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Conserved domains on  [gi|545498609|ref|XP_005620280|]
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ubiquitin carboxyl-terminal hydrolase 1 isoform X1 [Canis lupus familiaris]

Protein Classification

ubiquitin carboxyl-terminal hydrolase; ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 10245588)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that deubiquitinates polyubiquitinated target proteins; ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 2.19e-110

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 339.56  E-value: 2.19e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671  121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671  201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                        170
                 ....*....|....*.
gi 545498609 584 HSGITISSGHYTASVK 599
Cdd:cd02671  280 HSGATISSGHYTAYVR 295
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
82-222 2.87e-11

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02657:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 305  Bit Score: 65.43  E-value: 2.87e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFksgvkhlfniisrkKEALKDEanqkdKGSCKEDSLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNY-----NPARRGANQSSDNLTNALRDLFDTMDKKQE 61
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 545498609 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEE 222
Cdd:cd02657   62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
 
Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 2.19e-110

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 339.56  E-value: 2.19e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671  121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671  201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                        170
                 ....*....|....*.
gi 545498609 584 HSGITISSGHYTASVK 599
Cdd:cd02671  280 HSGATISSGHYTAYVR 295
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
415-605 7.00e-27

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 111.77  E-value: 7.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  415 NKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpktemktlrwaisQFAS 494
Cdd:pfam00443 107 NGNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFL-------------QFSK 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  495 VERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDcyGGGLSKINTPLLTPLKLSLEEWSTKPTND 574
Cdd:pfam00443 174 LEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRF-----SYN--RSTWEKLNTEVEFPLELDLSRYLAEELKP 246
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 545498609  575 ------SYGLFAVVMHSGiTISSGHYTASVKVTDLNS 605
Cdd:pfam00443 247 ktnnlqDYRLVAVVVHSG-SLSSGHYIAYIKAYENNR 282
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-222 2.87e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.43  E-value: 2.87e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFksgvkhlfniisrkKEALKDEanqkdKGSCKEDSLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNY-----NPARRGANQSSDNLTNALRDLFDTMDKKQE 61
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 545498609 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEE 222
Cdd:cd02657   62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
482-599 1.16e-07

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 55.65  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  482 MKTLRWAISQFASVERIVGEDKYFCENcHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLK 561
Cdd:COG5077   337 MKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRF-----EYDFERDMMVKINDRYEFPLE 410
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 545498609  562 LSLEEWSTKPTNDS------YGLFAVVMHSGiTISSGHYTASVK 599
Cdd:COG5077   411 IDLLPFLDRDADKSensdavYVLYGVLVHSG-DLHEGHYYALLK 453
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-101 1.27e-03

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 41.71  E-value: 1.27e-03
                         10        20
                 ....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILAL 20
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
81-112 3.15e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 40.33  E-value: 3.15e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 545498609   81 VGLNNLGNTCYLNSILQVLYFCPGF-KSGVKHL 112
Cdd:pfam13423   1 SGLETHIPNSYTNSLLQLLRFIPPLrNLALSHL 33
 
Name Accession Description Interval E-value
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
424-599 2.19e-110

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 339.56  E-value: 2.19e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 424 ELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDK 503
Cdd:cd02671  121 ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDK 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 504 YFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYgGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVM 583
Cdd:cd02671  201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCY-GGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVM 279
                        170
                 ....*....|....*.
gi 545498609 584 HSGITISSGHYTASVK 599
Cdd:cd02671  280 HSGATISSGHYTAYVR 295
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
425-604 6.60e-31

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 121.82  E-value: 6.60e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVqedelskveesseisPEPKTEMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02257   56 LIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL---------------PVKGLPQVSLEDCLEKFFKEEILEGDNCY 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 505 FCEnCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGlSKINTPLLTPLKLSLEEWSTKPTNDS--------Y 576
Cdd:cd02257  121 KCE-KKKKQEATKRLKIKKLPPVLIIHLKRF-----SFNEDGTK-EKLNTKVSFPLELDLSPYLSEGEKDSdsdngsykY 193
                        170       180
                 ....*....|....*....|....*...
gi 545498609 577 GLFAVVMHSGITISSGHYTASVKVTDLN 604
Cdd:cd02257  194 ELVAVVVHSGTSADSGHYVAYVKDPSDG 221
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
415-605 7.00e-27

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 111.77  E-value: 7.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  415 NKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpktemktlrwaisQFAS 494
Cdd:pfam00443 107 NGNHSTENESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICFL-------------QFSK 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  495 VERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDcyGGGLSKINTPLLTPLKLSLEEWSTKPTND 574
Cdd:pfam00443 174 LEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRF-----SYN--RSTWEKLNTEVEFPLELDLSRYLAEELKP 246
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 545498609  575 ------SYGLFAVVMHSGiTISSGHYTASVKVTDLNS 605
Cdd:pfam00443 247 ktnnlqDYRLVAVVVHSG-SLSSGHYIAYIKAYENNR 282
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
426-603 2.64e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 107.01  E-value: 2.64e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 426 VEKLFQGQLVLRTRCLECESLTERREDFQDISVpvqedelsKVEESSEISpepktemKTLRwaisQFASVERIVGEDKYF 505
Cdd:cd02663  109 VHEIFQGILTNETRCLTCETVSSRDETFLDLSI--------DVEQNTSIT-------SCLR----QFSATETLCGRNKFY 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 506 CENCHHYTEAERSLLFDKMPEVITIHLKCFAasgleFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDS--YGLFAVVM 583
Cdd:cd02663  170 CDECCSLQEAEKRMKIKKLPKILALHLKRFK-----YDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPDrlYELVAVVV 244
                        170       180
                 ....*....|....*....|
gi 545498609 584 HSGITISSGHYTASVKVTDL 603
Cdd:cd02663  245 HIGGGPNHGHYVSIVKSHGG 264
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-599 5.99e-24

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 103.12  E-value: 5.99e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVpvqedELSKVEesseispepktemkTLRWAISQFASVERIVGEDKY 504
Cdd:cd02661  123 LVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSL-----DIKGAD--------------SLEDALEQFTKPEQLDGENKY 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 505 FCENCHHYTEAERSLLFDKMPEVITIHLKCFAasglefdcyGGGLSKINTPLLTPLKLSLEEWSTKPTNDS--YGLFAVV 582
Cdd:cd02661  184 KCERCKKKVKASKQLTIHRAPNVLTIHLKRFS---------NFRGGKINKQISFPETLDLSPYMSQPNDGPlkYKLYAVL 254
                        170
                 ....*....|....*..
gi 545498609 583 MHSGITISSGHYTASVK 599
Cdd:cd02661  255 VHSGFSPHSGHYYCYVK 271
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-600 4.40e-22

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 95.82  E-value: 4.40e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPvqedelskVEESSEISPEPktemkTLRWAISQFASVERIVGEDKY 504
Cdd:cd02674   39 IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLP--------IPSGSGDAPKV-----TLEDCLRLFTKEETLDGDNAW 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 505 FCENCHHYTEAERSLLFDKMPEVITIHLKcfaasglEFDCYGGGLSKINTPLLTPLK-LSLEEW---STKPTNDSYGLFA 580
Cdd:cd02674  106 KCPKCKKKRKATKKLTISRLPKVLIIHLK-------RFSFSRGSTRKLTTPVTFPLNdLDLTPYvdtRSFTGPFKYDLYA 178
                        170       180
                 ....*....|....*....|
gi 545498609 581 VVMHSGiTISSGHYTASVKV 600
Cdd:cd02674  179 VVNHYG-SLNGGHYTAYCKN 197
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-625 1.50e-21

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 95.53  E-value: 1.50e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPvqedelskveesseiSPEPKTEMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02667   68 FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLP---------------RSDEIKSECSIESCLKQFTEVEILEGNNKF 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 505 FCENChhyTEAERSLLFDKMPEVITIHLKCFAASGLefdcygGGLSKINTPLLTPLKLSLEEW-------STKPTNDSYG 577
Cdd:cd02667  133 ACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRS------ANLRKVSRHVSFPEILDLAPFcdpkcnsSEDKSSVLYR 203
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 545498609 578 LFAVVMHSGiTISSGHYTASVKVTDLNSLeLDKGNFVIDQMCEIGKPE 625
Cdd:cd02667  204 LYGVVEHSG-TMRSGHYVAYVKVRPPQQR-LSDLTKSKPAADEAGPGS 249
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
416-604 1.19e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 93.86  E-value: 1.19e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 416 KGAEQIGfeLVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVqedelskveesseispepkTEMKTLRWAISQFASV 495
Cdd:cd02659  105 KGTGQEG--LIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV-------------------KGKKNLEESLDAYVQG 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 496 ERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLKLSLE---------- 565
Cdd:cd02659  164 ETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRF-----EFDFETMMRIKINDRFEFPLELDMEpytekglakk 238
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 545498609 566 EWSTKPTNDS---YGLFAVVMHSGiTISSGHYTASVKVTDLN 604
Cdd:cd02659  239 EGDSEKKDSEsyiYELHGVLVHSG-DAHGGHYYSYIKDRDDG 279
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-599 2.28e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 92.87  E-value: 2.28e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 425 LVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEdelskveesseispepkteMKTLRWAISQFASVERIVGEDKY 504
Cdd:cd02668  117 IVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG-------------------HKTLEECIDEFLKEEQLTGDNQY 177
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 505 FCENCHHYTEAERSLLFDKMPEVITIHLKCFAasgleFDCYGGGLSKINTPLLTPLKLSLEEWS--TKPTNDSYGLFAVV 582
Cdd:cd02668  178 FCESCNSKTDATRRIRLTTLPPTLNFQLLRFV-----FDRKTGAKKKLNASISFPEILDMGEYLaeSDEGSYVYELSGVL 252
                        170
                 ....*....|....*..
gi 545498609 583 MHSGITISSGHYTASVK 599
Cdd:cd02668  253 IHQGVSAYSGHYIAHIK 269
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
426-602 1.13e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 90.89  E-value: 1.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 426 VEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEdelsKVEESSEISPEPKTEMKTLRWAISQFASVERiVGEDKYF 505
Cdd:cd02660  123 IHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPN----KSTPSWALGESGVSGTPTLSDCLDRFTRPEK-LGDFAYK 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 506 CENCHHYTEAERSLLFDKMPEVITIHLKCFAASGlefdcyGGGLSKINTPLLTPLKLSLEEWSTKPTNDS---------- 575
Cdd:cd02660  198 CSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSL------NKTSRKIDTYVQFPLELNMTPYTSSSIGDTqdsnsldpdy 271
                        170       180
                 ....*....|....*....|....*...
gi 545498609 576 -YGLFAVVMHSGiTISSGHYTASVKVTD 602
Cdd:cd02660  272 tYDLFAVVVHKG-TLDTGHYTAYCRQGD 298
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
425-594 2.17e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 72.14  E-value: 2.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 425 LVEKLFQGQLVLRTRCLEC--ESLTERREDFQDISVPVQEDelskveesseispepktemktlrwAISQFASVERIVGED 502
Cdd:cd02664   98 LIEKMFGGKLSTTIRCLNCnsTSARTERFRDLDLSFPSVQD------------------------LLNYFLSPEKLTGDN 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 503 KYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLKLSL-------------EEWST 569
Cdd:cd02664  154 QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRF-----SYDQKTHVREKIMDNVSINEVLSLpvrveskssesplEKKEE 228
                        170       180       190
                 ....*....|....*....|....*....|...
gi 545498609 570 KPTNDS--------YGLFAVVMHSGITISSGHY 594
Cdd:cd02664  229 ESGDDGelvtrqvhYRLYAVVVHSGYSSESGHY 261
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-222 2.87e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.43  E-value: 2.87e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFksgvkhlfniisrkKEALKDEanqkdKGSCKEDSLASYELICSLQSLIISVEQLQA 161
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPEL--------------RDALKNY-----NPARRGANQSSDNLTNALRDLFDTMDKKQE 61
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 545498609 162 SFllnpekytdelatQPRRLLNTLRELNPMYE------GYLQHDAQEVLQCILGNIQETCQLLKKEE 222
Cdd:cd02657   62 PV-------------PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECWSQLLSVLSQKLPGAGSKG 115
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
437-599 5.68e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 61.57  E-value: 5.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 437 RTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEpkTEMKTlrwAISQFASVERIvgedKYFCENCHHYTEAE 516
Cdd:cd02658  137 RLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEP--VPLED---CLKAYFAPETI----EDFCSTCKEKTTAT 207
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 517 RSLLFDKMPEVITIHLKCFAASglefdcYGGGLSKINTPLLTPLKLsleewstkpTNDSYGLFAVVMHSGITISSGHYTA 596
Cdd:cd02658  208 KTTGFKTFPDYLVINMKRFQLL------ENWVPKKLDVPIDVPEEL---------GPGKYELIAFISHKGTSVHSGHYVA 272

                 ...
gi 545498609 597 SVK 599
Cdd:cd02658  273 HIK 275
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
482-599 1.16e-07

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 55.65  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  482 MKTLRWAISQFASVERIVGEDKYFCENcHHYTEAERSLLFDKMPEVITIHLKCFaasglEFDCYGGGLSKINTPLLTPLK 561
Cdd:COG5077   337 MKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRF-----EYDFERDMMVKINDRYEFPLE 410
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 545498609  562 LSLEEWSTKPTNDS------YGLFAVVMHSGiTISSGHYTASVK 599
Cdd:COG5077   411 IDLLPFLDRDADKSensdavYVLYGVLVHSG-DLHEGHYYALLK 453
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-599 1.95e-07

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 54.89  E-value: 1.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFKSgvkhlfNIISRKKEALKDEANQKDKGSckedSLASyelicSLQSLIISVeqlqa 161
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTWELRD------YFLSDEYEESINEENPLGMHG----SVAS-----AYADLIKQL----- 326
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 162 sfllnpekYTDEL-ATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVVELSTKIEEKPHQK 240
Cdd:COG5560  327 --------YDGNLhAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKK 398
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 241 EEmsginsiemdnlrpsEDYKEKLpKGNGKRKSDTEFGnMKKKVKVSKEHQSLeenqrqtrskrKATGD-----TLEIPS 315
Cdd:COG5560  399 AK---------------ECWWEHL-KRNDSIITDLFQG-MYKSTLTCPGCGSV-----------SITFDpfmdlTLPLPV 450
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 316 K--------IIPkcvsenesarPSQKKSRVKINWLKPAT-----KQPSILSKFCSLGKITTNQ----GSKEQLKENEYDL 378
Cdd:COG5560  451 SmvwkhtivVFP----------ESGRRQPLKIELDASSTirglkKLVDAEYGKLGCFEIKVMCiyygGNYNMLEPADKVL 520
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 379 EEDLGKCE-------NDNTTNGCELESP-----------GDNVKPVNVNEVKPINKGAEQIGFELVEKLFQGQL-----V 435
Cdd:COG5560  521 LQDIPQTDfvylyetNDNGIEVPVVHLRiekgykskrlfGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTdvdlvS 600
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 436 LRTRCLECES--------LTER---REDFQDISVPVQEDE------------LSKVEESSEISPEPKTEMK----TLRWA 488
Cdd:COG5560  601 EQVRLLREESspsswlklETEIdtkREEQVEEEGQMNFNDavvisceweekrYLSLFSYDPLWTIREIGAAertiTLQDC 680
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 489 ISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFaASGLEFDcyggglSKINTPLLTP---LKLSLE 565
Cdd:COG5560  681 LNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRF-SSVRSFR------DKIDDLVEYPiddLDLSGV 753
                        570       580       590
                 ....*....|....*....|....*....|....
gi 545498609 566 EWSTKPTNDSYGLFAVVMHSGITiSSGHYTASVK 599
Cdd:COG5560  754 EYMVDDPRLIYDLYAVDNHYGGL-SGGHYTAYAR 786
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
82-101 4.18e-06

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 49.02  E-value: 4.18e-06
                         10        20
                 ....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS 20
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
81-222 1.43e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 47.87  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  81 VGLNNLGNTCYLNSILQvLYFCpgfksgVKHLFNIISRKKEALKDEANQKDKG-SCKEDSLASYELICSLQsliiSVEQL 159
Cdd:cd02666    2 AGLDNIGNTCYLNSLLQ-YFFT------IKPLRDLVLNFDESKAELASDYPTErRIGGREVSRSELQRSNQ----FVYEL 70
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 545498609 160 qaSFLLNPEKYTDELATQPRRLLntlrelnpmyeGYLQHDAQEVLQCIlGNIQetCQLLKKEE 222
Cdd:cd02666   71 --RSLFNDLIHSNTRSVTPSKEL-----------AYLALRQQDVTECI-DNVL--FQLEVALE 117
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-156 1.45e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 47.38  E-value: 1.45e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPG----FKSGVKHLFNIISRKKEALKDeANQKDkgsckedslaSYELICSLQSLIISV 156
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPAlrelLSETPKELFSQVCRKAPQFKG-YQQQD----------SHELLRYLLDGLRTF 68
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-107 2.78e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 46.93  E-value: 2.78e-05
                         10        20
                 ....*....|....*....|....*.
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFKS 107
Cdd:cd02658    1 GLRNLGNSCYLNSVLQVLFSIPSFQW 26
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-117 5.08e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 45.43  E-value: 5.08e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFksgVKHLFNIIS 117
Cdd:cd02662    1 GLVNLGNTCFMNSVLQALASLPSL---IEYLEEFLE 33
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
429-596 1.76e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 43.89  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 429 LFQGQLVLRTRCLECESLTERREDFQDI---SVPVQEDELSKVEESseispepktemktlrwAISQFASVERIvgeDKYF 505
Cdd:cd02662   55 PFDGLLASRIVCLQCGESSKVRYESFTMlslPVPNQSSGSGTTLEH----------------CLDDFLSTEII---DDYK 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 506 CENChhyteaerSLLFDKMPEVITIHLkcfaaSGLEFDCYGGGL---SKINTPLLTPLKLsleewstkptndsYGLFAVV 582
Cdd:cd02662  116 CDRC--------QTVIVRLPQILCIHL-----SRSVFDGRGTSTknsCKVSFPERLPKVL-------------YRLRAVV 169
                        170
                 ....*....|....
gi 545498609 583 MHSGiTISSGHYTA 596
Cdd:cd02662  170 VHYG-SHSSGHYVC 182
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-99 2.20e-04

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 43.43  E-value: 2.20e-04
                         10
                 ....*....|....*...
gi 545498609  82 GLNNLGNTCYLNSILQVL 99
Cdd:cd02674    1 GLRNLGNTCYMNSILQCL 18
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-228 2.21e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 43.95  E-value: 2.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYFCPGFKSGVkHLFNIisrkkealKDEANQKdkgSCKEDSLASYELICslqsliisvEQLQA 161
Cdd:cd02668    1 GLKNLGATCYVNSFLQLWFMNLEFRKAV-YECNS--------TEDAELK---NMPPDKPHEPQTII---------DQLQL 59
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609 162 SFLL---NPEKYTDelatqPRRLLNTLRELNPmyegyLQHDAQEVLQCILGNIQETCQLLKKEEVKNVVE 228
Cdd:cd02668   60 IFAQlqfGNRSVVD-----PSGFVKALGLDTG-----QQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQ 119
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
82-101 1.27e-03

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 41.71  E-value: 1.27e-03
                         10        20
                 ....*....|....*....|
gi 545498609  82 GLNNLGNTCYLNSILQVLYF 101
Cdd:COG5533    1 GLPNLGNTCFMNSVLQILAL 20
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
80-109 1.38e-03

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 42.16  E-value: 1.38e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 545498609   80 FVGLNNLGNTCYLNSILQVLYFCPGFKSGV 109
Cdd:COG5077   193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDV 222
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
425-602 1.73e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 41.10  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  425 LVEKLFQGQLVLRTRCLECESLTERREdfqdiSVPVQEDELSKVEESSEISPEPKTemktlrwaISQF--ASVERIVGEd 502
Cdd:pfam13423 127 PLEQLFGIDAETTIRCSNCGHESVRES-----STHVLDLIYPRKPSSNNKKPPNQT--------FSSIlkSSLERETTT- 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545498609  503 KYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLskintplltPLKLSLEEWSTKPTNDS---YGLF 579
Cdd:pfam13423 193 KAWCEKCKRYQPLESRRTVRNLPPVLSLNAALTNEEWRQLWKTPGWL---------PPEIGLTLSDDLQGDNEivkYELR 263
                         170       180
                  ....*....|....*....|...
gi 545498609  580 AVVMHSGITISSGHYTASVKVTD 602
Cdd:pfam13423 264 GVVVHIGDSGTSGHLVSFVKVAD 286
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
82-100 2.35e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 40.94  E-value: 2.35e-03
                         10
                 ....*....|....*....
gi 545498609  82 GLNNLGNTCYLNSILQVLY 100
Cdd:cd02664    1 GLINLGNTCYMNSVLQALF 19
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
81-112 3.15e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 40.33  E-value: 3.15e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 545498609   81 VGLNNLGNTCYLNSILQVLYFCPGF-KSGVKHL 112
Cdd:pfam13423   1 SGLETHIPNSYTNSLLQLLRFIPPLrNLALSHL 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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