|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-656 |
9.05e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 9.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 124 QELQSVQKLYQEHMTEAQIHEFENRKQKDQlNNFQQLTKKLHVANENIEmtnhhflktvtEQNMEIEKLRKHLRQARLDL 203
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELE-AELEELEAELEELEAELA-----------ELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 204 RVAVSKVEELTKvteglqeQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVLKTGKSNLEKQIKEL 283
Cdd:COG1196 284 EEAQAEEYELLA-------ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 284 QAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQLIQDAA--IKARKEVESTKKQYEIL 361
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLErlEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 362 ISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENR 441
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 442 IKQLEINS--SEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKET--EDLRKVALEAQKKAKLKVSTME 517
Cdd:COG1196 517 AGLRGLAGavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGraTFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 518 HQFSIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEET--KKLTESAEMRISSLKSELSRQKLHTQELLSQL 595
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLagRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568921330 596 EMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKAASMMNLENI 656
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
182-505 |
1.65e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 182 VTEQNMEIEKLRKhlrqarlDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCV 261
Cdd:TIGR02168 672 ILERRREIEELEE-------KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 262 AIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEAN--IKQNQILLEEKQKEVDREK-------M 332
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeeLKALREALDELRAELTLLNeeaanlrE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 333 KKTMSQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYR 412
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 413 KLE----EMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLESEREncgfvseqrlKLQQEN 488
Cdd:TIGR02168 905 ELEskrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE----------EARRRL 974
|
330
....*....|....*..
gi 568921330 489 EQLQKETEDLRKVALEA 505
Cdd:TIGR02168 975 KRLENKIKELGPVNLAA 991
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-623 |
5.53e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 99 RILQEQLQLAnqEKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLnnfQQLTKKLHVANENIEMTNhhf 178
Cdd:COG1196 216 RELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL---EELRLELEELELELEEAQ--- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 179 lKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESR 258
Cdd:COG1196 288 -AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 259 LCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQ 338
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 339 LIQDAAIKARKEVESTKKQYEIL--ISQLKEELSTLQMDCDEKQGQIDRAIR------------GKRAVEEELEKIYREG 404
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLeeAALLEAALAELLEELAEAAARLLLLLEaeadyegflegvKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 405 KQDESDYRKLEE---------MHQRCLAAERSKDDLQLRLKSAE---------NRIKQLEINSSEEMSRSHEMIQKLQTV 466
Cdd:COG1196 527 AVLIGVEAAYEAaleaalaaaLQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 467 LESERENCGFVSEQRLkLQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELR 546
Cdd:COG1196 607 DLREADARYYVLGDTL-LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 547 HLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEH-------------- 612
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEaleelpeppdleel 765
|
570
....*....|.
gi 568921330 613 QEKANRLQRRL 623
Cdd:COG1196 766 ERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-504 |
9.28e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 9.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 122 ASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQARL 201
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 202 DLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVlktgksnLEKQIK 281
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED-------LEEQIE 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 282 ELQakcsesenEKYEAISRARDSMQLLEEANIKQNQILLEEK-QKEVDREKMKKTMSQLIQDaaikaRKEVESTKKQYEI 360
Cdd:TIGR02168 849 ELS--------EDIESLAAEIEELEELIEELESELEALLNERaSLEEALALLRSELEELSEE-----LRELESKRSELRR 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 361 LISQLKEELSTLQMDCDEKQGQIDRaIRGKRAVEEELEkiyregkqdesdyrkLEEMHQRCLAAERSKDDLQLRLKSAEN 440
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDN-LQERLSEEYSLT---------------LEEAEALENKIEDDEEEARRRLKRLEN 979
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568921330 441 RIKQL-EIN--SSEEmsrshemiqklqtvLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALE 504
Cdd:TIGR02168 980 KIKELgPVNlaAIEE--------------YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-652 |
6.61e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 6.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 122 ASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQARL 201
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 202 DLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRlcVAIEEADVLKTGKSNLEKQIK 281
Cdd:TIGR02168 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR--RERLQQEIEELLKKLEEAELK 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 282 ELQAKCSESENEKYEAISRARDSMQLLEEAN--IKQNQILLEEKQKEVDREKMKKTMSQLIQDAA---IKARKEVESTKK 356
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELReeLEEAEQALDAAERELAQLQARLDSLERLQENLegfSEGVKALLKNQS 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 357 QYEILISQLKEELST---------------LQMDCDEKQGQIDRAI------RGKRAVEEELEKIYREGKQDESDYRKLE 415
Cdd:TIGR02168 517 GLSGILGVLSELISVdegyeaaieaalggrLQAVVVENLNAAKKAIaflkqnELGRVTFLPLDSIKGTEIQGNDREILKN 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 416 EMHQRCLAAERSKDDLQLR---------------LKSAENRIKQLE------------INSSEEMSRSHEMIQKLQTVLE 468
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRkalsyllggvlvvddLDNALELAKKLRpgyrivtldgdlVRPGGVITGGSAKTNSSILERR 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 469 SERENCgfvSEQRLKLQQENEQLQKETEDLRKvALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHL 548
Cdd:TIGR02168 677 REIEEL---EEKIEELEEKIAELEKALAELRK-ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 549 LAAQQKTANRWKEETKKLTES------AEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRR 622
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAeeelaeAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
570 580 590
....*....|....*....|....*....|
gi 568921330 623 LSQAEERAASASQQLSVITVQRRKAASMMN 652
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
364-632 |
3.10e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 364 QLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDEsdyRKLEEMHQRCLAAERSKDDLQLRLKSAENRIK 443
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 444 QLEINSSEEMSRSHEMIQKLQTVLESEREncgfvseqrlkLQQENEQLQKETEDLRkvalEAQKKAKLKVSTMEHQFSIK 523
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAE-----------LEEKLEELKEELESLE----AELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 524 EHGFE------VQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESA-EMRISSLKSELSRQKLHTQELLSQLE 596
Cdd:TIGR02168 378 EEQLEtlrskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELE 457
|
250 260 270
....*....|....*....|....*....|....*.
gi 568921330 597 MANEKVAENEKLILEHQEKANRLQRRLSQAEERAAS 632
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1-498 |
3.51e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.44 E-value: 3.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 1 MQNSMSKGGRGDTLVDSINEQSSLPPLIAEYEKHLEELNRQLTYYQKHMGemKLQLETVITENERLHSKLK--------- 71
Cdd:TIGR01612 1175 IENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLG--KLFLEKIDEEKKKSEHMIKameayiedl 1252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 72 DAVEKQLEALPFGTGIGNDICADDETVRIL-----------QEQLQLANQEKTWALELWQTASQE--LQSVQKLYQEHMT 138
Cdd:TIGR01612 1253 DEIKEKSPEIENEMGIEMDIKAEMETFNIShdddkdhhiisKKHDENISDIREKSLKIIEDFSEEsdINDIKKELQKNLL 1332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 139 EAQIH---------EFENRKQKDQLNNFQQLTKKLHVANENIEMTNhhflKTVTEQNMEIEKLRKHLRQaRLDLRVAVSK 209
Cdd:TIGR01612 1333 DAQKHnsdinlylnEIANIYNILKLNKIKKIIDEVKEYTKEIEENN----KNIKDELDKSEKLIKKIKD-DINLEECKSK 1407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 210 VEE----------LTKVTEgLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADvlKTGKSNLEKQ 279
Cdd:TIGR01612 1408 IEStlddkdidecIKKIKE-LKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKK--DNATNDHDFN 1484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 280 IKELQAKCSESENEKYEAISRARdsmqlleeaNIKQNQILLEEKQKEVdrekmkktMSQLIQDAAIKARKEVESTKKQYE 359
Cdd:TIGR01612 1485 INELKEHIDKSKGCKDEADKNAK---------AIEKNKELFEQYKKDV--------TELLNKYSALAIKNKFAKTKKDSE 1547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 360 ILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLAAERSK---DDLQLRLK 436
Cdd:TIGR01612 1548 IIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKkkiNDCLKETE 1627
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568921330 437 SAENRIKQLEINSSE-EMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDL 498
Cdd:TIGR01612 1628 SIEKKISSFSIDSQDtELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDV 1690
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-625 |
4.21e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 275 NLEKQIKELQAKCSESENEkyeaISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQLIQDAAIKARkevest 354
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKA----LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA------ 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 355 kkQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRclaAERSKDDLQLR 434
Cdd:TIGR02168 751 --QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL---LNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 435 LKSAENRIKQLEinsseemsrshEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLrkvaLEAQKKAKLKVS 514
Cdd:TIGR02168 826 LESLERRIAATE-----------RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL----LNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 515 TMEHQFSIKEHgfevQLREMEDSNRnsivELRHLLAAQQKTANRWKEETkkltESAEMRISSLKSELSrqklhtQELLSQ 594
Cdd:TIGR02168 891 LLRSELEELSE----ELRELESKRS----ELRRELEELREKLAQLELRL----EGLEVRIDNLQERLS------EEYSLT 952
|
330 340 350
....*....|....*....|....*....|.
gi 568921330 595 LEMANEKVAENEKLILEHQEKANRLQRRLSQ 625
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
103-617 |
1.06e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 103 EQLQLANQEKTWALELWQTASQ---ELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENiEMTNHHFL 179
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE-AKKKADAA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 180 KTVTEQNMEIEKLRKHLRQARldlrvavSKVEELTKVTEGLQ--EQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLES 257
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDK-------KKADELKKAAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 258 RLCVAIEEADVLKTGKSNLEKQIKElqAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMS 337
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEE--AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 338 QLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVE---EELEKIYREGKQDESDYRKL 414
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEariEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 415 EE-----MHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEmiQKLQTVLESERENCGFVSEQRLKLQQENE 489
Cdd:PTZ00121 1615 AEeakikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA--AEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 490 QLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHGFEV-QLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTE 568
Cdd:PTZ00121 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 568921330 569 SAEMRISSLKSELSRQKlhtQELLSQLEMANEKVAENEKLILEHQEKAN 617
Cdd:PTZ00121 1773 IRKEKEAVIEEELDEED---EKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
179-628 |
1.51e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 179 LKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESR 258
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 259 LCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEA----------ISRARDSMQLLEE-ANIKQNQILLEEKQKEV 327
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECrvaaqahneeAESLREDADDLEErAEELREEAAELESELEE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 328 DREKMKKTMSQL--IQDAAIKARKEVESTKKQYEILISQLKEELSTLQmDCDEKQGQIDRAIRGKRAVEEELEKIYREGK 405
Cdd:PRK02224 375 AREAVEDRREEIeeLEEEIEELRERFGDAPVDLGNAEDFLEELREERD-ELREREAELEATLRTARERVEEAEALLEAGK 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 406 --------QDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLE--INSSEEMSRSHEMIQKLQTVLESERENCG 475
Cdd:PRK02224 454 cpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 476 FVSEQRLKLQQENEQLQKETEDLRKVALEAQKKAKlkvstmEHQFSIKEhgFEVQLREMEDSnRNSIVELRHLLAAQQKT 555
Cdd:PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAE------EAREEVAE--LNSKLAELKER-IESLERIRTLLAAIADA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 556 ANRWKEETKKLTESAEM-------------RISSLKSELSRQKLhtQELLSQLEMANEKVAENEKLILEHQEKANRLQRR 622
Cdd:PRK02224 605 EDEIERLREKREALAELnderrerlaekreRKRELEAEFDEARI--EEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
|
....*.
gi 568921330 623 LSQAEE 628
Cdd:PRK02224 683 IGAVEN 688
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
207-621 |
2.37e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 207 VSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRvqQLQSSIKQLESRLCVAIEEA-DVLKTGKSNLEKQIKELQA 285
Cdd:PTZ00121 1139 ARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK--KAEAARKAEEVRKAEELRKAeDARKAEAARKAEEERKAEE 1216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 286 KCSESENEKYEAISRARDSMQLLEEANiKQNQILLEEKQKEVDREKMKKTMSQLIQDAAIKARKEVESTKKQYEILISQL 365
Cdd:PTZ00121 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAK-KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 366 KEELSTLQMDCDEKQGQidrairGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQL 445
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAE------EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 446 EINSSEEMSRSHEMIQKLQTVLESErENCGFVSEQRLKLQQ--ENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIK 523
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKAD-EAKKKAEEDKKKADElkKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 524 EHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMrisslKSELSRQKLHTQELLSQLEMANEKVA 603
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK-----KADEAKKAAEAKKKADEAKKAEEAKK 1523
|
410
....*....|....*...
gi 568921330 604 ENEKLILEHQEKANRLQR 621
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAKK 1541
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
162-632 |
4.01e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 162 KKLHVANENIEMTNHHFLKTVTEQNMEIEKLRKHLRQarldLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEAS 241
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPE----LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 242 DRRVQQLQSSIKQLESRLCV------AIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQ 315
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEEleekvkELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 316 NQI-LLEEKQKEVDREKMKKTMSQLIQDAAIKARKEVESTKKQYEIL----ISQLKEELSTLQMDCDEKQGQIDRAIRGK 390
Cdd:PRK03918 338 ERLeELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLtpekLEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 391 RAVEEELEKIYREGKQDESDY----RKLEEMHQRCLAAERSKD--DLQLRLKSAENRIKQLEINSSEEmsrshEMIQKLQ 464
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAElkRIEKELKEIEEKERKLRKELREL-----EKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 465 TVLESERENCGFVSEQRLKLQQEN-EQLQKETEDLRKVaLEAQKKAKLKVSTMEHQFSiKEHGFEVQLREMEDSNRNSIV 543
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKL-KEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 544 ELRHLLAAQQKTANRWKEETKKLTESAE------MRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKAN 617
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
490
....*....|....*
gi 568921330 618 RLQRRLSQAEERAAS 632
Cdd:PRK03918 651 ELEKKYSEEEYEELR 665
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
291-508 |
5.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 291 ENEKYEAISRARDSMQLLEEAnikQNQILLEEKQKEV------DREKMKKTMSQLIQDAAIKARKEVESTKKQYEilisQ 364
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA---HEALEDAREQIELlepireLAERYAAARERLAELEYLRAALRLWFAQRRLE----L 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 365 LKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREgkQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQ 444
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568921330 445 LEINSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRKV--ALEAQKK 508
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaSLERRKS 436
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
388-650 |
1.85e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 388 RGKRAVEEELEKIYREGKQDESDYRKLEEMhQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTVL 467
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 468 ESERencgfvseQRLKLQQENEQLQKETEDLRKVAL---EAQKKAKLKVSTMEHQFSIKEHGFEVQLREMED-------- 536
Cdd:pfam17380 379 ELER--------LQMERQQKNERVRQELEAARKVKIleeERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEeraremer 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 537 ------SNRNSIVELRHLLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLIL 610
Cdd:pfam17380 451 vrleeqERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIY 530
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 568921330 611 EHQEKANRLQRRLSQAE-ERAASASQQLSVITVQRRKAASM 650
Cdd:pfam17380 531 EEERRREAEEERRKQQEmEERRRIQEQMRKATEERSRLEAM 571
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
98-646 |
2.05e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 98 VRILQEQLQLANQ-EKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEmtnh 176
Cdd:pfam15921 87 VKDLQRRLNESNElHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKE---- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 177 hflKTVTEQNMEIEKLRKHLRQARldlrvavSKVEELTKVTEGLQEQMLKK--EEDIMSA---QGKEEASDRRVQQLQSS 251
Cdd:pfam15921 163 ---DMLEDSNTQIEQLRKMMLSHE-------GVLQEIRSILVDFEEASGKKiyEHDSMSTmhfRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 252 IKQLESRLCVAIEEADVLKTGKSN-----LEKQIKELQAKCSESENEKYEAISRARDSMQlleEANIKQNQILLEEKQKE 326
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARS---QANSIQSQLEIIQEQAR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 327 VDREKMKKTMSQLiQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQ 406
Cdd:pfam15921 310 NQNSMYMRQLSDL-ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 407 DESDYRKLEEMHQRCLAAE-----------RSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLEserencg 475
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDtgnsitidhlrRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLE------- 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 476 fvseqrlKLQQENEQLQKETEDLRKVALEAQKKaKLKVSTMEHQFSIKEHGFEVQLREMEDSNrNSIVELRHLLAAQQKT 555
Cdd:pfam15921 462 -------KVSSLTAQLESTKEMLRKVVEELTAK-KMTLESSERTVSDLTASLQEKERAIEATN-AEITKLRSRVDLKLQE 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 556 ANRWKEETKKLtesaemriSSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQ 635
Cdd:pfam15921 533 LQHLKNEGDHL--------RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRL 604
|
570
....*....|.
gi 568921330 636 QLSVITVQRRK 646
Cdd:pfam15921 605 ELQEFKILKDK 615
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
103-486 |
3.47e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 103 EQLQLANQEKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNfqqLTKKLHVANENIEMTNHHFLKTV 182
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD---LTASLQEKERAIEATNAEITKLR 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 183 TEQNMEIEKLR------KHLRQARLDLRVAVSKVEELTKVTEGLQEQMlkkeEDIMSAQGKEeasDRRVQQLQSSIKQLE 256
Cdd:pfam15921 524 SRVDLKLQELQhlknegDHLRNVQTECEALKLQMAEKDKVIEILRQQI----ENMTQLVGQH---GRTAGAMQVEKAQLE 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 257 SRLCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTM 336
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 337 SQLIQDAAIKArKEVESTKKQYEILISQLKEELST---------------------LQMDCDEKQGQIDRAIRGKRAVEE 395
Cdd:pfam15921 677 EVLKRNFRNKS-EEMETTTNKLKMQLKSAQSELEQtrntlksmegsdghamkvamgMQKQITAKRGQIDALQSKIQFLEE 755
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 396 ELEKIYREGKQDESDYRKLEEmHQRCLAAERSKDDLQLR-LKSAENRIKQLEINSSEEMSRSHEMIQKLQTVLESEREnc 474
Cdd:pfam15921 756 AMTNANKEKHFLKEEKNKLSQ-ELSTVATEKNKMAGELEvLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ-- 832
|
410
....*....|..
gi 568921330 475 gfvSEQRLKLQQ 486
Cdd:pfam15921 833 ---ESVRLKLQH 841
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
561-653 |
6.99e-04 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 43.02 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 561 EETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVI 640
Cdd:PRK11448 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQK 217
|
90
....*....|....
gi 568921330 641 TVQR-RKAASMMNL 653
Cdd:PRK11448 218 RKEItDQAAKRLEL 231
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
216-360 |
8.91e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 216 VTEGLQEQMLKKEEDimSAQGKEEASDRRVQQLQSSIKQLESRlcvaIEEadvLKTGKSNLEKQIKELQAKCSESENEKY 295
Cdd:COG2433 381 ALEELIEKELPEEEP--EAEREKEHEERELTEEEEEIRRLEEQ----VER---LEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 296 EAISRARDSMQLLEEANIKQNQI-----LLEEKQKEVDR-----EKMKKTMSQLIQDAAIKA-------RKEVESTKKQY 358
Cdd:COG2433 452 EARSEERREIRKDREISRLDREIerlerELEEERERIEElkrklERLKELWKLEHSGELVPVkvvekftKEAIRRLEEEY 531
|
..
gi 568921330 359 EI 360
Cdd:COG2433 532 GL 533
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
204-421 |
9.34e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.32 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 204 RVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVLKTGKSNLEKQ---- 279
Cdd:pfam05667 310 NEAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQykvk 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 280 -------------IKELQAKCSESEN------EKYEAIsRARDSMQLLEEANIKQNQiLLEEKQKEVDREKMKKTMSQLI 340
Cdd:pfam05667 390 kktldllpdaeenIAKLQALVDASAQrlvelaGQWEKH-RVPLIEEYRALKEAKSNK-EDESQRKLEEIKELREKIKEVA 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 341 QDAAIKAR------KEVES----------TKKQYEIL--ISQLKEELSTLQMDCDEKQGQIDRAI-RGKRAVEEELEKIY 401
Cdd:pfam05667 468 EEAKQKEElykqlvAEYERlpkdvsrsayTRRILEIVknIKKQKEEITKILSDTKSLQKEINSLTgKLDRTFTVTDELVF 547
|
250 260
....*....|....*....|...
gi 568921330 402 REGKQDES---DYRKLEEMHQRC 421
Cdd:pfam05667 548 KDAKKDESvrkAYKYLAALHENC 570
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-403 |
9.38e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 180 KTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRl 259
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 260 cvaieeadvLKTGKSNLEKQIKELQAKCSESENE---KYEAISRARDSMQLLEEANiKQNQILLEEKQKEVDREKMKKTM 336
Cdd:COG4942 99 ---------LEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLA-PARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568921330 337 SQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYRE 403
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
206-416 |
1.13e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 206 AVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAIEEADVLKTGKSNLEKQIKELQA 285
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 286 KCSESENE------KYEAISRARDSMQLLEEANIKQNQILLE--EKQKEVDREKMKKTMSQLIQDAAIKArkEVESTKKQ 357
Cdd:COG4942 98 ELEAQKEElaellrALYRLGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRA--ELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568921330 358 YEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEE 416
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
179-450 |
1.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 179 LKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVtEGLQEQMLKKEEDIMSAqgkeEASDRRVQQLQSSIKQLESR 258
Cdd:COG4913 626 LAEAEERLEALEAELDALQERREALQRLAEYSWDEIDV-ASAEREIAELEAELERL----DASSDDLAALEEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 259 LCVAIEEADVLKTGKSNLEKQIKELQakcsesenekyEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMSQ 338
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAE-----------EELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 339 LIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDcdekqgqIDRAIRGKRAVEEELEKIYREGKqdesdYRKLEEMH 418
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNREWPAETAD-------LDADLESLPEYLALLDRLEEDGL-----PEYEERFK 837
|
250 260 270
....*....|....*....|....*....|....*
gi 568921330 419 QRCL-AAERSKDDLQLRLKSAENRIKQ--LEINSS 450
Cdd:COG4913 838 ELLNeNSIEFVADLLSKLRRAIREIKEriDPLNDS 872
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
291-638 |
1.25e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 291 ENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDrEKMKKTMSQliQDAAIKARKEVESTKKQYEilisQLKEELS 370
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELD-EEIERYEEQ--REQARETRDEADEVLEEHE----ERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 371 TLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDyrkLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEinss 450
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE---RDDLLAEAGLDDADAEAVEARREELEDRDEELR---- 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 451 EEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETEDLRkvalEAQKKAKLKVSTMEHQFSIKEHGFE-- 528
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR----EAVEDRREEIEELEEEIEELRERFGda 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 529 -VQLREMED------SNRNSIVELRHLLAAQQKTANRWKEETKKL---------------------TESAEMRISSLKSE 580
Cdd:PRK02224 404 pVDLGNAEDfleelrEERDELREREAELEATLRTARERVEEAEALleagkcpecgqpvegsphvetIEEDRERVEELEAE 483
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 568921330 581 LSRQKLHTQELLSQLEMAnEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLS 638
Cdd:PRK02224 484 LEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAE 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
380-649 |
1.84e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 380 QGQIDRAIRGK----------------------------RAVEEELEKI-----------------------YREGKQDE 408
Cdd:COG1196 143 QGMIDRIIEAKpeerraiieeaagiskykerkeeaerklEATEENLERLedilgelerqleplerqaekaerYRELKEEL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 409 SDYR------KLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEM-----------------IQKLQT 465
Cdd:COG1196 223 KELEaellllKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELeleleeaqaeeyellaeLARLEQ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 466 VLESERENCGFVSEQRLKLQQENEQLQKETEDLRKVALEAQKK---AKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSI 542
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEleeAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 543 VELRHLLAAQQKTANRWKEETKKLT--ESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQ 620
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340
....*....|....*....|....*....
gi 568921330 621 RRLSQAEERAASASQQLSVITVQRRKAAS 649
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
29-393 |
2.58e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 29 AEYEKHLEELNRQLtyyqkhmGEMKLQLETVITENERLHSKLKDAVEKQLEAlpfgtgigndicaDDETVRILQEQLQLA 108
Cdd:TIGR02169 670 RSEPAELQRLRERL-------EGLKRELSSLQSELRRIENRLDELSQELSDA-------------SRKIGEIEKEIEQLE 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 109 NQEKTWALELwqtasQELQSVQKLYQEHMTEAQIHEFENRKQKDQLnnfQQLTKKLHVANENIE-MTNHHFLKTVTEQNM 187
Cdd:TIGR02169 730 QEEEKLKERL-----EELEEDLSSLEQEIENVKSELKELEARIEEL---EEDLHKLEEALNDLEaRLSHSRIPEIQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 188 EIEKLRKHLRQARLDLRVAVSKV----EELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVAI 263
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRLtlekEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 264 EEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQI------LLEEKQKEVDREKMKKTMS 337
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIedpkgeDEEIPEEELSLEDVQAELQ 961
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568921330 338 QL------IQDAAIKARKEVESTKKQYeiliSQLKEELSTLQMDCDEKQGQIDRAIRGKRAV 393
Cdd:TIGR02169 962 RVeeeiraLEPVNMLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
409-647 |
3.45e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 409 SDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIKQLeinsSEEMSRSHEMIQKLQTVLESerencgfVSEQRLKLQQEN 488
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL----SQELSDASRKIGEIEKEIEQ-------LEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 489 EQLQKETEDLrKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIV-ELRHLLAAQQKTANRWkeetKKLT 567
Cdd:TIGR02169 740 EELEEDLSSL-EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRI----EARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 568 ESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKA 647
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
28-399 |
3.75e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 28 IAEYEKHLEELNRQLTYYQKHMGEMKLQLETVIT-----ENERLHSKLKDAVEKQLEALPfGTGIGNDICADDETVRILQ 102
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQqlerlRREREKAERYQALLKEKREYE-GYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 103 EQLQLANQEKTWALELWQTASQELQSVQKLYqehmteAQIHEFENRKQKDQLNNFQQLTKKLHVANENIEmtnhhflKTV 182
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLL------EELNKKIKDLGEEEQLRVKEKIGELEAEIASLE-------RSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 183 TEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLCVA 262
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 263 IEEADVLKTGKSNLEKQIKELQakcsESENEKYEAISRARDSMQLLEEAnIKQNQILLEEKQKEVdrEKMKKTMSQLIQD 342
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQ----EELQRLSEELADLNAAIAGIEAK-INELEEEKEDKALEI--KKQEWKLEQLAAD 463
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 343 AAiKARKEVESTKKQYEIL---ISQLKEELSTLQmdcdEKQGQIDRAIRGKRAVEEELEK 399
Cdd:TIGR02169 464 LS-KYEQELYDLKEEYDRVekeLSKLQRELAEAE----AQARASEERVRGGRAVEEVLKA 518
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
101-646 |
4.11e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 101 LQEQLQLANQEKTWALELWQTASQElqSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQltkKLHVANENIEMTNHHFLK 180
Cdd:pfam15921 243 VEDQLEALKSESQNKIELLLQQHQD--RIEQLISEHEVEITGLTEKASSARSQANSIQS---QLEIIQEQARNQNSMYMR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 181 TVTEQNMEIEKLRKHLRQARldlRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLESRLC 260
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAK---RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 261 VAIEEADVL---KTGKS------------------NLEKQIKELQAKCSESENEKYEAISRARDSMQ-------LLEEAN 312
Cdd:pfam15921 395 LEKEQNKRLwdrDTGNSitidhlrrelddrnmevqRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvssltaQLESTK 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 313 IKQNQILLEEKQKEVDREKMKKTMSQLIQDAAIKARKeVESTKKQYEILISQLKEELSTLQMDCDEKQG--QIDRAIRGK 390
Cdd:pfam15921 475 EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA-IEATNAEITKLRSRVDLKLQELQHLKNEGDHlrNVQTECEAL 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 391 RAVEEELEKIYREGKQDESDYRKLEEMHQRCLAA-ERSKDDLQLRLKSAENRIKQLEINSSEEMSRSHEMIQKLQTvLES 469
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAmQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD-LEL 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 470 ERENCGFVSEQRLK----LQQENEQLQKETEDLRKvaleaqkkaklKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVEL 545
Cdd:pfam15921 633 EKVKLVNAGSERLRavkdIKQERDQLLNEVKTSRN-----------ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 546 RHLLAAQQKTANRWKeeTKKLTESAEMRIS-SLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLS 624
Cdd:pfam15921 702 KSAQSELEQTRNTLK--SMEGSDGHAMKVAmGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELS 779
|
570 580
....*....|....*....|..
gi 568921330 625 QAEERAASASQQLSVITVQRRK 646
Cdd:pfam15921 780 TVATEKNKMAGELEVLRSQERR 801
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
421-649 |
5.31e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 421 CLAAERSKDDLQLRLKSAENRIKQLE---INSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETED 497
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEkelAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 498 LRKVALEAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVeLRHLLAAQQKTANRWKEETKKLTESAEmrisSL 577
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRA----EL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568921330 578 KSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQLSVITVQRRKAAS 649
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
115-637 |
5.71e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 115 ALELW-QTAS-QELQSVQKLYQEHM-----TEAQIHEFenRKQKDQLNNFQQLTKKlhvANENIEMtnhhfLKTVTEQNM 187
Cdd:COG4913 193 ALRLLhKTQSfKPIGDLDDFVREYMleepdTFEAADAL--VEHFDDLERAHEALED---AREQIEL-----LEPIRELAE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 188 EIEKLRKHLRQ-----ARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSS--------IKQ 254
Cdd:COG4913 263 RYAAARERLAEleylrAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQirgnggdrLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 255 LESRLCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARdsmQLLEEANIKQNQILLEEKQKEVDREKMKK 334
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA---ALLEALEEELEALEEALAEAEAALRDLRR 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 335 TMSQLIQD-AAIKARKEVEStkKQYEILISQLKEELST-----------LQMDCDEK--QGQIDRAIRGKR---AVEEE- 396
Cdd:COG4913 420 ELRELEAEiASLERRKSNIP--ARLLALRDALAEALGLdeaelpfvgelIEVRPEEErwRGAIERVLGGFAltlLVPPEh 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 397 ----LEKIYREGKQDESDYRKLEEMHQRCLAAERSKDDLQLRLKSAENRIK---QLEINS--------SEE--------- 452
Cdd:COG4913 498 yaaaLRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRawlEAELGRrfdyvcvdSPEelrrhprai 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 453 -----MSRSHEMIQKLQTVLESERENCGFVSEQRLK-LQQENEQLQKETEDLRKVALEAQKKAKLKVSTMEHQFSIKEHG 526
Cdd:COG4913 578 tragqVKGNGTRHEKDDRRRIRSRYVLGFDNRAKLAaLEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 527 F---------------EVQLREMEDSNrnsiVELRHlLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQEL 591
Cdd:COG4913 658 WdeidvasaereiaelEAELERLDASS----DDLAA-LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL 732
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 568921330 592 LSQLEMANEKVAENEKLILE-----------HQEKANRLQRRLSQAEERAASASQQL 637
Cdd:COG4913 733 QDRLEAAEDLARLELRALLEerfaaalgdavERELRENLEERIDALRARLNRAEEEL 789
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
103-521 |
5.83e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 103 EQLQLANQEKTWALELWQTASQELQSVQKLYQEHMTEAQIHEFENRKQKDQLNNFQQLTKKLHVaneniemtnhhflKTV 182
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK-------------KKA 1566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 183 TEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQ----EQMLKKEEDIMSAQ--GKEEASDRRVQQLQSSIKQLE 256
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaEEAKKAEEAKIKAEelKKAEEEKKKVEQLKKKEAEEK 1646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 257 SRLCVAIEEADVLKTGKSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEAniKQNQILLEEKQKEVDREKMKKTM 336
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKEAEEKKKAEELKKA 1724
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 337 SQLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKiyREGKQDESDYRKLEE 416
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE--EDEKRRMEVDKKIKD 1802
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 417 MHQRCLAAERSKDDLQLRLksaeNRIKQLEINSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLKLQQENEQLQKETE 496
Cdd:PTZ00121 1803 IFDNFANIIEGGKEGNLVI----NDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKE 1878
|
410 420
....*....|....*....|....*
gi 568921330 497 DLRKVALEAQKKAKLKVSTMEHQFS 521
Cdd:PTZ00121 1879 DDEEEIEEADEIEKIDKDDIEREIP 1903
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
273-624 |
7.05e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 39.72 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 273 KSNLEKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIK----QNQILLEEKQKEVDREKMKKTMSQLIQ-----DA 343
Cdd:pfam05557 8 KARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRnqelQKRIRLLEKREAEAEEALREQAELNRLkkkylEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 344 AIKARKEVESTKKQYEILISQLKEELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRKLEEMHQRCLA 423
Cdd:pfam05557 88 LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 424 AERSKDDLQLRLKSAENRIKQLEINSSEEMSrshemIQKLQTVLESERENCGFVSEqrlkLQQENEQLQKETEDLRKvAL 503
Cdd:pfam05557 168 AEQRIKELEFEIQSQEQDSEIVKNSKSELAR-----IPELEKELERLREHNKHLNE----NIENKLLLKEEVEDLKR-KL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 504 EAQKKAKLKVSTMEhqfsIKEHGFEVQLREMEDSNRNSIVELRHLLAAQQKTANRWKEEtkkLTESAEmrISSLKSELSR 583
Cdd:pfam05557 238 EREEKYREEAATLE----LEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQRE---IVLKEE--NSSLTSSARQ 308
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568921330 584 QKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLS 624
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVL 349
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
548-637 |
8.27e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 8.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 548 LLAAQQKTANRWKEETKKLTESAEMRISSLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAE 627
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90
....*....|
gi 568921330 628 ERAASASQQL 637
Cdd:COG4942 90 KEIAELRAEL 99
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
134-498 |
8.63e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.55 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 134 QEHMTEAQIHEFENRKQKDQLNNFQQLTkklhvanenIEMTNHHFLKTVTEQNMEIE---------KLRKHLRQA----- 199
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRL---------VEMARELEELSARESDLEQDyqaasdhlnLVQTALRQQekier 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 200 -RLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQgkEEASDRRVQ--QLQSSIKQLESR------LCVAIEEADVLk 270
Cdd:COG3096 352 yQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAE--EEVDSLKSQlaDYQQALDVQQTRaiqyqqAVQALEKARAL- 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 271 TGKSNLE-KQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQ--ILLEEKQKEVDREKMKKTMSQLIQDAAika 347
Cdd:COG3096 429 CGLPDLTpENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKayELVCKIAGEVERSQAWQTARELLRRYR--- 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 348 rkEVESTKKQYEILISQLKE--ELSTLQMDCDEKQGQIDRAIRGKRAVEEELEKIYREGKQD-ESDYRKLEEMHQRCLAA 424
Cdd:COG3096 506 --SQQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQlEELEEQAAEAVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 425 ERSKDDLQLRLKS----------AENRIKQLEINSSEEMSRSHEMIQKLQTVLESEREncgfVSEQRLKLQQENEQLQKE 494
Cdd:COG3096 584 RQQLEQLRARIKElaarapawlaAQDALERLREQSGEALADSQEVTAAMQQLLERERE----ATVERDELAARKQALESQ 659
|
....
gi 568921330 495 TEDL 498
Cdd:COG3096 660 IERL 663
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
127-585 |
9.49e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 39.26 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 127 QSVQKLYQEHMTEAQIHEFEN--RKQKDQLNNFQQLTKKLH-VANENIEMTNH----------HFLKTVTEQNMEIEKLR 193
Cdd:TIGR01612 904 KSIEEEYQNINTLKKVDEYIKicENTKESIEKFHNKQNILKeILNKNIDTIKEsnlieksykdKFDNTLIDKINELDKAF 983
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 194 KHLrqarlDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQ--GKEEASDRRVQQLQSSIKQLESrlcvaIEEadVLKT 271
Cdd:TIGR01612 984 KDA-----SLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQfdEKEKATNDIEQKIEDANKNIPN-----IEI--AIHT 1051
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 272 GKSNLEKQIKELQAKCSESENEkyEAISRARDSMQLLEEANIKQ-----NQILLEEKQKEVDR-EKMKKTMSQLIQDAAi 345
Cdd:TIGR01612 1052 SIYNIIDEIEKEIGKNIELLNK--EILEEAEINITNFNEIKEKLkhynfDDFGKEENIKYADEiNKIKDDIKNLDQKID- 1128
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 346 KARKEVESTKKQYEILISQLKEELSTLQMDCD------------EKQGQIDRAIRGKRAVEEELEKIYREGKQDESDYRK 413
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQINDLEDVADkaisnddpeeieKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTS 1208
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 414 LEEMHQRCLAAERSKDDLQLRL-----KSAENRIKQLE-----INSSEEMSRSHEMIQKLQTVLESERENCGFVSEQRLK 483
Cdd:TIGR01612 1209 LEEVKGINLSYGKNLGKLFLEKideekKKSEHMIKAMEayiedLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKD 1288
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 484 LQQENEQLQKETEDLRKVAL-------EAQKKAKLKVSTMEHQFSIKEHGFEVQLREMEDSNRNSIVELRHLlaaqQKTA 556
Cdd:TIGR01612 1289 HHIISKKHDENISDIREKSLkiiedfsEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKI----KKII 1364
|
490 500
....*....|....*....|....*....
gi 568921330 557 NRWKEETKKLTESAEmrisSLKSELSRQK 585
Cdd:TIGR01612 1365 DEVKEYTKEIEENNK----NIKDELDKSE 1389
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
101-377 |
9.58e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 101 LQEQLQLANQEKTWALELWQTASQELQSVQKLYQEHmtEAQIHEFENRKQKDQlNNFQQLTKKLHVANENIEMTN---HH 177
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEEL--RLEVSELEEEIEELQ-KELYALANEISRLEQQKQILRerlAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 178 FLKTVTEQNMEIEKLRKHLRQARLDLRVAVSKVEELTKVTEGLQEQMLKKEEDIMSAQGKEEASDRRVQQLQSSIKQLEs 257
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE- 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568921330 258 rlcvaieeadvlktgksnleKQIKELQAKCSESENEKYEAISRARDSMQLLEEANIKQNQILLEEKQKEVDREKMKKTMS 337
Cdd:TIGR02168 393 --------------------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568921330 338 QLIQDAAIKARKEVESTKKQYEILISQLKEELSTLQMDCD 377
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| |
