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Conserved domains on  [gi|558149417|ref|XP_006120321|]
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outer dense fiber protein 2-like isoform X3 [Pelodiscus sinensis]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000095)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 205-517 3.04e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 3.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   205 QIQKKEAENDQLKAKIQEVKlsEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGK 284
Cdd:TIGR02168  671 SILERRREIEELEEKIEELE--EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   285 LTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNenkl 364
Cdd:TIGR02168  749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---- 824

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   365 iteakdlEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFL-----RKN 439
Cdd:TIGR02168  825 -------RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALallrsELE 897

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558149417   440 SLEDEKYNIEKKYEYLKRQLEKMdvqnQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVE 517
Cdd:TIGR02168  898 ELSEELRELESKRSELRRELEEL----REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 205-517 3.04e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 3.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   205 QIQKKEAENDQLKAKIQEVKlsEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGK 284
Cdd:TIGR02168  671 SILERRREIEELEEKIEELE--EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   285 LTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNenkl 364
Cdd:TIGR02168  749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---- 824

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   365 iteakdlEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFL-----RKN 439
Cdd:TIGR02168  825 -------RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALallrsELE 897

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558149417   440 SLEDEKYNIEKKYEYLKRQLEKMdvqnQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVE 517
Cdd:TIGR02168  898 ELSEELRELESKRSELRRELEEL----REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 202-512 3.55e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.95  E-value: 3.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 202 LQCQIQKKEAENDQLKAKIQEVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQdhgrnsneei 281
Cdd:COG1196  218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ---------- 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 282 cGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKV--- 358
Cdd:COG1196  288 -AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeea 366

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 359 LNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRK 438
Cdd:COG1196  367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558149417 439 NSLEdekyniEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKE 512
Cdd:COG1196  447 AAEE------EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 100-573 1.08e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 48.58  E-value: 1.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   100 SDIIKISKQEDLLIKELETLKHVKELLLHLLRTTEHKEIS---SKHIDVLMHKLTESENENDGLRKEMLITERRIVELSS 176
Cdd:pfam15921  220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIElllQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   177 RLQLEKANALKADhlsksvgavhSHLQCQIQKKEAENDQLKAKIQEVK------LSEVLSASSVWKNHYEKAVEEKTRLE 250
Cdd:pfam15921  300 QLEIIQEQARNQN----------SMYMRQLSDLESTVSQLRSELREAKrmyedkIEELEKQLVLANSELTEARTERDQFS 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   251 VQTETLKEQITKLLEDLKKIQDH---GRNSNEEICGKLTSIS-------SEKANIHLENAKLKALLTALEDNTVA-TEAE 319
Cdd:pfam15921  370 QESGNLDDQLQKLLADLHKREKElslEKEQNKRLWDRDTGNSitidhlrRELDDRNMEVQRLEALLKAMKSECQGqMERQ 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   320 LLDLQ---EEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLIT-------------EAKDLEISEVRSQMQAH 383
Cdd:pfam15921  450 MAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdltaslqekeraiEATNAEITKLRSRVDLK 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   384 LKELEHVrdlqKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKN-----SLEDEKYNIEKKYEYLKRQ 458
Cdd:pfam15921  530 LQELQHL----KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHgrtagAMQVEKAQLEKEINDRRLE 605

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   459 LEKMDVQNQELAHQLANQEESLQHTELqlkEKLAEYDALARQLEAA--LEEGRKKESEEVEKMSSKERALQTKILALETE 536
Cdd:pfam15921  606 LQEFKILKDKKDAKIRELEARVSDLEL---EKVKLVNAGSERLRAVkdIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 558149417   537 LRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSE 573
Cdd:pfam15921  683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSME 719
PTZ00121 PTZ00121
MAEBL; Provisional
 149-564 4.66e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 4.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  149 KLTESENENDGLRKEMLITERRIVELSSRLQLEKanalKADHLSKSVGAVHSHLQCQIQKKEAEN-DQLKAKIQEVKLSE 227
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK----KADEAKKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAE 1460

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  228 VLSassvwKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEicgkltsissEKANIHLENAKLKALLT 307
Cdd:PTZ00121 1461 EAK-----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA----------KKKADEAKKAEEAKKAD 1525

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  308 ALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKEL 387
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  388 EH-VRDLQKAAEERL--------QEYQENMLSYRRSYADKSKTIRELQVQIDNNNrfLRKNSLEDEKYNIEKKYEYLKRQ 458
Cdd:PTZ00121 1606 KMkAEEAKKAEEAKIkaeelkkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK--IKAAEEAKKAEEDKKKAEEAKKA 1683

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  459 LEkmdvQNQELAHQLANQEESLQHTElQLKEKLAEYDALARQLEAAlEEGRKKESEEVEKMSSKERALQTKILALETELR 538
Cdd:PTZ00121 1684 EE----DEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757

                         410       420
                  ....*....|....*....|....*.
gi 558149417  539 ERREERKRLVSKLNNSEKQQQVCLKE 564
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVIEE 1783
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 205-517 3.04e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 3.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   205 QIQKKEAENDQLKAKIQEVKlsEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGK 284
Cdd:TIGR02168  671 SILERRREIEELEEKIEELE--EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   285 LTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNenkl 364
Cdd:TIGR02168  749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---- 824

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   365 iteakdlEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFL-----RKN 439
Cdd:TIGR02168  825 -------RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALallrsELE 897

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 558149417   440 SLEDEKYNIEKKYEYLKRQLEKMdvqnQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVE 517
Cdd:TIGR02168  898 ELSEELRELESKRSELRRELEEL----REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 202-512 3.55e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.95  E-value: 3.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 202 LQCQIQKKEAENDQLKAKIQEVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQdhgrnsneei 281
Cdd:COG1196  218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ---------- 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 282 cGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKV--- 358
Cdd:COG1196  288 -AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeea 366

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 359 LNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRK 438
Cdd:COG1196  367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558149417 439 NSLEdekyniEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKE 512
Cdd:COG1196  447 AAEE------EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 207-530 1.41e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.14  E-value: 1.41e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   207 QKKEAENDQLKAKIQEVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKE-QITKLLEDLKKIQDHGRNSNEEIC--- 282
Cdd:TIGR02168  173 RRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQEELKeae 252

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   283 GKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKV---L 359
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELeskL 332

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   360 NENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIdnnnrflrkN 439
Cdd:TIGR02168  333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI---------E 403

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   440 SLEDEKYNIEKKYEYLKRQLEKMDVQNQElaHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKm 519
Cdd:TIGR02168  404 RLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA- 480

                          330
                   ....*....|.
gi 558149417   520 SSKERALQTKI 530
Cdd:TIGR02168  481 ERELAQLQARL 491
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 166-525 3.04e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.87  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 166 ITERRIVELSSRLQLEKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQEV--KLSEVLSASSVWKNHYEKAV 243
Cdd:COG1196  222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELelELEEAQAEEYELLAELARLE 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 244 EEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEicgkLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDL 323
Cdd:COG1196  302 QDIARLEERRRELEERLEELEEELAELEEELEELEEE----LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 324 QEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENklitEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQE 403
Cdd:COG1196  378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL----ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 404 YQENMLSYRRSYADKSKTIRELQVQIDNNNRFL-RKNSLEDEKYNIEKKYE-YLKRQLEKMDVQNQELAHQLANQeesLQ 481
Cdd:COG1196  454 LEEEEEALLELLAELLEEAALLEAALAELLEELaEAAARLLLLLEAEADYEgFLEGVKAALLLAGLRGLAGAVAV---LI 530

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 558149417 482 HTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERA 525
Cdd:COG1196  531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA 574
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 301-580 3.93e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.48  E-value: 3.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 301 KLKALLTALEDNTVatEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKtryEKVLNENKLITEAKDlEISEVRSQM 380
Cdd:COG1196  224 ELEAELLLLKLREL--EAELEELEAELEELEAELEELEAELAELEAELEELR---LELEELELELEEAQA-EEYELLAEL 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 381 QAHLKELEHVRDLQKAAEERLQEYQENmlsyrrsyadksktIRELQVQIDNnnrflrknsLEDEKYNIEKKYEYLKRQLE 460
Cdd:COG1196  298 ARLEQDIARLEERRRELEERLEELEEE--------------LAELEEELEE---------LEEELEELEEELEEAEEELE 354

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 461 KMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQTK--ILALETELR 538
Cdd:COG1196  355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeeLEEALAELE 434

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 558149417 539 ERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSENQTHSIQ 580
Cdd:COG1196  435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 320-588 1.09e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.06  E-value: 1.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   320 LLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlnenklitEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEE 399
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKL--------EELRLEVSELEEEIEELQKELYALANEISRLEQ 302

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   400 RLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRflRKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEE- 478
Cdd:TIGR02168  303 QKQILRERLANLERQLEELEAQLEELESKLDELAE--ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEq 380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   479 ---------SLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERAlqtKILALETELRERREERKRLVS 549
Cdd:TIGR02168  381 letlrskvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELE 457

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 558149417   550 KLNNSEKQQQVCLKELEHNLQKSENQTHSIQNYVQFLKN 588
Cdd:TIGR02168  458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 244-502 2.01e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.30  E-value: 2.01e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   244 EEKTRLEVQTETLKEQITKLLEDLKKIQ---DHGRNSNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAEL 320
Cdd:TIGR02169  674 AELQRLRERLEGLKRELSSLQSELRRIEnrlDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   321 LDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRY------EKVLNENKLITEAKDLE--ISEVRSQMQAHLKELEHVRD 392
Cdd:TIGR02169  754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsripEIQAELSKLEEEVSRIEarLREIEQKLNRLTLEKEYLEK 833

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   393 LQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKnsLEDEKYNIEKKYEYLKRQLEKMD--VQNQELA 470
Cdd:TIGR02169  834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD--LESRLGDLKKERDELEAQLRELErkIEELEAQ 911

                          250       260       270
                   ....*....|....*....|....*....|...
gi 558149417   471 HQLANQEESLQHTELQ-LKEKLAEYDALARQLE 502
Cdd:TIGR02169  912 IEKKRKRLSELKAKLEaLEEELSEIEDPKGEDE 944
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 116-481 4.49e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.14  E-value: 4.49e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   116 LETLKHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKAnalkadhlsksv 195
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA------------ 740

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   196 gavhshlqcQIQKKEAENDQLKAKIQEVKLSEVLSASSVwknhyEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDhgr 275
Cdd:TIGR02168  741 ---------EVEQLEERIAQLSKELTELEAEIEELEERL-----EEAEEELAEAEAEIEELEAQIEQLKEELKALRE--- 803

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   276 nsneeicgKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRY 355
Cdd:TIGR02168  804 --------ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   356 EKVLNenkliteakdlEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRF 435
Cdd:TIGR02168  876 EALLN-----------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 558149417   436 LRknsledEKYNIEkkYEYLKRQLEKMDVQNQELAHQLANQEESLQ 481
Cdd:TIGR02168  945 LS------EEYSLT--LEEAEALENKIEDDEEEARRRLKRLENKIK 982
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 304-527 5.54e-07

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 52.14  E-value: 5.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 304 ALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKD---LEISEVRSQM 380
Cdd:COG3883    2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDklqAEIAEAEAEI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 381 QAHLKEL-EHVRDLQKAAE-----------ERLQEYQENMLSYRRSYADKSKTIRELQVQidnnnrflrKNSLEDEKYNI 448
Cdd:COG3883   82 EERREELgERARALYRSGGsvsyldvllgsESFSDFLDRLSALSKIADADADLLEELKAD---------KAELEAKKAEL 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558149417 449 EKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQ 527
Cdd:COG3883  153 EAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 205-430 7.09e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.69  E-value: 7.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 205 QIQKKEAENDQLKAKIQEVKlsevlsassvwkNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGK 284
Cdd:COG4942   21 AAAEAEAELEQLQQEIAELE------------KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 285 LTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKL 364
Cdd:COG4942   89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558149417 365 ITEAKDlEISEVRSQMQAHLKELEhvrDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQID 430
Cdd:COG4942  169 LEAERA-ELEALLAELEEERAALE---ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 306-588 2.38e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.83  E-value: 2.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   306 LTALEDNTVATEAELLDLQEEVKQqenlAEQYKtevqKLQTEAEELK--------TRYEKVLNENKLITEAKDLEISEVR 377
Cdd:TIGR02168  188 LDRLEDILNELERQLKSLERQAEK----AERYK----ELKAELRELElallvlrlEELREELEELQEELKEAEEELEELT 259

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   378 SQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFL------------RKNSLEDEK 445
Cdd:TIGR02168  260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLeeleaqleelesKLDELAEEL 339

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   446 YNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERA 525
Cdd:TIGR02168  340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558149417   526 LQTKILALETELRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSENQTHSIQNYVQFLKN 588
Cdd:TIGR02168  420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 315-573 2.44e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 2.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 315 ATEAELL---DLQEEVKQQ-ENLAEQYKT--EVQKLQTEAEELKTryekvlnenklitEAKDLEISEVRSQMQAHLKELE 388
Cdd:COG1196  183 ATEENLErleDILGELERQlEPLERQAEKaeRYRELKEELKELEA-------------ELLLLKLRELEAELEELEAELE 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 389 HVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIdnnnrflrkNSLEDEKYNIEKKYEYLKRQLEkmdvQNQE 468
Cdd:COG1196  250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE---------YELLAELARLEQDIARLEERRR----ELEE 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 469 LAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERAL---QTKILALETELRERREERK 545
Cdd:COG1196  317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaeaEEELEELAEELLEALRAAA 396

                        250       260
                 ....*....|....*....|....*...
gi 558149417 546 RLVSKLNNSEKQQQVCLKELEHNLQKSE 573
Cdd:COG1196  397 ELAAQLEELEEAEEALLERLERLEEELE 424
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 370-518 5.26e-06

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 48.00  E-value: 5.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 370 DLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIE 449
Cdd:COG1579   16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQ 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558149417 450 KKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEK 518
Cdd:COG1579   96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 100-573 1.08e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 48.58  E-value: 1.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   100 SDIIKISKQEDLLIKELETLKHVKELLLHLLRTTEHKEIS---SKHIDVLMHKLTESENENDGLRKEMLITERRIVELSS 176
Cdd:pfam15921  220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIElllQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS 299

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   177 RLQLEKANALKADhlsksvgavhSHLQCQIQKKEAENDQLKAKIQEVK------LSEVLSASSVWKNHYEKAVEEKTRLE 250
Cdd:pfam15921  300 QLEIIQEQARNQN----------SMYMRQLSDLESTVSQLRSELREAKrmyedkIEELEKQLVLANSELTEARTERDQFS 369

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   251 VQTETLKEQITKLLEDLKKIQDH---GRNSNEEICGKLTSIS-------SEKANIHLENAKLKALLTALEDNTVA-TEAE 319
Cdd:pfam15921  370 QESGNLDDQLQKLLADLHKREKElslEKEQNKRLWDRDTGNSitidhlrRELDDRNMEVQRLEALLKAMKSECQGqMERQ 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   320 LLDLQ---EEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLIT-------------EAKDLEISEVRSQMQAH 383
Cdd:pfam15921  450 MAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdltaslqekeraiEATNAEITKLRSRVDLK 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   384 LKELEHVrdlqKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKN-----SLEDEKYNIEKKYEYLKRQ 458
Cdd:pfam15921  530 LQELQHL----KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHgrtagAMQVEKAQLEKEINDRRLE 605

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   459 LEKMDVQNQELAHQLANQEESLQHTELqlkEKLAEYDALARQLEAA--LEEGRKKESEEVEKMSSKERALQTKILALETE 536
Cdd:pfam15921  606 LQEFKILKDKKDAKIRELEARVSDLEL---EKVKLVNAGSERLRAVkdIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 558149417   537 LRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSE 573
Cdd:pfam15921  683 FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSME 719
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 163-402 1.22e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.53  E-value: 1.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   163 EMLITERRIVELSSRL-QLEKANALKADHLSKSVGAVhSHLQCQIQKKEAENDQLKAKIQEVKLsEVLSASSVWKNHYEK 241
Cdd:TIGR02169  288 EQLRVKEKIGELEAEIaSLERSIAEKERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERK-RRDKLTEEYAELKEE 365

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   242 AVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEeICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELL 321
Cdd:TIGR02169  366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   322 DLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNEnkliTEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERL 401
Cdd:TIGR02169  445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE----LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASI 520


                   .
gi 558149417   402 Q 402
Cdd:TIGR02169  521 Q 521
COG5022 COG5022
Myosin heavy chain [General function prediction only];
301-576 2.50e-05

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 47.38  E-value: 2.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  301 KLKALLTALED--NTVATEAELLDLQEEVKQQENLAEQYKtevQKLQTEAEELKTRYEKVLNENKlitEAKDLEISEVRS 378
Cdd:COG5022   798 KLQPLLSLLGSrkEYRSYLACIIKLQKTIKREKKLRETEE---VEFSLKAEVLIQKFGRSLKAKK---RFSLLKKETIYL 871

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  379 QMQAHLKElehvrdlqkaAEERLQEYQEnmlSYRRSYADKSKTIRELQVQIDNNNRFlrkNSLEDEKYNI-EKKYEYLKR 457
Cdd:COG5022   872 QSAQRVEL----------AERQLQELKI---DVKSISSLKLVNLELESEIIELKKSL---SSDLIENLEFkTELIARLKK 935

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  458 QLEKMDVQNQ-ELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMS-----SKERALQTKIL 531
Cdd:COG5022   936 LLNNIDLEEGpSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKelaelSKQYGALQEST 1015

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 558149417  532 ALETELRERREERKRLVSKLNN--SEKQQQVCLKELEHNLQKSENQT 576
Cdd:COG5022  1016 KQLKELPVEVAELQSASKIISSesTELSILKPLQKLKGLLLLENNQL 1062
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
248-518 4.46e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.45  E-value: 4.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  248 RLEVQTETLKEQITKLLEDLKKIQDHGRNSNE--EICGKLTSISSEKANI-----HLE--NAKLKAL------LTALEDN 312
Cdd:COG4913   614 ALEAELAELEEELAEAEERLEALEAELDALQErrEALQRLAEYSWDEIDVasaerEIAelEAELERLdassddLAALEEQ 693

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  313 TVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEA------KDLEISEVRSQMQAHL-K 385
Cdd:COG4913   694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAlleerfAAALGDAVERELRENLeE 773

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  386 ELEHVRDLQKAAEERLQEYqenMLSYRRSYADkskTIRELQVQIDNNNRFLRK-NSLEDEkyNIEKKYEYLKRQLEKMDV 464
Cdd:COG4913   774 RIDALRARLNRAEEELERA---MRAFNREWPA---ETADLDADLESLPEYLALlDRLEED--GLPEYEERFKELLNENSI 845

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558149417  465 QNQE-LAHQLANQEE-----------SLQHTE------LQL---KEKLAEYDALARQLEAALEEGRKKESEEVEK 518
Cdd:COG4913   846 EFVAdLLSKLRRAIReikeridplndSLKRIPfgpgryLRLearPRPDPEVREFRQELRAVTSGASLFDEELSEA 920
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 304-530 9.30e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.14  E-value: 9.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 304 ALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlneNKLITEAKDlEISEVRSQMQAH 383
Cdd:COG4942   13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL---ARRIRALEQ-ELAALEAELAEL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 384 LKELEhvrDLQKAAEERLQEYQENMlsyRRSYADKSKTIRELQVQIDNNNRFLRKNSLedekynIEKKYEYLKRQLEKMD 463
Cdd:COG4942   89 EKEIA---ELRAELEAQKEELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEELR 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149417 464 VQNQELAHQLANQEESLQhtelQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQTKI 530
Cdd:COG4942  157 ADLAELAALRAELEAERA----ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 253-530 1.06e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 45.60  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   253 TETLKEQITKLLEDLKKIQDhgrnsneeicgKLTSISSEKANIhleNAKLKALLTALEDNTVATEAELLDLQEEVKQQEN 332
Cdd:pfam12128  599 EEELRERLDKAEEALQSARE-----------KQAAAEEQLVQA---NGELEKASREETFARTALKNARLDLRRLFDEKQS 664

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   333 LA----EQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQ----KAAEERLQEY 404
Cdd:pfam12128  665 EKdkknKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQlallKAAIAARRSG 744

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   405 QENMLS-----YRRSYADKS---KTIRELQVQIDNNNRflrknSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQ 476
Cdd:pfam12128  745 AKAELKaletwYKRDLASLGvdpDVIAKLKREIRTLER-----KIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNI 819

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 558149417   477 EESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMsSKERALQTKI 530
Cdd:pfam12128  820 ERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENL-RGLRCEMSKL 872
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 325-551 1.89e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.67  E-value: 1.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   325 EEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEY 404
Cdd:TIGR02169  177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   405 QENMLSYRRSYADKSKTIRELQVQIDNNNrflrknslEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTE 484
Cdd:TIGR02169  257 TEEISELEKRLEEIEQLLEELNKKIKDLG--------EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149417   485 LQLKEKLAEYDALARQLEAALEEgRKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKL 551
Cdd:TIGR02169  329 AEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
309-527 3.35e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 3.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  309 LEDNTVATEAEllDLQEEVKQQENLAEQYKTEVQKLQT--EAEELKTRYEKvlnenkLITEAKDLEISEVRSQMQAHLKE 386
Cdd:COG4913   218 LEEPDTFEAAD--ALVEHFDDLERAHEALEDAREQIELlePIRELAERYAA------ARERLAELEYLRAALRLWFAQRR 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  387 LEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRflrkNSLEDekyniekkyeyLKRQLEKMDVQN 466
Cdd:COG4913   290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG----DRLEQ-----------LEREIERLEREL 354

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558149417  467 QELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQ 527
Cdd:COG4913   355 EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR 415
DUF3450 pfam11932
Protein of unknown function (DUF3450); This family of proteins are functionally ...
 437-507 3.46e-04

Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.


Pssm-ID: 432198 [Multi-domain]  Cd Length: 238  Bit Score: 42.60  E-value: 3.46e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558149417  437 RKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQhtelQLKEKLAEYDALARQLEAALEE 507
Cdd:pfam11932  35 KIDKWDDEKQELLAEYRALKAELESLEVYNRQLERLVASQEQEIA----SLERQIEEIERTERELVPLMLK 101
PTZ00121 PTZ00121
MAEBL; Provisional
 149-564 4.66e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 4.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  149 KLTESENENDGLRKEMLITERRIVELSSRLQLEKanalKADHLSKSVGAVHSHLQCQIQKKEAEN-DQLKAKIQEVKLSE 227
Cdd:PTZ00121 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK----KADEAKKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAE 1460

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  228 VLSassvwKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEicgkltsissEKANIHLENAKLKALLT 307
Cdd:PTZ00121 1461 EAK-----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA----------KKKADEAKKAEEAKKAD 1525

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  308 ALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKEL 387
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  388 EH-VRDLQKAAEERL--------QEYQENMLSYRRSYADKSKTIRELQVQIDNNNrfLRKNSLEDEKYNIEKKYEYLKRQ 458
Cdd:PTZ00121 1606 KMkAEEAKKAEEAKIkaeelkkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK--IKAAEEAKKAEEDKKKAEEAKKA 1683

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  459 LEkmdvQNQELAHQLANQEESLQHTElQLKEKLAEYDALARQLEAAlEEGRKKESEEVEKMSSKERALQTKILALETELR 538
Cdd:PTZ00121 1684 EE----DEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757

                         410       420
                  ....*....|....*....|....*.
gi 558149417  539 ERREERKRLVSKLNNSEKQQQVCLKE 564
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVIEE 1783
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 142-519 6.67e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.90  E-value: 6.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   142 HIDVLMHKLTESENENDGLRKEML--ITERRIVELSSRLQLEKANALKADHlsksvgavhsHLQCQIQKKEAENDQLKAK 219
Cdd:pfam12128  180 HIDKIAKAMHSKEGKFRDVKSMIVaiLEDDGVVPPKSRLNRQQVEHWIRDI----------QAIAGIMKIRPEFTKLQQE 249

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   220 IQEVKlSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEIcgkltsiSSEKANIHLEN 299
Cdd:pfam12128  250 FNTLE-SAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGEL-------SAADAAVAKDR 321

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   300 AKLkalltaledntvateaELLDLQEEVKQQENLaEQYKTEVQKL---QTEAEELKTRYEKVLNENKLITEAKDLEISEV 376
Cdd:pfam12128  322 SEL----------------EALEDQHGAFLDADI-ETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKI 384

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   377 RSQMQAHLKELE-------HVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKNSL---EDEKY 446
Cdd:pfam12128  385 KEQNNRDIAGIKdklakirEARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQAtatPELLL 464

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558149417   447 NIEKKYEYLKRQLEKMDVQNQELahqlanqeESLQHTELQLKEKLAEYDALARQLEAALEEgRKKESEEVEKM 519
Cdd:pfam12128  465 QLENFDERIERAREEQEAANAEV--------ERLQSELRQARKRRDQASEALRQASRRLEE-RQSALDELELQ 528
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
303-530 7.87e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 7.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  303 KALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKT----------------EVQKLQTEAEELKTRYEKVLNENKLIT 366
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlaeyswdeiDVASAEREIAELEAELERLDASSDDLA 688

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  367 EAKDL-------------EISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKsktiRELQVQIDNNN 433
Cdd:COG4913   689 ALEEQleeleaeleeleeELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE----RFAAALGDAVE 764

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  434 RFLRKNsLEDEKYNIEKKYEYLKRQLEK-MDVQNQELAHQLANQEESLqhtelqlkEKLAEYDALARQLEA-ALEEGRKK 511
Cdd:COG4913   765 RELREN-LEERIDALRARLNRAEEELERaMRAFNREWPAETADLDADL--------ESLPEYLALLDRLEEdGLPEYEER 835

                         250       260
                  ....*....|....*....|
gi 558149417  512 ESEEVEKMSSKERA-LQTKI 530
Cdd:COG4913   836 FKELLNENSIEFVAdLLSKL 855
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 293-531 1.12e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 41.96  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  293 ANIHLENAKLKALLTALEDNTVATEAELLD-LQ------EEVKQQENLAEQYKT---EVQKL-QTEAEELKTRYEKVLN- 360
Cdd:PRK10929   19 AATAPDEKQITQELEQAKAAKTPAQAEIVEaLQsalnwlEERKGSLERAKQYQQvidNFPKLsAELRQQLNNERDEPRSv 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  361 ENKLITEAKDLEISEVRSQMqahlkeLEHVRDLQKAaEERLQEYQENMLSY-------RRSYADKSKTIREL-------- 425
Cdd:PRK10929   99 PPNMSTDALEQEILQVSSQL------LEKSRQAQQE-QDRAREISDSLSQLpqqqteaRRQLNEIERRLQTLgtpntpla 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  426 -----QVQIDNNNRFLRKNSLEDEKYN-------IEKKYEYLKRQLEKMDVQNQELAHQLANQ-----EESLQHTEL--- 485
Cdd:PRK10929  172 qaqltALQAESAALKALVDELELAQLSannrqelARLRSELAKKRSQQLDAYLQALRNQLNSQrqreaERALESTELlae 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 558149417  486 ---QLKEKLAEYDALARQLEAALEEgrkkESEEVEKMSSKERALQTKIL 531
Cdd:PRK10929  252 qsgDLPKSIVAQFKINRELSQALNQ----QAQRMDLIASQQRQAASQTL 296
PTZ00121 PTZ00121
MAEBL; Provisional
 181-524 1.29e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  181 EKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQEVKLSEVLS-ASSVWKNHYEKAVEEKTRLEVQTETLKEQ 259
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKkADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  260 ITKLLEDLKKIQDHGRNSNEEI--CGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQY 337
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  338 KTEVQKLQTEAEELKTRYE--KVLNENKLITEAKDLEisEVRSQMQA----HLKELEHVR---DLQKAAEERLQEYQENM 408
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEakKKADEAKKAEEAKKAD--EAKKAEEAkkadEAKKAEEKKkadELKKAEELKKAEEKKKA 1566

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  409 LSYRRSYADKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLK 488
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 558149417  489 EKLA------EYDALARQLEAALEEGRKKESEEVEKMSSKER 524
Cdd:PTZ00121 1647 KKAEelkkaeEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 119-489 1.40e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 41.64  E-value: 1.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   119 LKHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDglrKEMLITERRIVELSSR--LQLEKANALK--ADHLsKS 194
Cdd:pfam15921  470 LESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKE---RAIEATNAEITKLRSRvdLKLQELQHLKneGDHL-RN 545

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   195 VGAVHSHLQCQIQKKEAENDQLKAKIQEVKLSEVLSASSVWKNHYEKAVEEKtrlEVQTETLKEQITKLLEDLKKiqdhg 274
Cdd:pfam15921  546 VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEK---EINDRRLELQEFKILKDKKD----- 617

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   275 rnsneeicGKLTSISSEKANIHLENAKLkalltaledntVATEAELLDLQEEVKQQEnlaEQYKTEVQKLQTEAEELKTR 354
Cdd:pfam15921  618 --------AKIRELEARVSDLELEKVKL-----------VNAGSERLRAVKDIKQER---DQLLNEVKTSRNELNSLSED 675

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   355 YEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQI----- 429
Cdd:pfam15921  676 YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIqflee 755

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149417   430 -----DNNNRFLR--KNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKE 489
Cdd:pfam15921  756 amtnaNKEKHFLKeeKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 312-573 2.03e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 2.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   312 NTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlnenKLITEAKDLEISEVRSQMQAHLKELEHVR 391
Cdd:TIGR02168  671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----RKELEELSRQISALRKDLARLEAEVEQLE 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   392 DLQKAAEERLQEYQENMLSYRRSYADKSKTIRELqvqidnnnrflrknslEDEKYNIEKKYEYLKRQLEKMDVQNQELAH 471
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEA----------------EAEIEELEAQIEQLKEELKALREALDELRA 810

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   472 QLANQEESLQHTELQLKEKLAEYDALARQLEAaLEEGRKKESEEVEKMSSKERALQTKIlaletelrerreerkrlvskl 551
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRLED-LEEQIEELSEDIESLAAEIEELEELI--------------------- 868

                          250       260
                   ....*....|....*....|..
gi 558149417   552 nnsEKQQqvclKELEHNLQKSE 573
Cdd:TIGR02168  869 ---EELE----SELEALLNERA 883
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
98-507 2.35e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.91  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  98 PTSDIIKISKQEDLLIKELETLKHVKELLLHLLRTTEHKEISSKHIDVLMHKLT--ESENENDGLRKEMLITERRIVELS 175
Cdd:COG4717   66 PELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEklEKLLQLLPLYQELEALEAELAELP 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 176 SRLQLEKANALKADHLSKSVgavhSHLQCQIQKKEAENDQLKAKIQEVKLSEVLSAssvwKNHYEKAVEEKTRLEVQTET 255
Cdd:COG4717  146 ERLEELEERLEELRELEEEL----EELEAELAELQEELEELLEQLSLATEEELQDL----AEELEELQQRLAELEEELEE 217

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 256 LKEQITKLLEDLKKIQDHGRNSNEE---------------ICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAEL 320
Cdd:COG4717  218 AQEELEELEEELEQLENELEAAALEerlkearlllliaaaLLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREK 297

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 321 LDLQEEVKQQENLAEQYKTEVQKLQTEAEEL----KTRYEKVLNENKLITEAKDL--EISEVRSQMQAHLKELEHVRDLQ 394
Cdd:COG4717  298 ASLGKEAEELQALPALEELEEEELEELLAALglppDLSPEELLELLDRIEELQELlrEAEELEEELQLEELEQEIAALLA 377

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 395 KAAEERLQEYQENMLSYRRsYADKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLA 474
Cdd:COG4717  378 EAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456

                        410       420       430
                 ....*....|....*....|....*....|....*
gi 558149417 475 NQEESLQHTELQ--LKEKLAEYDALARQLEAALEE 507
Cdd:COG4717  457 ELEAELEQLEEDgeLAELLQELEELKAELRELAEE 491
COG5022 COG5022
Myosin heavy chain [General function prediction only];
204-502 2.57e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 40.83  E-value: 2.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  204 CQIQKKEAENDQLKAKIQEVKLSEVLSASSVWKNHYEKAVEEKTRLEVQT--ETLKEQITKLLEDLKKIqDHGRNSNEEI 281
Cdd:COG5022   826 IKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQrvELAERQLQELKIDVKSI-SSLKLVNLEL 904

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  282 CGKLTSISSEKANIHLENAKLK-ALLTALEDNT------------VATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEA 348
Cdd:COG5022   905 ESEIIELKKSLSSDLIENLEFKtELIARLKKLLnnidleegpsieYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILV 984

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  349 EELKTRYEKVLNENKLITeakdlEISEVRSQMQAHLKELEHVRdlqkaaeERLQEYQENMLSYRRSYADKSktirelqvq 428
Cdd:COG5022   985 REGNKANSELKNFKKELA-----ELSKQYGALQESTKQLKELP-------VEVAELQSASKIISSESTELS--------- 1043

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558149417  429 idnnnrflRKNSLEDEKYNIEKKYEYLKRQLEKMDVQNqELAHQLANQEESLQHTELQLKE-KLAEYDALARQLE 502
Cdd:COG5022  1044 --------ILKPLQKLKGLLLLENNQLQARYKALKLRR-ENSLLDDKQLYQLESTENLLKTiNVKDLEVTNRNLV 1109
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
349-560 2.94e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.52  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 349 EELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQkaaeERLQEYQENMLSYRRSYADKSKTIRELQVQ 428
Cdd:COG4717   49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQ----EELEELEEELEELEAELEELREELEKLEKL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 429 IDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLEkmdvqnqelahQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEG 508
Cdd:COG4717  125 LQLLPLYQELEALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQEELEELLEQLSLATEEE 193

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 558149417 509 RKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEKQQQV 560
Cdd:COG4717  194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
360-519 3.22e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 3.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  360 NENKLitEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQ--ENMLSYRRSYADKSKTIRELQVQIDNnnrfLR 437
Cdd:COG4913   608 NRAKL--AALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELER----LD 681

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  438 KNSLEDEKyniekkyeyLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVE 517
Cdd:COG4913   682 ASSDDLAA---------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752


                  ..
gi 558149417  518 KM 519
Cdd:COG4913   753 ER 754
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 361-581 3.49e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.31  E-value: 3.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 361 ENKL-ITEAKDLEISEVRSQMQAHLKELEhvRDLQKAAE-----ERLQEYQENMLSYRrsYADKSKTIRELQVQIDNNNR 434
Cdd:COG1196  178 ERKLeATEENLERLEDILGELERQLEPLE--RQAEKAERyrelkEELKELEAELLLLK--LRELEAELEELEAELEELEA 253

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417 435 flRKNSLEDEKYNIEKKYEYLKRQLEKMDVQ-------NQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAaLEE 507
Cdd:COG1196  254 --ELEELEAELAELEAELEELRLELEELELEleeaqaeEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-LEE 330

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558149417 508 GRKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSENQTHSIQN 581
Cdd:COG1196  331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 160-590 3.51e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 40.42  E-value: 3.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   160 LRKEMLITERRIVELSSRLQLEKANalkadhlsksvgavHSHLQCQIQKKEAENDQLKAKIQEVKLSEVLSAS-SVWKNH 238
Cdd:TIGR00606  582 KSKEINQTRDRLAKLNKELASLEQN--------------KNHINNELESKEEQLSSYEDKLFDVCGSQDEESDlERLKEE 647

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   239 YEKAVEEKTRLEVQTETLKEQITKLLEDlkkiqdhgrnsNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEA 318
Cdd:TIGR00606  648 IEKSSKQRAMLAGATAVYSQFITQLTDE-----------NQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTES 716

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   319 ELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlneNKLITEAKDlEISEVRSQMQAHLKELEHVRDLQK--A 396
Cdd:TIGR00606  717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV---NRDIQRLKN-DIEEQETLLGTIMPEEESAKVCLTdvT 792

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   397 AEERLQEYQEnmlsyrrsyaDKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLE---KMDVQNQELAHQL 473
Cdd:TIGR00606  793 IMERFQMELK----------DVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIElnrKLIQDQQEQIQHL 862

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   474 ANQEESLQHTELQLKEKLAEYDALARQLEaaleegrkKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNN 553
Cdd:TIGR00606  863 KSKTNELKSEKLQIGTNLQRRQQFEEQLV--------ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934

                          410       420       430
                   ....*....|....*....|....*....|....*..
gi 558149417   554 SEKQQQVCLKELEHNLQKSENQTHSIQNYVQFLKNSY 590
Cdd:TIGR00606  935 SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971
PTZ00121 PTZ00121
MAEBL; Provisional
 166-532 3.53e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.51  E-value: 3.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  166 ITERRIVELSSRLQLEKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQEVKLSEVLSASSVWKNHYEKAVEE 245
Cdd:PTZ00121 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  246 KTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGK--LTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDL 323
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  324 QEEVKQQenlAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEvrsQMQAHLKELEHVRDLQKAAEERLQE 403
Cdd:PTZ00121 1386 KAEEKKK---ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD---EAKKKAEEAKKADEAKKKAEEAKKA 1459

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  404 YQENMLSYRRSYADKSKTIRELQVQIDNnnrfLRKNSLEDEKYNIE--KKYEYLKRQLEKMDVQNQELAHQLANQEESLQ 481
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADE----AKKKAEEAKKKADEakKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 558149417  482 HTELQLKEKLAEYDALARQLEAaleegrkKESEEVEKMSSKERALQTKILA 532
Cdd:PTZ00121 1536 ADEAKKAEEKKKADELKKAEEL-------KKAEEKKKAEEAKKAEEDKNMA 1579
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 7-555 5.50e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 39.72  E-value: 5.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417     7 KQNWSSCMKVMDKHQTELNKLSPQLKS-RSQKNFLQqnlceSEMRRLKEDALNENVTFQEKLLEAQMAVNSTEmflplfk 85
Cdd:pfam15921  263 QQHQDRIEQLISEHEVEITGLTEKASSaRSQANSIQ-----SQLEIIQEQARNQNSMYMRQLSDLESTVSQLR------- 330

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417    86 vtiaamtnvcnlptSDIIKISKQEDLLIKELEtlkhvKELLLHLLRTTEHKEISSKHIDvlmhkltESENENDGLRKEML 165
Cdd:pfam15921  331 --------------SELREAKRMYEDKIEELE-----KQLVLANSELTEARTERDQFSQ-------ESGNLDDQLQKLLA 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   166 ITERRIVELSSRLQLEK-------ANALKADHLSKSVgavhSHLQCQIQKKEAENDQLKAKIQevKLSEVLSASSVWKNh 238
Cdd:pfam15921  385 DLHKREKELSLEKEQNKrlwdrdtGNSITIDHLRREL----DDRNMEVQRLEALLKAMKSECQ--GQMERQMAAIQGKN- 457

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   239 yeKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGKLTSISSEKANIHLENAKLKALLTALEDN------ 312
Cdd:pfam15921  458 --ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKlqelqh 535

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   313 ---------TVATEAELLDLQ--------EEVKQQ-ENLAEQY--------KTEVQKLQTEAEELKTRYEkvLNENKLIT 366
Cdd:pfam15921  536 lknegdhlrNVQTECEALKLQmaekdkviEILRQQiENMTQLVgqhgrtagAMQVEKAQLEKEINDRRLE--LQEFKILK 613

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   367 EAKDLEISEVRSQMQAhlKELEHVRdLQKAAEERLQEYQEnMLSYRRSYADKSKTIRELQVQIDNNNRFLRKNsLEDEKY 446
Cdd:pfam15921  614 DKKDAKIRELEARVSD--LELEKVK-LVNAGSERLRAVKD-IKQERDQLLNEVKTSRNELNSLSEDYEVLKRN-FRNKSE 688

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417   447 NIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHT-------ELQLKEKLAEYDALARQ---LEAALEEGRKKE---S 513
Cdd:pfam15921  689 EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAmkvamgmQKQITAKRGQIDALQSKiqfLEEAMTNANKEKhflK 768

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|..
gi 558149417   514 EEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSE 555
Cdd:pfam15921  769 EEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
mukB PRK04863
chromosome partition protein MukB;
151-530 5.62e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 39.94  E-value: 5.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  151 TESENENDGLRKEMLITERRIVELSSRLQ--------LEKANALKADHLSKSVGAVHshLQCQIQKKEAENDQLkakiqE 222
Cdd:PRK04863  289 LELRRELYTSRRQLAAEQYRLVEMARELAelneaesdLEQDYQAASDHLNLVQTALR--QQEKIERYQADLEEL-----E 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  223 VKLSEVLSASsvwknhyEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQD-----HGRnsneeicgkltSISSEKANIHL 297
Cdd:PRK04863  362 ERLEEQNEVV-------EEADEQQEENEARAEAAEEEVDELKSQLADYQQaldvqQTR-----------AIQYQQAVQAL 423

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  298 ENAKLKALLTALE-DNTVATEAELLDLQEEVKQQENLAEQyktevqKLQTeAEELKTRYEKVLNENKLIT------EAKD 370
Cdd:PRK04863  424 ERAKQLCGLPDLTaDNAEDWLEEFQAKEQEATEELLSLEQ------KLSV-AQAAHSQFEQAYQLVRKIAgevsrsEAWD 496

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  371 LEISEVR------------SQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDnnnrflrk 438
Cdd:PRK04863  497 VARELLRrlreqrhlaeqlQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLE-------- 568

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149417  439 nSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAhQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKE---SEE 515
Cdd:PRK04863  569 -SLSESVSEARERRMALRQQLEQLQARIQRLA-ARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERErelTVE 646

                         410
                  ....*....|....*
gi 558149417  516 VEKMSSKERALQTKI 530
Cdd:PRK04863  647 RDELAARKQALDEEI 661
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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