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Conserved domains on  [gi|558143694|ref|XP_006119070|]
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inactive glycosyltransferase 25 family member 3 isoform X1 [Pelodiscus sinensis]

Protein Classification

Glyco_tranf_GTA_type and Glyco_transf_25 domain-containing protein( domain architecture ID 10953614)

Glyco_tranf_GTA_type and Glyco_transf_25 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 327-508 1.98e-43

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 155.93  E-value: 1.98e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 327 IFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNLGVDLLPGYYdpfsGRTLTKGEVGCFLSHYYIWKE 406
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYDRAKALRRY----GRPLTPGEIGCFLSHRKAWQK 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 407 IVARGLEKSVVFEDDVRFEVYFKvrltRLMEELEWAQLDWDLIYLG-RKQVNSEDEEPVEDV--RKLVVAEYSYW-TLAY 482
Cdd:COG3306   79 IVESGLPYALILEDDVILSPDFA----EVLEALAWLPADWDIVKLEtSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154

                        170       180
                 ....*....|....*....|....*..
gi 558143694 483 IISQRGAQKLIR-AEPLSkmLPVDEFL 508
Cdd:COG3306  155 LISRKAAKKLLAlLEPID--RPVDDFL 179
Glyco_tranf_GTA_type super family cl11394
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 38-184 2.43e-10

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


The actual alignment was detected with superfamily member cd04192:

Pssm-ID: 472172 [Multi-domain]  Cd Length: 229  Bit Score: 61.15  E-value: 2.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  38 VVIAilARNSEHSLAHYLGALERLDYPKERISVWCATDHNSDNTTEILwEWLTAmEKHYHYiewKSVEEPRsypeelgpK 117
Cdd:cd04192    1 VVIA--ARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL-EFAAA-KPNFQL---KILNNSR--------V 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558143694 118 HWTDeryehvmrlKQEALSFA--RAKGaDYLLLTDTDSILTNNQTLTFLIAQNKSVIAPMLDSQTYYSN 184
Cdd:cd04192   66 SISG---------KKNALTTAikAAKG-DWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKG 124
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 327-508 1.98e-43

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 155.93  E-value: 1.98e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 327 IFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNLGVDLLPGYYdpfsGRTLTKGEVGCFLSHYYIWKE 406
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYDRAKALRRY----GRPLTPGEIGCFLSHRKAWQK 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 407 IVARGLEKSVVFEDDVRFEVYFKvrltRLMEELEWAQLDWDLIYLG-RKQVNSEDEEPVEDV--RKLVVAEYSYW-TLAY 482
Cdd:COG3306   79 IVESGLPYALILEDDVILSPDFA----EVLEALAWLPADWDIVKLEtSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154

                        170       180
                 ....*....|....*....|....*..
gi 558143694 483 IISQRGAQKLIR-AEPLSkmLPVDEFL 508
Cdd:COG3306  155 LISRKAAKKLLAlLEPID--RPVDDFL 179
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
 326-508 2.54e-36

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 132.34  E-value: 2.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 326 EIFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNLGVDllpgYYDPFSGRTLTKGEVGCFLSHYYIWK 405
Cdd:cd06532    1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 406 EIVARGLEKSVVFEDDVRFEvyfkvrltrlmeelewaqldwdliylgrkqvnsedeepvedvrklvvaeySYWTLAYIIS 485
Cdd:cd06532   77 KIVESNLEYALILEDDAILD--------------------------------------------------PDGTAGYLVS 106

                        170       180
                 ....*....|....*....|...
gi 558143694 486 QRGAQKLIRAEPlSKMLPVDEFL 508
Cdd:cd06532  107 RKGAKKLLAALE-PIDLPVDVFL 128
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
 324-508 1.71e-33

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 127.17  E-value: 1.71e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  324 FDEIFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNlgvDLLPGYYDPFSGRTLTKGEVGCFLSHYYI 403
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFK---LYNFLLRSKYAGRPLTLGEIGCFLSHYSL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  404 WKEIVARGLEKSVVFEDDVRFEVYFKVRLTRLMEELewaqLDWDLIYLGRKQVNSEDEEPVEDVRKLVVAEYSY------ 477
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEI----NELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKkfkrtp 153

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 558143694  478 -----------------WTLAYIISQRGAQKLI-RAEPLSkmLPVDEFL 508
Cdd:pfam01755 154 iadygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
GT_2_like_e cd04192
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
 38-184 2.43e-10

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133035 [Multi-domain]  Cd Length: 229  Bit Score: 61.15  E-value: 2.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  38 VVIAilARNSEHSLAHYLGALERLDYPKERISVWCATDHNSDNTTEILwEWLTAmEKHYHYiewKSVEEPRsypeelgpK 117
Cdd:cd04192    1 VVIA--ARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL-EFAAA-KPNFQL---KILNNSR--------V 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558143694 118 HWTDeryehvmrlKQEALSFA--RAKGaDYLLLTDTDSILTNNQTLTFLIAQNKSVIAPMLDSQTYYSN 184
Cdd:cd04192   66 SISG---------KKNALTTAikAAKG-DWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKG 124
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 34-158 2.49e-06

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 49.74  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  34 ELPTVVIAILARNSEHSLAHYLGALERLDYPKERISVWCATDHNSDNTTEILwEWLTAMEKHYHYIEwksVEEPRSypee 113
Cdd:COG1215   27 DLPRVSVIIPAYNEEAVIEETLRSLLAQDYPKEKLEVIVVDDGSTDETAEIA-RELAAEYPRVRVIE---RPENGG---- 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 558143694 114 lgpkhwtderyehvmrlKQEALSFA--RAKGaDYLLLTDTDSILTNN 158
Cdd:COG1215   99 -----------------KAAALNAGlkAARG-DIVVFLDADTVLDPD 127
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 327-508 1.98e-43

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 155.93  E-value: 1.98e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 327 IFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNLGVDLLPGYYdpfsGRTLTKGEVGCFLSHYYIWKE 406
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDGRDLSEEELARYDRAKALRRY----GRPLTPGEIGCFLSHRKAWQK 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 407 IVARGLEKSVVFEDDVRFEVYFKvrltRLMEELEWAQLDWDLIYLG-RKQVNSEDEEPVEDV--RKLVVAEYSYW-TLAY 482
Cdd:COG3306   79 IVESGLPYALILEDDVILSPDFA----EVLEALAWLPADWDIVKLEtSKRKVFLGRRKIKKLggYRLVRPYSPPLgTAGY 154

                        170       180
                 ....*....|....*....|....*..
gi 558143694 483 IISQRGAQKLIR-AEPLSkmLPVDEFL 508
Cdd:COG3306  155 LISRKAAKKLLAlLEPID--RPVDDFL 179
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
 326-508 2.54e-36

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 132.34  E-value: 2.54e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 326 EIFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNLGVDllpgYYDPFSGRTLTKGEVGCFLSHYYIWK 405
Cdd:cd06532    1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694 406 EIVARGLEKSVVFEDDVRFEvyfkvrltrlmeelewaqldwdliylgrkqvnsedeepvedvrklvvaeySYWTLAYIIS 485
Cdd:cd06532   77 KIVESNLEYALILEDDAILD--------------------------------------------------PDGTAGYLVS 106

                        170       180
                 ....*....|....*....|...
gi 558143694 486 QRGAQKLIRAEPlSKMLPVDEFL 508
Cdd:cd06532  107 RKGAKKLLAALE-PIDLPVDVFL 128
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
 324-508 1.71e-33

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 127.17  E-value: 1.71e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  324 FDEIFLINLVRRPDRRQRMLSSLHELELEPLVVDAVDGSALNSSDIKNlgvDLLPGYYDPFSGRTLTKGEVGCFLSHYYI 403
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFK---LYNFLLRSKYAGRPLTLGEIGCFLSHYSL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  404 WKEIVARGLEKSVVFEDDVRFEVYFKVRLTRLMEELewaqLDWDLIYLGRKQVNSEDEEPVEDVRKLVVAEYSY------ 477
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEI----NELEFLRLGEWLKTRFDPNDKFIVRLETFLMDSKkfkrtp 153

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 558143694  478 -----------------WTLAYIISQRGAQKLI-RAEPLSkmLPVDEFL 508
Cdd:pfam01755 154 iadygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
GT_2_like_e cd04192
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
 38-184 2.43e-10

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133035 [Multi-domain]  Cd Length: 229  Bit Score: 61.15  E-value: 2.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  38 VVIAilARNSEHSLAHYLGALERLDYPKERISVWCATDHNSDNTTEILwEWLTAmEKHYHYiewKSVEEPRsypeelgpK 117
Cdd:cd04192    1 VVIA--ARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL-EFAAA-KPNFQL---KILNNSR--------V 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 558143694 118 HWTDeryehvmrlKQEALSFA--RAKGaDYLLLTDTDSILTNNQTLTFLIAQNKSVIAPMLDSQTYYSN 184
Cdd:cd04192   66 SISG---------KKNALTTAikAAKG-DWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKG 124
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 34-158 2.49e-06

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 49.74  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  34 ELPTVVIAILARNSEHSLAHYLGALERLDYPKERISVWCATDHNSDNTTEILwEWLTAMEKHYHYIEwksVEEPRSypee 113
Cdd:COG1215   27 DLPRVSVIIPAYNEEAVIEETLRSLLAQDYPKEKLEVIVVDDGSTDETAEIA-RELAAEYPRVRVIE---RPENGG---- 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 558143694 114 lgpkhwtderyehvmrlKQEALSFA--RAKGaDYLLLTDTDSILTNN 158
Cdd:COG1215   99 -----------------KAAALNAGlkAARG-DIVVFLDADTVLDPD 127
CESA_like_1 cd06439
CESA_like_1 is a member of the cellulose synthase (CESA) superfamily; This is a subfamily of ...
 34-89 4.34e-04

CESA_like_1 is a member of the cellulose synthase (CESA) superfamily; This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.


Pssm-ID: 133061 [Multi-domain]  Cd Length: 251  Bit Score: 42.57  E-value: 4.34e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 558143694  34 ELPTVVIAILARNSEHSLAHYLGALERLDYPKERISVWCATDHNSDNTTEILWEWL 89
Cdd:cd06439   27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYA 82
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 40-158 3.17e-03

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 38.64  E-value: 3.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 558143694  40 IAILARNSEHSLAHYLGALERLDYPKERIsvWCATDHNSDNTTEILWEWLTAMEKHYHYIewksveeprsYPEELGPKHW 119
Cdd:cd00761    1 VIIPAYNEEPYLERCLESLLAQTYPNFEV--IVVDDGSTDGTLEILEEYAKKDPRVIRVI----------NEENQGLAAA 68

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 558143694 120 tderyehvmrlKQEALSFARakgADYLLLTDTDSILTNN 158
Cdd:cd00761   69 -----------RNAGLKAAR---GEYILFLDADDLLLPD 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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