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Conserved domains on  [gi|568910700|ref|XP_006496831|]
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protein PRRC2C isoform X3 [Mus musculus]

Protein Classification

PRCC domain-containing protein( domain architecture ID 10537006)

proline-rich coiled-coil (PRCC) domain-containing protein such as human proline-rich coiled-coil 2A protein (PRRC2A) that may play a role in the regulation of pre-mRNA splicing

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-157 2.38e-45

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


:

Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 163.12  E-value: 2.38e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700     2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTT--VAARHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKnvVPRKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700    79 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSWASN-----------K 127
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWAQAsttagsqggggK 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 568910700   128 QGIQVNSQFQQEFPSLQAAGDQEKKEKEAN 157
Cdd:pfam07001  159 GSNQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1702-1974 5.82e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 5.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1702 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1771
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1772 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1849
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1850 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1926
Cdd:PHA03247 2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568910700 1927 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1974
Cdd:PHA03247 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-157 2.38e-45

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 163.12  E-value: 2.38e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700     2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTT--VAARHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKnvVPRKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700    79 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSWASN-----------K 127
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWAQAsttagsqggggK 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 568910700   128 QGIQVNSQFQQEFPSLQAAGDQEKKEKEAN 157
Cdd:pfam07001  159 GSNQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1702-1974 5.82e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 5.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1702 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1771
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1772 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1849
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1850 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1926
Cdd:PHA03247 2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568910700 1927 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1974
Cdd:PHA03247 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
1744-1875 1.51e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 50.52  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1744 ASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVlASASTTVSVPILTSASIPILASA- 1822
Cdd:COG3469    69 TAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVT-STTSSTAGSTTTSGASATSSAGSt 147

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568910700 1823 ---------LAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASA---ASTVPPPASTV 1875
Cdd:COG3469   148 tttttvsgtETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSAtttATTTGPPTPGL 212
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1752-1874 3.55e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.45  E-value: 3.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700  1752 VSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSP 1831
Cdd:pfam05109  473 VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTP 551

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 568910700  1832 TPVVSAtavpsiSTPAVPASAPTASVP----LAPASAASTVPPPAST 1874
Cdd:pfam05109  552 TPNATS------PTPAVTTPTPNATIPtlgkTSPTSAVTTPTPNATS 592
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-157 2.38e-45

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 163.12  E-value: 2.38e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700     2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTT--VAARHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKnvVPRKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700    79 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSWASN-----------K 127
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWAQAsttagsqggggK 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 568910700   128 QGIQVNSQFQQEFPSLQAAGDQEKKEKEAN 157
Cdd:pfam07001  159 GSNQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1702-1974 5.82e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 5.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1702 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1771
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1772 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1849
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1850 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1926
Cdd:PHA03247 2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568910700 1927 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1974
Cdd:PHA03247 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1748-1979 5.46e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.27  E-value: 5.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1748 ALVPVSTPAPVLTSCPAPVPTSASAPVPASTSspvtassssqPSVPAPTPVLASASTTVSvPILTSASIPILASALAPAT 1827
Cdd:PRK12323  378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA----------PAAAAAARAVAAAPARRS-PAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1828 VSSPTPvvSATAVPsistpaVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPpsapsskqPPPSIRL 1907
Cdd:PRK12323  447 APAPAP--APAAAP------AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP--------PEFASPA 510

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568910700 1908 PSAQTSNGTDFVAAGKSMPTSQSHGSLTAELWDSKVAAPAVLNDISkkLGPISPPQPPSVSAWNKPLTSFGS 1979
Cdd:PRK12323  511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA--TEPVVAPRPPRASASGLPDMFDGD 580
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1710-1874 8.52e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.86  E-value: 8.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1710 APPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQ 1789
Cdd:PRK07003  367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1790 PSVPAPTPVLASASTTVSVPILTSASIPILASALAPAT-------VSSPTPVVSATAVPSISTPAVPASAPTASVPLAPA 1862
Cdd:PRK07003  447 APVPAKANARASADSRCDERDAQPPADSGSASAPASDAppdaafePAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526

                         170
                  ....*....|..
gi 568910700 1863 SAASTVPPPAST 1874
Cdd:PRK07003  527 PPAPEARPPTPA 538
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1711-1928 2.95e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 2.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1711 PPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPV-----PTSASAPV-----PASTSS 1780
Cdd:PHA03247 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRArrlgrAAQASSPPqrprrRAARPT 2691

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1781 PVTASSSSQPSVPAPTPVLASASTTVSVPILTSasiPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLA 1860
Cdd:PHA03247 2692 VGSLTSLADPPPPPPTPEPAPHALVSATPLPPG---PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1861 PASAA--STVPPPASTVQTQTQTQTHKPvqsplPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGKSMPTS 1928
Cdd:PHA03247 2769 PAPPAapAAGPPRRLTRPAVASLSESRE-----SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1744-1871 9.91e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 9.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1744 ASATALVPVSTPAPVltscPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTtvsVPILTSASIPilaSAL 1823
Cdd:PRK14951  376 AEKKTPARPEAAAPA----AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA---APAAAPAAAP---AAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 568910700 1824 APATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPP 1871
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
1744-1875 1.51e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 50.52  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1744 ASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVlASASTTVSVPILTSASIPILASA- 1822
Cdd:COG3469    69 TAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVT-STTSSTAGSTTTSGASATSSAGSt 147

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568910700 1823 ---------LAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASA---ASTVPPPASTV 1875
Cdd:COG3469   148 tttttvsgtETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSAtttATTTGPPTPGL 212
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1813-1943 3.43e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.33  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1813 SASIPILASALAPATVSSPTPvvSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLP 1892
Cdd:PRK14951  369 AAEAAAPAEKKTPARPEAAAP--AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568910700 1893 PSAPSSKQPPPSIRLPSAQTSNGTDF-VAAGKSMPTSQSHGSLTAEL---WDSKV 1943
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVaSAAPAPAAAPAAARLTPTEEgdvWHATV 501
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1790-1904 4.14e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.33  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1790 PSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPL-APASAASTV 1868
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAaAPAAAPAAV 445

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 568910700 1869 PPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPS 1904
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1694-1870 1.49e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1694 PPRFAKKQATGTQQIQAPPSAPVPVS-----SSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPT 1768
Cdd:PRK12323  396 APAPAAPPAAPAAAPAAAAAARAVAAaparrSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1769 SASAPVPASTSSPVTASSSSQP-------SVPAPTPVLASASTTVSVpiltSASIPILASALAPATVSSPTPVVSATAVP 1841
Cdd:PRK12323  476 AAAAPARAAPAAAPAPADDDPPpweelppEFASPAPAQPDAAPAGWV----AESIPDPATADPDDAFETLAPAPAAAPAP 551

                         170       180
                  ....*....|....*....|....*....
gi 568910700 1842 SISTPAVPASAPTasvplAPASAASTVPP 1870
Cdd:PRK12323  552 RAAAATEPVVAPR-----PPRASASGLPD 575
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1789-1910 1.71e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1789 QPSVPAPTPVLASASTTVSVPILTSASIPilASALAPATVSSPtPVVSATAVPSISTPAVPASAPTASVPLAPASAASTV 1868
Cdd:PRK14951  373 AAPAEKKTPARPEAAAPAAAPVAQAAAAP--APAAAPAAAASA-PAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 568910700 1869 PPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSA 1910
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1764-2049 3.40e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 3.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1764 APVPTSASAPVPAStsspvtassssQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSI 1843
Cdd:PRK07003  359 EPAVTGGGAPGGGV-----------PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP 427

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1844 STPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGK 1923
Cdd:PRK07003  428 AAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1924 SMPTSQSHGSLTAELWDSKVAAPAVlndiskklgpiSPPQPPSVSAwnkPLTSFGSATSSEGTRNgqeSGVEIGIDTIQF 2003
Cdd:PRK07003  508 PDARAPAAASREDAPAAAAPPAPEA-----------RPPTPAAAAP---AARAGGAAAALDVLRN---AGMRVSSDRGAR 570

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 568910700 2004 GAPASNgnenevvPVLSEKATDKVPEPKEQRQ-KQPRAGPIKAQKLP 2049
Cdd:PRK07003  571 AAAAAK-------PAAAPAAAPKPAAPRVAVQvPTPRARAATGDAPP 610
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1752-1874 3.55e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 46.45  E-value: 3.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700  1752 VSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSP 1831
Cdd:pfam05109  473 VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTP 551

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 568910700  1832 TPVVSAtavpsiSTPAVPASAPTASVP----LAPASAASTVPPPAST 1874
Cdd:pfam05109  552 TPNATS------PTPAVTTPTPNATIPtlgkTSPTSAVTTPTPNATS 592
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 1712-1872 5.73e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.63  E-value: 5.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1712 PSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVP-VSTPAPVltscPAPVPTSASAPVPASTSSPVTASSSSQP 1790
Cdd:PRK07994  361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPpPPASAPQ----QAPAVPLPETTSQLLAARQQLQRAQGAT 436

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1791 SVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPsiSTPAVPASAPTAsvpLAPASAASTVPP 1870
Cdd:PRK07994  437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV--EVKKEPVATPKA---LKKALEHEKTPE 511


                  ..
gi 568910700 1871 PA 1872
Cdd:PRK07994  512 LA 513
PRK10856 PRK10856
cytoskeleton protein RodZ;
1789-1874 1.07e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.86  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1789 QPSVPAPTPVLASASTTVSVPILTSAsipilASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLaPASAASTV 1868
Cdd:PRK10856  172 PATTPAPAAPVDTTPTNSQTPAVATA-----PAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPL-PTDQAGVS 245


                  ....*.
gi 568910700 1869 PPPAST 1874
Cdd:PRK10856  246 TPAADP 251
PPE COG5651
PPE-repeat protein [Function unknown];
1744-1982 1.10e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.11  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1744 ASATALVPVSTPAPVLTScPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSvpiLTSASIPILASAL 1823
Cdd:COG5651   159 AAAVALTPFTQPPPTITN-PGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIG---LNSGPGNTGFAGT 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1824 APATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1903
Cdd:COG5651   235 GAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGG 314

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568910700 1904 SIRLPSAQTSNGTDFVAAGKSMPTSQSHGSLTaelwdskvAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATS 1982
Cdd:COG5651   315 AAGAAGATGAGAALGAGAAAAAAGAAAGAGAA--------AAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1694-1985 1.24e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1694 PPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPA-PVPTSASA 1772
Cdd:PHA03307   54 TVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAsPPPSPAPD 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1773 PVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSvpiltsasiPILASALAPATVSSPTPVVSATAVPSISTPAvPASA 1852
Cdd:PHA03307  134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS---------SRQAALPLSSPEETARAPSSPPAEPPPSTPP-AAAS 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1853 PTASVPLAPASAASTVPPPAST----VQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGKSmPTS 1928
Cdd:PHA03307  204 PRPPRRSSPISASASSPAPAPGrsaaDDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPS-SRP 282

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568910700 1929 QSHGSLTAELWDSKVAAPavlndiSKKLGPISPPQPPSVSAWNKPLTSFGSATSSEG 1985
Cdd:PHA03307  283 GPASSSSSPRERSPSPSP------SSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1694-1903 1.28e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1694 PPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPI--LASATALVPVSTPAPVLTSCPAPVPTSAS 1771
Cdd:PRK07003  405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKAnaRASADSRCDERDAQPPADSGSASAPASDA 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1772 APVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASAlAPATVSSPTPVVSATAVPSI-------- 1843
Cdd:PRK07003  485 PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP-TPAAAAPAARAGGAAAALDVlrnagmrv 563

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568910700 1844 ----STPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1903
Cdd:PRK07003  564 ssdrGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1755-2145 2.06e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1755 PAPVLTSCPAPVPTSASAPVPASTSSpvtassssqPSVPAPTPVLASASTTVSVPILTSA-SIPILASA--------LAP 1825
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPP---------TVPPPERPRDDPAPGRVSRPRRARRlGRAAQASSppqrprrrAAR 2689

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1826 ATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVP-PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPP-P 1903
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPaLPAAPAPPAVPAGPATPGGPARPARPPTTAGPPaP 2769

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1904 SIRLPSAQTSNGTDFVAAGKSMPTSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSS 1983
Cdd:PHA03247 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1984 EGTrngqESGVEIGIDTIQFGAPASNGnenEVVPVLSEKATDKVPEPKEQRQKQPRAGPIKAQKLPdlslvenkeHKPGP 2063
Cdd:PHA03247 2850 LPL----GGSVAPGGDVRRRPPSRSPA---AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP---------PQPQA 2913

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 2064 IGKERSLKNRKVKDAQQVEPEGQEKPSPAVVRSTDPETAKETKAVSEmSAEIGAMISVSSAEYGSDAKESVTDYTTPSSS 2143
Cdd:PHA03247 2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP-QPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992


                  ..
gi 568910700 2144 LP 2145
Cdd:PHA03247 2993 TP 2994
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1694-1872 2.97e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 2.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1694 PPRFAkkqATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAP 1773
Cdd:PRK12323  374 PATAA---AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1774 VPASTSSPVTASSSSQPSvPAPTPVLASASTTVSVPILTSASIPILASAL--APATVSSPTPVVSATAVPSISTPAVP-- 1849
Cdd:PRK12323  451 APAPAAAPAAAARPAAAG-PRPVAAAAAAAPARAAPAAAPAPADDDPPPWeeLPPEFASPAPAQPDAAPAGWVAESIPdp 529

                         170       180
                  ....*....|....*....|....*
gi 568910700 1850 --ASAPTASVPLAPASAASTVPPPA 1872
Cdd:PRK12323  530 atADPDDAFETLAPAPAAAPAPRAA 554
rne PRK10811
ribonuclease E; Reviewed
 1751-1980 4.06e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.72  E-value: 4.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1751 PVSTPAPVLTSCPAPVPTSASAPVPASTSSpvtassssqPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSS 1830
Cdd:PRK10811  862 EEVQVQPVVAEVPVAAAVEPVVSAPVVEAV---------AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVIT 932

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1831 PTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTqtqtqthkPVQSPLPPSAPSSKQPPPSIRLPSA 1910
Cdd:PRK10811  933 ESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP--------AAPVVAEVAAEVETVTAVEPEVAPA 1004

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568910700 1911 QTSNGTDFvaagksmptsqsHGSLTAELwdskVAAPAvlndiskklgPISPPQPPSVSAWNKPLTSF---GSA 1980
Cdd:PRK10811 1005 QVPEATVE------------HNHATAPM----TRAPA----------PEYVPEAPRHSDWQRPTFAFegkGAA 1051
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 1751-1872 4.20e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 4.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1751 PVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSvPAPTPVLASASTTVSVPILTSASIPILASALAPATvss 1830
Cdd:PRK07764  390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ-PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ--- 465

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 568910700 1831 PTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPA 1872
Cdd:PRK07764  466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 1743-1871 4.49e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.41  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1743 LASATALVPVSTP-----APVLTSCPAPVPTSAS--APVPAsTSSPVTASSSSQPSVpAPTPVLASASTTVSVPILTSAS 1815
Cdd:PHA03269   17 LIIANLNTNIPIPelhtsAATQKPDPAPAPHQAAsrAPDPA-VAPTSAASRKPDLAQ-APTPAASEKFDPAPAPHQAASR 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568910700 1816 IPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPP 1871
Cdd:PHA03269   95 APDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1763-1875 5.22e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 5.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1763 PAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSPTPVVSATAVPS 1842
Cdd:PRK07003  373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA-TRAEAPPAAPAPPATADRGDDAADGDAPVPA 451

                          90       100       110
                  ....*....|....*....|....*....|...
gi 568910700 1843 ISTPAVPASAPTASVPLAPASAASTVPPPASTV 1875
Cdd:PRK07003  452 KANARASADSRCDERDAQPPADSGSASAPASDA 484
rne PRK10811
ribonuclease E; Reviewed
 1700-1874 5.55e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.33  E-value: 5.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1700 KQATGTQQIQAPPSAPVPVSSSAPGLTAPAAaapaSTPAPVPILASATALVPVSTPAPVLTSCP---APVPTSASAPVPA 1776
Cdd:PRK10811  851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEP----VVSAPVVEAVAEVVEEPVVVAEPQPEEVVvveTTHPEVIAAPVTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1777 STSS-PVTASSSSQPSVPAPTPVLASASTTVSVPILTS------ASIPILASALAPATVSSPTPVVSATAVPSISTPAVP 1849
Cdd:PRK10811  927 QPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAEtaevvvAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006

                         170       180       190
                  ....*....|....*....|....*....|.
gi 568910700 1850 ASAPT----ASVPL--APASAASTVPPPAST 1874
Cdd:PRK10811 1007 PEATVehnhATAPMtrAPAPEYVPEAPRHSD 1037
PPE COG5651
PPE-repeat protein [Function unknown];
1710-1874 6.85e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 41.42  E-value: 6.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1710 APPSAPVPVS-SSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSS 1788
Cdd:COG5651   165 TPFTQPPPTItNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAAA 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1789 QPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTV 1868
Cdd:COG5651   245 AAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGA 324


                  ....*.
gi 568910700 1869 PPPAST 1874
Cdd:COG5651   325 GAALGA 330
PHA03255 PHA03255
BDLF3; Provisional
 1768-1939 6.88e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.04  E-value: 6.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1768 TSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSAsipiLASALAPATVSSPTPVVSATAVPSISTPA 1847
Cdd:PHA03255   26 SSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTA----ILSTNTTTVTSTGTTVTPVPTTSNASTIN 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1848 VPASApTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPsskqPPPSirlpSAQTSNGTDFVAAGKSMPT 1927
Cdd:PHA03255  102 VTTKV-TAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLA----PTLS----SKGTSNATKTTAELPTVPD 172

                         170
                  ....*....|...
gi 568910700 1928 SQSHGSLTA-ELW 1939
Cdd:PHA03255  173 ERQPSLSYGlPLW 185
rne PRK10811
ribonuclease E; Reviewed
 1748-1903 7.03e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.95  E-value: 7.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1748 ALVPVSTPAPVLTSCPAPVPTSASAPVPASTsspvtassssqPSVPAPTPVLASASTTVSVPILTSASIPILASALAPAT 1827
Cdd:PRK10811  861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-----------AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568910700 1828 VSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1903
Cdd:PRK10811  930 VITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1699-1837 7.45e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 7.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910700 1699 KKQATGTQQIQAPPSAPVPVSssapgltapaaaapASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPV--PA 1776
Cdd:PRK14951  365 KPAAAAEAAAPAEKKTPARPE--------------AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVaaPA 430

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568910700 1777 STSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSA 1837
Cdd:PRK14951  431 AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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