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Conserved domains on  [gi|564396982|ref|XP_006256142|]
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leukocyte-specific transcript 1 protein isoform X2 [Rattus norvegicus]

Protein Classification

LST1 domain-containing protein( domain architecture ID 10523863)

LST1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LST1 pfam05083
LST-1 protein; B144/LST1 is a gene encoded in the human major histocompatibility complex that ...
 36-100 3.04e-37

LST-1 protein; B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia.


:

Pssm-ID: 398655  Cd Length: 78  Bit Score: 120.35  E-value: 3.04e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564396982   36 FACLCRFYQRVKRLERN-AQVSGQELHYASLQKLPASSSDMEGRGEGEGVKEDASTDYACIVLNKP 100
Cdd:pfam05083  13 SACLCRLHRRVKRLERNwAQVSDQELHYASLQRLPVPSSEGPDVGEREGTKEDPSTDYACIAKNKP 78
 
Name Accession Description Interval E-value
LST1 pfam05083
LST-1 protein; B144/LST1 is a gene encoded in the human major histocompatibility complex that ...
 36-100 3.04e-37

LST-1 protein; B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia.


Pssm-ID: 398655  Cd Length: 78  Bit Score: 120.35  E-value: 3.04e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564396982   36 FACLCRFYQRVKRLERN-AQVSGQELHYASLQKLPASSSDMEGRGEGEGVKEDASTDYACIVLNKP 100
Cdd:pfam05083  13 SACLCRLHRRVKRLERNwAQVSDQELHYASLQRLPVPSSEGPDVGEREGTKEDPSTDYACIAKNKP 78
 
Name Accession Description Interval E-value
LST1 pfam05083
LST-1 protein; B144/LST1 is a gene encoded in the human major histocompatibility complex that ...
 36-100 3.04e-37

LST-1 protein; B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia.


Pssm-ID: 398655  Cd Length: 78  Bit Score: 120.35  E-value: 3.04e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564396982   36 FACLCRFYQRVKRLERN-AQVSGQELHYASLQKLPASSSDMEGRGEGEGVKEDASTDYACIVLNKP 100
Cdd:pfam05083  13 SACLCRLHRRVKRLERNwAQVSDQELHYASLQRLPVPSSEGPDVGEREGTKEDPSTDYACIAKNKP 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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