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Conserved domains on  [gi|564346130|ref|XP_006236286|]
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Golgi-associated RAB2 interactor protein 1B isoform X2 [Rattus norvegicus]

Protein Classification

FAM71 family protein( domain architecture ID 10575707)

FAM71 family protein is a DUF3699 domain-containing protein; similar to Homo sapiens proteins FAM71C, FAM71D, FAM71E1, FAM71F1 and FAM71F2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 140-208 1.03e-22

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


:

Pssm-ID: 463601  Cd Length: 71  Bit Score: 89.70  E-value: 1.03e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564346130  140 SINLKSILPLKFVELQIWDHHERILRLRTVTEKIYFLKLHP--DHPETVFRFWIRLVQILHKGLSITTKDP 208
Cdd:pfam12480   1 TLELTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCKpaDHPETLFQMWIRLLHLLRSPLSTTEKDQ 71
 
Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 140-208 1.03e-22

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463601  Cd Length: 71  Bit Score: 89.70  E-value: 1.03e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564346130  140 SINLKSILPLKFVELQIWDHHERILRLRTVTEKIYFLKLHP--DHPETVFRFWIRLVQILHKGLSITTKDP 208
Cdd:pfam12480   1 TLELTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCKpaDHPETLFQMWIRLLHLLRSPLSTTEKDQ 71
 
Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 140-208 1.03e-22

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463601  Cd Length: 71  Bit Score: 89.70  E-value: 1.03e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564346130  140 SINLKSILPLKFVELQIWDHHERILRLRTVTEKIYFLKLHP--DHPETVFRFWIRLVQILHKGLSITTKDP 208
Cdd:pfam12480   1 TLELTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCKpaDHPETLFQMWIRLLHLLRSPLSTTEKDQ 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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