDRN-MEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvsslTAQLESTKEMLRKVVEEL 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 606 EVEhRINIEKLKDNLgihykQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSE--EMNLQIN 683
Cdd:pfam15921 485 TAK-KMTLESSERTV-----SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceALKLQMA 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 684 ELQKEIEILKQEEKEK----GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKE-EKRVLE---DKLKMY 755
Cdd:pfam15921 559 EKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRElEARVSDlelEKVKLV 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 756 SPSEQEERSIavdpstsksadsrwqkevamlrketEDLQQQCLYLNEEIEKQRNTFafaeKNFEVNYQELQREYTcllKI 835
Cdd:pfam15921 639 NAGSERLRAV-------------------------KDIKQERDQLLNEVKTSRNEL----NSLSEDYEVLKRNFR---NK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 836 RDDLEATQTKQALEYESKLRALEEE---LLSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTELMEKLEVTKREKLE 910
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTrntLKSMEGSDGHAMKVAMGMQKQITAKRGQIdaLQSKIQFLEEAMTNANKEKHF 766
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 568932674 911 LSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 955
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
126-824 |
8.88e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.14 E-value: 8.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 126 QMVEKELAEKQHDIEELTQELEEmrasfgTEGLKQLQEFEAaikqRDGIItQLTANLQQARREKDdTMVEFLELTEQSQ- 204
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 205 ----KLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENL 280
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 281 NAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH----EQLTQRNQ-EIQSL--KLELGNSQQNERKCSE 353
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHqdriEQLISEHEvEITGLteKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 354 E-IKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDemygKQIVQMKQEL---------INQHMSQIEE 423
Cdd:pfam15921 302 EiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE----KQLVLANSELtearterdqFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 424 -----LKSQHKREMENTLKSDTNAAI------SKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSN 492
Cdd:pfam15921 378 qlqklLADLHKREKELSLEKEQNKRLwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 493 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLS----TVEDLKAEI-------------VAASESRKELELKHEAEIT 555
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLEsserTVSDLTASLqekeraieatnaeITKLRSRVDLKLQELQHLK 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 556 NYKIKLEMLEKEKNAVLDRMAESQEAeLERLR------TQLLFSHEEELSKLK-EDLEVEHRINIEKLKDNLGIHYKQQI 628
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKV-IEILRqqienmTQLVGQHGRTAGAMQvEKAQLEKEINDRRLELQEFKILKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 629 DGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNlQINELQKEIEILKQEEKEKGtleqevQE 708
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN-ELNSLSEDYEVLKRNFRNKS------EE 689
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 709 LQLKTEQLEKQLKEKEDDLQE----------------------------KCAQLDAENNILKEEKRVLEDKLKMYSPSEQ 760
Cdd:pfam15921 690 METTTNKLKMQLKSAQSELEQtrntlksmegsdghamkvamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKE 769
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932674 761 EERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQClyLNEEIEKQRNTFAFAEKNFEVNYQE 824
Cdd:pfam15921 770 EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV--ANMEVALDKASLQFAECQDIIQRQE 831
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
111-507 |
1.13e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 111 DSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRasfgteglKQLQEFEAAIKQRDGIITQLTANLQQARREKD 190
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR--------KELEELEEELEQLRKELEELSRQISALRKDLA 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 191 DTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlqdyqkkeEDLQAQISFLQEKLRAFE 270
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI--------------EELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 271 mekdrkienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERK 350
Cdd:TIGR02168 803 ------------EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 351 CSEEIKELM--RTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGkQIVQMKQELINQHMSQIEELKSQH 428
Cdd:TIGR02168 871 LESELEALLneRASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLSEEY 949
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 429 KREME----NTLKSDTNAAISKEQVNLMNAAINEL-NVRLqETHAQKEELKgelgvvlGEKSALQSQSNDLLEEVRFLRE 503
Cdd:TIGR02168 950 SLTLEeaeaLENKIEDDEEEARRRLKRLENKIKELgPVNL-AAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEE 1021
|
....
gi 568932674 504 QVQK 507
Cdd:TIGR02168 1022 AIEE 1025
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
163-954 |
1.20e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.61 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 163 EFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQhlQANETLQNSTLSRTATDLLQAKRQIFTQQ 242
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 243 QQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELL 320
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQvlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 321 gGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSwletsavrRVEQETQRKLSHLQAELDE 400
Cdd:pfam02463 317 -KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL--------EQLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 401 MYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVV 480
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 481 LGEKSALQSQSNDLLEEVRFLREQVQKARQ-TIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKI 559
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEErSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 560 KLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSK--LKEDLEVEHRINIEKLKDNLGIHYKQQID------GL 631
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlpLKSIAVLEIDPILNLAQLDKATLEADEDDkrakvvEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 632 QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQL 711
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 712 KTEQLEKQLKEKEDDLQEKC-AQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPStsksadsrwQKEVAMLRKET 790
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVqEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS---------ELSLKEKELAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 791 EDLQQQCLYLNEEIEKQRNtfafaEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAA 870
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLK-----AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 871 PKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRC 950
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
....
gi 568932674 951 GELE 954
Cdd:pfam02463 934 EEEP 937
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1791-2316 |
1.32e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTEL--MRESFRQKQEATESLhcleelrerlqeesrareqlAEELNKAESVIDG 1868
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEAdeVLEEHEERREELETL--------------------EAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1869 YSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpVEQRPidaaagaaRGAE 1948
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL--EECRV--------AAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1949 FLQETEKLMKEKLEVQCQAEKVR---GDLQKQVKALEIDVEEQVSRFIELEqeknAELTDLRQQSQALEKQLEKMRKFLD 2025
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELReeaAELESELEEAREAVEDRREEIEELE----EEIEELRERFGDAPVDLGNAEDFLE 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2026 EqaidREHERDVFQQEIQKLEHQLKAVpriqpvsEHQAREVEQLtnhLKE-KTDRCSELLLSKEQLQRdIQERNEEIEKL 2104
Cdd:PRK02224 416 E----LREERDELREREAELEATLRTA-------RERVEEAEAL---LEAgKCPECGQPVEGSPHVET-IEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2105 ECRVRELEQALLASAEPFPKVEDqkrsgAVEAdpelslEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEL 2184
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAED-----LVEA------EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2185 LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVST-RDQpmlfgkfAQLIQEKEIEIDRLNEQFIKLQ--- 2260
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTL-------LAAIADAEDEIERLREKREALAeln 622
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2261 --------------QQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQ 2316
Cdd:PRK02224 623 derrerlaekrerkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1950-2315 |
1.66e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1950 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQSQALEKQLEKMRKFLDE 2026
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEedlSSLEQEIENVKSELKELEARIEELEEDLHK 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2027 -QAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNhlkektdrcsELLLSKEQLQRDIQERNEEIEKLE 2105
Cdd:TIGR02169 777 lEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN----------RLTLEKEYLEKEIQELQEQRIDLK 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2106 CRVRELEQALlasaepfpkVEDQKRSGAVEADPElslEVQLQVeRDATDRK---QKEITNLEEQLEqfreELENKNDEVQ 2182
Cdd:TIGR02169 847 EQIKSIEKEI---------ENLNGKKEELEEELE---ELEAAL-RDLESRLgdlKKERDELEAQLR----ELERKIEELE 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2183 ELLMQLEIQRKESTTRLQELQQENrlfkDEIEKLGFAMKESDSvstrdQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQ 2262
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIPE-----EELSLEDVQAELQRVEEEIRALEPVNMLAIQE 980
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 2263 LklttdnkviEEQKEQIQDLETQIERLMSER--------EHEKKQREEEVEQLTGVVEKLQ 2315
Cdd:TIGR02169 981 Y---------EEVLKRLDELKEKRAKLEEERkailerieEYEKKKREVFMEAFEAINENFN 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1820-2207 |
1.95e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1820 LMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKaesvidgysdektlFERQIQEKTDIIEHLEQEvlcmnn 1899
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK--------------LKERLEELEEDLSSLEQE------ 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1900 rLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPidaaagaarGAEFLQEteklmkeklevqcqaekvrgdLQKQVK 1979
Cdd:TIGR02169 753 -IENVKSELKELEARIEELEEDLHKLEEALNDLEARL---------SHSRIPE---------------------IQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1980 ALEIDVEEQVSRFIELEQEKNAEltdlrqqsQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIqpVS 2059
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRL--------TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE--LE 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2060 EHQArEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPE 2139
Cdd:TIGR02169 872 ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 2140 LSLEvQLQVERdatDRKQKEITNLEE---QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENR 2207
Cdd:TIGR02169 951 LSLE-DVQAEL---QRVEEEIRALEPvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1968-2322 |
2.11e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1968 EKVRGDLQKqvkaleidVEEQVSRFIELEQEKnaeltdlRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2047
Cdd:TIGR02169 173 EKALEELEE--------VEENIERLDLIIDEK-------RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2048 QLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEE--------IEKLECRVRELEQALLASA 2119
Cdd:TIGR02169 238 QKEA---IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2120 EPFPKVEDQKRSGAVEADPELS----LEVQLQVERDATDRKQKEITNLEEQLEQFR---EELENKNDEVQELLMQLEIQR 2192
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAeieeLEREIEEERKRRDKLTEEYAELKEELEDLRaelEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2193 KESTTRLQELQQENRLFKDEIEKLGFAMKESDSvstrDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQlklttdNKVI 2272
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQL------AADL 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568932674 2273 EEQKEQIQDLETQIERLmsEREHEKKQRE-EEVEQLTGVVEKLQQEVVSTE 2322
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRV--EKELSKLQRElAEAEAQARASEERVRGGRAVE 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2039-2359 |
2.98e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 2.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2039 QQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLAs 2118
Cdd:TIGR02169 680 RERLEGLKRELS---SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN- 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2119 aepfpkvedqkrsgaveadpelslevqlqvERDATDRKQKEITNLEEQLEQFREELEnkndevqellmqlEIQRKESTTR 2198
Cdd:TIGR02169 756 ------------------------------VKSELKELEARIEELEEDLHKLEEALN-------------DLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2199 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLttDNKVIEEQKEQ 2278
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKEIQELQEQRIDLKEQIKSIEKEIEN--LNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2279 IQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVET 2358
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
.
gi 568932674 2359 T 2359
Cdd:TIGR02169 950 E 950
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1850-2347 |
3.57e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 3.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1850 RAREQLAEELNKAESV---IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERqllcRQREAMR 1926
Cdd:PRK03918 176 RRIERLEKFIKRTENIeelIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----KELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1927 AEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVR--GDLQKQVKALEIDVEEQVSRFIELEQEKNAELT 2004
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIklSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2005 DLRQQSQALEKQLEKMRKFLDEQAIDREHERdVFQQEIQKLEHQLKAVPRIQPVS-EHQAREVEQLTNHLKEKTDRCSEL 2083
Cdd:PRK03918 332 ELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2084 LLSKEQLQRDIQERNEEIEKLE-----CRV--RELEQ---------------ALLASAEPFPKVEDQKRSGAVEADPELS 2141
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKkakgkCPVcgRELTEehrkelleeytaelkRIEKELKEIEEKERKLRKELRELEKVLK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2142 LEVQLQVERDATDrkqkEITNLEEQLEQFR-EELENKNDEVQEL--------------------LMQLEIQRKESTTRLQ 2200
Cdd:PRK03918 491 KESELIKLKELAE----QLKELEEKLKKYNlEELEKKAEEYEKLkekliklkgeikslkkelekLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2201 ELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQL------IQEKEIEIDRLNEQFIKLQQQLKLTtdNKVIEE 2274
Cdd:PRK03918 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELkdaekeLEREEKELKKLEEELDKAFEELAET--EKRLEE 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2275 QKEQIQDLEtqieRLMSEREHEKKQRE------------EEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQL 2342
Cdd:PRK03918 645 LRKELEELE----KKYSEEEYEELREEylelsrelaglrAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
....*
gi 568932674 2343 DKVTA 2347
Cdd:PRK03918 721 ERVEE 725
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1791-2293 |
4.36e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 4.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1870
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1871 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEFL 1950
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1951 QETEKLMKEKLEVQcQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN-----------------AELTDLRQQSQAL 2013
Cdd:COG1196 473 ALLEAALAELLEEL-AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayeaALEAALAAALQNI 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2014 EKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRD 2093
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2094 IQERNEEIEKLECRVRELEQALLASAEpfpkveDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREE 2173
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSA------GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2174 LENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLgfamkESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLN 2253
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL-----EEEALEELPEPPDLEELERELERLEREIEALG 780
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 568932674 2254 -------EQFIKLQQQLK-LTTDNKVIEEQKEQIQDLETQIERLMSER 2293
Cdd:COG1196 781 pvnllaiEEYEELEERYDfLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
385-1143 |
4.36e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 4.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 385 QETQRKLSHLQAELdemYGKQIVQMKQELiNQHMSQIEELKSQHKREmentlksdtnaaisKEQVNLMNAAINELNVRLQ 464
Cdd:TIGR02168 216 KELKAELRELELAL---LVLRLEELREEL-EELQEELKEAEEELEEL--------------TAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 465 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIvaasesrk 544
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 545 elelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRtQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGihy 624
Cdd:TIGR02168 350 ------KEELESLEAELEELEAELEELESRLEE-LEEQLETLR-SKVAQLELQIASLNNEIE-RLEARLERLEDRRE--- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 625 kqqidglQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLvnsksEEMNLQINELQKEIEILKQEEKEkgtLEQ 704
Cdd:TIGR02168 418 -------RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-----ERLEEALEELREELEEAEQALDA---AER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 705 EVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKmyspseqeersiaVDPSTSKSADSRWQKEVA 784
Cdd:TIGR02168 483 ELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-------------VDEGYEAAIEAALGGRLQ 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 785 MLRKETEDLQQQCLYLNEEIEKQRNTF----AFAEKNFEVNYQELQREYTCLLKIRDDLEATQTK--------------- 845
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 846 ----QALEYESKLRA------LEEELLSKRG--NPAAPKGKSSGIFPS-------ETLEIGE-----------VVEKDTT 895
Cdd:TIGR02168 629 ddldNALELAKKLRPgyrivtLDGDLVRPGGviTGGSAKTNSSILERRreieeleEKIEELEekiaelekalaELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 896 ELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSgTENAAVCPVQMSSY 975
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-EEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 976 QAglvmgKVGDSGGSISKISKDLAEESKPMIEDKIPF-KESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQD 1054
Cdd:TIGR02168 788 EA-----QIEQLKEELKALREALDELRAELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1055 DLRLQMEAQRICLfvvysTHADQVRAHME---KEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEpLQV 1131
Cdd:TIGR02168 863 ELEELIEELESEL-----EALLNERASLEealALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-LEV 936
|
810
....*....|..
gi 568932674 1132 LIERLQQAVSEK 1143
Cdd:TIGR02168 937 RIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1879-2217 |
5.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 5.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1879 QIQEKTDIIEHLEQEVlcmnnrlQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMK 1958
Cdd:TIGR02168 671 SILERRREIEELEEKI-------EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1959 EKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEK---NAELTDLRQQSQALEKQLEKMRKFLDEQAIdrehER 2035
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeelEAQIEQLKEELKALREALDELRAELTLLNE----EA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2036 DVFQQEIQKLEHQLKAvpriqpvsehQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQAL 2115
Cdd:TIGR02168 820 ANLRERLESLERRIAA----------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2116 LASAEPFPKVEDQKRsgaveadpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEL--LMQLEIQRK 2193
Cdd:TIGR02168 890 ALLRSELEELSEELR----------ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEysLTLEEAEAL 959
|
330 340
....*....|....*....|....*.
gi 568932674 2194 ESTTRLQELQQENRLF--KDEIEKLG 2217
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKrlENKIKELG 985
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
307-806 |
6.69e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 6.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 307 VELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKR--NLKDSwletsavrrvE 384
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQikDLNDK----------L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 385 QETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENtlKSDTNAAISKEQVNLmnaaiNELNVRLQ 464
Cdd:TIGR04523 92 KKNKDKINKLNSDLSKI--NSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTEIKKKEKEL-----EKLNNKYN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 465 ETHAQKEELKGELGVVLGEKS-------------------------------ALQSQSNDLLEEVRFLREQVQKARQTIA 513
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLniqknidkiknkllklelllsnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 514 EQENRLSEARKSLSTVEDLKAEIVAASEsRKELELKH--------EAEITNYKIKLEMLEKEKNAVLDRMA----ESQEA 581
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLS-EKQKELEQnnkkikelEKQLNQLKSEISDLNNQKEQDWNKELkselKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 582 ELERLRTQLLFShEEELSKLKEDLEvehriNIEKLKDNLGIHyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENS 661
Cdd:TIGR04523 322 KLEEIQNQISQN-NKIISQLNEQIS-----QLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 662 KLrdlqeclvNSKSEEMNLQINELQKEIEILkqeEKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNIL 741
Cdd:TIGR04523 395 DL--------ESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIERLKETIIKNNSEIK----DLTNQDSVKELIIKNL 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 742 KEEKRVLEDKLKMYSPSEQEERSIAVDpsTSKSADSRwQKEVAMLRKETEDLQQQCLYLNEEIEK 806
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQ--KQKELKSK-EKELKKLNEEKKELEEKVKDLTKKISS 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1779-2335 |
8.11e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 8.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1779 PENEELMLNISSRLQAaVEKLLEAISETNTQLE---------HAKVTQTELMRESFRQKQEATES----LHCLEELRERL 1845
Cdd:PRK03918 217 PELREELEKLEKEVKE-LEELKEEIEELEKELEslegskrklEEKIRELEERIEELKKEIEELEEkvkeLKELKEKAEEY 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1846 QEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEktdiIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAM 1925
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE----LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1926 raeagpVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKV---RGDLQKQVKALEIDVEEQVS---------RFI 1993
Cdd:PRK03918 372 ------EELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKItarIGELKKEIKELKKAIEELKKakgkcpvcgREL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1994 ELEQEKN------AELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEiqKLEHQLKAVPriQPVSEHQAREVE 2067
Cdd:PRK03918 446 TEEHRKElleeytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELE--EKLKKYNLEELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2068 QLTnhlkEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQ-- 2145
Cdd:PRK03918 522 KKA----EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKel 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2146 ---------LQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTtrlqelQQENRLFKDEIEKL 2216
Cdd:PRK03918 598 epfyneyleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS------EEEYEELREEYLEL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2217 gfamkesdsvstrdQPMLFGKFAQLiQEKEIEIDRLNEQFIKLQQQLKlttdnkVIEEQKEQIQDLETQIERLMSEREHE 2296
Cdd:PRK03918 672 --------------SRELAGLRAEL-EELEKRREEIKKTLEKLKEELE------EREKAKKELEKLEKALERVEELREKV 730
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 568932674 2297 KKQREEEVEQLTGVVEKLQQEVVS--TEQQREGARTLPEDE 2335
Cdd:PRK03918 731 KKYKALLKERALSKVGEIASEIFEelTEGKYSGVRVKAEEN 771
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
129-730 |
9.15e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 9.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 129 EKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI---KQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQK 205
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENEL-NLLEKEKLNIQKNIdkiKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 206 LQIQFQHLQANETLQNSTLSRTATDLLQA-------KRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIE 278
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLkdeqnkiKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 279 NLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH-------EQLTQRNQEIQSLKlelgnsQQNERKc 351
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSEsensekqRELEEKQNEIEKLK------KENQSY- 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 352 SEEIKELmrtveELQKRNLKdswLETSAVRRVEQETQRKLSHLQAELDEMyGKQIVQMKQELINQHmSQIEELKSQhKRE 431
Cdd:TIGR04523 383 KQEIKNL-----ESQINDLE---SKIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNN-SEIKDLTNQ-DSV 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 432 MENTLKS-DTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQ 510
Cdd:TIGR04523 452 KELIIKNlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 511 TIAEQENRLSEARKSLSTVED------LKAEIvaaSESRKELE-LKHE-----AEITNYKIKLEMLEKEKNAVLDRMAEs 578
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFelkkenLEKEI---DEKNKEIEeLKQTqkslkKKQEEKQELIDQKEKEKKDLIKEIEE- 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 579 qeaelerlRTQLLFSHEEELSKLKEDLE--VEHRINIEKLKDNLgihyKQQIDGLQNEMNRKMESmqceTDNLITQQNQL 656
Cdd:TIGR04523 608 --------KEKKISSLEKELEKAKKENEklSSIIKNIKSKKNKL----KQEVKQIKETIKEIRNK----WPEIIKKIKES 671
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932674 657 ILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKgtleqEVQELQLKTEQLEKQLKEKEDDLQEK 730
Cdd:TIGR04523 672 KTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYK-----EIEKELKKLDEFSKELENIIKNFNKK 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1528-2316 |
9.63e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 9.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1528 EQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQKSSIDT--EHVVSERERVLLEELEA 1605
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQqkQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1606 LKQLPLAGRKElccelrhsstqtqdghDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKilLEVVKTT 1685
Cdd:TIGR02168 322 EAQLEELESKL----------------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1686 SAAEetIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDESIPSYPGTAIATHDSIWSKVTEEGAELSQ 1765
Cdd:TIGR02168 384 LRSK--VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1766 RLvrsgfagpvidpeneelmlnisSRLQAAVEKLLEAISETNTQLEH--AKVTQTELMRESFRQKQEATESLhcLEELRE 1843
Cdd:TIGR02168 462 AL----------------------EELREELEEAEQALDAAERELAQlqARLDSLERLQENLEGFSEGVKAL--LKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1844 RLQEESRAREQL--AEELNKAESVIDGYSDEKTLFERQiQEKTDIIEHLEQEVLCMNNRLQE-LESDQRRVEEERQLLCR 1920
Cdd:TIGR02168 518 LSGILGVLSELIsvDEGYEAAIEAALGGRLQAVVVENL-NAAKKAIAFLKQNELGRVTFLPLdSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1921 QREAMRAEAGPVEQRP----------------------IDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQV 1978
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPklrkalsyllggvlvvddldnaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1979 KALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPV 2058
Cdd:TIGR02168 677 REIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2059 SEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADp 2138
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA- 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2139 elSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL---MQLEIQRKESTTRLQELQQENRLFKDEIEK 2215
Cdd:TIGR02168 835 --ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSE 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2216 LGFAMKESDSvstrdqpmLFGKFAQLIQEKEIEIDRLNEQFIKLQQ-------QLKLTTDNKvIEEQKEQIQDLETQIER 2288
Cdd:TIGR02168 913 LRRELEELRE--------KLAQLELRLEGLEVRIDNLQERLSEEYSltleeaeALENKIEDD-EEEARRRLKRLENKIKE 983
|
810 820 830
....*....|....*....|....*....|....*...
gi 568932674 2289 L-------MSEREHEKKQREE---EVEQLTGVVEKLQQ 2316
Cdd:TIGR02168 984 LgpvnlaaIEEYEELKERYDFltaQKEDLTEAKETLEE 1021
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1997-2216 |
1.14e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1997 QEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAvpriqpvsehQAREVEQLTNHLKEK 2076
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA----------LARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2077 TDRCSELLLSKEQLQRDIQERNEEIEKlecRVRELEQ-------ALLASAEPFPKV------------EDQKRSGAVEAD 2137
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAE---LLRALYRlgrqpplALLLSPEDFLDAvrrlqylkylapARREQAEELRAD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932674 2138 PElslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2216
Cdd:COG4942 159 LA-----ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2998-3335 |
1.24e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2998 REQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQlSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA 3077
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3078 FRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLN 3157
Cdd:PTZ00121 1516 KKAEEAKKADEAK-----KAEEAKKADEAKKAEEKKKAD-------ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3158 ESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpSEDLLK--ELQ 3235
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE----------AEEKKKaeELK 1653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3236 KQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANT--QGQKKMQELQSKVEELQRQLQEKRQQVY 3313
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
330 340
....*....|....*....|..
gi 568932674 3314 KLDLEGKRLQGLMQEFQKQELE 3335
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
110-606 |
1.25e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 110 DDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRAsfgtEGLKQLQEFEAAIKQRDGIITQLtANLQQARREK 189
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEAL-LEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 190 DDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAF 269
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 270 EMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELgnsqqneR 349
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL-------I 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 350 KCSEEIKELMRTVEE--LQKRNLKDswlETSAVRRVEQETQRKLSHLQAE-LDEMYGKQIVQMKQELINQHMSQIEELKS 426
Cdd:COG1196 531 GVEAAYEAALEAALAaaLQNIVVED---DEVAAAAIEYLKAAKAGRATFLpLDKIRARAALAAALARGAIGAAVDLVASD 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 427 QHKREMENTLKSDTNAAISKEQVNLMNAainelNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQ 506
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAA-----LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 507 KARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERL 586
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL 762
|
490 500
....*....|....*....|
gi 568932674 587 RTQllfshEEELSKLKEDLE 606
Cdd:COG1196 763 EEL-----ERELERLEREIE 777
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
264-861 |
1.26e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 264 EKLRAFEMEKDRKIENlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL---LGGLHEQLTQRNQEIQSLKLE 340
Cdd:PRK03918 182 EKFIKRTENIEELIKE-KEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 341 LGNSQQNERKCSEEIKELMRTVEELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELdEMYGKQI--VQMKQELINQHM 418
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKE--LKEKAEEYIKLSEFYEEYLDELREIEKRL-SRLEEEIngIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 419 SQIEELKSQhKREMENTLksdtnaAISKEQVNLMNaainelnvRLQETHAQKEELKGELGVVLGEKSalqsqsNDLLEEV 498
Cdd:PRK03918 338 ERLEELKKK-LKELEKRL------EELEERHELYE--------EAKAKKEELERLKKRLTGLTPEKL------EKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 499 RFLREQVQKARQTIAEQENRLSEARKSLST-VEDLKAEIVAASESRKELELKHEAEITN-YKIKLEMLEKEKnAVLDRMA 576
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKEIKELKKaIEELKKAKGKCPVCGRELTEEHRKELLEeYTAELKRIEKEL-KEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 577 ESQEAELERLRTQLlfSHEEELSKLKEDLEvehriNIEKLKDNLGIHYKQqidglqnEMNRKMEsmqcetdnlitqqnql 656
Cdd:PRK03918 476 RKLRKELRELEKVL--KKESELIKLKELAE-----QLKELEEKLKKYNLE-------ELEKKAE---------------- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 657 ilensklrdlqeclvnsKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDA 736
Cdd:PRK03918 526 -----------------EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 737 EnniLKEEKRVLEDKLKMY-----SPSEQEERSIAVDPSTSKSADSR-----WQKEVAMLRKETEDLQQqcLYLNEEIEK 806
Cdd:PRK03918 589 E---LEERLKELEPFYNEYlelkdAEKELEREEKELKKLEEELDKAFeelaeTEKRLEELRKELEELEK--KYSEEEYEE 663
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 807 QRNtfafaeknfevNYQELQREYTCLLKIRDDLEatqtKQALEYESKLRALEEEL 861
Cdd:PRK03918 664 LRE-----------EYLELSRELAGLRAELEELE----KRREEIKKTLEKLKEEL 703
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1948-2512 |
1.35e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1948 EFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEqEKNAELTDLRQQSQALEKQLEKMRKFLDEQ 2027
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2028 aidreherdvfQQEIQKLEHQLKAVPRIQPVSEhQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECR 2107
Cdd:PRK03918 272 -----------KKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2108 VRELEQALlasaepfpkVEDQKRSGAVEADPELSLEVQLQVERdaTDRKQKEITNLE-EQLEQFREELENKNDEVQEllm 2186
Cdd:PRK03918 340 LEELKKKL---------KELEKRLEELEERHELYEEAKAKKEE--LERLKKRLTGLTpEKLEKELEELEKAKEEIEE--- 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2187 qleiQRKESTTRLQELQQENRLFKDEIEKLGFAMKE----SDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQ 2262
Cdd:PRK03918 406 ----EISKITARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2263 LK-----LTTDNKVIEEQK--EQIQDLETQIERLMSErehEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDE 2335
Cdd:PRK03918 482 LRelekvLKKESELIKLKElaEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2336 ESFKHQLDKVTAEKLVLEQQVE-------------------------TTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2390
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEelgfesveeleerlkelepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2391 CASNEELPSlpkesvhmTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCR 2470
Cdd:PRK03918 639 EKRLEELRK--------ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 568932674 2471 EQTETIqEQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQME 2512
Cdd:PRK03918 711 KELEKL-EKALERVEELREKVKKYKALLKERALSKVGEIASE 751
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2962-3281 |
1.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2962 EYHTAMDCLQKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDcsMQQKQSLEMQLELSSLRDRAAELQEQLS 3041
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA--ELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3042 SEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARsghhE 3121
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA----L 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3122 GREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKST 3201
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3202 LDKERELYAQLQSREdggqpppaLPSEDLLKELQKQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ 3281
Cdd:COG1196 448 AEEEAELEEEEEALL--------ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2930-3255 |
1.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2930 LATFQTELTSLSTRDVDGLLNSLEQRIQEQgieyhtamdclqKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQEL 3009
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEEL------------EAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3010 LDCSMQQKQSLEMQLE-LSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDE 3088
Cdd:COG1196 290 EYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3089 IHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKM 3168
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3169 LHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGGQPPPALPSEDLLKELQKQLEEKHSRIVEL 3248
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
....*..
gi 568932674 3249 LSETEKY 3255
Cdd:COG1196 530 IGVEAAY 536
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1853-2344 |
3.41e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESdqrrVEEERQLLCRQREAMRAEAGPV 1932
Cdd:TIGR04523 155 EKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK----KIQKNKSLESQISELKKQNNQL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1933 EQRPIDAAAGAARGAEFLQETEKLMKEKLEVQcqaekvrGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQ 2009
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ-------NKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2010 SQA-LEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCselllskE 2088
Cdd:TIGR04523 304 KEQdWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS---QLKKELTNSESENSEKQRELEEKQNEI-------E 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2089 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQ-- 2166
Cdd:TIGR04523 374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE---LLEKEIERLKETIIKNNSEIKDLTNQds 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2167 -LEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESD---SVSTRDQPMLFGKFAQL- 2241
Cdd:TIGR04523 451 vKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEekvKDLTKKISSLKEKIEKLe 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2242 --IQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLE----------TQIERLMSEREHEKKQREEEVEQLTG 2309
Cdd:TIGR04523 531 seKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKqtqkslkkkqEEKQELIDQKEKEKKDLIKEIEEKEK 610
|
490 500 510
....*....|....*....|....*....|....*
gi 568932674 2310 VVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDK 2344
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1790-2104 |
3.53e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1790 SRLQAAVEKLLEAISETNTQLEHakvTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEElnkaesvIDGY 1869
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQLEE---RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-------IEQL 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1870 SDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRpidAAAGAARGAEF 1949
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---IEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1950 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAI 2029
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2030 D-----------REHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrcsELLLSKEQLQRDIQERN 2098
Cdd:TIGR02168 951 LtleeaealenkIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE---DLTEAKETLEEAIEEID 1027
|
....*.
gi 568932674 2099 EEIEKL 2104
Cdd:TIGR02168 1028 REARER 1033
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1967-2495 |
7.81e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 7.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1967 AEKVRGDLQKQVKALEIDV----------EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfLDEQAIDREHERD 2036
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELaeldeeieryEEQREQARETRDEADEVLEEHEERREELETLEAEIED-LRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2037 VFQQEIQKLEHQL----KAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2112
Cdd:PRK02224 276 ELAEEVRDLRERLeeleEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2113 QAllasaepfpkvEDQKRSGAVEadpelsLEVQLQVERDATDRKQKEITNLEEQLEQFREELEN---KNDEVQELLMQLE 2189
Cdd:PRK02224 356 ER-----------AEELREEAAE------LESELEEAREAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2190 IQRKESTTRLQELQQENRLFKDEIEKlGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQfiklqqqlklttdn 2269
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAE-------------- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2270 kvIEEQKEQIQDLETQIERLMSEREHEKkQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEK 2349
Cdd:PRK02224 484 --LEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2350 LVLEQQVETTNQVmthmnnvLKEINFKMDQITQSLCNLNKECASNEELPSLPKEsvhmtvhelgsdnlqpedapAQDVTK 2429
Cdd:PRK02224 561 AEAEEEAEEAREE-------VAELNSKLAELKERIESLERIRTLLAAIADAEDE--------------------IERLRE 613
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 2430 PLEKQTSLTRLQKSPEASRTQEIESLASSV-GAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQ 2495
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1853-2357 |
9.02e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 9.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEvlcmnnrLQELESDQRRVEE------ERQLLCRQREAMR 1926
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE-------IEELEEKVKELKElkekaeEYIKLSEFYEEYL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1927 AEAGPVEQRPIDAAAGAARGAEFLQETE-------KLMKEKLEVQCQAEKVRGDLQK--QVKALEIDVEEQVSRFIELEQ 1997
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIKELEekeerleELKKKLKELEKRLEELEERHELyeEAKAKKEELERLKKRLTGLTP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1998 EK-NAELTDLRQQSQALEKQLEKMRkfldeqaiDREHERDVFQQEIQKLEHQLKAVPRIQPVSehqAREVEQltnhlKEK 2076
Cdd:PRK03918 387 EKlEKELEELEKAKEEIEEEISKIT--------ARIGELKKEIKELKKAIEELKKAKGKCPVC---GRELTE-----EHR 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2077 TDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFP--KVEDQKRsgavEADPELSLEVQLQVERDAtd 2154
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkELAEQLK----ELEEKLKKYNLEELEKKA-- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2155 rkqKEITNLEEQLEQFREELENKNDEVQElLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPML 2234
Cdd:PRK03918 525 ---EEYEKLKEKLIKLKGEIKSLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2235 FGKFAQL------IQEKEIEIDRLNEQFIKLQQQLKLTtdNKVIEEQKEQIQDLetqiERLMSEREHEKKqrEEEVEQLT 2308
Cdd:PRK03918 601 YNEYLELkdaekeLEREEKELKKLEEELDKAFEELAET--EKRLEELRKELEEL----EKKYSEEEYEEL--REEYLELS 672
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 568932674 2309 GVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2357
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
270-818 |
1.70e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.42 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 270 EMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNER 349
Cdd:pfam05483 107 KLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYM 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 350 KCSEEIKELMRTVEELqkrnlkdswletsavrRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQhK 429
Cdd:pfam05483 187 DLNNNIEKMILAFEEL----------------RVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ-I 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 430 REMENTLKSDTNA-AISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVlgeKSALQSQsndlLEEVRFLREQVQKA 508
Cdd:pfam05483 250 TEKENKMKDLTFLlEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI---KMSLQRS----MSTQKALEEDLQIA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 509 RQTI----AEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKE---KNAVLDRMAE---S 578
Cdd:pfam05483 323 TKTIcqltEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMElqkKSSELEEMTKfknN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 579 QEAELERLRT-----QLLFSHEEELSKLKEDLEVEHRINI------EKLKDNLGI----------HYKQQIDGLQNEMNR 637
Cdd:pfam05483 403 KEVELEELKKilaedEKLLDEKKQFEKIAEELKGKEQELIfllqarEKEIHDLEIqltaiktseeHYLKEVEDLKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 638 ---KMESMQCETDNLITQQNQLILENS----KLRDLQECLVNSKSEE--MNLQINELQ-KEIEILKQEEKEKGTLEQEVQ 707
Cdd:pfam05483 483 eklKNIELTAHCDKLLLENKELTQEASdmtlELKKHQEDIINCKKQEerMLKQIENLEeKEMNLRDELESVREEFIQKGD 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 708 ELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLR 787
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
|
570 580 590
....*....|....*....|....*....|.
gi 568932674 788 KETEDLQQQCLYLNEEIEKQRNTFAFAEKNF 818
Cdd:pfam05483 643 LELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1853-2390 |
1.75e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNR-------LQELESDQRRVEEERQLLCRQREAM 1925
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKlkknkdkINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1926 RAEAGPVEQrpiDAAAGAARGAEFLQETEKLMKEKLEVQCQAEkvrgDLQKQVKALEIDVEEqvsrFIELEQEKNAELTD 2005
Cdd:TIGR04523 123 EVELNKLEK---QKKENKKNIDKFLTEIKKKEKELEKLNNKYN----DLKKQKEELENELNL----LEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2006 LRQQSQALEKQLEKMRKFLDEQaidreherDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLL 2085
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKN--------KSLESQISELKKQNN---QLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2086 SKEQLQRDIQERNEEIEKLECRVRELE---QALLASAEPFPKVEDQKRSGAVEADPElSLEVQLQVERDATDRKQKEITN 2162
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQKEQDWNKELKSELK-NQEKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2163 LEEQLEQFREELENKNDEVQELLMQLEiqrkESTTRLQELQQENRLFKDEIEKLgfamkesdSVSTRDQPMLFGKFAQLI 2242
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELE----EKQNEIEKLKKENQSYKQEIKNL--------ESQINDLESKIQNQEKLN 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2243 QEKEIEIDRLNEQFIKLQQQLKL-----TTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREE---EVEQLTGVVEKL 2314
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELLEKEIERlketiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrSINKIKQNLEQK 487
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568932674 2315 QQEVVSTEQqregartlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2390
Cdd:TIGR04523 488 QKELKSKEK-----------------ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1844-2216 |
1.81e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1844 RlqeesraREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQRE 1923
Cdd:TIGR02168 685 K-------IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1924 AMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMkEKLEVQCQAEKVRGD-LQKQVKALEIDVEEQVSRFIELEQEKNA- 2001
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQI-EQLKEELKALREALDeLRAELTLLNEEAANLRERLESLERRIAAt 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2002 --ELTDLRQQSQALEKQLEKMRKFLDEQAIDREH---ERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQltnHLKEK 2076
Cdd:TIGR02168 837 erRLEDLEEQIEELSEDIESLAAEIEELEELIEElesELEALLNERASLEEALALLRSELEELSEELRELES---KRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2077 TDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKvedqkrsgAVEADPElslEVQLQVERDATDRK 2156
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN--------KIEDDEE---EARRRLKRLENKIK 982
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2157 QKEITNLE-----EQLEQFREELENKNDEVQELLMQLE--IQR--KESTTRLQE-LQQENRLFKDEIEKL 2216
Cdd:TIGR02168 983 ELGPVNLAaieeyEELKERYDFLTAQKEDLTEAKETLEeaIEEidREARERFKDtFDQVNENFQRVFPKL 1052
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2088-2375 |
1.87e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2088 EQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAdpELSlevQLQVERDATDRKQKEITNLEEQL 2167
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER--EIA---ELEAELERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2168 EQFREELENKNDEVQELlmQLEIQRKEST-TRLQELQQENRLFKDEIEKLGfamkesdsvSTRDQPMLFGKFAQLIQEKe 2246
Cdd:COG4913 695 EELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLA---------RLELRALLEERFAAALGDA- 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2247 ieidRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2326
Cdd:COG4913 763 ----VERELRENLEER---------IDALRARLNRAEEELERAM--RAFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568932674 2327 GartLPEDEESFKHQLDKVTAEKLV-----LEQQVETTNQVMTHMNNVLKEINF 2375
Cdd:COG4913 828 G---LPEYEERFKELLNENSIEFVAdllskLRRAIREIKERIDPLNDSLKRIPF 878
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
250-597 |
2.77e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 250 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIdELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQ 329
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY-ELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 330 RNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRRVEQETQRKLSHLQAELdemygkqivQ 408
Cdd:TIGR02169 263 LEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELE--------AEIASLERSIAEKERELEDAEERL---------A 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 409 MKQELINQHMSQIEELKSQhkREMENTLKSDTNAAISKEQvnlmnAAINELNVRLQETHAQKEELKGELGVVLGEKSALQ 488
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK-----EELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 489 SQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSL----STVEDLKAEIVAASESRKELelkhEAEITNYKIKLEML 564
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleEEKEDKALEIKKQEWKLEQL----AADLSKYEQELYDL 474
|
330 340 350
....*....|....*....|....*....|...
gi 568932674 565 EKEKNAVLDRMAESQEaELERLRTQLLFSHEEE 597
Cdd:TIGR02169 475 KEEYDRVEKELSKLQR-ELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2952-3253 |
2.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2952 LEQRIQEQGIEYHTAMDCLQ--KADRRSLLAEIEDLRAQINGGKMTLER-----EQGTEKSSQELLDCSMQQKQSLEMQL 3024
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEelEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3025 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgTTLKAQHKRLKE--------LEAFRSEVKEKTDEIHFLSDTL 3096
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEeaanlrerLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3097 AREQKNSLELQWALEKEKArsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSE 3176
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEE--------LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932674 3177 EQGRNLGLQALLESEQVRIQEMKSTLdkeRELYaQLQSREDGGQPPPALPSEDLLKELQKQLEEKHSRI--VELLSETE 3253
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERL---SEEY-SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLAAIEE 994
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1867-2516 |
3.16e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1867 DGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNrlqelESDQRRVEEERQL--LCRQREAMRAEagpvEQRPIDAAAGAA 1944
Cdd:PTZ00121 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKK-----AEDARKAEEARKAedARKAEEARKAE----DAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1945 RGAEFLQETEKLMKEKLEVQCQAEKVRgdlqkqvKALEIDVEEQVSRFIE---LEQEKNAELTDLRQQSQALE--KQLEK 2019
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVR-------KAEELRKAEDARKAEAarkAEEERKAEEARKAEDAKKAEavKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2020 MRKfLDEQAIDREHER---DVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQE 2096
Cdd:PTZ00121 1235 AKK-DAEEAKKAEEERnneEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2097 --RNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPEL-SLEVQLQVERDATDRKQKEITNLEEQLEQFR-- 2171
Cdd:PTZ00121 1314 akKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKka 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2172 EELENKNDEVQELLMQLEiQRKESTTRLQELQQ--ENRLFKDEIEKLGFAMKESDSVSTRDQPmlfGKFAQLIQEKEIEI 2249
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELK-KAAAAKKKADEAKKkaEEKKKADEAKKKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEA 1469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2250 DRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGAR 2329
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2330 TLPEDEESFKHQLDKVTAEKlvleQQVETTNQVMTHMNNVLKEInfkmdqitqslcnlnkECASNEELPSLPKESVHMTV 2409
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEA----KKAEEDKNMALRKAEEAKKA----------------EEARIEEVMKLYEEEKKMKA 1609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2410 HELGSDnlQPEDAPAQDVTKPLEKQTSLTRLQKSP--EASRTQEIESLASSVGAKDVELTQCREQTETIQEQAQSETDRL 2487
Cdd:PTZ00121 1610 EEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEaeEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
650 660
....*....|....*....|....*....
gi 568932674 2488 QKKLTDLQRSLEKfaAALVSQVQMEAAQE 2516
Cdd:PTZ00121 1688 KKAAEALKKEAEE--AKKAEELKKKEAEE 1714
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2042-2312 |
3.29e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 56.40 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2042 IQKLEHQLKAV--PRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELeqallasa 2119
Cdd:COG2433 382 LEELIEKELPEeePEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA-------- 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2120 epfpkveDQKRSGAVEADPELSlevqlqverdatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRL 2199
Cdd:COG2433 454 -------RSEERREIRKDREIS-------------RLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPV 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2200 QELQQenrLFKDEIEKL--GFAMKESDSVSTRDqPMLFGK-FAQLIQEKEIE-IDRLNEQFIKLQQQLKlttDNK--VIE 2273
Cdd:COG2433 514 KVVEK---FTKEAIRRLeeEYGLKEGDVVYLRD-ASGAGRsTAELLAEAGPRaVIVPGELSEAADEVLF---EEGipVLP 586
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568932674 2274 EQKEQIQ-----------DLETQIERLmsEREHEKKQREEEVEQLTGVVE 2312
Cdd:COG2433 587 AEDVTIQevddlavvdeeELEAAIEDW--EERAEERRREKKAEMLERLIS 634
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
128-621 |
4.13e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 4.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 128 VEKELAEKQHDIEELTQELEEMRASFGT------------EGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVE 195
Cdd:PRK03918 198 KEKELEEVLREINEISSELPELREELEKlekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 196 FLELTEQSQKLQiqfqhlqaNETLQNSTLSRTATDLLQAKRQIftqqqqlqdyQKKEEDLQAQISFLQEKLrafemekdr 275
Cdd:PRK03918 278 LEEKVKELKELK--------EKAEEYIKLSEFYEEYLDELREI----------EKRLSRLEEEINGIEERI--------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 276 kienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH--EQLTQR--NQEIQSLKLELGNSQQNERKC 351
Cdd:PRK03918 331 -------KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEelERLKKRltGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 352 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRKLS-HLQAELDEMYGKQIVQMKQELInQHMSQIEELKSQh 428
Cdd:PRK03918 404 EEEISKITARIGELKKEikELKKAIEELKKAKGKCPVCGRELTeEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKE- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 429 KREMENTLKSDTNAAISKEQVNLMNAAINELNV----RLQETHAQKEELKGELGVVLGEKSALQS---QSNDLLEEVRFL 501
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKeleKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 502 REQVQKARQTIAEQENRLSEarKSLSTVEDLKAEI----------VAASESRKELELKHE-------------AEITNYK 558
Cdd:PRK03918 562 EKKLDELEEELAELLKELEE--LGFESVEELEERLkelepfyneyLELKDAEKELEREEKelkkleeeldkafEELAETE 639
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568932674 559 IKLEMLEKEKNAVLDRMAESQEAELERLRTQL---LFSHEEELSKLKEDLEvEHRINIEKLKDNLG 621
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1967-2359 |
4.77e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1967 AEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLE 2046
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2047 HQLKAVPRI-QPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRV-----------RELEQA 2114
Cdd:COG4913 373 LPLPASAEEfAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniparllalrDALAEA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2115 LLASAEPFP--------KVEDQKRSGAVEA-----------DPE-----------LSLEVQLQVERDATDRKQKEITNLE 2164
Cdd:COG4913 453 LGLDEAELPfvgelievRPEEERWRGAIERvlggfaltllvPPEhyaaalrwvnrLHLRGRLVYERVRTGLPDPERPRLD 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2165 EQ-----LE----QFREELEN---------KNDEVQELL-----MQLEIQRKESTTR----------------------L 2199
Cdd:COG4913 533 PDslagkLDfkphPFRAWLEAelgrrfdyvCVDSPEELRrhpraITRAGQVKGNGTRhekddrrrirsryvlgfdnrakL 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2200 QELQQENRLFKDEIEKLGFAMKESDSV--STRDQPMLFGKFAQLiQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQK 2276
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAEldALQERREALQRLAEY-SWDEIDVASAEREIAELEAELeRLDASSDDLAALE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2277 EQIQDLETQIERLMSERE---HEKKQREEEVEQLTGVVEKLQQEVVSTEQ--------------QREGARTLPED-EESF 2338
Cdd:COG4913 692 EQLEELEAELEELEEELDelkGEIGRLEKELEQAEEELDELQDRLEAAEDlarlelralleerfAAALGDAVERElRENL 771
|
490 500
....*....|....*....|.
gi 568932674 2339 KHQLDKVTAEKLVLEQQVETT 2359
Cdd:COG4913 772 EERIDALRARLNRAEEELERA 792
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
132-946 |
4.87e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 4.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 132 LAEKQHDIEELTQELEEMRASFG---TEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 208
Cdd:pfam01576 45 LQEQLQAETELCAEAEEMRARLAarkQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 209 QFQHLQA------NETL----QNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDL----QAQISFLQEKLRA-----F 269
Cdd:pfam01576 125 EKVTTEAkikkleEDILlledQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLknkhEAMISDLEERLKKeekgrQ 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 270 EMEKDRKIENLNAKEIQEK----QALIDELNTRVVEEEKktvELKNKVTTADElLGGLHEQLTQRNQEIQSLKLELGNSQ 345
Cdd:pfam01576 205 ELEKAKRKLEGESTDLQEQiaelQAQIAELRAQLAKKEE---ELQAALARLEE-ETAQKNNALKKIRELEAQISELQEDL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 346 QNERKCSEEIKELMRTV-EELQ--KRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMkQELINQHMSQIE 422
Cdd:pfam01576 281 ESERAARNKAEKQRRDLgEELEalKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQL-QEMRQKHTQALE 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 423 ELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLR 502
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 503 EQVQKARQTIAEQENRLSEARKSLSTVED--LKAEIVAASESRKELELKHeaeitnykiKLEMLEKEKNAVLDRMAESQE 580
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESqlQDTQELLQEETRQKLNLST---------RLRQLEDERNSLQEQLEEEEE 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 581 A------ELERLRTQL-------------LFSHEEELSKLKEDLE---------VEHRINIEKLKDNLgihyKQQIDGL- 631
Cdd:pfam01576 511 AkrnverQLSTLQAQLsdmkkkleedagtLEALEEGKKRLQRELEaltqqleekAAAYDKLEKTKNRL----QQELDDLl 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 632 -----QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS----------EEMNLQINELQKEIEILKQE- 695
Cdd:pfam01576 587 vdldhQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKEtralslaralEEALEAKEELERTNKQLRAEm 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 696 -----------------EKEKGTLEQEVQELQLKTEQLEKQLKEKED-------DLQEKCAQ----LDAENNILKEEKRV 747
Cdd:pfam01576 667 edlvsskddvgknvhelERSKRALEQQVEEMKTQLEELEDELQATEDaklrlevNMQALKAQferdLQARDEQGEEKRRQ 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 748 LEDKLKMYSPSEQEERSIAVDPSTSKsadsrwqKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeKNFEVNYQELQR 827
Cdd:pfam01576 747 LVKQVRELEAELEDERKQRAQAVAAK-------KKLELDLKELEAQIDAANKGREEAVKQL-------KKLQAQMKDLQR 812
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 828 EYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAApkgkssgifpSETLEIGEVVEKDttELMEKL------ 901
Cdd:pfam01576 813 ELEEARASRDEILA----QSKESEKKLKNLEAELLQLQEDLAA----------SERARRQAQQERD--ELADEIasgasg 876
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 568932674 902 -EVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 946
Cdd:pfam01576 877 kSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQL 922
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1850-2289 |
5.24e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1850 RAREQLAEELNKAESVIDGYSDEktlfERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQL--LCRQREAMRA 1927
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1928 EAGPVEQRPidaaagaARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLR 2007
Cdd:COG4717 140 ELAELPERL-------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2008 QQSQALEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSK 2087
Cdd:COG4717 213 EELEEAQEELEELEE--ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLF 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2088 EQLQRDIQERNEEIEKLEC--RVRELEQALLAS-AEPFPKVEDQKRSGAVEADPELSlEVQLQVERDATDRKQKEITNLE 2164
Cdd:COG4717 291 LLLAREKASLGKEAEELQAlpALEELEEEELEElLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2165 EQLEQFREELENKNDEvqELLMQLEIQRkesttRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQpmLFGKFAQL--- 2241
Cdd:COG4717 370 QEIAALLAEAGVEDEE--ELRAALEQAE-----EYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELeee 440
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568932674 2242 IQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERL 2289
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELREL 488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
128-905 |
6.78e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 6.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 128 VEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 207
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 208 IqfqhlqanetlqnstlSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAqisfLQEKLRAfemEKDRKIENLNAKEiQE 287
Cdd:PTZ00121 1168 E----------------ARKAEDAKKAEAARKAEEVRKAEELRKAEDARK----AEAARKA---EEERKAEEARKAE-DA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 288 KQAlidELNTRVVEEEKKTVELK--NKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK-------EL 358
Cdd:PTZ00121 1224 KKA---EAVKKAEEAKKDAEEAKkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadeakkaEE 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 359 MRTVEELQKRnlKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGK-QIVQMKQELINQHMSQIEELKSQHKREMENTLK 437
Cdd:PTZ00121 1301 KKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 438 SDTNAAISKEQVNlmnaAINELNVRLQETHAQKEELKgelgvvlgEKSALQSQSndllEEVRFLREQVQKARQTI--AEQ 515
Cdd:PTZ00121 1379 KADAAKKKAEEKK----KADEAKKKAEEDKKKADELK--------KAAAAKKKA----DEAKKKAEEKKKADEAKkkAEE 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 516 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEitnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshE 595
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----A 1506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 596 EELSKLKEDLEVEHRINIEKLKdnlgihykqqidglQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS 675
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 676 EEMNlqiNELQKEIEILKQEEKEK--GTLEQEVQELQLKTEQLEKQlkEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:PTZ00121 1573 EEDK---NMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 754 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFE--VNYQELQREytc 831
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEekKKAEELKKA--- 1724
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932674 832 llKIRDDLEATQTKQALEYESK----LRALEEELLSKRGNPAAPKGKSSGIFPSETLEIGE-VVEKDTTELMEKLEVTK 905
Cdd:PTZ00121 1725 --EEENKIKAEEAKKEAEEDKKkaeeAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3020-3312 |
7.76e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 7.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3020 LEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLARE 3099
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3100 QKNSLELQWALEKEKARsghhegreKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQG 3179
Cdd:TIGR02168 753 SKELTELEAEIEELEER--------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3180 RNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKykldS 3259
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---------------IEELEELIEELESELEALLNERAS----L 885
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568932674 3260 LQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQV 3312
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1950-2177 |
1.87e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1950 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKFLDE 2026
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2027 Q--AIDREHERD-----VFQQEIQKLEHQLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNE 2099
Cdd:COG4942 109 LlrALYRLGRQPplallLSPEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 2100 EIEKLEcRVRELEQALLAsaepfpkvedqkrsgaveadpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENK 2177
Cdd:COG4942 186 ERAALE-ALKAERQKLLA-----------------------RLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3016-3309 |
1.91e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3016 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKlelgttlkaqhkrlKELEAFRSEVKEKTDEIHFLSDT 3095
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ--------------KELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3096 LAREQKNSLELQWALEKEKARSGHHEGRE---KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHdA 3172
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELaelEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV-A 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3173 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEEKHSRIVELLSET 3252
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-------------LKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 3253 EkykldslQTRQQMEKDRQvhqkTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKR 3309
Cdd:TIGR02168 457 E-------RLEEALEELRE----ELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
516-862 |
1.93e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 516 ENRLSEARKSLSTVEDLKAEIvaasesRKELE-LKHEAEITN--YKIKLEMLEKEKNAVLDRMaESQEAELERLRTQLlf 592
Cdd:COG1196 178 ERKLEATEENLERLEDILGEL------ERQLEpLERQAEKAEryRELKEELKELEAELLLLKL-RELEAELEELEAEL-- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 593 sheEELSKLKEDLEVEHRiNIEKLKDNLgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvn 672
Cdd:COG1196 249 ---EELEAELEELEAELA-ELEAELEEL----RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE---- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 673 skseemnlQINELQKEIEILKQEekekgtLEQEVQELQLKTEQLEKQ---LKEKEDDLQEKCAQLDAENNILKEEKRVLE 749
Cdd:COG1196 317 --------RLEELEEELAELEEE------LEELEEELEELEEELEEAeeeLEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 750 DKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREY 829
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340 350
....*....|....*....|....*....|...
gi 568932674 830 TCLLKIRDDLEATQTKQALEYESKLRALEEELL 862
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
282-737 |
1.95e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 282 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLT---QRNQEIQSLKLELGNSQQNERKC------- 351
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLRETIAETerereel 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 352 SEEIKELMRTVEELQKRNlkDSWLETSAVRRVEQET-QRKLSHLQAELDEMygkqivqmkQELINQHMSQIEELKSQHKR 430
Cdd:PRK02224 278 AEEVRDLRERLEELEEER--DDLLAEAGLDDADAEAvEARREELEDRDEEL---------RDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 431 EMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGEL----------GVVLGEksaLQSQSNDLLEEVRF 500
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIeelrerfgdaPVDLGN---AEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 501 LREQVQKARQTIAEQENRLSEARKSLST---------VEDlkAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAV 571
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEG--SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 572 LDrmAESQEAELERLR------TQLLFSHE----------EELSKLKEDLEVE-----------------HRINIEKLKD 618
Cdd:PRK02224 502 ED--LVEAEDRIERLEerredlEELIAERRetieekreraEELRERAAELEAEaeekreaaaeaeeeaeeAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 619 NLGiHYKQQIDGLQN---------EMNRKMESMQCETDNLITQQNQ----LILENSKLRDLQECL--------------- 670
Cdd:PRK02224 580 KLA-ELKERIESLERirtllaaiaDAEDEIERLREKREALAELNDErrerLAEKRERKRELEAEFdearieearedkera 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932674 671 ------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAE 737
Cdd:PRK02224 659 eeyleqVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALE-ALYDEAEELESMYGDLRAE 730
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1887-2304 |
2.05e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1887 IEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAmraeagpveqrpidaaagaargaefLQETEKLMKEKLEVQcQ 1966
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREA-------------------------LQRLAEYSWDEIDVA-S 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1967 AEKVRGDLQKQVKALEidveeqvsrfieleqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDR---EHERDVFQQEIQ 2043
Cdd:COG4913 666 AEREIAELEAELERLD---------------ASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2044 KLEHQLKAVPRIQPVSEHqarevEQLTNHLKEKTDRCSELLLSkEQLQRDIQERNEEIEKLEcrvRELEQALLASAEPFP 2123
Cdd:COG4913 731 ELQDRLEAAEDLARLELR-----ALLEERFAAALGDAVERELR-ENLEERIDALRARLNRAE---EELERAMRAFNREWP 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2124 kvedqkrSGAVEADPELSlevqlqvERDATDRKQKEITN--LEEQLEQFREEL-ENKNDEVQELLMQLEiqrkesttrlq 2200
Cdd:COG4913 802 -------AETADLDADLE-------SLPEYLALLDRLEEdgLPEYEERFKELLnENSIEFVADLLSKLR----------- 856
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2201 elqQENRLFKDEIEKLGFAMKESDsvstrdqpmlFGkfaqliQEKEIEID---RLNEQFIKLQQQLK------LTTDNKV 2271
Cdd:COG4913 857 ---RAIREIKERIDPLNDSLKRIP----------FG------PGRYLRLEarpRPDPEVREFRQELRavtsgaSLFDEEL 917
|
410 420 430
....*....|....*....|....*....|...
gi 568932674 2272 IEEQKEQIQDLetqIERLMSEREHEKKQREEEV 2304
Cdd:COG4913 918 SEARFAALKRL---IERLRSEEEESDRRWRARV 947
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
218-861 |
2.24e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.03 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 218 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALID---E 294
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAEEMRARLAARKQELEEilhE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 295 LNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnlkdsw 374
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE------ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 375 letsavRRVEQETQRKLSHLQAELDEMygkqiVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNA 454
Cdd:pfam01576 154 ------RKLLEERISEFTSNLAEEEEK-----AKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 455 AINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE---QENRLSEARKSLS-TVE 530
Cdd:pfam01576 223 QIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraARNKAEKQRRDLGeELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 531 DLKAEI---VAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL-------------LFSH 594
Cdd:pfam01576 303 ALKTELedtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLeqakrnkanlekaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 595 EEELSKLKEDL--------EVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLrdl 666
Cdd:pfam01576 383 ESENAELQAELrtlqqakqDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL--- 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 667 qeclvnskSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKR 746
Cdd:pfam01576 460 --------SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 747 VLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 826
Cdd:pfam01576 532 KLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLA 611
|
650 660 670
....*....|....*....|....*....|....*...
gi 568932674 827 REYTCLLKI---RDDLEATQTKQALEYESKLRALEEEL 861
Cdd:pfam01576 612 EEKAISARYaeeRDRAEAEAREKETRALSLARALEEAL 649
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1801-2112 |
2.54e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.59 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1801 EAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAesvidgYSDEKTLFERQI 1880
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMA------MERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1881 QEKTDIIEHLEQEVLCMN-NRLQELEsdqrRVEEERQllcRQREAMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKE 1959
Cdd:pfam17380 356 EERKRELERIRQEEIAMEiSRMRELE----RLQMERQ---QKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1960 KLEVQcqaekvrgdlQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQ 2039
Cdd:pfam17380 429 QEEAR----------QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILE 498
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 2040 QEIQK-----LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2112
Cdd:pfam17380 499 KELEErkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1792-2347 |
2.94e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1792 LQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQ----KQEATESLHCLEELRERLQEESRAREQLAEELN----KAE 1863
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKiqhlEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTflleESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1864 SVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQL-------LCRQREAMRAEAGPVEQRP 1936
Cdd:pfam05483 268 DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIatkticqLTEEKEAQMEELNKAKAAH 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1937 IDAAAGAARGAEFLQETEKLMKEKLEV-QCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN--AELTDLRQQSQAL 2013
Cdd:pfam05483 348 SFVVTEFEATTCSLEELLRTEQQRLEKnEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKilAEDEKLLDEKKQF 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2014 EKQLEKMRKFLDE-QAIDREHERDVFQQEIQ------KLEHQLKAVPRIQPVSEHQAREVEQLTNHL-------KEKTDR 2079
Cdd:pfam05483 428 EKIAEELKGKEQElIFLLQAREKEIHDLEIQltaiktSEEHYLKEVEDLKTELEKEKLKNIELTAHCdklllenKELTQE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2080 CSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPEL-SLEVQLQVERDATDRKQK 2158
Cdd:pfam05483 508 ASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEK 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2159 EITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQ-QENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGK 2237
Cdd:pfam05483 588 QMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNaYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2238 FAQLIQEKEIEIDRLN-EQFIKLQQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHE---KKQREEEVEQLTGVVE- 2312
Cdd:pfam05483 668 ISEEKLLEEVEKAKAIaDEAVKLQKEIDKRCQHK-IAEMVALMEKHKHQYDKIIEERDSElglYKNKEQEQSSAKAALEi 746
|
570 580 590
....*....|....*....|....*....|....*...
gi 568932674 2313 ---KLQQEVVSTEQQREGARtlpEDEESFKHQLDKVTA 2347
Cdd:pfam05483 747 elsNIKAELLSLKKQLEIEK---EEKEKLKMEAKENTA 781
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3018-3307 |
2.98e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3018 QSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLA 3097
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3098 rEQKNSLElqwALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNtqlnllLEQQKQLLNESQQKIESQKMLHDAQLSEE 3177
Cdd:TIGR02169 755 -NVKSELK---ELEARIEELEEDLHKLEEALNDLEARLSHSRIPE------IQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3178 QGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKYKL 3257
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK---------------KEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 568932674 3258 DslqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQE 3307
Cdd:TIGR02169 890 E----RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2131-2328 |
6.44e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 6.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2131 SGAVEADPelslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTT---RLQELQQENR 2207
Cdd:COG3883 9 PTPAFADP------QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKlqaEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2208 LFKDEIEKLGFAMKESDSVSTRDQPMLFGK-FAQLIQEKEIeIDRLNEQFIKLQQQLKltTDNKVIEEQKEQIQDLETQI 2286
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSEsFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568932674 2287 ERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA 2328
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3025-3339 |
6.76e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3025 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIhflsDTLAREQKNSL 3104
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL----KKAAAAKKKAD 1421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3105 EL-QWALEKEKARSGHHEGREKEELEDLKFSLEDQKR-----------RNTQLNLLLEQQKQLLNESQQKIESQKMLHDA 3172
Cdd:PTZ00121 1422 EAkKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKaeeakkkaeeaKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3173 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERElyAQLQSREDGGQPPPALPSEDLLK-ELQKQLEEKHS-------- 3243
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKaeedknma 1579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3244 -RIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRL 3322
Cdd:PTZ00121 1580 lRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
330
....*....|....*..
gi 568932674 3323 QGLMQEFQKQELEPEEK 3339
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKK 1676
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1804-2369 |
6.93e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1804 SETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEK 1883
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1884 TDIIEHLEQEVLCMNNRLQELESDQRRVEEERQllcrqreamRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEV 1963
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK---------KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1964 QCQAEKVRGDLQKQVKALEIDVEEQVSRFIElEQEKNAEL---TDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVfqQ 2040
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAE-EAKKADEAkkkAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA--D 1513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2041 EIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLEC--RVRELEQALLAS 2118
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAlrKAEEAKKAEEAR 1593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2119 AEPFPKV-EDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRK--ES 2195
Cdd:PTZ00121 1594 IEEVMKLyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKaeED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2196 TTRLQELQQENRLFKDEIEKLGFAMKESDSVST--RDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIE 2273
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2274 EQKEQIQDLETQIERLMSEREHE-----KKQREEEVEQLTGVVEKLQQEVVST-----EQQREGARTLPEDEESFKHQLD 2343
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEkeaviEEELDEEDEKRRMEVDKKIKDIFDNfaniiEGGKEGNLVINDSKEMEDSAIK 1833
|
570 580
....*....|....*....|....*.
gi 568932674 2344 KVTAEKLVLEQQVETTNQVMTHMNNV 2369
Cdd:PTZ00121 1834 EVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
254-812 |
7.30e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 7.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 254 DLQAQISFLQEKLRAFEMEKDRKIENLNA------------KEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLG 321
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEadevleeheerrEELETLEAEIEDLRETIAETEREREELAEEVRDLRERLE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 322 GLHEqltqrnqEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnlkdswLETSAVRrveqetqrklshlqaeldem 401
Cdd:PRK02224 290 ELEE-------ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR------LEECRVA-------------------- 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 402 ygkqiVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVL 481
Cdd:PRK02224 337 -----AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 482 GEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQEnRLSEARKSLSTVEDLK-AEIVAASESRKELELKHEAEITNYKIK 560
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAE-ALLEAGKCPECGQPVEgSPHVETIEEDRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 561 LEMLEKEKNAVLDrmAESQEAELERLRTQLlfSHEEELSKLKEDLEVEHRINIEKLKDnlgihykqQIDGLQNEMNRKME 640
Cdd:PRK02224 491 VEEVEERLERAED--LVEAEDRIERLEERR--EDLEELIAERRETIEEKRERAEELRE--------RAAELEAEAEEKRE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 641 SMQCETDNlitqqnqlilENSKLRDLQEClvNSKSEEMNLQINELQKEIEILKQEEKekgtLEQEVQELQLKTEQL---E 717
Cdd:PRK02224 559 AAAEAEEE----------AEEAREEVAEL--NSKLAELKERIESLERIRTLLAAIAD----AEDEIERLREKREALaelN 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 718 KQLKEKEDDLQEKCAQLDA---ENNI--LKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETED 792
Cdd:PRK02224 623 DERRERLAEKRERKRELEAefdEARIeeAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA 702
|
570 580
....*....|....*....|...
gi 568932674 793 LQQQCLYLN---EEIEKQRNTFA 812
Cdd:PRK02224 703 LENRVEALEalyDEAEELESMYG 725
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
118-336 |
8.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 8.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 118 AQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFL 197
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 198 ELT----EQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEK 273
Cdd:COG4942 94 ELRaeleAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568932674 274 DRKIENLN---------AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQS 336
Cdd:COG4942 174 AELEALLAeleeeraalEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
465-764 |
9.04e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 9.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 465 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEV---RFLREQVQKARQTiaEQENRLSEARKSLSTVEDLKAEIVAASE 541
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMeqeRLRQEKEEKAREV--ERRRKLEEAEKARQAEMDRQAAIYAEQE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 542 sRKELELKHEAE---ITNYKIKLEMLEKEKNAV-LDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLK 617
Cdd:pfam17380 341 -RMAMERERELErirQEERKRELERIRQEEIAMeISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 618 DNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEK 697
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 698 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILK----EEKRVLEDKLKMYSpseqEERS 764
Cdd:pfam17380 500 ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKqqemEERRRIQEQMRKAT----EERS 566
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
284-945 |
1.02e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.98 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 284 EIQEKQALIDELNTRVveeeKKTVELK----NKVTTADELLG----GLHEQLTQRNQEIQSLKLELgnSQQNERKCSEEI 355
Cdd:TIGR01612 604 ELKEKIKNISDKNEYI----KKAIDLKkiieNNNAYIDELAKispyQVPEHLKNKDKIYSTIKSEL--SKIYEDDIDALY 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 356 KELMRTVEElqkrnlkdswletSAVRRVEQETqrKLSHLQAELDEMYGKqIVQMKQELINQHMSQIEELKSQhkrement 435
Cdd:TIGR01612 678 NELSSIVKE-------------NAIDNTEDKA--KLDDLKSKIDKEYDK-IQNMETATVELHLSNIENKKNE-------- 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 436 lKSDTNAAISKEQVNLMNaaiNELNVRLQETHAQKEEL----------KGELGVVLGEKSALQSQSNDLL-------EEV 498
Cdd:TIGR01612 734 -LLDIIVEIKKHIHGEIN---KDLNKILEDFKNKEKELsnkindyakeKDELNKYKSKISEIKNHYNDQInidnikdEDA 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 499 RFLREQVQKARQTIAEQENrlsEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKL-EMLEKEKNAVLDRMAE 577
Cdd:TIGR01612 810 KQNYDKSKEYIKTISIKED---EIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFaELTNKIKAEISDDKLN 886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 578 SQEAEL---ERLRTQLLFSHEEELSKLKEDLEVEHRINI-EKLKDNL-GIHYKQQIdgLQNEMNRKMESMQceTDNLITQ 652
Cdd:TIGR01612 887 DYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LKEILNKNIDTIK--ESNLIEK 962
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 653 QNQLILENS---KLRDLQECLVNSKSEEMNLQINELQKEIEILKQ--------------EEKEKGT--LEQEVQELQLKT 713
Cdd:TIGR01612 963 SYKDKFDNTlidKINELDKAFKDASLNDYEAKNNELIKYFNDLKAnlgknkenmlyhqfDEKEKATndIEQKIEDANKNI 1042
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 714 EQLEKQLKEKEDDLQEKCAQLDAEN------NILKEEK------RVLEDKLKMYSPSEqeersiavdpsTSKSADSRWQK 781
Cdd:TIGR01612 1043 PNIEIAIHTSIYNIIDEIEKEIGKNiellnkEILEEAEinitnfNEIKEKLKHYNFDD-----------FGKEENIKYAD 1111
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 782 EVAMLRKETEDLQQQclylneeIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEyesklraleeel 861
Cdd:TIGR01612 1112 EINKIKDDIKNLDQK-------IDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIE------------ 1172
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 862 lSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTElmekLEVTKREKLELSEKVSGL-----SEQLKQTHCTINSLSA 934
Cdd:TIGR01612 1173 -KKIENIVTKIDKKKNIYDEIKKLLNEIaeIEKDKTS----LEEVKGINLSYGKNLGKLflekiDEEKKKSEHMIKAMEA 1247
|
730
....*....|.
gi 568932674 935 EVRALKQEKEQ 945
Cdd:TIGR01612 1248 YIEDLDEIKEK 1258
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
282-522 |
1.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 282 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRT 361
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 362 VEELQKRnlkdswLETSAVRRVEQETQRKLSHL-------QAELDEMYGKQIVQMKQELINQHMSQIEELKSQhkremen 434
Cdd:COG4942 99 LEAQKEE------LAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARREQAEELRADLAELAAL------- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 435 tlksdtNAAISKEQVNLmNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE 514
Cdd:COG4942 166 ------RAELEAERAEL-EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 568932674 515 QENRLSEA 522
Cdd:COG4942 239 AAERTPAA 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2155-2501 |
1.10e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2155 RKQKEITnlEEQLEQFREELENKNDEVQELLMQLE-IQRK-ESTTRLQELQQENR-----LFKDEIEKLGFAMKESDSVS 2227
Cdd:TIGR02168 171 KERRKET--ERKLERTRENLDRLEDILNELERQLKsLERQaEKAERYKELKAELRelelaLLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2228 TRDQPMLFgKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQL 2307
Cdd:TIGR02168 249 KEAEEELE-ELTAELQELEEKLEELRLEVSELEE--EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2308 TGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNvlkeinfKMDQITQSLCNL 2387
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------KVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2388 NKECASNEELPSLPKESVHMTVHELGSDNLQPEDAPAQDVTKPL-EKQTSLTRLQKSPEASRTQEIeslassvgakdvEL 2466
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeELEEELEELQEELERLEEALE------------EL 466
|
330 340 350
....*....|....*....|....*....|....*
gi 568932674 2467 TQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKF 2501
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1872-2357 |
1.22e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1872 EKTLFERQIQEKTDIIEHLEQEvLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEfLQ 1951
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQ-HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH-AK 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1952 ETEKLMKEKLEVQCQAEKVRGDLQKQVKAL----------EIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMR 2021
Cdd:TIGR00618 431 KQQELQQRYAELCAAAITCTAQCEKLEKIHlqesaqslkeREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2022 KFLDEQAIDR-------------EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKE 2088
Cdd:TIGR00618 511 IHPNPARQDIdnpgpltrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2089 QLQRDIQERNEEIEKLECRVRELEQALL-------------------------------ASAEPFPKVEDQKRSGAVEAD 2137
Cdd:TIGR00618 591 NITVRLQDLTEKLSEAEDMLACEQHALLrklqpeqdlqdvrlhlqqcsqelalkltalhALQLTLTQERVREHALSIRVL 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2138 PELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLG 2217
Cdd:TIGR00618 671 PKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM 749
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2218 FAMKESDSVSTRDQpmlfgkfAQLIQEKEIEIDRLNEQfiklqQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHEK 2297
Cdd:TIGR00618 750 HQARTVLKARTEAH-------FNNNEEVTAALQTGAEL-----SHLAAEIQFF-NRLREEDTHLLKTLEAEIGQEIPSDE 816
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2298 KQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2357
Cdd:TIGR00618 817 DILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
125-536 |
1.29e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 125 LQMVEKELAEKQHDIEELTQELEEMRASfgTEGLKQLQEFEAAIKQRDGIITQLtANLQQARREKDDTMVEFLELTEQSQ 204
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKL--LQLLPLYQELEALEAELAELPERL-EELEERLEELRELEEELEELEAELA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 205 KLQIQFQHLQANETLQN-STLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKienlNAK 283
Cdd:COG4717 174 ELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK----EAR 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 284 EIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTV- 362
Cdd:COG4717 250 LLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALg 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 363 --EELQKRNLKDSWLETSAVRRV-----EQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMsQIEELKSqhKREMENT 435
Cdd:COG4717 330 lpPDLSPEELLELLDRIEELQELlreaeELEEELQLEELEQEIAALLAEAGVEDEEELRAALE-QAEEYQE--LKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 436 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRF--LREQVQKARQTIA 513
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELKAELR 486
|
410 420
....*....|....*....|...
gi 568932674 514 EQENRLSEARKSLSTVEDLKAEI 536
Cdd:COG4717 487 ELAEEWAALKLALELLEEAREEY 509
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2976-3339 |
1.33e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2976 RSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLdcSMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVA------E 3049
Cdd:PRK03918 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKI--RELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeE 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3050 LKSELAQAKLELGT---TLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKE 3126
Cdd:PRK03918 305 YLDELREIEKRLSRleeEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3127 ELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKM-------------LHDAQLSEEQGRNLGLQALLESEQV 3193
Cdd:PRK03918 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRI 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3194 RiQEMKSTLDKERELYAQLQSREDGGQPPPALPSEDLLKELQKQLEEKHSRIV--ELLSETEKY-----KLDSLQTRQQM 3266
Cdd:PRK03918 465 E-KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKS 543
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932674 3267 EKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQEKR-QQVYKLDLEGKRLQGLMQEF-----QKQELEPEEK 3339
Cdd:PRK03918 544 LKKELEKLEELKKKLAEL---EKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYlelkdAEKELEREEK 619
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
446-642 |
1.63e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 446 KEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSqsndlLEEVRFLREQVQKARQTIAEQENRLSEARKS 525
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 526 LSTVEDLKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEknavLDRMAESQEAELERLRTQLLFSHEEELSKLKEDL 605
Cdd:COG4913 684 SDDLAALEEQLEELEAELEEL----EEELDELKGEIGRLEKE----LEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190
....*....|....*....|....*....|....*..
gi 568932674 606 EvehRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESM 642
Cdd:COG4913 756 A---AALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1853-2397 |
2.12e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDG--YSDEKTLFERQIQE---KTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMra 1927
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKaiSNDDPEEIEKKIENivtKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNL-- 1223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1928 eaGPVEQRPIDAAAGAARgaEFLQETEKLMKEKLEVQCQAEKVRG------DLQKQVKALEIDVEEQVSRFIeLEQEKNA 2001
Cdd:TIGR01612 1224 --GKLFLEKIDEEKKKSE--HMIKAMEAYIEDLDEIKEKSPEIENemgiemDIKAEMETFNISHDDDKDHHI-ISKKHDE 1298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2002 ELTDLRQQSQAL------EKQLEKMRKFLDEQAID-REHERDVFQ--QEIQKLEHQLK--AVPRIQPVSEHQAREVEQLT 2070
Cdd:TIGR01612 1299 NISDIREKSLKIiedfseESDINDIKKELQKNLLDaQKHNSDINLylNEIANIYNILKlnKIKKIIDEVKEYTKEIEENN 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2071 NHLKEKTDRcSELLLSKEQLQRDIQERNEEIEKL-------EC--RVRELEQALLA----------SAEPFPK------- 2124
Cdd:TIGR01612 1379 KNIKDELDK-SEKLIKKIKDDINLEECKSKIESTlddkdidECikKIKELKNHILSeesnidtyfkNADENNEnvlllfk 1457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2125 ------------VEDQKRSGAVEADPELSlEVQLQVER-----DATDRKQKEITNLEEQLEQFREEL------------- 2174
Cdd:TIGR01612 1458 niemadnksqhiLKIKKDNATNDHDFNIN-ELKEHIDKskgckDEADKNAKAIEKNKELFEQYKKDVtellnkysalaik 1536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2175 ----ENKND------EVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPmLFGKFAQLIQ- 2243
Cdd:TIGR01612 1537 nkfaKTKKDseiiikEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLEN-FENKFLKISDi 1615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2244 --------------EKEIEIDRLNEQFIKLQQQLK-----------LTTDNKVIEEQKEQIQDLETQIERLMSEREHEKK 2298
Cdd:TIGR01612 1616 kkkindclketesiEKKISSFSIDSQDTELKENGDnlnslqeflesLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK 1695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2299 QREeeveqlTGVVEKLQQEVVSTEQQREGARTLPEDE-ESFKHQLDKVTAEKLVLEQQVETTNqvmTHMNNVLKEINFKM 2377
Cdd:TIGR01612 1696 NYE------IGIIEKIKEIAIANKEEIESIKELIEPTiENLISSFNTNDLEGIDPNEKLEEYN---TEIGDIYEEFIELY 1766
|
650 660
....*....|....*....|
gi 568932674 2378 DQITQSLCNLNKECASNEEL 2397
Cdd:TIGR01612 1767 NIIAGCLETVSKEPITYDEI 1786
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
468-796 |
2.16e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 468 AQKEELKGELGVV---LGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRlsEARKSLSTVEDLKAEIVAASESRK 544
Cdd:TIGR02169 170 RKKEKALEELEEVeenIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 545 ELElkheAEITNYKIKLEMLEKEKNAVldrmaesqEAELERLRTQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGIhY 624
Cdd:TIGR02169 248 SLE----EELEKLTEEISELEKRLEEI--------EQLLEELNKKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE-K 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 625 KQQIDGLQNEMnRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKE-------IEILKQEEK 697
Cdd:TIGR02169 314 ERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 698 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADS 777
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330
....*....|....*....
gi 568932674 778 RWQKEVAMLRKETEDLQQQ 796
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE 491
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
471-623 |
2.47e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 471 EELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR-------QTIAEQENRLsearkslstvEDLKAEIVAASESR 543
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEaeveeleAELEEKDERI----------ERLERELSEARSEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 544 KElELKHEAEITNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLFSHEEELSKLK--EDLEVEHrinIEKLKDNLG 621
Cdd:COG2433 458 RR-EIRKDREISRLDREIERLERELEE-ERERIEELKRKLERLKELWKLEHSGELVPVKvvEKFTKEA---IRRLEEEYG 532
|
..
gi 568932674 622 IH 623
Cdd:COG2433 533 LK 534
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
3015-3339 |
2.85e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3015 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLkaqhKRLKELEAFRSEVKEKTDEIhflsd 3094
Cdd:pfam01576 199 EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL----ARLEEETAQKNNALKKIREL----- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3095 tlareQKNSLELQWALEKEKARSGHHEGREK---EELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHD 3171
Cdd:pfam01576 270 -----EAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3172 AQLSE-EQGRNLGLQALLES-EQVR-----IQEMKSTLDKER-ELYAQLQSREDGGQpppalPSEDLLKELQKQLEEKHS 3243
Cdd:pfam01576 345 AQLQEmRQKHTQALEELTEQlEQAKrnkanLEKAKQALESENaELQAELRTLQQAKQ-----DSEHKRKKLEGQLQELQA 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3244 RivelLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRLQ 3323
Cdd:pfam01576 420 R----LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLE 495
|
330
....*....|....*.
gi 568932674 3324 GLMQEFQKQELEPEEK 3339
Cdd:pfam01576 496 DERNSLQEQLEEEEEA 511
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-860 |
3.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 681 QINELQKEIE----ILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDL---QEKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:COG4942 28 ELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELaalEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 754 -----MYSPSEQEERSIAVDPSTSKSADSRW----------QKEVAMLRKETEDLQQqclyLNEEIEKQRNTFAFAEKNF 818
Cdd:COG4942 108 ellraLYRLGRQPPLALLLSPEDFLDAVRRLqylkylaparREQAEELRADLAELAA----LRAELEAERAELEALLAEL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568932674 819 EVNYQELQREytclLKIRDDLEATQTKQALEYESKLRALEEE 860
Cdd:COG4942 184 EEERAALEAL----KAERQKLLARLEKELAELAAELAELQQE 221
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1782-2505 |
3.45e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1782 EELMLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNK 1861
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1862 -----------AESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLC---MNNRLQELESDQ-------RRVEEERQLLCR 1920
Cdd:pfam15921 350 qlvlanselteARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeQNKRLWDRDTGNsitidhlRRELDDRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1921 QREA----MRAEA-GPVEQRpidaAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIEL 1995
Cdd:pfam15921 430 RLEAllkaMKSECqGQMERQ----MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE-SSERTVSDLTAS 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1996 EQEK-------NAELTDLRQQSQALEKQLEKMRKfldeqaiDREHERDVfQQEIQKLEHQLKAVPRIQPVSEHQareVEQ 2068
Cdd:pfam15921 505 LQEKeraieatNAEITKLRSRVDLKLQELQHLKN-------EGDHLRNV-QTECEALKLQMAEKDKVIEILRQQ---IEN 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2069 LTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKL-------ECRVRELEQALlasaepfPKVEDQKRSGAVEADPELS 2141
Cdd:pfam15921 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFkilkdkkDAKIRELEARV-------SDLELEKVKLVNAGSERLR 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2142 LEVQLQVERDATDRKQK----EITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDEIEKLG 2217
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDG 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2218 FAMKesdsvstrdqpmlfgkfaqliqekeieidrlneqfIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEK 2297
Cdd:pfam15921 724 HAMK-----------------------------------VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2298 KQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVT-----AEKLVLEQQVETTNQVMTHMNNVlKE 2372
Cdd:pfam15921 769 EEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASlqfaeCQDIIQRQEQESVRLKLQHTLDV-KE 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2373 IN----FKMDQITQSLCNLNKECASNEELPSLPKESVHMTVHELGSDNLQPEdaPAQDVTKPLEKQTSLTRLQKSPEASR 2448
Cdd:pfam15921 848 LQgpgyTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKED--PTRDLKQLLQELRSVINEEPTVQLSK 925
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 2449 TQEiESLASSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKFAAAL 2505
Cdd:pfam15921 926 AED-KGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSREPVLL 981
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
497-756 |
3.66e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 497 EVRFLREQVQKARqtIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEItnykikLEMLEKEKNAVLDRMa 576
Cdd:PRK05771 32 HIEDLKEELSNER--LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL------IKDVEEELEKIEKEI- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 577 ESQEAELERLRTQLlfsheEELSKLKEDLEVEHRINIEkLKDNLGIHYKQQIDGLQNEmnRKMESMQCETDNLitqqNQL 656
Cdd:PRK05771 103 KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVFVGTVPE--DKLEELKLESDVE----NVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 657 ILENSKLRDLqeCLVNSKSEEMNLQINELqKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDA 736
Cdd:PRK05771 171 YISTDKGYVY--VVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|
gi 568932674 737 ENNILKEEKRVLEDKLKMYS 756
Cdd:PRK05771 248 ELLALYEYLEIELERAEALS 267
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
538-737 |
4.15e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 4.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 538 AASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEvEHRINIEKLK 617
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 618 DNLGIH---YKQQIDGLQ-----------------NEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEcLVNSKSEE 677
Cdd:COG4942 97 AELEAQkeeLAELLRALYrlgrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-ELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 678 MNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAE 737
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1986-2216 |
4.38e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1986 EEQVSRFIELEQEKNAE-LTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKL-EHQLKAVPRIQPVSEHQA 2063
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELiKDVEEELEKIEKEIKELE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2064 REVEQLTNHLKEKTDRCSEL------------LLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEP-------FPK 2124
Cdd:PRK05771 107 EEISELENEIKELEQEIERLepwgnfdldlslLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKgyvyvvvVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2125 VEDQKRSGAVEADPELSlEVQLQVERDATDR---KQKEITNLEEQLEQFREELENKNDEVQELLMQ----LEIQRKESTT 2197
Cdd:PRK05771 187 KELSDEVEEELKKLGFE-RLELEEEGTPSELireIKEELEEIEKERESLLEELKELAKKYLEELLAlyeyLEIELERAEA 265
|
250 260
....*....|....*....|....*.
gi 568932674 2198 RLQELqQENRLF-------KDEIEKL 2216
Cdd:PRK05771 266 LSKFL-KTDKTFaiegwvpEDRVKKL 290
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
625-750 |
4.47e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 48.48 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 625 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSKLRDLQECLVNSKSEEMNLQinELQKEIEILKQEE----KEK- 699
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELL---NSIKPKLRDRKDALEEELRQLK--QLEDELEDCDPTEldraKEKl 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568932674 700 GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLED 750
Cdd:smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1971-2215 |
4.53e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1971 RGDLQKQVKALEIDvEEQVSRFIELEQEKNAELTDLRQQSQALEKQ---LEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2047
Cdd:PLN02939 99 RASMQRDEAIAAID-NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNillLNQARLQALEDLEKILTEKEALQGKINILEM 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2048 QL-KAVPRIQPVSEHQAR------EVEQLTNHLKEK--TDRCSELLLSKE---------QLQRDIQERNEEI-------- 2101
Cdd:PLN02939 178 RLsETDARIKLAAQEKIHveileeQLEKLRNELLIRgaTEGLCVHSLSKEldvlkeenmLLKDDIQFLKAELievaetee 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2102 -----EK----LECRVRELEQALLASAEPFPKVEDQKrsgaVEADPELSLEVQLQVERdATDRKQKEITNLEEQleqfrE 2172
Cdd:PLN02939 258 rvfklEKerslLDASLRELESKFIVAQEDVSKLSPLQ----YDCWWEKVENLQDLLDR-ATNQVEKAALVLDQN-----Q 327
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568932674 2173 ELENKNDEVQELLMQLEIQrKESTTRLQELQQENRLFKDEIEK 2215
Cdd:PLN02939 328 DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQA 369
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1854-2412 |
4.55e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1854 QLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRV-EEERQLLCRQREAMRAEAGP- 1931
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIlELDQELRKAERELSKAEKNSl 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1932 VEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKvrgdlQKQVKALEIDVEEQVSRFIELEQEKNAELTDLR---Q 2008
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTT-----RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfP 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2009 QSQALEKQLEKMRKfldEQAIDREHERDVfQQEIQKLEHQlkavpriqpvSEHQAREVEQLTNHLKEKTDRCSElLLSKE 2088
Cdd:TIGR00606 571 NKKQLEDWLHSKSK---EINQTRDRLAKL-NKELASLEQN----------KNHINNELESKEEQLSSYEDKLFD-VCGSQ 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2089 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLE 2168
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2169 QFREELENKNDEVQEL--LMQLEIQRKESttRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmlfgKFAQLIQEKE 2246
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLapGRQSIIDLKEK--EIPELRNKLQKVNRDIQRLKNDIEEQET-----------LLGTIMPEEE 782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2247 IEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLEtqIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2326
Cdd:TIGR00606 783 SAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD--LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2327 GARTLPEDEESFKHQLDKVTAEKLVLEQQVETtnqVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELPSLPKESVH 2406
Cdd:TIGR00606 861 HLKSKTNELKSEKLQIGTNLQRRQQFEEQLVE---LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK 937
|
....*.
gi 568932674 2407 MTVHEL 2412
Cdd:TIGR00606 938 KAQDKV 943
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
223-862 |
4.59e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 223 TLSRTATDLLQAKRQIfTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKienlnakEIQEKQALIDELNTRVVEE 302
Cdd:COG4913 236 DLERAHEALEDAREQI-ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR-------RLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 303 EKKTVELKNKVTTADELLGGLHEQLTQR-NQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVR 381
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALG--------LPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 382 RVEQETQRKLSHLQAELDEMYGKQivqmkQELINQHMSQIEELKSQH---KREMENTLKSDTNaaISKEQVNLMNAAINE 458
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELrelEAEIASLERRKSN--IPARLLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 459 LNVRlqethaqKEELK--GELGVVLGEKS--------ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 528
Cdd:COG4913 453 LGLD-------EAELPfvGELIEVRPEEErwrgaierVLGGFALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 529 VEDLKAEivAASESRKeLELKhEAEITNYkiklemLEKEKNAVLDRM-AESQEaELERLRTQL----LFSHEEEL-SKLK 602
Cdd:COG4913 526 PERPRLD--PDSLAGK-LDFK-PHPFRAW------LEAELGRRFDYVcVDSPE-ELRRHPRAItragQVKGNGTRhEKDD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 603 EDLEVEHRI----NIEKLKdnlgiHYKQQIDGLQNEMNrkmesmqcETDNLITQQNQLILENSKLRDLQECLVNSKSEEM 678
Cdd:COG4913 595 RRRIRSRYVlgfdNRAKLA-----ALEAELAELEEELA--------EAEERLEALEAELDALQERREALQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 679 NL-----QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLkekeDDLQEKCAQLDAENNILKEEKRVLEDKLk 753
Cdd:COG4913 662 DVasaerEIAELEAELERLDASSDDLAALEEQLEELEAELEELEEEL----DELKGEIGRLEKELEQAEEELDELQDRL- 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 754 myspseqEERSIAVDPSTSKSADSRWQKevAMLRKETEDLQQQclyLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLL 833
Cdd:COG4913 737 -------EAAEDLARLELRALLEERFAA--ALGDAVERELREN---LEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
650 660 670
....*....|....*....|....*....|
gi 568932674 834 K-IRDDLEATQtkqalEYESKLRALEEELL 862
Cdd:COG4913 805 AdLDADLESLP-----EYLALLDRLEEDGL 829
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
535-867 |
4.97e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 4.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 535 EIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQ----EAELERLRTQLLFSHEEELSKLKEDLEVE-- 608
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIidleELKLQELKLKEQAKKALEYYQLKEKLELEee 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 609 ---------HRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQcETDNLITQQNQLILENSKLRDLQECLVNSKSEEMN 679
Cdd:pfam02463 225 yllyldylkLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 680 LQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQ------EKCAQLDAENNILKEEKRVLEDKLK 753
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREaeeeeeEELEKLQEKLEQLEEELLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 754 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREyTCLL 833
Cdd:pfam02463 384 ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL-KLLK 462
|
330 340 350
....*....|....*....|....*....|....
gi 568932674 834 KIRDDLEATQTKQALEYESKLRALEEELLSKRGN 867
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2087-2349 |
5.53e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2087 KEQLQRDIQERNEEIEKLECRVRELEQAL------LASAEPFPKVEDQKR--SGAVEADPELSLEVQLQverdatdRKQK 2158
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLerlrreREKAERYQALLKEKReyEGYELLKEKEALERQKE-------AIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2159 EITNLEEQLEQFREELENKNDEVQEllmqLEIQRKESTTRLQEL-QQENRLFKDEIEKLgfamkESDSVSTRDQpmlfgk 2237
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEE----IEQLLEELNKKIKDLgEEEQLRVKEKIGEL-----EAEIASLERS------ 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2238 faqlIQEKEIEIDRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMSEREhekkQREEEVEQLTGVVEKLQQE 2317
Cdd:TIGR02169 310 ----IAEKERELEDAEERLAKLEAE---------IDKLLAEIEELEREIEEERKRRD----KLTEEYAELKEELEDLRAE 372
|
250 260 270
....*....|....*....|....*....|..
gi 568932674 2318 VvstEQQREGARTLPEDEESFKHQLDKVTAEK 2349
Cdd:TIGR02169 373 L---EEVDKEFAETRDELKDYREKLEKLKREI 401
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
484-722 |
5.81e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 484 KSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVeDLKAEIVAASESRKELelkhEAEITNYKIKLEM 563
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV-DLSEEAKLLLQQLSEL----ESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 564 LEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEhrinIEKLKDNlgiH-----YKQQIDGLQNEMNRK 638
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL----SARYTPN---HpdviaLRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 639 MESMqcetdnLITQQNQLILENSKLRDLQEclvnskseemnlQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEK 718
Cdd:COG3206 311 AQRI------LASLEAELEALQAREASLQA------------QLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
....
gi 568932674 719 QLKE 722
Cdd:COG3206 373 RLEE 376
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1853-2059 |
5.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESD----QRRVEEERQLLCRQREAM--R 1926
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaelRAELEAQKEELAELLRALyrL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1927 AEAGPVE-----QRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQvsrfieleQEKNA 2001
Cdd:COG4942 117 GRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL--------EEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 2002 ELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVS 2059
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
580-866 |
6.79e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 580 EAELERLRTQLlfSHEEELSKLKEDLEvehriniEKLKDNLGIHYKQQIDGLQ------NEMNRKMESMQCETDNLITQQ 653
Cdd:TIGR02168 199 ERQLKSLERQA--EKAERYKELKAELR-------ELELALLVLRLEELREELEelqeelKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 654 NQLILENSKLRDLQEcLVNSKSEEMNLQINELQKEIEILKQE----EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 729
Cdd:TIGR02168 270 EELRLEVSELEEEIE-ELQKELYALANEISRLEQQKQILRERlanlERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 730 KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRN 809
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 810 TFAFAEKN-FEVNYQELQREYTCLLKIRDDLEA---TQTKQALEYESKLRALEEELLSKRG 866
Cdd:TIGR02168 429 KLEEAELKeLQAELEELEEELEELQEELERLEEaleELREELEEAEQALDAAERELAQLQA 489
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
3013-3340 |
6.85e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 6.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3013 SMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgttlkAQHKRLKELEAFRSEVKEKTDEIHFL 3092
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-----ERRRKLEEAEKARQAEMDRQAAIYAE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3093 SDTLAREQKNSLElqwALEKEKARSGHHEGREKE---------ELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKI 3163
Cdd:pfam17380 339 QERMAMERERELE---RIRQEERKRELERIRQEEiameisrmrELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3164 ESQKM-LHDAQLSEEQGRNLGLQaLLESEQVRiqEMKSTLDKERELYAQLQS-REDGGQPPPALPSEDLLKELQKQLEEK 3241
Cdd:pfam17380 416 QQQKVeMEQIRAEQEEARQREVR-RLEEERAR--EMERVRLEEQERQQQVERlRQQEEERKRKKLELEKEKRDRKRAEEQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3242 HSRIVEL-LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ-----EANTQGQKKMQElQSKVEELQRQLQEKRQQVYKL 3315
Cdd:pfam17380 493 RRKILEKeLEERKQAMIEEERKRKLLEKEMEERQKAIYEEErrreaEEERRKQQEMEE-RRRIQEQMRKATEERSRLEAM 571
|
330 340
....*....|....*....|....*.
gi 568932674 3316 DLEGKRLQGLMQ-EFQKQELEPEEKP 3340
Cdd:pfam17380 572 EREREMMRQIVEsEKARAEYEATTPI 597
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
496-1062 |
7.02e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 7.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 496 EEVRFLRE--QVQKARQtiAEQENRLSEARKSlstVEDLKAEIVA-ASESRKELELKHEAEITNYKIKLEMLEKEKNAVL 572
Cdd:PTZ00121 1191 EELRKAEDarKAEAARK--AEEERKAEEARKA---EDAKKAEAVKkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 573 DRMAESQEAELERLRTQLlfSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLIT 651
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADEL--KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 652 QQNQLILENSKLRDLQEClVNSKSEEMNLQINELQKEIEILKQ--EEKEKG-TLEQEVQELQLKTEQLEK--QLKEKEDD 726
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEA-AEEKAEAAEKKKEEAKKKADAAKKkaEEKKKAdEAKKKAEEDKKKADELKKaaAAKKKADE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 727 LQEKCAQLDAENNILK---------EEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEvamLRKETEDLQQQC 797
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE---AKKKAEEAKKKA 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 798 --LYLNEEIEKQRNTFAFAE---KNFEVNYQELQREYTCLLKIRDDLEATQTKQALEY---------ESKLRALEEELLS 863
Cdd:PTZ00121 1500 deAKKAAEAKKKADEAKKAEeakKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekkkaEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 864 KRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRalkQEK 943
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK---KAE 1656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 944 EQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEE-------SKPMIEDKIPFKESG 1016
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkaeelKKAEEENKIKAEEAK 1736
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 568932674 1017 REQlllPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEA 1062
Cdd:PTZ00121 1737 KEA---EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1973-2205 |
7.43e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1973 DLQKQVKALE------IDVEEQVSRFIELEqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDReherdvFQQEIQKLE 2046
Cdd:COG4913 229 ALVEHFDDLErahealEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQRRLEL------LEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2047 HQLKAVpriqpvsEHQAREVEQLTNHLKEKTDRCSELLLS-----KEQLQRDIQERNEEIEKLECRVRELEQALLAsaep 2121
Cdd:COG4913 302 AELARL-------EAELERLEARLDALREELDELEAQIRGnggdrLEQLEREIERLERELEERERRRARLEALLAA---- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2122 fpkvedqkrsgaveadpelsleVQLQVERDAtdrkqKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQE 2201
Cdd:COG4913 371 ----------------------LGLPLPASA-----EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
....
gi 568932674 2202 LQQE 2205
Cdd:COG4913 424 LEAE 427
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
276-867 |
7.53e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 276 KIENLNAKEIQEkqalideLNTRVVEEEKKTVELKNKVTTADELLG---GLHEQLTQRNQEIQSLKLELGNSQQNERKCS 352
Cdd:TIGR01612 1059 EIEKEIGKNIEL-------LNKEILEEAEINITNFNEIKEKLKHYNfddFGKEENIKYADEINKIKDDIKNLDQKIDHHI 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 353 EEIKELMRTVE------ELQKRNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQhMSQIEELKS 426
Cdd:TIGR01612 1132 KALEEIKKKSEnyideiKAQINDLEDV-ADKAISNDDPEEIEKKIENIVTKIDKK--KNIYDEIKKLLNE-IAEIEKDKT 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 427 QHKR---------EMENTL---KSDTNAAISKEQVNLMNAAINELNvrlqETHAQKEELKGELGVVLGEKSALQ--SQSN 492
Cdd:TIGR01612 1208 SLEEvkginlsygKNLGKLfleKIDEEKKKSEHMIKAMEAYIEDLD----EIKEKSPEIENEMGIEMDIKAEMEtfNISH 1283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 493 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVA-ASESRkelelKHEAEITNYKIKLE------MLE 565
Cdd:TIGR01612 1284 DDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnLLDAQ-----KHNSDINLYLNEIAniynilKLN 1358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 566 KEKNaVLDRMAESQEaELERLRTQL---LFSHEEELSKLKEDLEVEH-RINIEKLKDNLGIH--------YKQQIDGLQN 633
Cdd:TIGR01612 1359 KIKK-IIDEVKEYTK-EIEENNKNIkdeLDKSEKLIKKIKDDINLEEcKSKIESTLDDKDIDecikkikeLKNHILSEES 1436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 634 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEI---------------------EIL 692
Cdd:TIGR01612 1437 NIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIdkskgckdeadknakaieknkELF 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 693 KQEEKEKGTLEQEVQELQLK---------TEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEer 763
Cdd:TIGR01612 1517 EQYKKDVTELLNKYSALAIKnkfaktkkdSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKA-- 1594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 764 siAVDPSTSKSADSRWQKEVAMLRKETEDlqqqCLYLNEEIEKQRNTFAFAEKNFEV-----NYQELQREYTCLLKIRDD 838
Cdd:TIGR01612 1595 --AIDIQLSLENFENKFLKISDIKKKIND----CLKETESIEKKISSFSIDSQDTELkengdNLNSLQEFLESLKDQKKN 1668
|
650 660
....*....|....*....|....*....
gi 568932674 839 LEaTQTKQALEYESKLRALEEELLSKRGN 867
Cdd:TIGR01612 1669 IE-DKKKELDELDSEIEKIEIDVDQHKKN 1696
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1526-2104 |
7.97e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1526 LNEQLEDMRQELVRQYEEHQQATEMLRQAHM------QQMERQREDQEQLQEEIKRLNEQLAQ-KSSIDTEHVVSERERV 1598
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAelarleQDIARLEERRRELEERLEELEEELAElEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1599 LLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSpEDALLDRNLSNERYALKKANNRLLKIL 1678
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1679 LEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDEsipsypgtaiaTHDSIWSKVTE 1758
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE-----------LLEELAEAAAR 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1759 EGAELSQRLVRSGFAGPVIDPENEELMLNISSRLQ------AAVEKLLEAISETNTQLEHAKVTQTELMRESF--RQKQE 1830
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYlkAAKAG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1831 ATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEvlcmNNRLQELESDQRR 1910
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA----LRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1911 VEEERQLlcrqreamraeagpVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVS 1990
Cdd:COG1196 649 VTLEGEG--------------GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1991 RFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHE---RDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVE 2067
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIEALGPVNLLAIEEYEELE 794
|
570 580 590
....*....|....*....|....*....|....*..
gi 568932674 2068 QLTNHLKEKTDrcsELLLSKEQLQRDIQERNEEIEKL 2104
Cdd:COG1196 795 ERYDFLSEQRE---DLEEARETLEEAIEEIDRETRER 828
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2000-2403 |
8.14e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 8.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2000 NAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVE-QLTNHLKEKTD 2078
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVELNKLEKQKKEN----KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELEnELNLLEKEKLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2079 RCSELLLSKEQLQRD------IQERNEEIEKLECRVRELEQAllasaepFPKVEDQKRSgaveadpelsLEVQLQVERDA 2152
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLelllsnLKKKIQKNKSLESQISELKKQ-------NNQLKDNIEK----------KQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2153 TDRKQKEITNLEEQLEQFREELENKNDEVQE---LLMQLEIQRKESTTRLQELQQE-----NRLFKDEIEKlgfamKESD 2224
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKN-----QEKK 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2225 SVSTRDQpmlfgkfaqlIQEKEIEIDRLNEQFIKLQQQLK-LTTDNkviEEQKEQIQDLETQIERLMSEREHEK------ 2297
Cdd:TIGR04523 323 LEEIQNQ----------ISQNNKIISQLNEQISQLKKELTnSESEN---SEKQRELEEKQNEIEKLKKENQSYKqeiknl 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2298 -----------KQREEEVEQLTGVVEKLQQEVVSTEQQREgarTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHM 2366
Cdd:TIGR04523 390 esqindleskiQNQEKLNQQKDEQIKKLQQEKELLEKEIE---RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
410 420 430
....*....|....*....|....*....|....*...
gi 568932674 2367 NNVLKEINFKMDQITQSLCNLNKECASNE-ELPSLPKE 2403
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEkELKKLNEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2145-2357 |
8.30e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2145 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEK----LGFAM 2220
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAqkeeLAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2221 KESDSVSTRDQPMLFGKFAQLiqekeieidrlnEQFIKLQQQLKlttdnKVIEEQKEQIQDLETQIERLMSEREHEKKQR 2300
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDF------------LDAVRRLQYLK-----YLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 2301 EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2357
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3071-3339 |
9.10e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3071 RLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEdqkrrntqlnllle 3150
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-------------- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3151 qqkqllnESQQKIESQKmlhdaqlseeqgrnlglqALLESEQVRIQEMKSTLDKERELYAQLQSREDGGQPPpalpseDL 3230
Cdd:TIGR02169 748 -------SLEQEIENVK------------------SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP------EI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3231 LKELQKqLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3310
Cdd:TIGR02169 797 QAELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
250 260
....*....|....*....|....*....
gi 568932674 3311 QVYKLDLEGKRLQGLMQEFQKQELEPEEK 3339
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERK 904
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
325-545 |
9.45e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 9.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 325 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnLKDSWLETSAVRRVEQETQRKLSHLQAELDE---M 401
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAqkeE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 402 YGKQIVQMkqelinQHMSQIEELK----SQHKREMENTLK--SDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKG 475
Cdd:COG4942 106 LAELLRAL------YRLGRQPPLAlllsPEDFLDAVRRLQylKYLAPAR-REQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 476 ELgvvlgekSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKE 545
Cdd:COG4942 179 LL-------AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1966-2189 |
9.66e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 9.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1966 QAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNaeLTDLRQQSQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKL 2045
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSE----LESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2046 EHQLKAVPRIQPvSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEpfpkv 2125
Cdd:COG3206 246 RAQLGSGPDALP-ELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLE----- 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932674 2126 edqkrsgaVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLE 2189
Cdd:COG3206 320 --------AELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1950-2358 |
1.05e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1950 LQETEKLMKEKlevqcqaEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAI 2029
Cdd:TIGR00606 711 LKSTESELKKK-------EKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2030 DREHERDVfqQEIQKLEHQLKAVPR--IQPVSEHQA----REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEK 2103
Cdd:TIGR00606 784 AKVCLTDV--TIMERFQMELKDVERkiAQQAAKLQGsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2104 LECRVRELEQALLASAEPFpkvedQKRSGAVEADPELSLEVQlqverdATDRKQKEITNLEEQLEQFREELENKNDEVqe 2183
Cdd:TIGR00606 862 LKSKTNELKSEKLQIGTNL-----QRRQQFEEQLVELSTEVQ------SLIREIKDAKEQDSPLETFLEKDQQEKEEL-- 928
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2184 llmqleIQRKESTTRLQelQQENRLFKDEIEKLGFAMKESDSVSTRdqpmlfGKFAQLIQeKEIEIDRLNEQFIKLQQQL 2263
Cdd:TIGR00606 929 ------ISSKETSNKKA--QDKVNDIKEKVKNIHGYMKDIENKIQD------GKDDYLKQ-KETELNTVNAQLEECEKHQ 993
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2264 K-----LTTDNKVIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR--EGARTLPEDEE 2336
Cdd:TIGR00606 994 EkinedMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKleENIDLIKRNHV 1071
|
410 420
....*....|....*....|..
gi 568932674 2337 SFKHQLDKVTAEKLVLEQQVET 2358
Cdd:TIGR00606 1072 LALGRQKGYEKEIKHFKKELRE 1093
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
652-763 |
1.19e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 652 QQNQLILENSKLRdlqeclVNSKSEEMNLQINElqkEIEILKQE-EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEK 730
Cdd:PRK12704 38 EEAKRILEEAKKE------AEAIKKEALLEAKE---EIHKLRNEfEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|...
gi 568932674 731 CAQLDAENNILKEEKRVLEDKLKMYSPSEQEER 763
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1986-2350 |
1.21e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1986 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKLEHQLKAVpriqpvsEHQARE 2065
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPELREELEKL-------EKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2066 VEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaveadpelsLEVQ 2145
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-----------LSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2146 LQVERDATDRKQKEITNLEEQLEQFRE---ELENKNDEVQEllmqLEIQRKESTTRLQELQQENRLFKDEIEKlgfaMKE 2222
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEE----LKKKLKELEKRLEELEERHELYEEAKAK----KEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2223 SDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDL---------------ETQIE 2287
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA--RIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRK 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932674 2288 RLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA------RTLPEDEESFKHQLDKVTAEKL 2350
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklKELAEQLKELEEKLKKYNLEEL 520
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
250-937 |
1.42e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 250 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEK-------QALIDELNTRVVEEEKKTVELKNKVTTADELLGG 322
Cdd:TIGR00606 279 KQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKerelvdcQRELEKLNKERRLLNQEKTELLVEQGRLQLQADR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 323 LHEQLTQRNQEIQSLKLELGNSQQNERKCSE-EIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEM 401
Cdd:TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 402 ygKQIVQMKQELINQHMSQIeelksQHKREMENTLKSDTNAAISKEQvnlmnaainelNVRLQETHAQKEELKGELGVVL 481
Cdd:TIGR00606 439 --GRTIELKKEILEKKQEEL-----KFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTETLK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 482 GEKSALQSQSNDLLEEVRFLREQVqkarqtiaEQENRLSEARKSLSTVEDLKA---EIVAASESRKELELKHEAEITNYK 558
Cdd:TIGR00606 501 KEVKSLQNEKADLDRKLRKLDQEM--------EQLNHHTTTRTQMEMLTKDKMdkdEQIRKIKSRHSDELTSLLGYFPNK 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 559 IKLE----MLEKEKNAVLDRMAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EVEHRINIEKLKDNLGIHY 624
Cdd:TIGR00606 573 KQLEdwlhSKSKEINQTRDRLAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 625 KQQ--IDGLQNEMNRKMESMQ------CETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEIL---- 692
Cdd:TIGR00606 653 KQRamLAGATAVYSQFITQLTdenqscCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlgla 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 693 KQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKM---YSPSEQEERSIAVDP 769
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMerfQMELKDVERKIAQQA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 770 STSKSADSrwQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRddlEATQTKQALE 849
Cdd:TIGR00606 813 AKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG---TNLQRRQQFE 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 850 YESKLRALEEELLSKrgnpaAPKGKSSGIFPSETLeigevVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTI 929
Cdd:TIGR00606 888 EQLVELSTEVQSLIR-----EIKDAKEQDSPLETF-----LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957
|
....*...
gi 568932674 930 NSLSAEVR 937
Cdd:TIGR00606 958 KDIENKIQ 965
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
379-956 |
1.44e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 379 AVRRVEQETQRKLSHLQAELDEMYGKQIVqmkqELINQHMSQIEELKSQHKREMENTLKS----DTNAAI------SKEQ 448
Cdd:PRK02224 177 GVERVLSDQRGSLDQLKAQIEEKEEKDLH----ERLNGLESELAELDEEIERYEEQREQAretrDEADEVleeheeRREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 449 VNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 528
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 529 VEdlkaeiVAASEsrkelelkHEAEITNYKIKLEMLE------KEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSK 600
Cdd:PRK02224 333 CR------VAAQA--------HNEEAESLREDADDLEeraeelREEAAELESELEEAREAVEDRREEIeeLEEEIEELRE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 601 LKEDLEVEhrinIEKLKDNLgihykqqiDGLQNEMNRKMESMQCETDNLITQQNQlILENSKLRDLQECLVNSkseemnl 680
Cdd:PRK02224 399 RFGDAPVD----LGNAEDFL--------EELREERDELREREAELEATLRTARER-VEEAEALLEAGKCPECG------- 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 681 QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEdDLQEKCAQLDAenniLKEEKRVLEDKLkmyspSEQ 760
Cdd:PRK02224 459 QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIER----LEERREDLEELI-----AER 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 761 EERsiaVDPSTSKSADSRwqKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQReytcLLKIRDDL- 839
Cdd:PRK02224 529 RET---IEEKRERAEELR--ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES----LERIRTLLa 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 840 ---EATQTKQAL-EYESKLRALEEE----LLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLEL 911
Cdd:PRK02224 600 aiaDAEDEIERLrEKREALAELNDErrerLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568932674 912 SEKVSGLSEQLKqthctinslsaEVRALKQEKEQLLLRCGELELL 956
Cdd:PRK02224 680 QAEIGAVENELE-----------ELEELRERREALENRVEALEAL 713
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1521-2323 |
1.45e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1521 SRQLILNEQLEDMRQELVRQyEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRL--NEQLAQKSSIdtehvvsererv 1598
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRVKEKI------------ 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1599 llEELEAlkQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKIL 1678
Cdd:TIGR02169 297 --GELEA--EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1679 LEVVKTTSAAeetigrhvlgildrsskgqtassllWRSEADASATtcAPEDCARAMDESIPSYpgtaiathdsiwSKVTE 1758
Cdd:TIGR02169 373 LEEVDKEFAE-------------------------TRDELKDYRE--KLEKLKREINELKREL------------DRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1759 EGAELSQRLVRSGFAGPVIDPENEElmlnissrLQAAVEKLLEAISETNTQLEhakvtQTELMRESFRQKQEATESlhcl 1838
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINE--------LEEEKEDKALEIKKQEWKLE-----QLAADLSKYEQELYDLKE---- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1839 eELRERLQEESRAREQLAE---ELNKAESVIDGYSDEKTLFERQIQ----EKTDIIEHLEQEVLCMN----NRLQELESD 1907
Cdd:TIGR02169 477 -EYDRVEKELSKLQRELAEaeaQARASEERVRGGRAVEEVLKASIQgvhgTVAQLGSVGERYATAIEvaagNRLNNVVVE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1908 QRRVEEERQLLCRQREAMRAEAGP-----VEQRPIDAAAGAARGA------EFLQETEKLMK----EKLEVQCQAEKVRG 1972
Cdd:TIGR02169 556 DDAVAKEAIELLKRRKAGRATFLPlnkmrDERRDLSILSEDGVIGfavdlvEFDPKYEPAFKyvfgDTLVVEDIEAARRL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1973 DLQKQVKALEIDVEEQ----------VSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEI 2042
Cdd:TIGR02169 636 MGKYRMVTLEGELFEKsgamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI----ENRLDELSQEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2043 QKLEHQLKAVP-RIQPVSEHQAREVEQLTNhLKEKTDRCSELLLSKEQ----LQRDIQERNEEIEKLECRVRELEQALla 2117
Cdd:TIGR02169 712 SDASRKIGEIEkEIEQLEQEEEKLKERLEE-LEEDLSSLEQEIENVKSelkeLEARIEELEEDLHKLEEALNDLEARL-- 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2118 SAEPFPKVEDQKRsgaveadpELSLEVQLQVER-DATDRKQKEITNLEEQLEQFREELENKNDEvqellmqLEIQRKEST 2196
Cdd:TIGR02169 789 SHSRIPEIQAELS--------KLEEEVSRIEARlREIEQKLNRLTLEKEYLEKEIQELQEQRID-------LKEQIKSIE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2197 TRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmlfgkfaqliQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQK 2276
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLES-----------------RLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 568932674 2277 EQIQDLETQIERLMSEREH--EKKQREEEVEQLTGVVEKLQQEVVSTEQ 2323
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEieDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2062-2329 |
1.56e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2062 QAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEqallasaepfpkvedqkrsgaveadpels 2141
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2142 levqlqverdatdrkqKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfkdeIEKLGFAMK 2221
Cdd:COG4942 69 ----------------RRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR-----QPPLALLLS 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2222 ESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERLMSEREHE 2296
Cdd:COG4942 128 PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELeaeraELEALLAELEEERAALEALKAERQKLLARLEKE 207
|
250 260 270
....*....|....*....|....*....|...
gi 568932674 2297 KKQREEEVEQLTGVVEKLQQEVVSTEQQREGAR 2329
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
253-752 |
1.83e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 253 EDLQAQISFLQEKLRAFEMEKDRKIENLNAKEiQEKQALIDELNTRVVEEEKKTvELKNKVTTADELLGGLHEQltqrNQ 332
Cdd:PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAM-DDYNNLKSALNELSSLEDMKN-RYESEIKTAESDLSMELEK----NN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 333 EIQSLKLELGNSQQNE-RKCSEEIKELMRTVEELQkrNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQ-----I 406
Cdd:PRK01156 274 YYKELEERHMKIINDPvYKNRNYINDYFKYKNDIE--NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKsryddL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 407 VQMKQELINQHM---SQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE 483
Cdd:PRK01156 352 NNQILELEGYEMdynSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 484 KSALQSQSNDLLEEVRFLR--------------EQVQKARQTIAEQENRL-SEARKSLSTVEDLKAEIVAASESRKELEL 548
Cdd:PRK01156 432 IRALRENLDELSRNMEMLNgqsvcpvcgttlgeEKSNHIINHYNEKKSRLeEKIREIEIEVKDIDEKIVDLKKRKEYLES 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 549 KHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAEL--ERLRTQLLFSHEEELSKLKED----LEVEHRINIEKL---KDN 619
Cdd:PRK01156 512 EEINKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLKLEDLDSKRTSwlnaLAVISLIDIETNrsrSNE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 620 LGIHYKQQIDGLqNEMNRKMESMQCETDNLITQ-QNQLILENSKLRDLQeclvnskseEMNLQINELQKEIEILKQEEKE 698
Cdd:PRK01156 592 IKKQLNDLESRL-QEIEIGFPDDKSYIDKSIREiENEANNLNNKYNEIQ---------ENKILIEKLRGKIDNYKKQIAE 661
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 699 KGTLEQEVQELQLKTEQLEKQLKEKE---DDLQEKCAQLDAENNILKEEKRVLEDKL 752
Cdd:PRK01156 662 IDSIIPDLKEITSRINDIEDNLKKSRkalDDAKANRARLESTIEILRTRINELSDRI 718
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2086-2328 |
1.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2086 SKEQLQRDIQERNEEIEKLECRVRELEQAllasaepfpkvedqkrsgaveadpELSLEVQLQVERDATDRKQKEITNLEE 2165
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKE------------------------EKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2166 QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfkdeIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEK 2245
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR-----QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2246 EIEIDRLNEQFIKLQQQLKLTTD----------------NKVIEEQKEQIQDLETQIERLmserEHEKKQREEEVEQLTG 2309
Cdd:COG4942 152 AEELRADLAELAALRAELEAERAeleallaeleeeraalEALKAERQKLLARLEKELAEL----AAELAELQQEAEELEA 227
|
250
....*....|....*....
gi 568932674 2310 VVEKLQQEVVSTEQQREGA 2328
Cdd:COG4942 228 LIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1758-2184 |
1.89e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1758 EEGAELSQRLVRSGFAgpviDPENEELMLNISSrLQAAVEKLLEAISETNTQLEHAKvTQTELMRESFRQKQEATESLHC 1837
Cdd:PRK02224 290 ELEEERDDLLAEAGLD----DADAEAVEARREE-LEDRDEELRDRLEECRVAAQAHN-EEAESLREDADDLEERAEELRE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1838 LEELRERLQEESR-AREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQR----RVE 1912
Cdd:PRK02224 364 EAAELESELEEAReAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtareRVE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1913 EERQLLcrqreamraEAG--PVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEI-----DV 1985
Cdd:PRK02224 444 EAEALL---------EAGkcPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAedrieRL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1986 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQ---AIDREHERDVFQQEIQKLEHQLKAVP-RIQpvseh 2061
Cdd:PRK02224 515 EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKreaAAEAEEEAEEAREEVAELNSKLAELKeRIE----- 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2062 QAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAepfpkVED--QKRSGAVEADPE 2139
Cdd:PRK02224 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR-----IEEarEDKERAEEYLEQ 664
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568932674 2140 LslEVQLQVERDATDRKQKEITNLE---EQLEQFREELENKNDEVQEL 2184
Cdd:PRK02224 665 V--EEKLDELREERDDLQAEIGAVEnelEELEELRERREALENRVEAL 710
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2018-2194 |
2.14e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2018 EKMRKFLDEQAIDreherdvfqQEIQKLEHQLKAVPRiqpvsehqarEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2097
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2098 NEEIEKLECRVRELEQALLA----------SAEpfpkVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQL 2167
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNvrnnkeyealQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEL 140
|
170 180
....*....|....*....|....*..
gi 568932674 2168 EQFREELENKNDEVQELLMQLEIQRKE 2194
Cdd:COG1579 141 EEKKAELDEELAELEAELEELEAEREE 167
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1863-2523 |
2.24e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1863 ESVIDGYSDEKTLFERQIQEKTDIIE----HLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpveQRPID 1938
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL----QNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1939 AAAGAARGAEFLQETEKLMKEKLEVQCQAEKvrGDLQkQVKALEIDVEEQVSRfiELEQEKNAELTDLRQQSQALEKQLE 2018
Cdd:pfam15921 153 ELEAAKCLKEDMLEDSNTQIEQLRKMMLSHE--GVLQ-EIRSILVDFEEASGK--KIYEHDSMSTMHFRSLGSAISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2019 KMR---KFLDEQAIDREHERDVFQQEIQ-KLEHQLKA-VPRI-QPVSEHQArEVEQLTNHLKEKTDRCSELLLSKEQLQR 2092
Cdd:pfam15921 228 ELDteiSYLKGRIFPVEDQLEALKSESQnKIELLLQQhQDRIeQLISEHEV-EITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2093 DIQERNE----EIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSlevQLQVERDatdrkqkeitnleeqle 2168
Cdd:pfam15921 307 QARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT---EARTERD----------------- 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2169 QFREELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDE------IEKLGFAMKESDSVSTRDQPMLFGKFAQLI 2242
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLHKREKELSL---EKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQ 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2243 QEKEIEIDRLN------EQFIKLQQQLKLTTD--NKVIEEQKEQIQDLETQiERLMSEREHEKKQREEEVEQLTGVVEKL 2314
Cdd:pfam15921 444 GQMERQMAAIQgkneslEKVSSLTAQLESTKEmlRKVVEELTAKKMTLESS-ERTVSDLTASLQEKERAIEATNAEITKL 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2315 Q-------QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQ-----------VMTHMNNVLKEINFK 2376
Cdd:pfam15921 523 RsrvdlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDR 602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2377 MDQITQSLCNLNKECASNEELPS----LPKESVHMTvhELGSDNLQpedaPAQDVTKPLEKQTSLTRLQKSPEASRTQEI 2452
Cdd:pfam15921 603 RLELQEFKILKDKKDAKIRELEArvsdLELEKVKLV--NAGSERLR----AVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568932674 2453 ESLASSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRS---LEKFAAALVSQV-----QMEAAQEYVPFHQE 2523
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghAMKVAMGMQKQItakrgQIDALQSKIQFLEE 755
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
674-734 |
2.29e-04 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 43.35 E-value: 2.29e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 674 KSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQL 734
Cdd:pfam02403 44 ELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELKELEAELDKLLLTI 104
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
3012-3332 |
2.45e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3012 CSMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA-FRSEVKEKTDEIH 3090
Cdd:pfam05483 164 CARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeYKKEINDKEKQVS 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3091 FLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQkqllnesQQKIESQKMLH 3170
Cdd:pfam05483 244 LLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-------QRSMSTQKALE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3171 D---------AQLSEEQGRNLG-LQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEE 3240
Cdd:pfam05483 317 EdlqiatktiCQLTEEKEAQMEeLNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEK--------NEDQLKIITMELQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3241 KHSRIVELLSETEKYKLDSLQTRQQMEKDrqvhqktlQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3320
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAED--------EKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
|
330
....*....|..
gi 568932674 3321 RLQGLMQEFQKQ 3332
Cdd:pfam05483 461 AIKTSEEHYLKE 472
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2971-3256 |
2.63e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2971 QKADRRSLLAEIEDLRAQINGGKMTLER-EQGTEKSSQELLDCSMQ----QKQSLEMQLELSSLRDRAAELQEQLSSEKM 3045
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3046 VVAELKSELAQAKLELGTTLKAQHKRLKELEAF-----RSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHH 3120
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3121 EgREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKS 3200
Cdd:TIGR02169 832 E-KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3201 TLDKERELYAQLQSR----------------EDGGQPPPALPSEDLLKELQK---------------------------- 3236
Cdd:TIGR02169 911 QIEKKRKRLSELKAKlealeeelseiedpkgEDEEIPEEELSLEDVQAELQRveeeiralepvnmlaiqeyeevlkrlde 990
|
330 340
....*....|....*....|....*.
gi 568932674 3237 ------QLEEKHSRIVELLSETEKYK 3256
Cdd:TIGR02169 991 lkekraKLEEERKAILERIEEYEKKK 1016
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
218-728 |
3.45e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 218 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKE-EDLQAQISFLQEKLRAFEMEKDRKIENlnAKEIQEKQALIDELN 296
Cdd:COG4717 38 TLLAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEELEEL--EEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 297 TRV--VEEEKKTVELKNKVTTADELLGGLH---EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLK 371
Cdd:COG4717 116 EELekLEKLLQLLPLYQELEALEAELAELPerlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 372 DSWLETSAVRRVEQETQRKLSHLQAELDemygkqivqmkqelinQHMSQIEELKSQHKREMENTLKSDTNAAIskeqvnL 451
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELE----------------ELEEELEQLENELEAAALEERLKEARLLL------L 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 452 MNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 531
Cdd:COG4717 254 IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 532 LKAEIVAASESRKE--LELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSKLKEDLEV 607
Cdd:COG4717 334 LSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeYQELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 608 EHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMEsmqcETDNLITQQNQLILENSKLRDLQEclvnskseemnlqINELQK 687
Cdd:COG4717 414 LLGELEELLEALDEEELEEELEELEEELEELEE----ELEELREELAELEAELEQLEEDGE-------------LAELLQ 476
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 568932674 688 EIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQ 728
Cdd:COG4717 477 ELEELKAELRE---LAEEWAALKLALELLEEAREEYREERL 514
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
284-542 |
3.60e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 284 EIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRtve 363
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 364 ELQKRNLKDSWLE--------TSAVRRVEqetqrklshlqaeldemYGKQIVQMKQELINQHMSQIEELKSQHKREMENT 435
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 436 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 515
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
250 260
....*....|....*....|....*..
gi 568932674 516 ENRLSEARKSLSTVEDLKAEIVAASES 542
Cdd:COG3883 237 AAAAAAAASAAGAGAAGAAGAAAGSAG 263
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
118-616 |
3.65e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 118 AQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLtanlqqarREKDDTMVEFL 197
Cdd:PRK02224 232 ARETRDEADEVLEEHEERREELETLEAEIEDLRETI-AETEREREELAEEVRDLRERLEEL--------EEERDDLLAEA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 198 ELTEQSQK-LQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlQDYQKKEEDLQAQISFLQEKLRAFEmekdrk 276
Cdd:PRK02224 303 GLDDADAEaVEARREELEDRDEELRDRLEECRVAAQAHNEEA-------ESLREDADDLEERAEELREEAAELE------ 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 277 ienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGL---HEQLTQRNQEIQSLKLELGNSQQNERKCSE 353
Cdd:PRK02224 370 ------SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAedfLEELREERDELREREAELEATLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 354 EIKELMrtveELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEmygkqiVQMKQELINQHMSQIEELKSQHKReme 433
Cdd:PRK02224 444 EAEALL----EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED------LEEEVEEVEERLERAEDLVEAEDR--- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 434 nTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFL----------RE 503
Cdd:PRK02224 511 -IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELnsklaelkerIE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 504 QVQKARQTIAEQEN------RLSEARKSLSTVEDLKAEIVAA-SESRKELELKHEAE---------------ITNYKIKL 561
Cdd:PRK02224 590 SLERIRTLLAAIADaedeieRLREKREALAELNDERRERLAEkRERKRELEAEFDEArieearedkeraeeyLEQVEEKL 669
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 562 EMLEKEKNAVLDR--MAESQEAELERLRTQL------------LFSHEEELSKLKEDLEVEHRI-NIEKL 616
Cdd:PRK02224 670 DELREERDDLQAEigAVENELEELEELRERRealenrvealeaLYDEAEELESMYGDLRAELRQrNVETL 739
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1786-2326 |
4.24e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1786 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESV 1865
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1866 IDGYSDEKTLFERqiqektdiiehleqevlcmnnRLQELESDQRRVEEerQLLCRQREAMRAEAGPVEQRPIdaaagaar 1945
Cdd:TIGR00618 482 HLQETRKKAVVLA---------------------RLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRM-------- 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1946 gaeflqetEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEqvsrfielEQEKNAELTDLRQQSQALEKQLEKMRKFLD 2025
Cdd:TIGR00618 531 --------QRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--------MQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2026 eqaidreherdvfqqeiqklehqlkavpRIQPVSEHQAREVEQLTNHLKEktdrcselLLSKEQLQRDIQERNEEIEKLE 2105
Cdd:TIGR00618 595 ----------------------------RLQDLTEKLSEAEDMLACEQHA--------LLRKLQPEQDLQDVRLHLQQCS 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2106 CRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL 2185
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYD 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2186 MQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQ------EKEIEIDRLNEQFIKL 2259
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQtgaelsHLAAEIQFFNRLREED 797
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 2260 QQQLKlTTDNKVIEEQKEQIQDLETQIERLMSEREhEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2326
Cdd:TIGR00618 798 THLLK-TLEAEIGQEIPSDEDILNLQCETLVQEEE-QFLSRLEEKSATLGEITHQLLKYEECSKQLA 862
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1987-2357 |
4.27e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1987 EQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAVPRIQpvsehQAREV 2066
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEA-----------ELEELREELEKLEKLLQLLPLYQ-----ELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2067 EQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQallasaepfpkvedqkrsgaveadpELSLEVQL 2146
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLE-------------------------QLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2147 QVERDATDRK--QKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKEsttrlQELQQENRLFKDEIEKLGFAMKESD 2224
Cdd:COG4717 193 ELQDLAEELEelQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE-----ERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2225 SVSTRDQ-PMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQ--------DLETQIERLMSEREH 2295
Cdd:COG4717 268 LLSLILTiAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELlaalglppDLSPEELLELLDRIE 347
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 2296 EKKQREEEVEQLTgvvEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKV------TAEKLVLEQQVE 2357
Cdd:COG4717 348 ELQELLREAEELE---EELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeyqelKEELEELEEQLE 412
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
405-622 |
4.29e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 405 QIVQMKQELINQhmsqieELKSQHKreMENTLKSDTNAAISKEQ------VNLMN---AAINELNVRLQETHAQKEELKG 475
Cdd:PHA02562 184 QTLDMKIDHIQQ------QIKTYNK--NIEEQRKKNGENIARKQnkydelVEEAKtikAEIEELTDELLNLVMDIEDPSA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 476 ELGVVLGEKSALQSQSNDLLEEVRFLRE--QVQKARQTIAEQENRLSEARKSLSTV----EDLKAEIVAASE-------- 541
Cdd:PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMYEKggVCPTCTQQISEGPDRITKIKDKLKELqhslEKLDTAIDELEEimdefneq 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 542 SRKELELKHEAEITNYKIKLEmlekeknavlDRMAESQEAELERLRTQLLfSHEEELSKLKEDLE--VEHRINIEKLKDN 619
Cdd:PHA02562 336 SKKLLELKNKISTNKQSLITL----------VDKAKKVKAAIEELQAEFV-DNAEELAKLQDELDkiVKTKSELVKEKYH 404
|
...
gi 568932674 620 LGI 622
Cdd:PHA02562 405 RGI 407
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
262-844 |
4.49e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 262 LQEKLRAFEMEKDRKIENLN-AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTT-ADELLGGLH--EQLTQRNQEIQSL 337
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKyADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENyIDEIKAQINdlEDVADKAISNDDP 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 338 KlELGNSQQN-------ERKCSEEIKELMRTVEELQK--------RNLKDSW---LETSAVRRVEQETQRKLSHLQAEld 399
Cdd:TIGR01612 1169 E-EIEKKIENivtkidkKKNIYDEIKKLLNEIAEIEKdktsleevKGINLSYgknLGKLFLEKIDEEKKKSEHMIKAM-- 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 400 EMYGKQIVQMKQEliNQHMSQIEELKSQHKREME--NTLKSDTNAAISKEQVNLMNAA-INELNVRLQETHAQKE---EL 473
Cdd:TIGR01612 1246 EAYIEDLDEIKEK--SPEIENEMGIEMDIKAEMEtfNISHDDDKDHHIISKKHDENISdIREKSLKIIEDFSEESdinDI 1323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 474 KGELGVVLGEKSALQSQSNDLLEEVRFLRE-----QVQKARQTIAEQENRLSEARKS----LSTVEDLKAEIVAASeSRK 544
Cdd:TIGR01612 1324 KKELQKNLLDAQKHNSDINLYLNEIANIYNilklnKIKKIIDEVKEYTKEIEENNKNikdeLDKSEKLIKKIKDDI-NLE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 545 ELELKHEAEITNYKIK--LEMLEKEKNAVLDRMAES----QEAELERLRTQLLFSHEEE--------LSKLKEDLEVEHR 610
Cdd:TIGR01612 1403 ECKSKIESTLDDKDIDecIKKIKELKNHILSEESNIdtyfKNADENNENVLLLFKNIEMadnksqhiLKIKKDNATNDHD 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 611 INIEKLKDNL--GIHYKQQID--GLQNEMNRKM-ESMQCETDNLITQQNQLILEN--SKLRDLQECLVNSKSEEMNLQIN 683
Cdd:TIGR01612 1483 FNINELKEHIdkSKGCKDEADknAKAIEKNKELfEQYKKDVTELLNKYSALAIKNkfAKTKKDSEIIIKEIKDAHKKFIL 1562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 684 ELQKEIEILKQEEKEKGTLEQEVQE----------LQLKTEQLEKQLKeKEDDLQEKCaqldaeNNILKEEKRVlEDKLK 753
Cdd:TIGR01612 1563 EAEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidIQLSLENFENKFL-KISDIKKKI------NDCLKETESI-EKKIS 1634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 754 MYSPSEQE-ERSIAVDPSTSKSAdsrWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCL 832
Cdd:TIGR01612 1635 SFSIDSQDtELKENGDNLNSLQE---FLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIA 1711
|
650
....*....|..
gi 568932674 833 LKirDDLEATQT 844
Cdd:TIGR01612 1712 NK--EEIESIKE 1721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2171-2516 |
4.77e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2171 REELENKNDEVQELLMQLEIQRKESTTRLQELQQE-----------NRLFKDEIEKLGFAMKESDSVSTRDQpmlfgkfa 2239
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLEPLERQaekaeryrelkEELKELEAELLLLKLRELEAELEELE-------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2240 QLIQEKEIEIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLtgvvEKL 2314
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELeelrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL----EEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2315 QQEVVSTEQQREGARTlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASN 2394
Cdd:COG1196 322 EEELAELEEELEELEE----------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2395 EElpslpkesvhmTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCREQTE 2474
Cdd:COG1196 392 LR-----------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568932674 2475 TIQ--EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQE 2516
Cdd:COG1196 461 LLEllAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2163-2374 |
4.92e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2163 LEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLF----------------KDEIEKLGFAMKESDSV 2226
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeaklllqqlselESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2227 STRDQPMLFGKFAQLIQEKEI-EIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERlmsEREHEKKQR 2300
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpVIQQLRAQLAELEAELaelsaRYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932674 2301 EEEVEQLTGVVEKLQQEVvstEQQREGARTLPEDEesfkhqldkvtAEKLVLEQQVETTNQVMTHMNNVLKEIN 2374
Cdd:COG3206 319 EAELEALQAREASLQAQL---AQLEARLAELPELE-----------AELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
317-578 |
5.05e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 317 DELLGGLHE----QLTQRNQEIQSLKLElgnsqqNERKCSEEIKELMRTVEE-LQKRNLKDSWLETSAVRRVE---QETQ 388
Cdd:PRK05771 19 DEVLEALHElgvvHIEDLKEELSNERLR------KLRSLLTKLSEALDKLRSyLPKLNPLREEKKKVSVKSLEeliKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 389 RKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKS-----QHKREMENTLKSDtnAAISKEQVNLMNAAINELNV 461
Cdd:PRK05771 93 EELEKIEKEIKEL-EEEISELENEIkeLEQEIERLEPWGNfdldlSLLLGFKYVSVFV--GTVPEDKLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 462 RLqethaqKEELKGELGVVL-GEKSALQSQSnDLLEEVRFLREQVQ---KARQTIAEQENRLSEarkslstvedLKAEIV 537
Cdd:PRK05771 170 EY------ISTDKGYVYVVVvVLKELSDEVE-EELKKLGFERLELEeegTPSELIREIKEELEE----------IEKERE 232
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 568932674 538 AASESRKELELKHEAEITNYKIKLEMlEKEKNAVLDRMAES 578
Cdd:PRK05771 233 SLLEELKELAKKYLEELLALYEYLEI-ELERAEALSKFLKT 272
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
2151-2380 |
5.40e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 46.00 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2151 DATDRKQKEITNLEEQLEQFREELENKN--------DEVQELLMQLEIQRKESTTRLQELQQEnrlFKDEIEKLGFAMKE 2222
Cdd:pfam06160 146 PAIDELEKQLAEIEEEFSQFEELTESGDylearevlEKLEEETDALEELMEDIPPLYEELKTE---LPDQLEELKEGYRE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2223 sdsvstrdqpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTdnkvIEEQKEQIQDLETQIERLMSEREHEKKQREE 2302
Cdd:pfam06160 223 ----------MEEEGYALEHLNVDKEIQQLEEQLEENLALLENLE----LDEAEEALEEIEERIDQLYDLLEKEVDAKKY 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2303 EVEQLTGVVEKLQQ-EVVSTEQQREGAR-----TLPEDE----ESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKE 2372
Cdd:pfam06160 289 VEKNLPEIEDYLEHaEEQNKELKEELERvqqsyTLNENElervRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEE 368
|
....*...
gi 568932674 2373 INFKMDQI 2380
Cdd:pfam06160 369 ILEQLEEI 376
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
129-560 |
5.44e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 129 EKELAEKQHDIEELTQELEEMRAsfgtEGLKQLQEFEAAIKQRdgiitqltaNLQQARREKDDtmvEFLELTEQSQKLQI 208
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKA----DELKKAEELKKAEEKK---------KAEEAKKAEED---KNMALRKAEEAKKA 1589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 209 QFQHLQANETLQNSTLSRTATDLLQAKRQiftqqQQLQDYQKKEEDLQAQIsflqEKLRAFEMEKDRKIENLNaKEIQEK 288
Cdd:PTZ00121 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEA-----KIKAEELKKAEEEKKKV----EQLKKKEAEEKKKAEELK-KAEEEN 1659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 289 QALIDELNTRVVEEEKKTVELKNkvttADELLGGLHEQLTQRNQEIQSLKlELGNSQQNERKCSEEIK----ELMRTVEE 364
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKK----AEEDEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKkaeeENKIKAEE 1734
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 365 LQKRNLKDSWLETSAvrRVEQETQRKLSHLQAElDEMYGKQIVQMKQELINQhmsQIEELKSQHKREMENTLK-SDTNAA 443
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEA--KKDEEEKKKIAHLKKE-EEKKAEEIRKEKEAVIEE---ELDEEDEKRRMEVDKKIKdIFDNFA 1808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 444 ISKEQVNLMNAAINElnvrlqethaQKEELKGELGVVLgeksalqSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEAR 523
Cdd:PTZ00121 1809 NIIEGGKEGNLVIND----------SKEMEDSAIKEVA-------DSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFN 1871
|
410 420 430
....*....|....*....|....*....|....*..
gi 568932674 524 KSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIK 560
Cdd:PTZ00121 1872 KEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
453-864 |
5.56e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 453 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALqsqsnDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDL 532
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 533 KAEIVAASESRKELE-----------LKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEaELERLRTQLlfsheEELSKL 601
Cdd:COG4717 162 EEELEELEAELAELQeeleelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEEL-----EQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 602 KEDLEVEHRINIEK--------------LKDNLGIHYKQQIDGLQ----------NEMNRKMESMQCETDNLITQQNQLI 657
Cdd:COG4717 236 LEAAALEERLKEARlllliaaallallgLGGSLLSLILTIAGVLFlvlgllallfLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 658 LENSKLRDLQECLVNSKSEEmNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQ---LEKQLKEKEDDLQEKCAQL 734
Cdd:COG4717 316 LEEEELEELLAALGLPPDLS-PEELLELLDRIEELQELLREAEELEEELQLEELEQEIaalLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 735 DAENNiLKEEKRVLEDKLKMYSPSEQEERSiAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFA 814
Cdd:COG4717 395 EEYQE-LKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 815 EKNFEVNY-----QELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSK 864
Cdd:COG4717 473 ELLQELEElkaelRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSR 527
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
676-970 |
5.72e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 676 EEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDaENNILKEEKRVLEDKLKM- 754
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLED-MKNRYESEIKTAESDLSMe 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 755 ------YSPSEQEERSIAVDPSTSKSADSRwqkEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAE--KNFEVNYQELQ 826
Cdd:PRK01156 269 leknnyYKELEERHMKIINDPVYKNRNYIN---DYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSvlQKDYNDYIKKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 827 REYTCLLKIRDDLEATQTKqaleYESKLRALEEelLSKRGNPAAPKGKSSGIFPSETLEIGEVvekDTTELMEKLEVTKR 906
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMD----YNSYLKSIES--LKKKIEEYSKNIERMSAFISEILKIQEI---DPDAIKKELNEINV 416
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568932674 907 EKLELSEKVSglseqlkqthctinSLSAEVRALKQEKEqlllrcgelELLANPSGTENAAVCPV 970
Cdd:PRK01156 417 KLQDISSKVS--------------SLNQRIRALRENLD---------ELSRNMEMLNGQSVCPV 457
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
119-810 |
6.44e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 119 QSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQ---QARREKDDTMVE 195
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEkvfQGTDEQLNDLYH 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 196 FLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR 275
Cdd:TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 276 KIENLNA----KEIQEKQA-----LIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQ 346
Cdd:TIGR00606 389 ERQIKNFhtlvIERQEDEAktaaqLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 347 NERKCSEEIKELMRTVEELQK----RNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMS--- 419
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKaeknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkd 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 420 -QIEELKSQHKREMENTLK--------SDTNAAISKEqVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQ 490
Cdd:TIGR00606 549 eQIRKIKSRHSDELTSLLGyfpnkkqlEDWLHSKSKE-INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDK 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 491 ------SNDLLEEVRFLREQVQKAR--------------QTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKH 550
Cdd:TIGR00606 628 lfdvcgSQDEESDLERLKEEIEKSSkqramlagatavysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLA 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 551 EAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLrtqllfshEEELSKLKEDLEVEHRiNIEKLKDNLGIHYKQqidg 630
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEMLG-LAPGRQSIIDLK--------EKEIPELRNKLQKVNR-DIQRLKNDIEEQETL---- 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 631 LQNEMNRKMESMQCETDNLITQQNQLILENSKlRDLQECLVNSKSEEMNLQINELQKEIEilkQEEKEKGTLEQEVQELQ 710
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQVNQEKQ---EKQHELDTVVSKIELNR 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 711 LKTEqlekqlkekedDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKET 790
Cdd:TIGR00606 850 KLIQ-----------DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918
|
730 740
....*....|....*....|
gi 568932674 791 EDLQQQclylNEEIEKQRNT 810
Cdd:TIGR00606 919 EKDQQE----KEELISSKET 934
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1853-2185 |
6.67e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAgpv 1932
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAER--- 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1933 EQRPIDAAAGAARGAEFLQETEKLMKEklEVQCQAEKVRGDLQKQVKALEIDVEEQVSRfieLEQEKNAELTDLRQQSQA 2012
Cdd:pfam12128 677 KDSANERLNSLEAQLKQLDKKHQAWLE--EQKEQKREARTEKQAYWQVVEGALDAQLAL---LKAAIAARRSGAKAELKA 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2013 LEKQLEKMRKFL--DEQAI-DREHERDVFQQEIQKLEHQLKAV---------------PRIQPVSEHQAREVEQLTNHLK 2074
Cdd:pfam12128 752 LETWYKRDLASLgvDPDVIaKLKREIRTLERKIERIAVRRQEVlryfdwyqetwlqrrPRLATQLSNIERAISELQQQLA 831
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2075 EKTDRcSELLLSKEQLQRDIQER-----NEEIEKLECRVREL---------EQALLASAEPFPKVEDQKRSGAveadpEL 2140
Cdd:pfam12128 832 RLIAD-TKLRRAKLEMERKASEKqqvrlSENLRGLRCEMSKLatlkedansEQAQGSIGERLAQLEDLKLKRD-----YL 905
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568932674 2141 SLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL 2185
Cdd:pfam12128 906 SESVKKYVEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLL 950
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1897-2250 |
7.35e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 7.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1897 MNNRLQELESDQRRVEEERQLLCRQREAmrAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQcQAEKVRGDLQK 1976
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKK--ALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL-RDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1977 QVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAvpriq 2056
Cdd:pfam02463 258 QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK----- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2057 pvsehQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQK----RSG 2132
Cdd:pfam02463 333 -----EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKseeeKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2133 AVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDE 2212
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
330 340 350
....*....|....*....|....*....|....*...
gi 568932674 2213 IEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEID 2250
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRII 525
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1853-2390 |
7.56e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 7.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1853 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESD----QRRVEEER---QLLCRQREAM 1925
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEIlhelESRLEEEEersQQLQNEKKKM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1926 RAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIElEQEKNAELTD 2005
Cdd:pfam01576 102 QQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAE-EEEKAKSLSK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2006 LRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQlkavpriqpVSEHQAReVEQLTNHLKEKTDRCSELLL 2085
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ---------IAELQAQ-IAELRAQLAKKEEELQAALA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2086 SKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEE 2165
Cdd:pfam01576 251 RLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE---ALKTELEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2166 QLEQFREELEnknDEVQELLMQLEIQRKESTTRLQELQQE---NRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLI 2242
Cdd:pfam01576 328 EVTELKKALE---EETRSHEAQLQEMRQKHTQALEELTEQleqAKRNKANLEKAKQALESENAELQAELRTL----QQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2243 QEKEIEIDRLNEQFIKLqqQLKLTTDNKVIEEQKEQIQDLETQIER---LMSEREHEKKQREEEV----EQLTGVVEKLQ 2315
Cdd:pfam01576 401 QDSEHKRKKLEGQLQEL--QARLSESERQRAELAEKLSKLQSELESvssLLNEAEGKNIKLSKDVssleSQLQDTQELLQ 478
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 2316 QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2390
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1995-2216 |
8.53e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1995 LEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQklehqlkavprIQPVSEHQAREVEQLTnhlk 2074
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEA----EAALEEFRQKNG-----------LVDLSEEAKLLLQQLS---- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2075 ektdrcselllskeQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpELSLEVQLQVERDATD 2154
Cdd:COG3206 223 --------------ELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYT 287
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568932674 2155 RKQKEITNLEEQLEQFREELENkndEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2216
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-946 |
1.02e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 634 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKT 713
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 714 EQLEKQLKEKEDDLQEKCAQLDAENNilKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDL 793
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 794 QQqclyLNEEIEKQRntfafaeknfeVNYQELQREYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRgnpaapkg 873
Cdd:TIGR02169 339 EE----LEREIEEER-----------KRRDKLTEEYAELKEELEDLRA----ELEEVDKEFAETRDELKDYR-------- 391
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932674 874 kssgifpsetleigevvekdttelmEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 946
Cdd:TIGR02169 392 -------------------------EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1902-2289 |
1.29e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1902 QELESDQRRVEEERQLLcrqrEAMRAEAGPVEQRPIDAAAGAARGAEFLQetekLMKEKLEVQCQAEKVRGDLQKqvkaL 1981
Cdd:PRK04863 293 RELYTSRRQLAAEQYRL----VEMARELAELNEAESDLEQDYQAASDHLN----LVQTALRQQEKIERYQADLEE----L 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1982 EIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEIQKLEhQLKAVPRIQPV 2058
Cdd:PRK04863 361 EERLEEQN----EVVEEADEQQEENEARAEAAEEEVDELKSQLAdyQQALDVQQTRAIqYQQAVQALE-RAKQLCGLPDL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2059 SEHQARE-VEQLTNHLKEKTDRcselLLSKEQLQRDIQERNEEIEKLECRVREL------EQALLASAEPFPKVEDQK-- 2129
Cdd:PRK04863 436 TADNAEDwLEEFQAKEQEATEE----LLSLEQKLSVAQAAHSQFEQAYQLVRKIagevsrSEAWDVARELLRRLREQRhl 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2130 --RSGAVEA---DPELSLEVQLQVERDATDRKQKEITNLE---------EQLEQFREELENKNDEVQELLMQLEIQRKES 2195
Cdd:PRK04863 512 aeQLQQLRMrlsELEQRLRQQQRAERLLAEFCKRLGKNLDdedeleqlqEELEARLESLSESVSEARERRMALRQQLEQL 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2196 TTRLQELQQ---ENRLFKDEIEKLGFAMKESDSVSTR-DQPMLfgkfAQLIQEKEIEIDRlneqfiklqqqlklttdnkv 2271
Cdd:PRK04863 592 QARIQRLAArapAWLAAQDALARLREQSGEEFEDSQDvTEYMQ----QLLERERELTVER-------------------- 647
|
410
....*....|....*...
gi 568932674 2272 iEEQKEQIQDLETQIERL 2289
Cdd:PRK04863 648 -DELAARKQALDEEIERL 664
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
128-704 |
1.38e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 128 VEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 207
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSH-SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 208 IQfqhLQANETLQNST--LSRTATDLLQAKRQ----IFTQQQQLQDYQKKEEDLQAQISFLQEKLR-AFEMEKDRkienl 280
Cdd:PRK01156 267 ME---LEKNNYYKELEerHMKIINDPVYKNRNyindYFKYKNDIENKKQILSNIDAEINKYHAIIKkLSVLQKDY----- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 281 naKEIQEKQALIDELNTRVVEeekktvelknkvttadelLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMR 360
Cdd:PRK01156 339 --NDYIKKKSRYDDLNNQILE------------------LEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 361 ----TVEELQKRnlkdswleTSAVRRVEQETQRKLSHLQAELDEMYGKQI-VQMKQELINQHM------SQIEELKSQHK 429
Cdd:PRK01156 399 iqeiDPDAIKKE--------LNEINVKLQDISSKVSSLNQRIRALRENLDeLSRNMEMLNGQSvcpvcgTTLGEEKSNHI 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 430 REMENtlksdtnaaiskEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR 509
Cdd:PRK01156 471 INHYN------------EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKI 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 510 QTIAEQENRLSEARKSLST--VEDLKAEivaASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAE--SQEAELER 585
Cdd:PRK01156 539 NELKDKHDKYEEIKNRYKSlkLEDLDSK---RTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEieIGFPDDKS 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 586 LRTQLLFSHEEELSKL--KEDLEVEHRINIEKLKDNLGiHYKQQIDGL------QNEMNRKMESMQCETDNLITQQNQLI 657
Cdd:PRK01156 616 YIDKSIREIENEANNLnnKYNEIQENKILIEKLRGKID-NYKKQIAEIdsiipdLKEITSRINDIEDNLKKSRKALDDAK 694
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 568932674 658 LENSKLRDLQECLVnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQ 704
Cdd:PRK01156 695 ANRARLESTIEILR-TRINELSDRINDINETLESMKKIKKAIGDLKR 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2245-2597 |
1.38e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2245 KEIEIDRLNEQFIKLQQ-QLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQ 2323
Cdd:COG1196 220 EELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2324 QREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELpslpKE 2403
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2404 SVHMTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSpEASRTQEIESLASSVGAKDVELTQCREQTETIQE---QA 2480
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-LERLEEELEELEEALAELEEEEEEEEEALEEAAEeeaEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2481 QSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQEYVPFHQEKQPVSSAPGSTDIQNANGLTGAsteSLIPTVTLRLAE 2560
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL---RGLAGAVAVLIG 531
|
330 340 350
....*....|....*....|....*....|....*..
gi 568932674 2561 VESRVAEVHSGTMSEKLVGIVGGNAsETEKRVIELQK 2597
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDD-EVAAAAIEYLK 567
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2084-2379 |
1.46e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2084 LLSKEQLQRDIQERN--EEIEKLEC-RVRELEQALLASAEPFPKVEDQKRSGAVEADPELSleVQLQVERDATDRkqkei 2160
Cdd:pfam17380 274 LLHIVQHQKAVSERQqqEKFEKMEQeRLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAA--IYAEQERMAMER----- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2161 tnlEEQLEQFR-EELENKNDEVQELLMQLEIQRKESTTRLQ-ELQQENRLFKDEIEklgfamkesdsvSTRDQPMLFGKF 2238
Cdd:pfam17380 347 ---ERELERIRqEERKRELERIRQEEIAMEISRMRELERLQmERQQKNERVRQELE------------AARKVKILEEER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2239 AQLIQEKEIEIDRLneqfiklqqqlklttdnkvieeQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEv 2318
Cdd:pfam17380 412 QRKIQQQKVEMEQI----------------------RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ- 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568932674 2319 vstEQQREGARTLPEDEESFKHQLDKVtaEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQ 2379
Cdd:pfam17380 469 ---EEERKRKKLELEKEKRDRKRAEEQ--RRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
273-709 |
1.49e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 273 KDRKIENLNAKE---IQEKQALIDELNTRVVEEEKKTVELKNKVTTADEllggLHEQLTQRNQEIQSLKLELGNSQQNER 349
Cdd:COG5022 848 IQKFGRSLKAKKrfsLLKKETIYLQSAQRVELAERQLQELKIDVKSISS----LKLVNLELESEIIELKKSLSSDLIENL 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 350 KC-SEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYgkqivQMKQELINQHMSQIEELKsQH 428
Cdd:COG5022 924 EFkTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLL-----KKSTILVREGNKANSELK-NF 997
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 429 KREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGvvlgeksaLQSQSNDLLEEVRFLREQVqKA 508
Cdd:COG5022 998 KKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKP--------LQKLKGLLLLENNQLQARY-KA 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 509 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNyKIKLEMLekeKNAVLDRMAES---------- 578
Cdd:COG5022 1069 LKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ-FIVAQMI---KLNLLQEISKFlsqlvntlep 1144
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 579 -----QEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYKQQIDGLQNEMNrKMESMQCETDNL---- 649
Cdd:COG5022 1145 vfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELI-ALFSKIFSGWPRgdkl 1223
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 650 ---------ITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILK-QEEKEKGTLEQEVQEL 709
Cdd:COG5022 1224 kklisegwvPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKlEEEVLPATINSLLQYI 1293
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
3002-3337 |
1.58e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3002 TEKSSQelldcSMQQKQSLEMQLEL--SSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRL----KEL 3075
Cdd:pfam15921 284 TEKASS-----ARSQANSIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3076 EAFRSEVKEKTDEIHFLSDTLAR--EQKNSLELQWALEKEK-ARSGHHEGREKEELEDLKFSLEDqkrRNTQLNLLLEQQ 3152
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQnKRLWDRDTGNSITIDHLRRELDD---RNMEVQRLEALL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3153 KQLLNESQQKIESqkmlhdaQLSEEQGRNLGLQAlLESEQVRIQEMKSTLDK-ERELYAQLQSREDGGQPPPALPSEdlL 3231
Cdd:pfam15921 436 KAMKSECQGQMER-------QMAAIQGKNESLEK-VSSLTAQLESTKEMLRKvVEELTAKKMTLESSERTVSDLTAS--L 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3232 KELQKQLEEKHSRIVELLSETEkYKLDSLQTRqqmeKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQEKRQQ 3311
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVD-LKLQELQHL----KNEGDHLRNVQTECEAL---KLQMAEKDKVIEILRQQIENMTQL 577
|
330 340
....*....|....*....|....*.
gi 568932674 3312 VYkldlEGKRLQGLMQeFQKQELEPE 3337
Cdd:pfam15921 578 VG----QHGRTAGAMQ-VEKAQLEKE 598
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
2001-2300 |
1.68e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.90 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2001 AELTDLRQQSQALEKQLEKMRKFLDEQAID--------REHERDVFQ--QEIQKLEHQLKAVPRIQPVSEHQAREVEQLT 2070
Cdd:pfam19220 83 GELEELVARLAKLEAALREAEAAKEELRIElrdktaqaEALERQLAAetEQNRALEEENKALREEAQAAEKALQRAEGEL 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2071 NHLKEKTDRCSElllSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQ---KRSGAVEADPELSLEV-QL 2146
Cdd:pfam19220 163 ATARERLALLEQ---ENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQlaaEQAERERAEAQLEEAVeAH 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2147 QVERDATDRKQKEITN----LEEQLEQFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENrlfKDEIEKLGFA 2219
Cdd:pfam19220 240 RAERASLRMKLEALTAraaaTEQLLAEARNQLRDRDEAIRAAerrLKEASIERDTLERRLAGLEADL---ERRTQQFQEM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2220 MKESDSVSTRDqpmlfGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDnkvieEQKEQIQDLETQIERLMSEREHEKKQ 2299
Cdd:pfam19220 317 QRARAELEERA-----EMLTKALAAKDAALERAEERIASLSDRIAELTK-----RFEVERAALEQANRRLKEELQRERAE 386
|
.
gi 568932674 2300 R 2300
Cdd:pfam19220 387 R 387
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1791-2218 |
1.71e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1791 RLQAAVEKLLEAISETNTQLEHAKVTQTELMREsfRQKQEATEslhcleELRERLQEESRAREQLAEELNKAESVIDGYS 1870
Cdd:pfam12128 434 EFNEEEYRLKSRLGELKLRLNQATATPELLLQL--ENFDERIE------RAREEQEAANAEVERLQSELRQARKRRDQAS 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1871 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEE-------RQLLCRQREAMRAEAGPVEQRP------I 1937
Cdd:pfam12128 506 EALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvisPELLHRTDLDPEVWDGSVGGELnlygvkL 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1938 DAAAGAARGAEFLQETEKLMKEKLEVQCQAEKVR-GDLQKQVKALEIDVEEQVSrfiELEQEKNA-ELTDLRQQSQALEK 2015
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKqAAAEEQLVQANGELEKASR---EETFARTAlKNARLDLRRLFDEK 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2016 QLEKMRKfldEQAIDREheRDVFQQEIQKLEHQLKAVPR-IQPVSEHQAREVEQLTNH---------------------- 2072
Cdd:pfam12128 663 QSEKDKK---NKALAER--KDSANERLNSLEAQLKQLDKkHQAWLEEQKEQKREARTEkqaywqvvegaldaqlallkaa 737
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2073 -LKEKTDRCSELLLSKEQLQRDIQERN---EEIEKLECRVRELEQallasaepfpKVEDQKRSGAVEADPELSLEVQLQV 2148
Cdd:pfam12128 738 iAARRSGAKAELKALETWYKRDLASLGvdpDVIAKLKREIRTLER----------KIERIAVRRQEVLRYFDWYQETWLQ 807
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2149 ERDatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGF 2218
Cdd:pfam12128 808 RRP---RLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1966-2204 |
1.76e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1966 QAEKVrGDLQKQVKALEIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 2042
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2043 QKLE--HQLKAVPRIQP------VSEHQAREvEQLTNHLKEKTDRCSELLLSKEQLQRDIQ---------ERNEEIEK-- 2103
Cdd:COG3096 420 QALEkaRALCGLPDLTPenaedyLAAFRAKE-QQATEEVLELEQKLSVADAARRQFEKAYElvckiagevERSQAWQTar 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2104 -LECRVRELeQALLASAEPFpkvedqkrsGAVEADPELSLEVQLQVERDATDRKQK---------EITNLEEQLEQFREE 2173
Cdd:COG3096 499 eLLRRYRSQ-QALAQRLQQL---------RAQLAELEQRLRQQQNAERLLEEFCQRigqqldaaeELEELLAELEAQLEE 568
|
250 260 270
....*....|....*....|....*....|.
gi 568932674 2174 LENKNDEVQELLMQLEIQRKESTTRLQELQQ 2204
Cdd:COG3096 569 LEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
483-710 |
1.96e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 483 EKSALQS---QSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLstvEDLKAEivAASESRKELElkheaeitnyKI 559
Cdd:PRK11281 57 EDKLVQQdleQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAEL---EALKDD--NDEETRETLS----------TL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 560 KLEMLEKEKNAVLDRMAESQEA------ELERLRTQLlfshEEELSKLKEDLEvehRIN-IEKLKDNLGIHYKQQIDGLQ 632
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQP----ERAQAALYANSQ---RLQqIRNLLKGGKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 633 NEMNRKMESMqcetdNLITQQNQLILE-NSKLRDLqeclVNSKSEEMNLQINELQKEIEILkQE---EKEKGTLEQEVQE 708
Cdd:PRK11281 195 VLLQAEQALL-----NAQNDLQRKSLEgNTQLQDL----LQKQRDYLTARIQRLEHQLQLL-QEainSKRLTLSEKTVQE 264
|
..
gi 568932674 709 LQ 710
Cdd:PRK11281 265 AQ 266
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2978-3141 |
2.16e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2978 LLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQ---LSSEKMVVAELKSEL 3054
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAElerLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3055 AQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTL-AREQKNSLELQWALEKEKARSGhHEGREKEELEDLKF 3133
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLEERFAAAL-GDAVERELRENLEE 773
|
....*...
gi 568932674 3134 SLEDQKRR 3141
Cdd:COG4913 774 RIDALRAR 781
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
458-606 |
2.16e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 458 ELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTV------ED 531
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnnkeyEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 532 LKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEEELSKLKEDLE 606
Cdd:COG1579 94 LQKEIESLKRRISDL----EDEILELMERIEELEEELAELEAELAE-LEAELEEKKAEL----DEELAELEAELE 159
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
128-795 |
2.31e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 128 VEKELAEKQHDIEELTQELEEMRASFGTEGLkQLQEFEAAIKQRDGIITQLTANLQQARREKDD----TMVEFLELTEQS 203
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQL-QADRHQEHIRARDSLIQSLATRLELDGFERGPfserQIKNFHTLVIER 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 204 QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIF--TQQQQLQDYQKKEEDLQAQISFLQ-------------EKLRA 268
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLgrTIELKKEILEKKQEELKFVIKELQqlegssdrileldQELRK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 269 FE-----MEKDRKIENLNAKEIQEKQALIDELNTRVVEEEK------------KTVELKNKVTTADEllgGLHEQLTQRN 331
Cdd:TIGR00606 483 AErelskAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEmeqlnhhtttrtQMEMLTKDKMDKDE---QIRKIKSRHS 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 332 QEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSA--VRRVEQETQRKLSHLQAELDEMYGKQIVQM 409
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKnhINNELESKEEQLSSYEDKLFDVCGSQDEES 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 410 KQELINQHMSQIEELKSQ-------HKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQ-----------ETHAQKE 471
Cdd:TIGR00606 640 DLERLKEEIEKSSKQRAMlagatavYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQsklrlapdklkSTESELK 719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 472 ELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTvedlkaeIVAASESRKELelkhE 551
Cdd:TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-------IMPEEESAKVC----L 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 552 AEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQllfsheeeLSKLKEDLEVEHRINIEKLKDN--LGIHYKQQID 629
Cdd:TIGR00606 789 TDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ--------VNQEKQEKQHELDTVVSKIELNrkLIQDQQEQIQ 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 630 GLQNEMNR-KMESMQCETDNLITQQ--NQLILENSKLRDLQECLVNSKSEEMNLQI---NELQKEIEILKQEEKEKGTLE 703
Cdd:TIGR00606 861 HLKSKTNElKSEKLQIGTNLQRRQQfeEQLVELSTEVQSLIREIKDAKEQDSPLETfleKDQQEKEELISSKETSNKKAQ 940
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 704 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQ--LDAENNILKEEKRvLEDKLKMYSPSEQEERSIAVDPSTSKSADsRWQK 781
Cdd:TIGR00606 941 DKVNDIKEKVKNIHGYMKDIENKIQDGKDDylKQKETELNTVNAQ-LEECEKHQEKINEDMRLMRQDIDTQKIQE-RWLQ 1018
|
730
....*....|....
gi 568932674 782 EVAMLRKETEDLQQ 795
Cdd:TIGR00606 1019 DNLTLRKRENELKE 1032
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
575-753 |
2.35e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 575 MAESQEA--ELERLRTQLlFSHEEELSKLKEDLEvEHRINIEKLKDNLgIHYKQQIDGLQNEMNRKmesmqcetdnlitq 652
Cdd:COG1579 2 MPEDLRAllDLQELDSEL-DRLEHRLKELPAELA-ELEDELAALEARL-EAAKTELEDLEKEIKRL-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 653 QNQLILENSKLRDLQECLVNSKSEEmnlQINELQKEIEILKqeeKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCA 732
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNVRNNK---EYEALQKEIESLK---RRISDLEDEILELMERIEELEEELAELEAELAELEA 138
|
170 180
....*....|....*....|.
gi 568932674 733 QLDAENNILKEEKRVLEDKLK 753
Cdd:COG1579 139 ELEEKKAELDEELAELEAELE 159
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
662-729 |
2.46e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 43.52 E-value: 2.46e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 662 KLRDLQeclvnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 729
Cdd:PRK05431 36 ERRELQ-----TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
109-335 |
2.52e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 109 LDDSSSEQGAQSSQTcLQMVEKELAEKQHDIEELTQELEEMRASFG--------TEGLKQLQEFEAAIKQRDGIITQLTA 180
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlseeaKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 181 NLQQARREKDDTMVEFLELTEQS--QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlqdyqkkeEDLQAQ 258
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI--------------AALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568932674 259 ISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLgglhEQLTQRNQEIQ 335
Cdd:COG3206 307 LQQEAQRILA-SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEAR 378
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2095-2353 |
2.64e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2095 QERNEEIEKLECRVRELEQAL--LASAEPFPKVEDQKRSGAVEADPElslEVQLQVERDAtDRKQKEITNLEEQLEQFRE 2172
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALdkLRSYLPKLNPLREEKKKVSVKSLE---ELIKDVEEEL-EKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2173 ELENKNDEVQEL--------LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTrdqpmlfgKFAQLIQE 2244
Cdd:PRK05771 115 EIKELEQEIERLepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY--------VYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2245 KEIEIDRLNE----QFIKLQQQLKLTTDnKVIEEQKEQIQDLETQIERLmseREHEKKQREEEVEQLTGVVEKLQQEVVS 2320
Cdd:PRK05771 187 KELSDEVEEElkklGFERLELEEEGTPS-ELIREIKEELEEIEKERESL---LEELKELAKKYLEELLALYEYLEIELER 262
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568932674 2321 TEQQREGART---------LPEDE-ESFKHQLDKVTAEKLVLE 2353
Cdd:PRK05771 263 AEALSKFLKTdktfaiegwVPEDRvKKLKELIDKATGGSAYVE 305
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2087-2202 |
2.70e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2087 KEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkvedqkrsgaveadpelslevqlqverdatDRKQKEITNLEEQ 2166
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL--------------------------------------DRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|....*.
gi 568932674 2167 LEQFREELENKNDEVQELLMQLEIQRKESTTRLQEL 2202
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
557-944 |
3.12e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.88 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 557 YKIKLEMLEKEKNAVLDRMaesqEAELERLRTQLLFSH---EEEL---SKLKEDLevehrinIEKLKDNLGIHYKQQIDG 630
Cdd:PTZ00108 986 YLVRLDLYKKRKEYLLGKL----ERELARLSNKVRFIKhviNGELvitNAKKKDL-------VKELKKLGYVRFKDIIKK 1054
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 631 lqNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECL-------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 703
Cdd:PTZ00108 1055 --KSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLsmpiwslTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLE 1132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 704 qevqELQLKTEQLEKQLKEKEDDLQE----KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRW 779
Cdd:PTZ00108 1133 ----DLDKFEEALEEQEEVEEKEIAKeqrlKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 780 QKEVAMLRKETEDLQQQclYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRAlee 859
Cdd:PTZ00108 1209 LDDKPDNKKSNSSGSDQ--EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQY--- 1283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 860 elLSKRGNPAAPKGKSSGIFPSETleIGEVVEKDTTELMEKLEVTKREKLELSEKVSgLSEQLKQthCTINSLSAEVRAL 939
Cdd:PTZ00108 1284 --SPPPPSKRPDGESNGGSKPSSP--TKKKVKKRLEGSLAALKKKKKSEKKTARKKK-SKTRVKQ--ASASQSSRLLRRP 1356
|
....*
gi 568932674 940 KQEKE 944
Cdd:PTZ00108 1357 RKKKS 1361
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1505-1690 |
3.79e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1505 VRKSMHDEVLVSSMDTSRQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLA--- 1581
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerk 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1582 ------QKSSIDTEHVVSERERVLLEELEALKQLPLA---GRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPE 1652
Cdd:pfam17380 474 rkklelEKEKRDRKRAEEQRRKILEKELEERKQAMIEeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRR 553
|
170 180 190
....*....|....*....|....*....|....*...
gi 568932674 1653 DALLDRNLSNERYALkKANNRLLKILLEVVKTTSAAEE 1690
Cdd:pfam17380 554 IQEQMRKATEERSRL-EAMEREREMMRQIVESEKARAE 590
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
520-802 |
3.99e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 520 SEARKSLSTVEDLKAEIVAASEsRKELELKHEAEITNYKIKLEMLEKeknavldrmAESQEAELERLRTQLlfshEEELS 599
Cdd:PRK11281 29 AASNGDLPTEADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDK---------IDRQKEETEQLKQQL----AQAPA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 600 KLKEDLEvehriNIEKLKDNLGIHYKQQIDGLQNemnRKMESMQCET-DNLITQQNQLILENSKLRDLQ--------ECL 670
Cdd:PRK11281 95 KLRQAQA-----ELEALKDDNDEETRETLSTLSL---RQLESRLAQTlDQLQNAQNDLAEYNSQLVSLQtqperaqaALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 671 VNSK-SEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQ--------LKEKEDDLQEKCAQLDAENNIL 741
Cdd:PRK11281 167 ANSQrLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEgntqlqdlLQKQRDYLTARIQRLEHQLQLL 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 742 KE---EKRVLEdklkmyspSEQE-ERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNE 802
Cdd:PRK11281 247 QEainSKRLTL--------SEKTvQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3015-3244 |
4.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3015 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSD 3094
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3095 TLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNE---SQQKIESQKMLHD 3171
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAElaaLRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932674 3172 AQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEEKHSR 3244
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE--------LEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3125-3311 |
4.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3125 KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKmlhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDK 3204
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3205 ERELYAQL--QSREDGGQPPPA--LPSEDL-----------------------LKELQKQLEEKHSRIVELLSETEKYKL 3257
Cdd:COG4942 102 QKEELAELlrALYRLGRQPPLAllLSPEDFldavrrlqylkylaparreqaeeLRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568932674 3258 DSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQ 3311
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
125-589 |
4.42e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 125 LQMVEKELAEKQHDIEELTQE---LEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTAN---LQQARREKDDTMVEF-- 196
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsitIDHLRRELDDRNMEVqr 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 197 LELTEQSQKLQIQFQHLQANETLQ--NSTLSRTA--TDLLQAKRQIFTQQQQLQDYQK-----KEEDLQAQISFLQEKLR 267
Cdd:pfam15921 431 LEALLKAMKSECQGQMERQMAAIQgkNESLEKVSslTAQLESTKEMLRKVVEELTAKKmtlesSERTVSDLTASLQEKER 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 268 AFE-----MEKDRKIENLNAKEIQE----------KQALIDELNTRVVEEEKKTVELKNKVTTADELLG-------GLHE 325
Cdd:pfam15921 511 AIEatnaeITKLRSRVDLKLQELQHlknegdhlrnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGqhgrtagAMQV 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 326 QLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRRVEQETQRKLSHLQAELDEMYGKq 405
Cdd:pfam15921 591 EKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE--------LEKVKLVNAGSERLRAVKDIKQERDQLLNE- 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 406 iVQMKQELINQHMSQIEELKSQHKREMENtlksdtnaaiskeqvnlMNAAINELNVRLQETHAQKEELKGELGVVLG--- 482
Cdd:pfam15921 662 -VKTSRNELNSLSEDYEVLKRNFRNKSEE-----------------METTTNKLKMQLKSAQSELEQTRNTLKSMEGsdg 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 483 -----------EKSALQSQSNDLLEEVRFLREQV---QKARQTIAEQENRLSEarkSLSTVEDLKAEIVAASESRKELEL 548
Cdd:pfam15921 724 hamkvamgmqkQITAKRGQIDALQSKIQFLEEAMtnaNKEKHFLKEEKNKLSQ---ELSTVATEKNKMAGELEVLRSQER 800
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 568932674 549 KHEAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLRTQ 589
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQD-IIQRQEQESVRLKLQ 840
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
2163-2317 |
4.47e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.31 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2163 LEEQLEQFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKEsdsvstrdqpmlfgKFA 2239
Cdd:smart00787 149 LDENLEGLKEDYKLLMKELELLnsiKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE--------------KLK 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 2240 QLIQEKEIEIDRLNEQfiklqqQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQE 2317
Cdd:smart00787 215 KLLQEIMIKVKKLEEL------EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3157-3330 |
4.61e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3157 NESQQKIESQKMLHDAQLSEEQGrNLGLQALLESEQvRIQEMKSTLDKERELYAQLQSR-EDGGQPPPALPSEDLLKELQ 3235
Cdd:COG3206 192 EEAEAALEEFRQKNGLVDLSEEA-KLLLQQLSELES-QLAEARAELAEAEARLAALRAQlGSGPDALPELLQSPVIQQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3236 KQLEEKHSRIVELLSeteKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKL 3315
Cdd:COG3206 270 AQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
170
....*....|....*
gi 568932674 3316 DLEGKRLQGLMQEFQ 3330
Cdd:COG3206 347 PELEAELRRLEREVE 361
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
638-744 |
4.90e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 638 KMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLE 717
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 568932674 718 KQLKEKEDDLQEKCAQLDAENNILKEE 744
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1823-2216 |
4.92e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1823 ESFRQKQEATESLHcleelrERLQEESRAREQLAEELNKAESVIDGYSDEKTL--FERQIQEKTDIIEHLEQEVLCMNNR 1900
Cdd:COG4717 88 EEYAELQEELEELE------EELEELEAELEELREELEKLEKLLQLLPLYQELeaLEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1901 LQELESDQRRVEEERQLLCRQREAMRAEAGPVEQRPIDAAAGAARGAEFLQETEKLMKEKLEV------QCQAEKVRGDL 1974
Cdd:COG4717 162 EEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEleeeleQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1975 QKQVKALEIDVE--------EQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQ-EIQKL 2045
Cdd:COG4717 242 EERLKEARLLLLiaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEElEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2046 EHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRcsellLSKEQLQRDIQERNEEIEKLecrvreLEQALLASAEPFPKV 2125
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELLRE-----AEELEEELQLEELEQEIAAL------LAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2126 EDQKRSGAVEADPELSLEVQLQVERDATDRKQKEIT--NLEEQLEQFREELENKNDEVQELLMQL-----EIQRKESTTR 2198
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELaeleaELEQLEEDGE 470
|
410
....*....|....*...
gi 568932674 2199 LQELQQENRLFKDEIEKL 2216
Cdd:COG4717 471 LAELLQELEELKAELREL 488
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
385-613 |
5.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 385 QETQRKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKSQHKReMENTLKSDTNAA-----IS-----KEQVNLM 452
Cdd:COG4913 606 FDNRAKLAALEAELAEL-EEELAEAEERLeaLEAELDALQERREALQR-LAEYSWDEIDVAsaereIAeleaeLERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 453 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ-----ENRLSEARKSLS 527
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElrallEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 528 T---VEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQeAELERLRTQLLFSHEEELSKLKED 604
Cdd:COG4913 764 ErelRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYL-ALLDRLEEDGLPEYEERFKELLNE 842
|
....*....
gi 568932674 605 LEVEHRINI 613
Cdd:COG4913 843 NSIEFVADL 851
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1986-2362 |
5.42e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1986 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKlEHQLKAVPRIQPVSEHQARE 2065
Cdd:pfam09731 44 EEVVLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVA-EEEKEATKDAAEAKAQLPKS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2066 VEQLTNHLKEKTdrcSELLLSKEQLQRDIQE-RNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAvEADPELSLEV 2144
Cdd:pfam09731 123 EQEKEKALEEVL---KEAISKAESATAVAKEaKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKA-EALAEKLKEV 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2145 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEllmqlEIQRKESTTRLQELQQENR-LFKDEIEKLgfaMKES 2223
Cdd:pfam09731 199 INLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEK-----AQSLAKLVDQYKELVASERiVFQQELVSI---FPDI 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2224 DSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDnKVIEEQKEQIQDL-ETQIERLMSEREHEKKQREE 2302
Cdd:pfam09731 271 IPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIE-RALEKQKEELDKLaEELSARLEEVRAADEAQLRL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2303 EVE--------------------QLTGVVEKLQQEVVSTEQ--QREGAR----TLPEDEESFKHQLDKVTAEKLVLEQQV 2356
Cdd:pfam09731 350 EFErereeiresyeeklrtelerQAEAHEEHLKDVLVEQEIelQREFLQdikeKVEEERAGRLLKLNELLANLKGLEKAT 429
|
....*.
gi 568932674 2357 ETTNQV 2362
Cdd:pfam09731 430 SSHSEV 435
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3077-3310 |
5.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3077 AFRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRntqlnllleqqkqlL 3156
Cdd:PTZ00121 1271 AIKAEEARKADELK-----KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--------------A 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3157 NESQQKIESQKMLHDAQLSEEQGRNLGLQAllESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpsEDLLKELQK 3236
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKAEE-----------KKKADEAKK 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568932674 3237 QLEEKHSRIVELL-SETEKYKLDSLqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3310
Cdd:PTZ00121 1399 KAEEDKKKADELKkAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
432-768 |
5.68e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 432 MENTLKSdtnaaiSKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDL---LEEVRFLREQVQKA 508
Cdd:PRK01156 188 LEEKLKS------SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELsslEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 509 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRT 588
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 589 QLLFSHEEELSKLKEDLEVEHR------INIEKLKDNLGiHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSK 662
Cdd:PRK01156 342 IKKKSRYDDLNNQILELEGYEMdynsylKSIESLKKKIE-EYSKNIERMSAFISEILKIQEIDPDAIKKELNEI---NVK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 663 LRDlqeclVNSKSEEMNLQINEL-QKEIEILKQEEKEKGTLEQEVQELQL---KTEQLEKQLKEKEDDLQEKCAQLDAEN 738
Cdd:PRK01156 418 LQD-----ISSKVSSLNQRIRALrENLDELSRNMEMLNGQSVCPVCGTTLgeeKSNHIINHYNEKKSRLEEKIREIEIEV 492
|
330 340 350
....*....|....*....|....*....|
gi 568932674 739 NILKEEKRVLEdKLKMYSPSEQEERSIAVD 768
Cdd:PRK01156 493 KDIDEKIVDLK-KRKEYLESEEINKSINEY 521
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
352-559 |
5.89e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 352 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRkLSHLQAELDEmygkqiVQMKQELINQHMSQIEELKSQHK 429
Cdd:COG3206 181 EEQLPELRKELEEAEAAleEFRQKNGLVDLSEEAKLLLQQ-LSELESQLAE------ARAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 430 REMENTLKSDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE-KSALQSQSNDLLEEVRFLREQVQKA 508
Cdd:COG3206 254 DALPELLQSPVIQQL-RAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILASLEAELEALQAREASL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568932674 509 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASE-------SRKELELKHEAEITNYKI 559
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRRLEREVEVARElyesllqRLEEARLAEALTVGNVRV 390
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2157-2334 |
6.74e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 6.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2157 QKEITNLEEQLEQFREELENKNDEVQELlmQLEIQRKESttrlqELQQENRLFKDEIEKLGFAM--KESDSVstrdqpml 2234
Cdd:COG1579 30 PAELAELEDELAALEARLEAAKTELEDL--EKEIKRLEL-----EIEEVEARIKKYEEQLGNVRnnKEYEAL-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2235 fgkfaqliqEKEIEIdrlneqfiklqQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKL 2314
Cdd:COG1579 95 ---------QKEIES-----------LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170 180
....*....|....*....|.
gi 568932674 2315 QQEVVSTEQQREGAR-TLPED 2334
Cdd:COG1579 155 EAELEELEAEREELAaKIPPE 175
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1950-2102 |
7.02e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 1950 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALeIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAi 2029
Cdd:PRK12704 60 LEAKEEIHKLRNEFEKELRERRNELQKLEKRL-LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI- 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568932674 2030 dreherdvfQQEIQKLEhqlkavpRIQPVSEHQARevEQLTNHLKEKtdrcselllSKEQLQRDIQERNEEIE 2102
Cdd:PRK12704 138 ---------EEQLQELE-------RISGLTAEEAK--EILLEKVEEE---------ARHEAAVLIKEIEEEAK 183
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
125-554 |
7.25e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 125 LQMVEKELAEKQhdIEELTQELEEMRASfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQ 204
Cdd:PRK03918 374 LERLKKRLTGLT--PEKLEKELEELEKA-KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 205 KlqiqfqHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLqEKLRAFEmekdRKIENLNAKE 284
Cdd:PRK03918 451 K------ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKELE----EKLKKYNLEE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 285 IQEKQALIDELNTRVVEEEKKTVELKNKVttadELLGGLHEQLTQRNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVE 363
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 364 ELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEmygkqivqmKQELINQHMSQIEELKSQhkrementlksdtnaa 443
Cdd:PRK03918 596 ELEP--FYNEYLELKDAEKELEREEKELKKLEEELDK---------AFEELAETEKRLEELRKE---------------- 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 444 iskeqvnlmnaaINELNVRL-QETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEA 522
Cdd:PRK03918 649 ------------LEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
410 420 430
....*....|....*....|....*....|..
gi 568932674 523 RKSLSTVEDLKAEIVAASESRKELELKHEAEI 554
Cdd:PRK03918 717 EKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
414-589 |
8.00e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 414 INQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKsalqsQSND 493
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-----EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 494 LLEEVRFLREQVQKARQTIAEQENRLSEARKslsTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLD 573
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEE---ELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
170
....*....|....*.
gi 568932674 574 RMAESQEAELERLRTQ 589
Cdd:COG1579 171 KIPPELLALYERIRKR 186
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
263-584 |
9.15e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 263 QEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVelknkvttadelLGGLHEQLT-QRNQEIQSLKLEl 341
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAA------------IYAEQERMAmERERELERIRQE- 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 342 GNSQQNERKCSEEIK---ELMRTVEELQ-KRNLKDSWL--ETSAVRRV---EQETQRKLSHLQAELDemygkqivQMKQE 412
Cdd:pfam17380 357 ERKRELERIRQEEIAmeiSRMRELERLQmERQQKNERVrqELEAARKVkilEEERQRKIQQQKVEME--------QIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 413 LINQHMSQIEELKSQHKREMENTLKSDTNaaiSKEQVNlmnaainelnvRLQETHAQKEELKGELGVVLGEKSALQSQSN 492
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQE---RQQQVE-----------RLRQQEEERKRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 493 DLLEevrflrEQVQKARQTIAEQENRLSEARKSLSTVEDLKAE----IVAASESRKELELKHEAEI-------TNYKIKL 561
Cdd:pfam17380 495 KILE------KELEERKQAMIEEERKRKLLEKEMEERQKAIYEeerrREAEEERRKQQEMEERRRIqeqmrkaTEERSRL 568
|
330 340
....*....|....*....|...
gi 568932674 562 EMLEKEKNaVLDRMAESQEAELE 584
Cdd:pfam17380 569 EAMERERE-MMRQIVESEKARAE 590
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
2094-2315 |
9.19e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2094 IQERNEEIEKLECRVRELEQallasaepfpKVEDQKRSgaveadpelsLEVQLQVERDATDRKQKEITNLEEQLEQFREE 2173
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQ----------QIKTYNKN----------IEEQRKKNGENIARKQNKYDELVEEAKTIKAE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2174 LENKNDEVQELLMQLEiqrkESTTRLQELQQENRLFKDEIEKLGFAMK---ESDSVST-----RDQPMLFGKFAQLIQEK 2245
Cdd:PHA02562 236 IEELTDELLNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyeKGGVCPTctqqiSEGPDRITKIKDKLKEL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 2246 EIEIDRLNEQFIKLQ--------QQLKLTTDNKVIEEQKEQIQ-------DLETQIERLMSEREHEKKQREEEVEQLTGV 2310
Cdd:PHA02562 312 QHSLEKLDTAIDELEeimdefneQSKKLLELKNKISTNKQSLItlvdkakKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
....*
gi 568932674 2311 VEKLQ 2315
Cdd:PHA02562 392 VKTKS 396
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3221-3315 |
9.92e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568932674 3221 PPPALPSEDLLKELQKQLEEKHSRIVEL---LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSK 3297
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELekeLAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90
....*....|....*...
gi 568932674 3298 VEELQRQLQEKRQQVYKL 3315
Cdd:COG4942 92 IAELRAELEAQKEELAEL 109
|
|
| |
