NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|530402079|ref|XP_005266305|]
View 

A-kinase anchor protein 11 isoform X3 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
AKAP_110 super family cl14906
A-kinase anchor protein 110 kDa (AKAP 110); This family consists of several mammalian protein ...
 1759-1855 1.00e-05

A-kinase anchor protein 110 kDa (AKAP 110); This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction.


The actual alignment was detected with superfamily member smart00807:

Pssm-ID: 449376  Cd Length: 851  Bit Score: 50.79  E-value: 1.00e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530402079   1759 GQDGKTLLITNIDMEPCTVDPQLRIILQWLIASEAEVAELYF--HDSANKEFML-LSKQLQEKGWKVGDLLQAVLQYYEV 1835
Cdd:smart00807  749 GCLGPEVIVSNHNLTDTVQNKQLQAVLQWVAASELNVPILYFagDDEGIQEKLLqLSAKAVEKGYSVGEVLQSVLRYEKE 828

                            90       100
                    ....*....|....*....|..
gi 530402079   1836 MEKASSEERC--KSLFDWLLEN 1855
Cdd:smart00807  829 RQLDEAVGNVtrLQLLDWLMAN 850
 
Name Accession Description Interval E-value
AKAP_110 smart00807
A-kinase anchor protein 110 kDa; This family consists of several mammalian protein kinase A ...
 1759-1855 1.00e-05

A-kinase anchor protein 110 kDa; This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction.


Pssm-ID: 214827  Cd Length: 851  Bit Score: 50.79  E-value: 1.00e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530402079   1759 GQDGKTLLITNIDMEPCTVDPQLRIILQWLIASEAEVAELYF--HDSANKEFML-LSKQLQEKGWKVGDLLQAVLQYYEV 1835
Cdd:smart00807  749 GCLGPEVIVSNHNLTDTVQNKQLQAVLQWVAASELNVPILYFagDDEGIQEKLLqLSAKAVEKGYSVGEVLQSVLRYEKE 828

                            90       100
                    ....*....|....*....|..
gi 530402079   1836 MEKASSEERC--KSLFDWLLEN 1855
Cdd:smart00807  829 RQLDEAVGNVtrLQLLDWLMAN 850
AKAP_110 pfam05716
A-kinase anchor protein 110 kDa (AKAP 110); This family consists of several mammalian protein ...
 1764-1855 1.86e-05

A-kinase anchor protein 110 kDa (AKAP 110); This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction.


Pssm-ID: 428603  Cd Length: 692  Bit Score: 49.54  E-value: 1.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530402079  1764 TLLITNIDMEPCTVDPQLRIILQWLIASEAEVAELYF--HDSANKEFML-LSKQLQEKGWKVGDLLQAVLQY---YEVME 1837
Cdd:pfam05716  595 KVIVSNHNLTDTVQNKQLQAVLQWVAASELNVPILYFagDDEGIQEKLLqLSAAAVDKGRSVGEVLQSVLRYekeRQLDE 674

                           90
                   ....*....|....*...
gi 530402079  1838 KASSEERCKsLFDWLLEN 1855
Cdd:pfam05716  675 AVGNVTRLQ-LLDWLMVN 691
 
Name Accession Description Interval E-value
AKAP_110 smart00807
A-kinase anchor protein 110 kDa; This family consists of several mammalian protein kinase A ...
 1759-1855 1.00e-05

A-kinase anchor protein 110 kDa; This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction.


Pssm-ID: 214827  Cd Length: 851  Bit Score: 50.79  E-value: 1.00e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530402079   1759 GQDGKTLLITNIDMEPCTVDPQLRIILQWLIASEAEVAELYF--HDSANKEFML-LSKQLQEKGWKVGDLLQAVLQYYEV 1835
Cdd:smart00807  749 GCLGPEVIVSNHNLTDTVQNKQLQAVLQWVAASELNVPILYFagDDEGIQEKLLqLSAKAVEKGYSVGEVLQSVLRYEKE 828

                            90       100
                    ....*....|....*....|..
gi 530402079   1836 MEKASSEERC--KSLFDWLLEN 1855
Cdd:smart00807  829 RQLDEAVGNVtrLQLLDWLMAN 850
AKAP_110 pfam05716
A-kinase anchor protein 110 kDa (AKAP 110); This family consists of several mammalian protein ...
 1764-1855 1.86e-05

A-kinase anchor protein 110 kDa (AKAP 110); This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction.


Pssm-ID: 428603  Cd Length: 692  Bit Score: 49.54  E-value: 1.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530402079  1764 TLLITNIDMEPCTVDPQLRIILQWLIASEAEVAELYF--HDSANKEFML-LSKQLQEKGWKVGDLLQAVLQY---YEVME 1837
Cdd:pfam05716  595 KVIVSNHNLTDTVQNKQLQAVLQWVAASELNVPILYFagDDEGIQEKLLqLSAAAVDKGRSVGEVLQSVLRYekeRQLDE 674

                           90
                   ....*....|....*...
gi 530402079  1838 KASSEERCKsLFDWLLEN 1855
Cdd:pfam05716  675 AVGNVTRLQ-LLDWLMVN 691
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH