|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
205-543 |
8.62e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 8.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 205 QIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATR---AQKQRAEHFEASVENLTSKIR 281
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRqisALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 282 KREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDhgrnsneeicgKLTSISSEKANIHLEN 361
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE-----------ALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 362 AKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNenkliteakdlEISEVRSQ 441
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN-----------ERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 442 MQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRknsledEKYNIEkkYEYLKRQL 521
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS------EEYSLT--LEEAEALE 960
|
330 340
....*....|....*....|..
gi 558149408 522 EKMDVQNQELAHQLANQEESLQ 543
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
256-574 |
1.49e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 256 KKATRAQKQRAEHFEASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQdh 335
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ-- 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 336 grnsneeicGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKT 415
Cdd:COG1196 288 ---------AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 416 RYEKV---LNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQID 492
Cdd:COG1196 359 ELAEAeeaLLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 493 NNNRFLRKNSLEdekyniEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRK 572
Cdd:COG1196 439 EEEEALEEAAEE------EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
..
gi 558149408 573 KE 574
Cdd:COG1196 513 AL 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
261-579 |
2.25e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 261 AQKQRAEHFEASVENLTSKIRKREVKLSEvlsassvwknhYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSN 340
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAE-----------LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 341 EEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKV 420
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 421 LNenkliteakdlEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFL-- 498
Cdd:TIGR02168 823 RE-----------RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALal 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 499 ---RKNSLEDEKYNIEKKYEYLKRQLEKMdvqnQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKES 575
Cdd:TIGR02168 892 lrsELEELSEELRELESKRSELRRELEEL----REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
....
gi 558149408 576 EEVE 579
Cdd:TIGR02168 968 EEAR 971
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
113-435 |
1.90e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 113 IKELETLKHVKELLLHLLRTTEHKEISSKHID-------VLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKANA 185
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEeleaeleELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 186 LKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQKQR 265
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 266 AEHFEASVENLTSKIRKREVKLSEVLSAssvwKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDhgrnsneeicg 345
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEEL----EEAEEALLERLERLEEELEELEEALAELEEEEEEEEE----------- 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 346 KLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEvkQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENK 425
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE--LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330
....*....|
gi 558149408 426 LITEAKDLEI 435
Cdd:COG1196 521 GLAGAVAVLI 530
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-468 |
2.92e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 2.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 166 ITERRIVELSSRLQLEKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEwklqIGENKHQILAVK 245
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE----AQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 246 ETNEQRKKALKKATRAQKQRAEHFEASVENLTSKIRKREVKLSEVLsassvwknhyEKAVEEKTRLEVQTETLKEQITKL 325
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE----------EELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 326 LEDLKKIQDHGRNSNEEIcGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQK 405
Cdd:COG1196 368 LEAEAELAEAEEELEELA-EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558149408 406 LQTEAEELKTRyEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQE 468
Cdd:COG1196 447 AAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
173-476 |
5.54e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 5.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 173 ELSSRLQLEKANALKADHlsKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIgenkhqilavkETNEQRK 252
Cdd:COG1196 217 ELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-----------EELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 253 KALKKATRAQKQRAEHFEASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKI 332
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 333 QDHGRNSNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEE 412
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 558149408 413 LKTRYEKVLNENKLITEAKD--LEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRS 476
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLEllAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
249-592 |
6.34e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 249 EQRKKALKKATRAQKQRAEhfeasVENLTSKIRKREVKLSevLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLED 328
Cdd:TIGR02168 172 ERRKETERKLERTRENLDR-----LEDILNELERQLKSLE--RQAEKAERYKELKAELRELELALLVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 329 LKKIQDHGRnsneeicgKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQT 408
Cdd:TIGR02168 245 QEELKEAEE--------ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 409 EAEELKTRYEKV---LNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIR 485
Cdd:TIGR02168 317 QLEELEAQLEELeskLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 486 ELQVQIdnnnrflrkNSLEDEKYNIEKKYEYLKRQLEKMDVQNQElaHQLANQEESLQHTELQLKEKLAEYDALARQLEA 565
Cdd:TIGR02168 397 SLNNEI---------ERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEE 465
|
330 340
....*....|....*....|....*..
gi 558149408 566 ALEEGRKKESEEVEKmSSKERALQTKI 592
Cdd:TIGR02168 466 LREELEEAEQALDAA-ERELAQLQARL 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
363-642 |
7.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 7.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 363 KLKALLTALEDNTVatEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKtryEKVLNENKLITEAKDlEISEVRSQM 442
Cdd:COG1196 224 ELEAELLLLKLREL--EAELEELEAELEELEAELEELEAELAELEAELEELR---LELEELELELEEAQA-EEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 443 QAHLKELEHVRDLQKAAEERLQEYQENmlsyrrsyadksktIRELQVQIDNnnrflrknsLEDEKYNIEKKYEYLKRQLE 522
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEE--------------LAELEEELEE---------LEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 523 KMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQTK--ILALETELR 600
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeeLEEALAELE 434
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 558149408 601 ERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSENQTHSIQ 642
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
382-650 |
2.08e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 382 LLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlnenklitEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEE 461
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKL--------EELRLEVSELEEEIEELQKELYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 462 RLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRflRKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEE- 540
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAE--ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEq 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 541 ---------SLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERAlqtKILALETELRERREERKRLVS 611
Cdd:TIGR02168 381 letlrskvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELE 457
|
250 260 270
....*....|....*....|....*....|....*....
gi 558149408 612 KLNNSEKQQQVCLKELEHNLQKSENQTHSIQNYVQFLKN 650
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
116-468 |
2.57e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 116 LETLKHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKANALKadhlsksv 195
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ-------- 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 196 gavhshLQCQIQKKEAENDQLKAKIQTLEKKIIEwklqIGENKHQILAVKETNEQRKKALKKATRAQKQRAEHFEASVEN 275
Cdd:TIGR02168 745 ------LEERIAQLSKELTELEAEIEELEERLEE----AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 276 LTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDhgrnsneeicgKLTSISSEKA 355
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-----------ELEALLNERA 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 356 NIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTR----YEKVLNENKLITEAK 431
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKI 963
|
330 340 350
....*....|....*....|....*....|....*..
gi 558149408 432 DLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQE 468
Cdd:TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
306-564 |
3.86e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 306 EEKTRLEVQTETLKEQITKLLEDLKKIQ---DHGRNSNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAEL 382
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIEnrlDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 383 LDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRY------EKVLNENKLITEAKDLE--ISEVRSQMQAHLKELEHVRD 454
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsripEIQAELSKLEEEVSRIEarLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 455 LQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKnsLEDEKYNIEKKYEYLKRQLEKMD--VQNQELA 532
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD--LESRLGDLKKERDELEAQLRELErkIEELEAQ 911
|
250 260 270
....*....|....*....|....*....|...
gi 558149408 533 HQLANQEESLQHTELQ-LKEKLAEYDALARQLE 564
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEaLEEELSEIEDPKGEDE 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
185-643 |
6.30e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 6.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 185 ALKADHLSKSvgAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQKQ 264
Cdd:PTZ00121 1314 AKKADEAKKK--AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 265 RAEHFEASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEIC 344
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 345 GKLTSISSEKANiHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNEN 424
Cdd:PTZ00121 1472 ADEAKKKAEEAK-KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 425 klITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELqvqidnnnrfLRKNSLE 504
Cdd:PTZ00121 1551 --LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE----------AKKAEEA 1618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 505 DEKYNIEKKYEYLKRQLEKMDVQNQE---LAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKM 581
Cdd:PTZ00121 1619 KIKAEELKKAEEEKKKVEQLKKKEAEekkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558149408 582 SSKERALQTKILALETELRERREERKRLVSKLNNSE-KQQQVCLKELEHNLQKSENQTHSIQN 643
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEaKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
102-464 |
7.71e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 7.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 102 IIKISKQEDLLIKELETLKHVKELLLHLlRTTEHKEISSKhIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQle 181
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEK-REYEGYELLKE-KEALERQKEAIERQLASLEEELEKLTEEISELEKRLE-- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 182 kANALKADHLSKSVGAVHSHLQCQIQKKEAEndqLKAKIQTLEKKIIEWKLQI--GENKHQILAVKETNEQRKK-ALKKA 258
Cdd:TIGR02169 269 -EIEQLLEELNKKIKDLGEEEQLRVKEKIGE---LEAEIASLERSIAEKERELedAEERLAKLEAEIDKLLAEIeELERE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 259 TRAQKQRAEHFEASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIqdhgrn 338
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL------ 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 339 sneeicgkltsiSSEKANIHLENAKLKALLTALEdntvateAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYE 418
Cdd:TIGR02169 419 ------------SEELADLNAAIAGIEAKINELE-------EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 558149408 419 KVLNEnkliTEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQ 464
Cdd:TIGR02169 480 RVEKE----LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
366-589 |
1.07e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 366 ALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKD---LEISEVRSQM 442
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDklqAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 443 QAHLKEL-EHVRDLQKAAE-----------ERLQEYQENMLSYRRSYADKSKTIRELQVQidnnnrflrKNSLEDEKYNI 510
Cdd:COG3883 82 EERREELgERARALYRSGGsvsyldvllgsESFSDFLDRLSALSKIADADADLLEELKAD---------KAELEAKKAEL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558149408 511 EKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQ 589
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
7-551 |
2.98e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 7 KQNWSSCMKVMDKHQTELNKLSPQLKS-RSQKNFLQqnlceSEMRRLKEDALNENVTFQEKLLEAQMAVNSTEMFL---- 81
Cdd:pfam15921 263 QQHQDRIEQLISEHEVEITGLTEKASSaRSQANSIQ-----SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELreak 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 82 PLFKVTIAAMTNVCNLPTSDIIKISKQEDLLIKELETL-KHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGL 160
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLdDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 161 RKEMLITERRIVELSSRLQLEKANAlkadhlsksvgavHSHLQCQIQKKEAENDQLKaKIQTLEKKIIEWKLQIGENKHQ 240
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSEC-------------QGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 241 ILAVKETNEQRKKALKKATRAQKQRAEHFEASVENLTSKIRKREVKLSEvLSASSVWKNHYEKAVEEKTRLEVQT----- 315
Cdd:pfam15921 484 LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE-LQHLKNEGDHLRNVQTECEALKLQMaekdk 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 316 --ETLKEQITKLLEdlkKIQDHGRNSNEEICGKlTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEE----- 388
Cdd:pfam15921 563 viEILRQQIENMTQ---LVGQHGRTAGAMQVEK-AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEkvklv 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 389 ---------VKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAA 459
Cdd:pfam15921 639 nagserlraVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 460 EERLQEYQENMLSYRRSYADKSKTIRELQVQI----------DNNNRFLR--KNSLEDEKYNIEKKYEYLKRQLEKMDVQ 527
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQITAKRGQIDALQSKIqfleeamtnaNKEKHFLKeeKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
570 580
....*....|....*....|....
gi 558149408 528 NQELAHQLANQEESLQHTELQLKE 551
Cdd:pfam15921 799 ERRLKEKVANMEVALDKASLQFAE 822
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
368-650 |
3.81e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 3.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 368 LTALEDNTVATEAELLDLQEEVKQqenlAEQYKtevqKLQTEAEELK--------TRYEKVLNENKLITEAKDLEISEVR 439
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEK----AERYK----ELKAELRELElallvlrlEELREELEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 440 SQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFL------------RKNSLEDEK 507
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLeeleaqleelesKLDELAEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 508 YNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERA 587
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL 419
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558149408 588 LQTKILALETELRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSENQTHSIQNYVQFLKN 650
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
377-635 |
4.45e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 377 ATEAELL---DLQEEVKQQ-ENLAEQYKT--EVQKLQTEAEELKTryekvlnenklitEAKDLEISEVRSQMQAHLKELE 450
Cdd:COG1196 183 ATEENLErleDILGELERQlEPLERQAEKaeRYRELKEELKELEA-------------ELLLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 451 HVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIdnnnrflrkNSLEDEKYNIEKKYEYLKRQLEkmdvQNQE 530
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE---------YELLAELARLEQDIARLEERRR----ELEE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 531 LAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERAL---QTKILALETELRERREERK 607
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELaeaEEELEELAEELLEALRAAA 396
|
250 260
....*....|....*....|....*...
gi 558149408 608 RLVSKLNNSEKQQQVCLKELEHNLQKSE 635
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELE 424
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-492 |
4.71e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 277 TSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEICGKLTSISSEKAN 356
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 357 IHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDlEIS 436
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA-ELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 558149408 437 EVRSQMQAHLKELEhvrDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQID 492
Cdd:COG4942 178 ALLAELEEERAALE---ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
187-626 |
6.05e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 6.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 187 KADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKiqtlEKKIIEWKLQIGENKHQILAVKETNEQRKKA--LKKATRAQKQ 264
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA----EEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdeAKKKAEEDKK 1405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 265 RAEHFEASVENlTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEIC 344
Cdd:PTZ00121 1406 KADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 345 GKLTSISSEKANIHLENAKLKALLTALEDNTVATE----AELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYE-K 419
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEeakkADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEkK 1564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 420 VLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDL------QKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDN 493
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLyeeekkMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 494 NNRFLRKNSLEDEKYNIEKKYEYLK--------RQLEKMDVQNQELAHQLANQEESLQHTElQLKEKLAEYDALARQLEA 565
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKaeedkkkaEEAKKAEEDEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKK 1723
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558149408 566 AlEEGRKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEKQQQVCLKE 626
Cdd:PTZ00121 1724 A-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
432-580 |
1.03e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 432 DLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIE 511
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558149408 512 KKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEK 580
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
105-425 |
1.23e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 105 ISKQEDLLIKELETLKH-VKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKA 183
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKErLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 184 NALKADHlsKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQK 263
Cdd:TIGR02169 801 SKLEEEV--SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 264 QraehFEASVENLTSKIRKREVKLSEVlsassvwKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRnSNEEI 343
Cdd:TIGR02169 879 D----LESRLGDLKKERDELEAQLREL-------ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG-EDEEI 946
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 344 CGKLTSISSEKANIHlenaKLKALLTALED-NTVATEaellDLQEEVKQQENLAEQYktevQKLQTEAEELKTRYEKVLN 422
Cdd:TIGR02169 947 PEEELSLEDVQAELQ----RVEEEIRALEPvNMLAIQ----EYEEVLKRLDELKEKR----AKLEEERKAILERIEEYEK 1014
|
...
gi 558149408 423 ENK 425
Cdd:TIGR02169 1015 KKR 1017
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
363-638 |
3.33e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.38 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 363 KLKALLTALED--NTVATEAELLDLQEEVKQQENLAEQYKtevQKLQTEAEELKTRYEKVLNENKlitEAKDLEISEVRS 440
Cdd:COG5022 798 KLQPLLSLLGSrkEYRSYLACIIKLQKTIKREKKLRETEE---VEFSLKAEVLIQKFGRSLKAKK---RFSLLKKETIYL 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 441 QMQAHLKElehvrdlqkaAEERLQEYQEnmlSYRRSYADKSKTIRELQVQIDNNNRFlrkNSLEDEKYNI-EKKYEYLKR 519
Cdd:COG5022 872 QSAQRVEL----------AERQLQELKI---DVKSISSLKLVNLELESEIIELKKSL---SSDLIENLEFkTELIARLKK 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 520 QLEKMDVQNQ-ELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMS-----SKERALQTKIL 593
Cdd:COG5022 936 LLNNIDLEEGpSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKelaelSKQYGALQEST 1015
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 558149408 594 ALETELRERREERKRLVSKLNN--SEKQQQVCLKELEHNLQKSENQT 638
Cdd:COG5022 1016 KQLKELPVEVAELQSASKIISSesTELSILKPLQKLKGLLLLENNQL 1062
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
269-635 |
4.90e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 269 FEASVENLTSKIRKR----EVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDH---GRNSNE 341
Cdd:pfam15921 322 LESTVSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKElslEKEQNK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 342 EICGKLTSIS-------SEKANIHLENAKLKALLTALEDNTVAT-EAELLDLQ---EEVKQQENLAEQYKTEVQKLQTEA 410
Cdd:pfam15921 402 RLWDRDTGNSitidhlrRELDDRNMEVQRLEALLKAMKSECQGQmERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVV 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 411 EELKTRYEKVLNENKLIT-------------EAKDLEISEVRSQMQAHLKELEHVrdlqKAAEERLQEYQENMLSYRRSY 477
Cdd:pfam15921 482 EELTAKKMTLESSERTVSdltaslqekeraiEATNAEITKLRSRVDLKLQELQHL----KNEGDHLRNVQTECEALKLQM 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 478 ADKSKTIRELQVQIDNNNRFLRKN-----SLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELqlkEK 552
Cdd:pfam15921 558 AEKDKVIEILRQQIENMTQLVGQHgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL---EK 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 553 LAEYDALARQLEAA--LEEGRKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEKQQQVCLKELEHN 630
Cdd:pfam15921 635 VKLVNAGSERLRAVkdIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT 714
|
....*
gi 558149408 631 LQKSE 635
Cdd:pfam15921 715 LKSME 719
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
202-432 |
5.05e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 202 LQCQIQKKEAENDQLKAKIQTLEKKI----------------IEWKLQIGENKHQIL--------AVKETNEQRKKALKK 257
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIeelqkelyalaneisrLEQQKQILRERLANLerqleeleAQLEELESKLDELAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 258 ATRAQKQRAEHFEASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGR 337
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 338 NSNEEICGKLTSISS-EKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTR 416
Cdd:TIGR02168 418 RLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
250
....*....|....*.
gi 558149408 417 YEKVLNENKLITEAKD 432
Cdd:TIGR02168 498 QENLEGFSEGVKALLK 513
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
362-592 |
5.26e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 362 AKLKAL---LTALEDNTVATEAELLDLQEEVKQQENLAEQYKT---------EVQKLQTEAEELKTRYEKVLNENKLITE 429
Cdd:COG4913 610 AKLAALeaeLAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 430 AKDL-------------EISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKsktiRELQVQIDNNNR 496
Cdd:COG4913 690 LEEQleeleaeleeleeELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE----RFAAALGDAVER 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 497 FLRKNsLEDEKYNIEKKYEYLKRQLEK-MDVQNQELAHQLANQEESLqhtelqlkEKLAEYDALARQLEA-ALEEGRKKE 574
Cdd:COG4913 766 ELREN-LEERIDALRARLNRAEEELERaMRAFNREWPAETADLDADL--------ESLPEYLALLDRLEEdGLPEYEERF 836
|
250
....*....|....*....
gi 558149408 575 SEEVEKMSSKERA-LQTKI 592
Cdd:COG4913 837 KELLNENSIEFVAdLLSKL 855
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
205-423 |
5.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 205 QIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKE---TNEQRKKALKKATRAQKQRAEHFEASVENLTSKIR 281
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 282 KREVKLSEVLSASsvwknhYEKAVEEKTRLEVQTETLkEQITKLLEDLKKIQDHGRNSNEEICGKLTSISSEKANIHLEN 361
Cdd:COG4942 101 AQKEELAELLRAL------YRLGRQPPLALLLSPEDF-LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 558149408 362 AKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNE 423
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
310-580 |
8.06e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 8.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 310 RLEVQTETLKEQITKLLEDLKKIQDHGRNSNE--EICGKLTSISSEKANI-----HLE--NAKLKAL------LTALEDN 374
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQErrEALQRLAEYSWDEIDVasaerEIAelEAELERLdassddLAALEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 375 TVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEA------KDLEISEVRSQMQAHL-K 447
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAlleerfAAALGDAVERELRENLeE 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 448 ELEHVRDLQKAAEERLQEYqenMLSYRRSYADkskTIRELQVQIDNNNRFLRK-NSLEDEkyNIEKKYEYLKRQLEKMDV 526
Cdd:COG4913 774 RIDALRARLNRAEEELERA---MRAFNREWPA---ETADLDADLESLPEYLALlDRLEED--GLPEYEERFKELLNENSI 845
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 558149408 527 QNQE-LAHQLANQEE-----------SLQHTE------LQL---KEKLAEYDALARQLEAALEEGRKKESEEVEK 580
Cdd:COG4913 846 EFVAdLLSKLRRAIReikeridplndSLKRIPfgpgryLRLearPRPDPEVREFRQELRAVTSGASLFDEELSEA 920
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
108-588 |
1.28e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 108 QEDLLIKELE-TLKHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKANAL 186
Cdd:COG1196 219 KEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 187 KADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQKQRA 266
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 267 EHFEASVENLTSKIRKREVKLSEVLSAssvwKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNE---EI 343
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEEL----EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEeeaEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 344 CGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQ---------------- 407
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGlrglagavavligvea 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 408 ------------------TEAEELKTRYEKVLNENKL-------ITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEER 462
Cdd:COG1196 535 ayeaaleaalaaalqnivVEDDEVAAAAIEYLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 463 LQEYQENMLSYRRSYADK--------------------------SKTIRELQVQIDNNNRFLRKNSLEDEKYNIEKKYEY 516
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLeaalrravtlagrlrevtlegeggsaGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 517 LKRQLEKMDVQNQELAHQ-------------LANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSS 583
Cdd:COG1196 695 LEEALLAEEEEERELAEAeeerleeeleeeaLEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
....*
gi 558149408 584 KERAL 588
Cdd:COG1196 775 EIEAL 779
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
315-592 |
1.67e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 315 TETLKEQITKLLEDLKKIQDHGRNSNEEICgkltsisseKANIHLENAKLKalltaLEDNTVATEAELLDLQEEVKQQEN 394
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQLV---------QANGELEKASRE-----ETFARTALKNARLDLRRLFDEKQS 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 395 LA----EQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQ----KAAEERLQEY 466
Cdd:pfam12128 665 EKdkknKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQlallKAAIAARRSG 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 467 QENMLS-----YRRSYADKS---KTIRELQVQIDNNNRflrknSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQ 538
Cdd:pfam12128 745 AKAELKaletwYKRDLASLGvdpDVIAKLKREIRTLER-----KIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNI 819
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 558149408 539 EESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMsSKERALQTKI 592
Cdd:pfam12128 820 ERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENL-RGLRCEMSKL 872
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
101-594 |
1.78e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 101 DIIKISKQEDLLIKELETL-KHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQ 179
Cdd:COG1196 247 ELEELEAELEELEAELAELeAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 180 LEKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKAT 259
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 260 RAQKQRAEHfeasVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNS 339
Cdd:COG1196 407 EAEEALLER----LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 340 NEEicgkltsissEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEK 419
Cdd:COG1196 483 LEE----------LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 420 VLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADksktIRELQVQIDNNNRFLR 499
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD----ARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 500 KNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVE 579
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490
....*....|....*
gi 558149408 580 KMSSKERALQTKILA 594
Cdd:COG1196 709 LAEAEEERLEEELEE 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
366-592 |
2.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 366 ALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlneNKLITEAKDlEISEVRSQMQAH 445
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL---ARRIRALEQ-ELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 446 LKELEhvrDLQKAAEERLQEYQENMlsyRRSYADKSKTIRELQVQIDNNNRFLRKNSLedekynIEKKYEYLKRQLEKMD 525
Cdd:COG4942 89 EKEIA---ELRAELEAQKEELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEELR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149408 526 VQNQELAHQLANQEESLQhtelQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQTKI 592
Cdd:COG4942 157 ADLAELAALRAELEAERA----ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| actino_IHF |
NF041260 |
integration host factor, actinobacterial type; Members of this family are nucleoid-associated ... |
247-291 |
2.78e-04 |
|
integration host factor, actinobacterial type; Members of this family are nucleoid-associated dsDNA-binding proteins called integration host factor (mIHF in mycobacteria and sIHF in streptomycetes) because of similarities in cellular role, not in sequence, to the integration host factor proteins of Escherichia coli. Actinobacterial-type IHF actually shows more sequence similarity to 30S ribosomal subunit protein S13. Some members are fused to an additional guanylate kinase domain. This HMM assigns the gene symbol mihF broadly across the actinobacteria.
Pssm-ID: 469160 Cd Length: 102 Bit Score: 40.55 E-value: 2.78e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 558149408 247 TNEQRKKALKKATRAQKQRAEhfeasvenLTSKIRKREVKLSEVL 291
Cdd:NF041260 6 TPEQRAAALEKAAAARRARAE--------LKAALKAGELSLAEVL 42
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
387-613 |
3.02e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 387 EEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQKAAEERLQEY 466
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 467 QENMLSYRRSYADKSKTIRELQVQIDNNNrflrknslEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTE 546
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLG--------EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149408 547 LQLKEKLAEYDALARQLEAALEEgRKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKL 613
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKR-RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
205-578 |
3.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 205 QIQKKEAENDQLKAKIQTLEKKIiewklqigenkhqilavkETNEQRKKALKKATRAQKQRAEHFEAS--VENLTSKIRK 282
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERL------------------EALEAELDALQERREALQRLAEYSWDEidVASAEREIAE 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 283 REVKLSEVLSASSVWKnhyekaveektRLEVQTETLKEQITKLLEDLKKIQdhgrnsneeicGKLTSISSEKANIHLENA 362
Cdd:COG4913 673 LEAELERLDASSDDLA-----------ALEEQLEELEAELEELEEELDELK-----------GEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 363 KLKALLTALEDNTVATEAELLD--LQEEV--KQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNE--NKLITEAKDLEIS 436
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEerFAAALgdAVERELRENLEERIDALRARLNRAEEELERAMRAfnREWPAETADLDAD 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 437 -EVRSQMQAHLKELEhvrdlqkaaEERLQEYQENMLSYRRSYADKSKTirELQVQIDNN-----NRFLRKN-SLEDEKYN 509
Cdd:COG4913 811 lESLPEYLALLDRLE---------EDGLPEYEERFKELLNENSIEFVA--DLLSKLRRAireikERIDPLNdSLKRIPFG 879
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 558149408 510 IEKKYeylkrQLEKMDVQNQELAH----QLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEV 578
Cdd:COG4913 880 PGRYL-----RLEARPRPDPEVREfrqeLRAVTSGASLFDEELSEARFAALKRLIERLRSEEEESDRRWRARV 947
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
230-652 |
3.98e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 230 WKLQIGENKHQILAVKETNEQRKKALKKATRAQKQRAEHFEASVENLTSKIRKREVKLSEVLSASSV------WKNHYEK 303
Cdd:TIGR00606 571 NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEesdlerLKEEIEK 650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 304 AVEEKTRLEVQTETLKEQITKLLEDlkkiqdhgrnsNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELL 383
Cdd:TIGR00606 651 SSKQRAMLAGATAVYSQFITQLTDE-----------NQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELK 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 384 DLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlneNKLITEAKDlEISEVRSQMQAHLKELEHVRDLQK--AAEE 461
Cdd:TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKV---NRDIQRLKN-DIEEQETLLGTIMPEEESAKVCLTdvTIME 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 462 RLQEYQEnmlsyrrsyaDKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLE---KMDVQNQELAHQLANQ 538
Cdd:TIGR00606 796 RFQMELK----------DVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIElnrKLIQDQQEQIQHLKSK 865
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 539 EESLQHTELQLKEKLAEYDALARQLEaaleegrkKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEK 618
Cdd:TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLV--------ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK 937
|
410 420 430
....*....|....*....|....*....|....
gi 558149408 619 QQQVCLKELEHNLQKSENQTHSIQNYVQFLKNSY 652
Cdd:TIGR00606 938 KAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
147-569 |
4.02e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 147 MHKLTESENENDGLRKEMLITERRIVELSSRLQlekanALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKK 226
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELE-----ELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 227 IIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQKQRAEHFEASVENLTSKIRKREvklsevlsassvwkNHYEKAVE 306
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE--------------EELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 307 EKTRLEVQTETLKEQITkLLEDLKKIQDHGR--NSNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLD 384
Cdd:COG4717 221 ELEELEEELEQLENELE-AAALEERLKEARLllLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 385 LQEEVKQQENLAEQYKTEVQKLQTEAEEL----KTRYEKVLNENKLITEAKDL--EISEVRSQMQAHLKELEHVRDLQKA 458
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALglppDLSPEELLELLDRIEELQELlrEAEELEEELQLEELEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 459 AEERLQEYQENMLSYRRsYADKSKTIRELQVQIDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQ 538
Cdd:COG4717 380 GVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430
....*....|....*....|....*....|...
gi 558149408 539 EESLQHTELQ--LKEKLAEYDALARQLEAALEE 569
Cdd:COG4717 459 EAELEQLEEDgeLAELLQELEELKAELRELAEE 491
|
|
| DUF3450 |
pfam11932 |
Protein of unknown function (DUF3450); This family of proteins are functionally ... |
499-569 |
4.21e-04 |
|
Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.
Pssm-ID: 432198 [Multi-domain] Cd Length: 238 Bit Score: 42.22 E-value: 4.21e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558149408 499 RKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQhtelQLKEKLAEYDALARQLEAALEE 569
Cdd:pfam11932 35 KIDKWDDEKQELLAEYRALKAELESLEVYNRQLERLVASQEQEIA----SLERQIEEIERTERELVPLMLK 101
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
236-594 |
4.61e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 236 ENKHQILAVKETNEQRKKAlKKATRAQKQRAEHFEASVENLTSKIRKREV---------KLSEVLSASSVWKNHYEKAVE 306
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDA-EEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaeearKADELKKAEEKKKADEAKKAE 1299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 307 EKTRLE-----VQTETLKEQITKLLEDLKKIQDHGRNSNEEICGK--LTSISSEKANIHLENAKLKALLTALEDNTVATE 379
Cdd:PTZ00121 1300 EKKKADeakkkAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 380 AELLDLQEEVKQQenlAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEvrsQMQAHLKELEHVRDLQKAA 459
Cdd:PTZ00121 1380 ADAAKKKAEEKKK---ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD---EAKKKAEEAKKADEAKKKA 1453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 460 EERLQEYQENMLSYRRSYADKSKTIRELQVQIDNnnrfLRKNSLEDEKYNIE--KKYEYLKRQLEKMDVQNQELAHQLAN 537
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE----AKKKAEEAKKKADEakKAAEAKKKADEAKKAEEAKKADEAKK 1529
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 558149408 538 QEESLQHTELQLKEKLAEYDALARQLEAaleegrkKESEEVEKMSSKERALQTKILA 594
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEEL-------KKAEEKKKAEEAKKAEEDKNMA 1579
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
371-589 |
4.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 371 LEDNTVATEAEllDLQEEVKQQENLAEQYKTEVQKLQT--EAEELKTRYEKvlnenkLITEAKDLEISEVRSQMQAHLKE 448
Cdd:COG4913 218 LEEPDTFEAAD--ALVEHFDDLERAHEALEDAREQIELlePIRELAERYAA------ARERLAELEYLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 449 LEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRflrkNSLEDekyniekkyeyLKRQLEKMDVQN 528
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG----DRLEQ-----------LEREIERLEREL 354
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 558149408 529 QELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQ 589
Cdd:COG4913 355 EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR 415
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
158-581 |
1.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 158 DGLRKEMLITERR------IVELSSRLQLEKANALKADHLSKSVGAVHSH-----LQCQIQKKEAENDQLKAKIQTLEKK 226
Cdd:COG4913 238 ERAHEALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 227 IIEWKLQIGENKHQILAV----KETNEQRKKALKKATRAQKQRAEHFEASVENLtskirkrevKLSEVLSASSVWKNHyE 302
Cdd:COG4913 318 LDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAAL---------GLPLPASAEEFAALR-A 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 303 KAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEIcgklTSISSEKANIHlenAKLKALLTALEDNTVATE--- 379
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI----ASLERRKSNIP---ARLLALRDALAEALGLDEael 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 380 ---AELLDLQEEVKQQENLAEQY---------------------------KTEVQ-----------------------KL 406
Cdd:COG4913 461 pfvGELIEVRPEEERWRGAIERVlggfaltllvppehyaaalrwvnrlhlRGRLVyervrtglpdperprldpdslagKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 407 QTE-----------------------AEELK----------------TRYEK----------VL---NENKLitEAKDLE 434
Cdd:COG4913 541 DFKphpfrawleaelgrrfdyvcvdsPEELRrhpraitragqvkgngTRHEKddrrrirsryVLgfdNRAKL--AALEAE 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 435 ISEVRSQMQAHLKELEHVRDLQKAAEERLQEYQ--ENMLSYRRSYADKSKTIRELQVQIDNnnrfLRKNSLEDEKyniek 512
Cdd:COG4913 619 LAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELER----LDASSDDLAA----- 689
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558149408 513 kyeyLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKM 581
Cdd:COG4913 690 ----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
154-587 |
1.20e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 154 ENENDGLRKEMLITERRIVELSSRLQLEKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQ 233
Cdd:pfam01576 144 EDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 234 IGENKHQILAVKETNEQRKKALKKAtraqKQRAEHFEASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEV 313
Cdd:pfam01576 224 IAELQAQIAELRAQLAKKEEELQAA----LARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGE 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 314 QTETLKEQITKLLeDLKKIQDHGRNSNEeicgkltsissekanihlenAKLKALLTALEDNTVATEAELLDLQEEVKQQe 393
Cdd:pfam01576 300 ELEALKTELEDTL-DTTAAQQELRSKRE--------------------QEVTELKKALEEETRSHEAQLQEMRQKHTQA- 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 394 nlaeqykteVQKLQTEAEELKtRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRdlqKAAEERLQEYQENMLSY 473
Cdd:pfam01576 358 ---------LEELTEQLEQAK-RNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKR---KKLEGQLQELQARLSES 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 474 RRSYADKSKTIRELQVQIDNNNRFLrkNSLEDEKYNIEKKYEYLKRQLEKMDVQNQE-------LAHQLANQEESLQHTE 546
Cdd:pfam01576 425 ERQRAELAEKLSKLQSELESVSSLL--NEAEGKNIKLSKDVSSLESQLQDTQELLQEetrqklnLSTRLRQLEDERNSLQ 502
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 558149408 547 LQLKEKLAEYDALARQ---LEAALEEGRKKESEEVEKMSSKERA 587
Cdd:pfam01576 503 EQLEEEEEAKRNVERQlstLQAQLSDMKKKLEEDAGTLEALEEG 546
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
355-593 |
1.31e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 355 ANIHLENAKLKALLTALEDNTVATEAELLD-LQ------EEVKQQENLAEQYKT---EVQKL-QTEAEELKTRYEKVLN- 422
Cdd:PRK10929 19 AATAPDEKQITQELEQAKAAKTPAQAEIVEaLQsalnwlEERKGSLERAKQYQQvidNFPKLsAELRQQLNNERDEPRSv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 423 ENKLITEAKDLEISEVRSQMqahlkeLEHVRDLQKAaEERLQEYQENMLSY-------RRSYADKSKTIREL-------- 487
Cdd:PRK10929 99 PPNMSTDALEQEILQVSSQL------LEKSRQAQQE-QDRAREISDSLSQLpqqqteaRRQLNEIERRLQTLgtpntpla 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 488 -----QVQIDNNNRFLRKNSLEDEKYN-------IEKKYEYLKRQLEKMDVQNQELAHQLANQ-----EESLQHTEL--- 547
Cdd:PRK10929 172 qaqltALQAESAALKALVDELELAQLSannrqelARLRSELAKKRSQQLDAYLQALRNQLNSQrqreaERALESTELlae 251
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 558149408 548 ---QLKEKLAEYDALARQLEAALEEgrkkESEEVEKMSSKERALQTKIL 593
Cdd:PRK10929 252 qsgDLPKSIVAQFKINRELSQALNQ----QAQRMDLIASQQRQAASQTL 296
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
219-564 |
1.40e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 219 KIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQKQRAEH--FEASVENLTSKIRKR-------EVKLSE 289
Cdd:COG5022 763 RYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYrsYLACIIKLQKTIKREkklreteEVEFSL 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 290 V-------LSASSVWKNHYEKAVEEKTRLEVQT--ETLKEQITKLLEDLKKIqDHGRNSNEEICGKLTSISSEKANIHLE 360
Cdd:COG5022 843 KaevliqkFGRSLKAKKRFSLLKKETIYLQSAQrvELAERQLQELKIDVKSI-SSLKLVNLELESEIIELKKSLSSDLIE 921
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 361 NAKLK-ALLTALEDNT------------VATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLI 427
Cdd:COG5022 922 NLEFKtELIARLKKLLnnidleegpsieYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 428 TeakdlEISEVRSQMQAHLKELEHVRdlqkaaeERLQEYQENMLSYRRSYADKSktirelqvqidnnnrflRKNSLEDEK 507
Cdd:COG5022 1002 A-----ELSKQYGALQESTKQLKELP-------VEVAELQSASKIISSESTELS-----------------ILKPLQKLK 1052
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 558149408 508 YNIEKKYEYLKRQLEKMDVQNqELAHQLANQEESLQHTELQLKE-KLAEYDALARQLE 564
Cdd:COG5022 1053 GLLLLENNQLQARYKALKLRR-ENSLLDDKQLYQLESTENLLKTiNVKDLEVTNRNLV 1109
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
104-577 |
1.58e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 104 KISKQEDLLIKELETLKHVKELLLHLLRTTEHKEISSKH-IDVLMHKLTESENENDGLRKEMLITERRIVELSsrlQLEK 182
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLReINEISSELPELREELEKLEKEVKELEELKEEIE---ELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 183 ANALKADHLsKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLE--KKIIEWKLQIGENKHQILAVKETNEQRKKALKKATR 260
Cdd:PRK03918 246 ELESLEGSK-RKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 261 AQKQRAEHFEASVENLtSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEvqteTLKEQITKL-LEDLKKIQDHGRNS 339
Cdd:PRK03918 325 GIEERIKELEEKEERL-EELKKKLKELEKRLEELEERHELYEEAKAKKEELE----RLKKRLTGLtPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 340 NEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEvkQQENLAEQYKTEVQKLQTEAEELKTRYEK 419
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE--HRKELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 420 VLNENKLIteakdleisEVRSQMQAHLKELEHVRDLQKAAEERLQEYQ-ENMLSYRRSYADKSKTIRELQVQIDNNNRFL 498
Cdd:PRK03918 478 LRKELREL---------EKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 499 -RKNSLEDEKYNIEKKYEYLKRQLEKMDVQNQELA----------------------------HQLANQEESLQHTELQL 549
Cdd:PRK03918 549 eKLEELKKKLAELEKKLDELEEELAELLKELEELGfesveeleerlkelepfyneylelkdaeKELEREEKELKKLEEEL 628
|
490 500 510
....*....|....*....|....*....|.
gi 558149408 550 K---EKLAEYDALARQLEAALEEGRKKESEE 577
Cdd:PRK03918 629 DkafEELAETEKRLEELRKELEELEKKYSEE 659
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
113-592 |
1.65e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 113 IKELETLKHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQ--LEKANALKADH 190
Cdd:PRK03918 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKelEKRLEELEERH 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 191 LsksvgavhshLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKhqilavKETNEQRKKALKKATRAQKQRAEHFE 270
Cdd:PRK03918 362 E----------LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA------KEEIEEEISKITARIGELKKEIKELK 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 271 ASVENLTSKIRKREVKLSEVLSASSvwKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRN-----SNEEICG 345
Cdd:PRK03918 426 KAIEELKKAKGKCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKeseliKLKELAE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 346 KLTSISSEKANIHLENAKLKA-LLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNEN 424
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKAeEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 425 KLITEAKDLEISEVRSQMQAHLKELEHVRDLQkAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNnnrfLRKNSLE 504
Cdd:PRK03918 584 FESVEELEERLKELEPFYNEYLELKDAEKELE-REEKELKKLEEELDKAFEELAETEKRLEELRKELEE----LEKKYSE 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 505 DEKYNIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKlaeydalarqleaaleEGRKKESEEVEKMSSK 584
Cdd:PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER----------------EKAKKELEKLEKALER 722
|
....*...
gi 558149408 585 ERALQTKI 592
Cdd:PRK03918 723 VEELREKV 730
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
143-601 |
2.17e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 143 IDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKANALKADHLSKSVgavhshlqcqiqkkEAENDQLKAKIQT 222
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV--------------EARREELEDRDEE 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 223 LEKKIIEWKLQIGENKHQILAVketneqRKKALKKATRAQKQR--AEHFEASVENLTSKIRKREVKLSEvlsassvwknh 300
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESL------REDADDLEERAEELReeAAELESELEEAREAVEDRREEIEE----------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 301 yekaveektrLEVQTETLKEQITKLLEDLKKIQDHgrnsneeicgkLTSISSEKANIHLENAKLKALLTALEDNtVATEA 380
Cdd:PRK02224 389 ----------LEEEIEELRERFGDAPVDLGNAEDF-----------LEELREERDELREREAELEATLRTARER-VEEAE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 381 ELLD------LQEEVKQQENL--AEQYKTEVQKLQTEAEELKTRYEKVlneNKLITEAKDL-----EISEVRSQMQAHLK 447
Cdd:PRK02224 447 ALLEagkcpeCGQPVEGSPHVetIEEDRERVEELEAELEDLEEEVEEV---EERLERAEDLveaedRIERLEERREDLEE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 448 ELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRflRKNSLEDEKYNIEKKYEYLKR---QLEKM 524
Cdd:PRK02224 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE--EVAELNSKLAELKERIESLERirtLLAAI 601
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149408 525 DVQNQELAhQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRkkeseeVEKMSSKERALQTKILALETELRE 601
Cdd:PRK02224 602 ADAEDEIE-RLREKREALAELNDERRERLAEKRERKRELEAEFDEAR------IEEAREDKERAEEYLEQVEEKLDE 671
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
111-634 |
2.19e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 111 LLIKELETLKHVKELLLHLLRTTEHKEISSKHIDVLMHKLTESENENDGLRKEMLITERRIVELSSRLQLEKANALKADH 190
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 191 LSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNEQRKKALKKATRAQKQRAEHFE 270
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 271 ASVENLTSKIRKREVKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKiqdhgrnsNEEICGKLTSI 350
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE--------EKEELEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 351 SSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEA 430
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 431 KDLEISEVRSQMQAHLK--ELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKNSLEDEKY 508
Cdd:pfam02463 540 NYKVAISTAVIVEVSATadEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDD 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 509 NIEKKYEYLKRQLEKMDVQNQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERAL 588
Cdd:pfam02463 620 KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL 699
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 558149408 589 QTKILALETELRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKS 634
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI 745
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
205-593 |
2.90e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 205 QIQKKEAENDQLKAKIQTLEKKIiewklqigENKHQILAVKETNEQRKKALKKATraqkqraehfeASVENLTSKIRKRE 284
Cdd:PRK03918 156 GLDDYENAYKNLGEVIKEIKRRI--------ERLEKFIKRTENIEELIKEKEKEL-----------EEVLREINEISSEL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 285 VKLSEVLSASSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDLKKIQDHGRNSNEEI------CGKLTSIsSEKANIH 358
Cdd:PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeleekVKELKEL-KEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 359 LENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVLNENKLITEAKDLEISEV 438
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 439 RSQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDNNNRFLRKNSL------EDEKYNIEK 512
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 513 KYEYLKRQLEKMDVQNQELAHQLANQEESLQhTELQLKEKLAEYDALARQLEAALEEGRKKESEEVEKMSSKERALQTKI 592
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
.
gi 558149408 593 L 593
Cdd:PRK03918 535 I 535
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
170-416 |
3.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 170 RIVELSSRLQLEKANALKADHLSKSVGAVHSHLQCQIQKKEAENDQLKAKIQTLEKKIIEWKLQIGENKHQILAVKETNE 249
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 250 QRKKALKKATRAQKQRAEHFEASVenltskirkrevklseVLSASSVwknhyEKAVEEKTRLEVQTETLKEQITKLLEDL 329
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAL----------------LLSPEDF-----LDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 330 KKIQDhgrnSNEEICGKLTSISSEKANIHLENAKLKALLTALEDNTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTE 409
Cdd:COG4942 160 AELAA----LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*..
gi 558149408 410 AEELKTR 416
Cdd:COG4942 236 AAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
374-635 |
3.96e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 374 NTVATEAELLDLQEEVKQQENLAEQYKTEVQKLQTEAEELKTRYEKVlnenKLITEAKDLEISEVRSQMQAHLKELEHVR 453
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----RKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 454 DLQKAAEERLQEYQENMLSYRRSYADKSKTIRELqvqidnnnrflrknslEDEKYNIEKKYEYLKRQLEKMDVQNQELAH 533
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEA----------------EAEIEELEAQIEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 534 QLANQEESLQHTELQLKEKLAEYDALARQLEAaLEEGRKKESEEVEKMSSKERALQTKIlaletelrerreerkrlvskl 613
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLED-LEEQIEELSEDIESLAAEIEELEELI--------------------- 868
|
250 260
....*....|....*....|..
gi 558149408 614 nnsEKQQqvclKELEHNLQKSE 635
Cdd:TIGR02168 869 ---EELE----SELEALLNERA 883
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
260-581 |
3.98e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 260 RAQKQRAEHF------EASVENLTSKIRKREVKLSEVLSA----SSVWKNHYEKAVEEKTRLEVQTETLKEQITKLLEDL 329
Cdd:pfam12128 217 RLNRQQVEHWirdiqaIAGIMKIRPEFTKLQQEFNTLESAelrlSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 330 KKIQDHGRNSNEEIcgkltsiSSEKANIHLENAKLkalltaledntvateaELLDLQEEVKQQENLaEQYKTEVQKL--- 406
Cdd:pfam12128 297 DQWKEKRDELNGEL-------SAADAAVAKDRSEL----------------EALEDQHGAFLDADI-ETAAADQEQLpsw 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 407 QTEAEELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELE-------HVRDLQKAAEERLQEYQENMLSYRRSYAD 479
Cdd:pfam12128 353 QSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKdklakirEARDRQLAVAEDDLQALESELREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 480 KSKTIRELQVQIDNNNRFLRKNSL---EDEKYNIEKKYEYLKRQLEKMDVQNQELahqlanqeESLQHTELQLKEKLAEY 556
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLNQAtatPELLLQLENFDERIERAREEQEAANAEV--------ERLQSELRQARKRRDQA 504
|
330 340
....*....|....*....|....*
gi 558149408 557 DALARQLEAALEEgRKKESEEVEKM 581
Cdd:pfam12128 505 SEALRQASRRLEE-RQSALDELELQ 528
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
411-622 |
4.55e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 411 EELKTRYEKVLNENKLITEAKDLEISEVRSQMQAHLKELEHVRDLQkaaeERLQEYQENMLSYRRSYADKSKTIRELQVQ 490
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQ----EELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 491 IDNNNRFLRKNSLEDEKYNIEKKYEYLKRQLEkmdvqnqelahQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEG 570
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQEELEELLEQLSLATEEE 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 558149408 571 RKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEKQQQV 622
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
423-643 |
5.78e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 423 ENKL-ITEAKDLEISEVRSQMQAHLKELEhvRDLQKAAE-----ERLQEYQENMLSYRrsYADKSKTIRELQVQIDNNNR 496
Cdd:COG1196 178 ERKLeATEENLERLEDILGELERQLEPLE--RQAEKAERyrelkEELKELEAELLLLK--LRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 497 flRKNSLEDEKYNIEKKYEYLKRQLEKMDVQ-------NQELAHQLANQEESLQHTELQLKEKLAEYDALARQLEAaLEE 569
Cdd:COG1196 254 --ELEELEAELAELEAELEELRLELEELELEleeaqaeEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-LEE 330
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 558149408 570 GRKKESEEVEKMSSKERALQTKILALETELRERREERKRLVSKLNNSEKQQQVCLKELEHNLQKSENQTHSIQN 643
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
378-592 |
7.28e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.56 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 378 TEAELLDLQEEVKQQENLAEQYKTEV-QKLQTeAEELKTRYEKVLNENKLIT------EAKDLEISEVR----------- 439
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLeQKLSV-AQAAHSQFEQAYQLVRKIAgevsrsEAWDVARELLRrlreqrhlaeq 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558149408 440 -SQMQAHLKELEHVRDLQKAAEERLQEYQENMLSYRRSYADKSKTIRELQVQIDnnnrflrknSLEDEKYNIEKKYEYLK 518
Cdd:PRK04863 515 lQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLE---------SLSESVSEARERRMALR 585
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 558149408 519 RQLEKMDVQNQELAhQLANQEESLQHTELQLKEKLAEYDALARQLEAALEEGRKKE---SEEVEKMSSKERALQTKI 592
Cdd:PRK04863 586 QQLEQLQARIQRLA-ARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERErelTVERDELAARKQALDEEI 661
|
|
| |
