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Conserved domains on  [gi|578803032|ref|XP_005264509|]
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baculoviral IAP repeat-containing protein 6 isoform X6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UBCc_BIRC6 cd23810
Ubiquitin-conjugating enzyme E2, catalytic (UBCc)-like domain of baculoviral IAP ...
 4585-4789 1.29e-134

Ubiquitin-conjugating enzyme E2, catalytic (UBCc)-like domain of baculoviral IAP repeat-containing protein 6 (BIRC6) and related proteins; BIRC6, also BIR repeat-containing ubiquitin-conjugating enzyme (BRUCE), RING-type E3 ubiquitin transferase (EC 2.3.2.27) BIRC6, or ubiquitin-conjugating BIR domain enzyme apollon (APOLLON), is an anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase. It has an unusual ubiquitin conjugation system in that it could combine in a single polypeptide, ubiquitin conjugating (E2) with ubiquitin ligase (E3) activity, forming a chimeric E2/E3 ubiquitin ligase. Its targets include CASP9 and DIABLO/SMAC. BIRC6 acts as an inhibitor of CASP3, CASP7, and CASP9. BIRC6 is an important regulator for the final stages of cytokinesis. It is crucial for normal vesicle targeting to the site of abscission, but also for the integrity of the midbody and the midbody ring, and its striking ubiquitin modification.


:

Pssm-ID: 467430 [Multi-domain]  Cd Length: 205  Bit Score: 420.02  E-value: 1.29e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4585 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 4664
Cdd:cd23810     1 PARMRRLAKELASLSTSLPLSWSSSIFVRVDEERMDVMKALITGPEDTPYANGCFLFDIFFPPDYPQSPPKVNLLTTGGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4665 SVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 4744
Cdd:cd23810    81 SVRFNPNLYNDGKVCLSLLGTWSGPPGEKWNPGTSTLLQVLVSIQSLILVPEPYFNEPGYERSRGTPEGDAASREYNANI 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 578803032 4745 RQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIAD 4789
Cdd:cd23810   161 RYNTVRWAMLEQLRNPPPGFEDVIRTHFYLKREEILAQCEKWIAE 205
BIRC6 pfam12356
Baculoviral IAP repeat-containing protein 6; BIRC6 is an anti-apoptotic protein which can ...
 3476-3631 4.13e-90

Baculoviral IAP repeat-containing protein 6; BIRC6 is an anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase.


:

Pssm-ID: 463547  Cd Length: 161  Bit Score: 290.59  E-value: 4.13e-90
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  3476 VAAMKRSGRMNYMCPNSSTVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDQELFELLFNWSMSLPCNMVLKKAV 3555
Cdd:pfam12356    1 VAALKRSSPLGYIGPNASTREYGLLMPSPSHLHCVAAILWHSYELPVEYDLPALLNRELFELLYNWSMSLPCNSVLKKAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  3556 DSLLCSMCHVHPNYFSLLMGWMGITPPPVQCH-----HRLSMTDDSKKQDLSSSLTDDSKNAQAPLALTESHLATLASSS 3630
Cdd:pfam12356   81 DSLLCSMCHIHPSYFSLLMSWMGISVSPSSSQsnsqlHRLSMTDDGKKQHDLRSLTDDSKHARSHIALTESHLATLAAAS 160


                   .
gi 578803032  3631 Q 3631
Cdd:pfam12356  161 Q 161
BIR pfam00653
Inhibitor of Apoptosis domain; BIR stands for 'Baculovirus Inhibitor of apoptosis protein ...
 289-359 2.76e-28

Inhibitor of Apoptosis domain; BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteriztically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin.


:

Pssm-ID: 459891  Cd Length: 68  Bit Score: 110.06  E-value: 2.76e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578803032   289 RRETFTSWPHVGYRWAQPDPMAQAGFYHQPAssgDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVK 359
Cdd:pfam00653    1 RLATFENWPHSNKSPPTPEELAEAGFYYTGT---GDRVQCFYCGLELDGWEEGDDPWEEHKKHSPDCPFLK 68
Nsa1_WDR74-like super family cl45912
Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 ...
 901-974 3.55e-06

Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from fungi and WDR74 (WD repeat-containing protein 74) from mammals and plants, are homologous essential factors for ribosome assembly. In cooperation with the assembly factor Rix7/NVL2, Nsa1/WDR74 participates in an early cleavage of the pre-rRNA processing pathway. Rix7/NVL2 is a type II double ring, AAA-ATPase, that may mediate the release of Nsa1/WDR74 from nucleolar pre-60S particles. Nsa1/WDR74 contains an N-terminal seven-bladed beta-propeller WD40 domain that associates with the D1-AAA domain of the AAA-ATPase Rix7/NVL2, and a flexible lysine-rich C-terminus that extends outward from the WD40 domain, and is required for nucleolar localization.


The actual alignment was detected with superfamily member cd22858:

Pssm-ID: 459257  Cd Length: 399  Bit Score: 52.99  E-value: 3.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  901 GHLVITT-QGGYVKILDLS--------NFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCD 971
Cdd:cd22858    56 EKLLVARrLNGSVELYDLSkvpkfdeeEYELLHSIKGLLDDRSKAKDKFVSLIVLESLGIILAATKSGLVHIIDLEDDLF 135


                  ...
gi 578803032  972 DID 974
Cdd:cd22858   136 KIK 138
 
Name Accession Description Interval E-value
UBCc_BIRC6 cd23810
Ubiquitin-conjugating enzyme E2, catalytic (UBCc)-like domain of baculoviral IAP ...
 4585-4789 1.29e-134

Ubiquitin-conjugating enzyme E2, catalytic (UBCc)-like domain of baculoviral IAP repeat-containing protein 6 (BIRC6) and related proteins; BIRC6, also BIR repeat-containing ubiquitin-conjugating enzyme (BRUCE), RING-type E3 ubiquitin transferase (EC 2.3.2.27) BIRC6, or ubiquitin-conjugating BIR domain enzyme apollon (APOLLON), is an anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase. It has an unusual ubiquitin conjugation system in that it could combine in a single polypeptide, ubiquitin conjugating (E2) with ubiquitin ligase (E3) activity, forming a chimeric E2/E3 ubiquitin ligase. Its targets include CASP9 and DIABLO/SMAC. BIRC6 acts as an inhibitor of CASP3, CASP7, and CASP9. BIRC6 is an important regulator for the final stages of cytokinesis. It is crucial for normal vesicle targeting to the site of abscission, but also for the integrity of the midbody and the midbody ring, and its striking ubiquitin modification.


Pssm-ID: 467430 [Multi-domain]  Cd Length: 205  Bit Score: 420.02  E-value: 1.29e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4585 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 4664
Cdd:cd23810     1 PARMRRLAKELASLSTSLPLSWSSSIFVRVDEERMDVMKALITGPEDTPYANGCFLFDIFFPPDYPQSPPKVNLLTTGGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4665 SVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 4744
Cdd:cd23810    81 SVRFNPNLYNDGKVCLSLLGTWSGPPGEKWNPGTSTLLQVLVSIQSLILVPEPYFNEPGYERSRGTPEGDAASREYNANI 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 578803032 4745 RQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIAD 4789
Cdd:cd23810   161 RYNTVRWAMLEQLRNPPPGFEDVIRTHFYLKREEILAQCEKWIAE 205
BIRC6 pfam12356
Baculoviral IAP repeat-containing protein 6; BIRC6 is an anti-apoptotic protein which can ...
 3476-3631 4.13e-90

Baculoviral IAP repeat-containing protein 6; BIRC6 is an anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase.


Pssm-ID: 463547  Cd Length: 161  Bit Score: 290.59  E-value: 4.13e-90
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  3476 VAAMKRSGRMNYMCPNSSTVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDQELFELLFNWSMSLPCNMVLKKAV 3555
Cdd:pfam12356    1 VAALKRSSPLGYIGPNASTREYGLLMPSPSHLHCVAAILWHSYELPVEYDLPALLNRELFELLYNWSMSLPCNSVLKKAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  3556 DSLLCSMCHVHPNYFSLLMGWMGITPPPVQCH-----HRLSMTDDSKKQDLSSSLTDDSKNAQAPLALTESHLATLASSS 3630
Cdd:pfam12356   81 DSLLCSMCHIHPSYFSLLMSWMGISVSPSSSQsnsqlHRLSMTDDGKKQHDLRSLTDDSKHARSHIALTESHLATLAAAS 160


                   .
gi 578803032  3631 Q 3631
Cdd:pfam12356  161 Q 161
UQ_con pfam00179
Ubiquitin-conjugating enzyme; Proteins destined for proteasome-mediated degradation may be ...
 4615-4748 1.74e-31

Ubiquitin-conjugating enzyme; Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologs. TSG101 is one of several UBC homologs that lacks this active site cysteine.


Pssm-ID: 459701 [Multi-domain]  Cd Length: 139  Bit Score: 121.92  E-value: 1.74e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLYNDGKVCLSILNTWHgrpeekW 4694
Cdd:pfam00179   22 VDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTT-----KIYHPNVDSSGEVCLDILKDER------W 90

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 578803032  4695 NPqTSSFLQVLVSVQSLIlvAEPYfNEPGYERSRGTPSGtQSSREYDGNIRQAT 4748
Cdd:pfam00179   91 SP-ALTLEQVLLSIQSLL--SEPN-PEDPLNAEAAKLYR-KNREEFEKKVREYV 139
BIR pfam00653
Inhibitor of Apoptosis domain; BIR stands for 'Baculovirus Inhibitor of apoptosis protein ...
 289-359 2.76e-28

Inhibitor of Apoptosis domain; BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteriztically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin.


Pssm-ID: 459891  Cd Length: 68  Bit Score: 110.06  E-value: 2.76e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578803032   289 RRETFTSWPHVGYRWAQPDPMAQAGFYHQPAssgDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVK 359
Cdd:pfam00653    1 RLATFENWPHSNKSPPTPEELAEAGFYYTGT---GDRVQCFYCGLELDGWEEGDDPWEEHKKHSPDCPFLK 68
BIR cd00022
Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis ...
 287-360 2.76e-27

Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.


Pssm-ID: 237989  Cd Length: 69  Bit Score: 107.35  E-value: 2.76e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578803032  287 ANRRETFTSWPHvgYRWAQPDPMAQAGFYHQPAssgDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKG 360
Cdd:cd00022     1 EARLKTFKNWPI--SLKVTPEKLAEAGFYYTGR---GDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVLL 69
UBCc smart00212
Ubiquitin-conjugating enzyme E2, catalytic domain homologues; Proteins destined for ...
 4612-4722 1.49e-25

Ubiquitin-conjugating enzyme E2, catalytic domain homologues; Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.


Pssm-ID: 214562 [Multi-domain]  Cd Length: 145  Bit Score: 105.45  E-value: 1.49e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032   4612 VRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTgghsvRFNPNLYNDGKVCLSILNTwhgrpe 4691
Cdd:smart00212   20 YPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITK-----IYHPNVDSSGEICLDILKQ------ 88

                            90       100       110
                    ....*....|....*....|....*....|.
gi 578803032   4692 EKWNPqTSSFLQVLVSVQSliLVAEPYFNEP 4722
Cdd:smart00212   89 EKWSP-ALTLETVLLSLQS--LLSEPNPDSP 116
BIR smart00238
Baculoviral inhibition of apoptosis protein repeat; Domain found in inhibitor of apoptosis ...
 285-360 1.12e-22

Baculoviral inhibition of apoptosis protein repeat; Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.


Pssm-ID: 197595  Cd Length: 71  Bit Score: 94.31  E-value: 1.12e-22
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578803032    285 SEANRRETFTSWPHVgyrwAQPDP--MAQAGFYHQPASsgdDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKG 360
Cdd:smart00238    1 SEEARLKTFQNWPYN----SKCTPeqLAEAGFYYTGVG---DEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVRN 71
PTZ00390 PTZ00390
ubiquitin-conjugating enzyme; Provisional
 4615-4717 1.98e-11

ubiquitin-conjugating enzyme; Provisional


Pssm-ID: 240397  Cd Length: 152  Bit Score: 65.21  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwhgrpEEKW 4694
Cdd:PTZ00390   27 DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYH-----PNIDKLGRICLDIL-------KDKW 94

                          90       100
                  ....*....|....*....|....*.
gi 578803032 4695 NPQtssfLQ---VLVSVQSLILVAEP 4717
Cdd:PTZ00390   95 SPA----LQirtVLLSIQALLSAPEP 116
Nsa1 cd22858
Ribosome Biogenesis Protein Nsa1; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from ...
 901-974 3.55e-06

Ribosome Biogenesis Protein Nsa1; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from fungi is an essential factor for ribosome assembly. In cooperation with the assembly factor Rix7, Nsa1 participates in an early cleavage of the pre-rRNA processing pathway. Rix7 is a type II double ring, AAA-ATPase, that may mediate the release of Nsa1 from nucleolar pre-60S particles. The release of Nsa1 from a discrete preribosomal particle may trigger the progression of 60S ribosome biogenesis. Nsa1 is essential for cell viability in yeast. It contains an N-terminal seven-bladed beta-propeller WD40 domain that associates with the D1-AAA domain of the AAA-ATPase Rix7, and a flexible lysine-rich C-terminus that extends outward from the WD40 domain, and is required for nucleolar localization.


Pssm-ID: 439304  Cd Length: 399  Bit Score: 52.99  E-value: 3.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  901 GHLVITT-QGGYVKILDLS--------NFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCD 971
Cdd:cd22858    56 EKLLVARrLNGSVELYDLSkvpkfdeeEYELLHSIKGLLDDRSKAKDKFVSLIVLESLGIILAATKSGLVHIIDLEDDLF 135


                  ...
gi 578803032  972 DID 974
Cdd:cd22858   136 KIK 138
COG5078 COG5078
Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones];
4631-4686 3.90e-04

Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444052 [Multi-domain]  Cd Length: 146  Bit Score: 43.93  E-value: 3.90e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 578803032 4631 DTPYANGCFEFDVYFPQDYPSSPPLVNLettggHSVRFNPNLY-NDGKVCLSILNTW 4686
Cdd:COG5078    52 GGPTYGDTHRIEITLPESYPQAPPQVRW-----LTPIFHPNIYeAGGSVCIGRADHW 103
 
Name Accession Description Interval E-value
UBCc_BIRC6 cd23810
Ubiquitin-conjugating enzyme E2, catalytic (UBCc)-like domain of baculoviral IAP ...
 4585-4789 1.29e-134

Ubiquitin-conjugating enzyme E2, catalytic (UBCc)-like domain of baculoviral IAP repeat-containing protein 6 (BIRC6) and related proteins; BIRC6, also BIR repeat-containing ubiquitin-conjugating enzyme (BRUCE), RING-type E3 ubiquitin transferase (EC 2.3.2.27) BIRC6, or ubiquitin-conjugating BIR domain enzyme apollon (APOLLON), is an anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase. It has an unusual ubiquitin conjugation system in that it could combine in a single polypeptide, ubiquitin conjugating (E2) with ubiquitin ligase (E3) activity, forming a chimeric E2/E3 ubiquitin ligase. Its targets include CASP9 and DIABLO/SMAC. BIRC6 acts as an inhibitor of CASP3, CASP7, and CASP9. BIRC6 is an important regulator for the final stages of cytokinesis. It is crucial for normal vesicle targeting to the site of abscission, but also for the integrity of the midbody and the midbody ring, and its striking ubiquitin modification.


Pssm-ID: 467430 [Multi-domain]  Cd Length: 205  Bit Score: 420.02  E-value: 1.29e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4585 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 4664
Cdd:cd23810     1 PARMRRLAKELASLSTSLPLSWSSSIFVRVDEERMDVMKALITGPEDTPYANGCFLFDIFFPPDYPQSPPKVNLLTTGGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4665 SVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 4744
Cdd:cd23810    81 SVRFNPNLYNDGKVCLSLLGTWSGPPGEKWNPGTSTLLQVLVSIQSLILVPEPYFNEPGYERSRGTPEGDAASREYNANI 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 578803032 4745 RQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIAD 4789
Cdd:cd23810   161 RYNTVRWAMLEQLRNPPPGFEDVIRTHFYLKREEILAQCEKWIAE 205
BIRC6 pfam12356
Baculoviral IAP repeat-containing protein 6; BIRC6 is an anti-apoptotic protein which can ...
 3476-3631 4.13e-90

Baculoviral IAP repeat-containing protein 6; BIRC6 is an anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase.


Pssm-ID: 463547  Cd Length: 161  Bit Score: 290.59  E-value: 4.13e-90
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  3476 VAAMKRSGRMNYMCPNSSTVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDQELFELLFNWSMSLPCNMVLKKAV 3555
Cdd:pfam12356    1 VAALKRSSPLGYIGPNASTREYGLLMPSPSHLHCVAAILWHSYELPVEYDLPALLNRELFELLYNWSMSLPCNSVLKKAV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  3556 DSLLCSMCHVHPNYFSLLMGWMGITPPPVQCH-----HRLSMTDDSKKQDLSSSLTDDSKNAQAPLALTESHLATLASSS 3630
Cdd:pfam12356   81 DSLLCSMCHIHPSYFSLLMSWMGISVSPSSSQsnsqlHRLSMTDDGKKQHDLRSLTDDSKHARSHIALTESHLATLAAAS 160


                   .
gi 578803032  3631 Q 3631
Cdd:pfam12356  161 Q 161
UBCc_UBE2O cd23837
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 O ...
 4610-4789 1.06e-74

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 O and related proteins; The E2O subfamily includes mammalian ubiquitin-conjugating enzymes E2 O (UBE2O, EC 2.3.2.24), plant ubiquitin-conjugating enzyme E2 23-26 (UBC23-26, EC2.3.2.23) and E2 38-39 (UBC38-39, EC2.3.2.23), and similar proteins. UBE2O is an E2/E3 hybrid ubiquitin-protein ligase that displays both E2 and E3 ligase activities and mediates monoubiquitination of target proteins. Arabidopsis thaliana UBC proteins accept the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. UBC24, also called PHO2, mediates PHO1 degradation through multivesicular body-mediated vacuolar proteolysis in response to inorganic phosphate (Pi) availability. It negatively regulates the protein abundance of PHF1 and PHT1s under Pi-sufficient conditions by facilitating the degradation of PHT1 proteins at the endomembrane.


Pssm-ID: 467439 [Multi-domain]  Cd Length: 198  Bit Score: 248.24  E-value: 1.06e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4610 VFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVN-LETTGGhsvRFNPNLYNDGKVCLSILNTWHG 4688
Cdd:cd23837    22 IFVRAYEDRMDLLRALIVGPEGTPYEDGLFFFDIQLPPDYPNVPPKVHyHSWTGG---RLNPNLYEDGKVCLSLLGTWSG 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4689 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKwAMLEQIRNPSPCFKEVI 4768
Cdd:cd23837    99 KGTEKWTPKSSNLLQVLVSIQGLVLVKEPYYNEAGYDKQRGTQEGRENSRMYNEMAFLLSLQ-SMLHLLRNPPEGFEDEI 177

                         170       180
                  ....*....|....*....|.
gi 578803032 4769 HKHFYLKRVEIMAQCEEWIAD 4789
Cdd:cd23837   178 RSHFRKRGPRLLARLEAWLEG 198
UBCc_UBE2Z cd23809
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 Z ...
 4610-4750 2.21e-51

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 Z and related proteins; The E2Z subfamily includes mammalian ubiquitin-conjugating enzymes E2 Z (UBE2Z/HOYS7) and similar proteins. They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2Z, also called Uba6-specific E2 conjugating enzyme 1 (Use1), acts as a ubiquitin-conjugating enzyme that accept ubiquitin from the E1 complex and catalyzes the covalent attachment to other proteins. It is a specific substrate for UBA6, not charged with ubiquitin by UBE1. It may be involved in apoptosis regulation.


Pssm-ID: 467429  Cd Length: 151  Bit Score: 179.35  E-value: 2.21e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4610 VFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGr 4689
Cdd:cd23809    19 IFVAPDEEDITKVHALIIGPPDTPYEGGFFYFLLRFPPDYPISPPKVRLMTTGGGRVRFNPNLYANGKVCLSILGTWTG- 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578803032 4690 peEKWNPqTSSFLQVLVSVQSLiLVAEPYFNEPGYERSRgtpsGTQSSREYDGNIRQATVK 4750
Cdd:cd23809    98 --PAWSP-AQGLSSVLLSIQSL-MSENPYHNEPGFEQER----DPEDSERYNEKIRHETLR 150
UQ_con pfam00179
Ubiquitin-conjugating enzyme; Proteins destined for proteasome-mediated degradation may be ...
 4615-4748 1.74e-31

Ubiquitin-conjugating enzyme; Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologs. TSG101 is one of several UBC homologs that lacks this active site cysteine.


Pssm-ID: 459701 [Multi-domain]  Cd Length: 139  Bit Score: 121.92  E-value: 1.74e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLYNDGKVCLSILNTWHgrpeekW 4694
Cdd:pfam00179   22 VDDNLFEWKVTIIGPDGTPYEGGVFKLSVEFPEDYPFKPPKVKFTT-----KIYHPNVDSSGEVCLDILKDER------W 90

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 578803032  4695 NPqTSSFLQVLVSVQSLIlvAEPYfNEPGYERSRGTPSGtQSSREYDGNIRQAT 4748
Cdd:pfam00179   91 SP-ALTLEQVLLSIQSLL--SEPN-PEDPLNAEAAKLYR-KNREEFEKKVREYV 139
BIR pfam00653
Inhibitor of Apoptosis domain; BIR stands for 'Baculovirus Inhibitor of apoptosis protein ...
 289-359 2.76e-28

Inhibitor of Apoptosis domain; BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteriztically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin.


Pssm-ID: 459891  Cd Length: 68  Bit Score: 110.06  E-value: 2.76e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578803032   289 RRETFTSWPHVGYRWAQPDPMAQAGFYHQPAssgDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVK 359
Cdd:pfam00653    1 RLATFENWPHSNKSPPTPEELAEAGFYYTGT---GDRVQCFYCGLELDGWEEGDDPWEEHKKHSPDCPFLK 68
BIR cd00022
Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis ...
 287-360 2.76e-27

Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.


Pssm-ID: 237989  Cd Length: 69  Bit Score: 107.35  E-value: 2.76e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578803032  287 ANRRETFTSWPHvgYRWAQPDPMAQAGFYHQPAssgDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKG 360
Cdd:cd00022     1 EARLKTFKNWPI--SLKVTPEKLAEAGFYYTGR---GDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVLL 69
UBCc_UEV cd00195
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain/ubiquitin E2 variant (UEV) domain; ...
 4610-4712 3.21e-27

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain/ubiquitin E2 variant (UEV) domain; The family includes ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain and ubiquitin (Ub) E2 variant (UEV) domain. They belong to the ubiquitin-conjugating (UBC) superfamily that represents a structural domain with an alpha-beta(4)-alpha(3) core fold. E2 is part of the ubiquitin-mediated protein degradation pathway in which a thioester linkage forms between a conserved cysteine and the C-terminus of ubiquitin, and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thioester linkages without the use of E3s. Several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) contains the UEV domain, which lacks the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways.


Pssm-ID: 467407 [Multi-domain]  Cd Length: 112  Bit Score: 108.92  E-value: 3.21e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4610 VFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLYNDGKVCLSILNTwhgr 4689
Cdd:cd00195    18 ISVEPVDDDLFHWKATIKGPEGTPYEGGVFKLDIEFPDDYPFKPPKVRFLT-----PIYHPNVDPDGEICLDILKS---- 88

                          90       100
                  ....*....|....*....|...
gi 578803032 4690 peEKWNPqTSSFLQVLVSVQSLI 4712
Cdd:cd00195    89 --EGWSP-ALTLRSVLLSIQSLL 108
UBCc smart00212
Ubiquitin-conjugating enzyme E2, catalytic domain homologues; Proteins destined for ...
 4612-4722 1.49e-25

Ubiquitin-conjugating enzyme E2, catalytic domain homologues; Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.


Pssm-ID: 214562 [Multi-domain]  Cd Length: 145  Bit Score: 105.45  E-value: 1.49e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032   4612 VRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTgghsvRFNPNLYNDGKVCLSILNTwhgrpe 4691
Cdd:smart00212   20 YPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITK-----IYHPNVDSSGEICLDILKQ------ 88

                            90       100       110
                    ....*....|....*....|....*....|.
gi 578803032   4692 EKWNPqTSSFLQVLVSVQSliLVAEPYFNEP 4722
Cdd:smart00212   89 EKWSP-ALTLETVLLSLQS--LLSEPNPDSP 116
BIR smart00238
Baculoviral inhibition of apoptosis protein repeat; Domain found in inhibitor of apoptosis ...
 285-360 1.12e-22

Baculoviral inhibition of apoptosis protein repeat; Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.


Pssm-ID: 197595  Cd Length: 71  Bit Score: 94.31  E-value: 1.12e-22
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578803032    285 SEANRRETFTSWPHVgyrwAQPDP--MAQAGFYHQPASsgdDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKG 360
Cdd:smart00238    1 SEEARLKTFQNWPYN----SKCTPeqLAEAGFYYTGVG---DEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVRN 71
UBCc_UBE2R cd23803
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 ...
 4615-4722 2.89e-19

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 R1-R2 and related proteins; The E2R subfamily includes mammalian ubiquitin-conjugating enzymes E2 R1 (UBE2R1/UBCH3/CDC34, EC 2.3.2.23 and EC 2.3.2.24), and E2 R2 (UBE2R2/UBC3B/CDC34B, EC 2.3.2.23), which accept ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, UBE2R1 catalyzes 'Lys-48'-linked polyubiquitination. It also involved in the degradation of beta-catenin. In vitro, UBE2R2 catalyzes monoubiquitination and 'Lys-48'-linked polyubiquitination. It may be involved in the degradation of katenin.


Pssm-ID: 467423 [Multi-domain]  Cd Length: 170  Bit Score: 88.18  E-value: 2.89e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwHG------ 4688
Cdd:cd23803    24 DEDNLFEWEVAIFGPPNTLYEGGYFKAHMKFPPDYPYSPPSFRFLTKMWH-----PNVYENGDVCISIL---HPpvddpq 95

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 578803032 4689 ---RPEEKWNPqTSSFLQVLVSVQSLilvaepyFNEP 4722
Cdd:cd23803    96 sgeLPSERWNP-TQNVRTILLSVISL-------LNEP 124
UBCc_UBE2I cd23798
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 I ...
 4619-4722 3.36e-18

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 I and related proteins; The E2I subfamily includes mammalian ubiquitin-conjugating enzymes E2 I (UBE2I/UBC9/UBCE9, EC 2.3.2.-), yeast ubiquitin-conjugating enzyme E2-18 kDa (UBC9, EC2.3.2.-), and plant SUMO-conjugating enzyme 1 (SCE1/AHUS5, EC2.3.2.-). UBE2I, also called SUMO-conjugating enzyme UBC9, RING-type E3 SUMO transferase UBC9, SUMO-protein ligase, ubiquitin carrier protein 9, ubiquitin carrier protein I, or ubiquitin-protein ligase I, accepts the ubiquitin-like proteins SUMO1, SUMO2, SUMO3, SUMO4 and SUMO1P1/SUMO5 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2, CBX4 and ZNF451. It can catalyze the formation of poly-SUMO chains. It is necessary for sumoylation of FOXL2 and KAT5 and essential for nuclear architecture and chromosome segregation. UBE2I also sumoylates p53/TP53 at 'Lys-386' and mediates sumoylation of ERCC6 which is essential for its transcription-coupled nucleotide excision repair activity. Saccharomyces cerevisiae UBC9, also called SUMO-conjugating enzyme UBC9, RING-type E3 SUMO transferase UBC9, ubiquitin carrier protein 9, ubiquitin-conjugating enzyme E2-18 kDa, acts as an E2 ubiquitin-like--protein ligase that mediates SUMO/Smt3 attachment to septins and PCNA. It may be involved in degradation of S- (CLB5) and M-phase cyclins (CLB2). Arabidopsis thaliana SCE1, also called SUMO-conjugating enzyme SCE1, protein EMBRYO DEFECTIVE 1637, or protein hus5 homolog, is a SUMO-conjugating enzyme that accepts the SUMO proteins from the E1 SUMO-activating heterodimer SAE1/SAE2 and catalyzes its covalent attachment to other proteins with the E3 SUMO ligases SIZ1 and MMS21. It associates with SIZ1 for sumoylation of the transcription factor GTE3.


Pssm-ID: 467418 [Multi-domain]  Cd Length: 152  Bit Score: 84.51  E-value: 3.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4619 LDIMK--VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLYNDGKVCLSILNtwhgrPEEKWNP 4696
Cdd:cd23798    33 LDLLKweCGIPGKKGTPWEGGLYKLTMEFPEDYPSKPPKCKFDP-----PLFHPNVYPSGTVCLSILN-----EDKDWKP 102

                          90       100
                  ....*....|....*....|....*.
gi 578803032 4697 QTsSFLQVLVSVQSLIlvAEPYFNEP 4722
Cdd:cd23798   103 SI-TIKQILLGIQDLL--DEPNLDDP 125
UBCc_UBE2G2 cd23796
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 G2 ...
 4615-4717 4.94e-18

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 G2 and related proteins; The subfamily includes mammalian ubiquitin-conjugating enzymes E2 G2 (UBE2G2/UBC7), yeast E2 ubiquitin-conjugating enzyme 7 (UBC7) and similar proteins. They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. In vitro, UBE2G2 catalyzes 'Lys-48'-linked polyubiquitination. It is involved in endoplasmic reticulum-associated degradation (ERAD) and is required for sterol-induced ubiquitination of 3-hydroxy-3-methylglutaryl coenzyme A reductase and its subsequent proteasomal degradation. UBC7, also called ubiquitin-conjugating enzyme E2-18 kDa, functions in the degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system.


Pssm-ID: 467416 [Multi-domain]  Cd Length: 158  Bit Score: 84.25  E-value: 4.94e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTgghsvRFNPNLYNDGKVCLSILNTWHGRP---- 4690
Cdd:cd23796    25 SEDNFFEWEALIQGPEGTPFEGGVFPARLTFPKDYPLSPPKMKFTCE-----MFHPNIYPDGRVCISILHAPGDDPmgye 99

                          90       100
                  ....*....|....*....|....*....
gi 578803032 4691 --EEKWNPqTSSFLQVLVSVQSLIlvAEP 4717
Cdd:cd23796   100 ssSERWSP-VQSVEKILLSVVSML--AEP 125
UBCc_UBE2G1 cd23795
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 G1 ...
 4620-4722 5.57e-18

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 G1 and related proteins; The subfamily includes mammalian ubiquitin-conjugating enzymes E2 G1 (UBE2G1/UBC7/E217K), fission yeast ubiquitin-conjugating enzyme E2 15 (UBC15), plant ubiquitin-conjugating enzymes E2 7 (UBC7), E2 13 (UBC13) and E2 14 (UBC14). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. In vitro, UBE2G1 catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. It may be involved in the degradation of muscle-specific proteins and may mediate polyubiquitination of CYP3A4. Schizosaccharomyces pombe UBC15 has a role in the formation of chromatin structures that influence the localization of transcriptional silencing factors. Arabidopsis thaliana UBC7, UBC13 and UBC14 are involved in the formation of multiubiquitin chains. They signal the protein for selective degradation.


Pssm-ID: 467415  Cd Length: 155  Bit Score: 84.14  E-value: 5.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4620 DIMK--VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwHG--------- 4688
Cdd:cd23795    30 NIYEweVMIIGPPDTLYEGGFFKAELTFPDDYPNSPPKMKFITEMWH-----PNVYPDGDVCISIL---HPpgedkngye 101

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 578803032 4689 RPEEKWNP----QTssflqVLVSVQSLIlvAEPYFNEP 4722
Cdd:cd23795   102 KASERWLPihtvET-----ILISVISML--SDPNDESP 132
UBCc_UBE2A_2B cd23790
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzymes E2A, ...
 4620-4711 3.83e-16

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzymes E2A, E2B and related proteins; The E2A/2B subfamily includes mammalian ubiquitin-conjugating enzymes UBE2A/RAD6A and UBE2B/RAD6B, yeast ubiquitin-conjugating enzyme E2 2 (UBC2/RAD6), plant ubiquitin-conjugating enzyme E2 1-3 (UBC1-3), and similar proteins. They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. Both UBE2A/RAD6A and UBE2B/RAD6B are required for post-replication repair of UV-damaged DNA. In vitro, they catalyze 'Lys-11', as well as 'Lys-48'-linked polyubiquitination. UBE2B might also catalyze 'Lys-63'-linked polyubiquitination. Saccharomyces cerevisiae UBC2 is required for DNA repair, damage-induced mutagenesis, and sporulation.


Pssm-ID: 467410  Cd Length: 143  Bit Score: 78.32  E-value: 3.83e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4620 DIMK--VLITGPADTPYANGCFEFDVYFPQDYPSSPPlvnlettgghSVRF-----NPNLYNDGKVCLSILntwhgrpEE 4692
Cdd:cd23790    30 NIMVwnAVIFGPEDTPWEGGTFKLRLEFSEEYPNKPP----------KVRFvskmfHPNVYADGSICLDIL-------QN 92

                          90
                  ....*....|....*....
gi 578803032 4693 KWNPqTSSFLQVLVSVQSL 4711
Cdd:cd23790    93 RWSP-TYDVSAILTSIQSL 110
UBCc_UBE2F_UBE2M cd23794
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzymes E2 F, ...
 4615-4722 4.42e-16

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzymes E2 F, E2 M and related proteins; The E2F/E2M subfamily includes mammalian ubiquitin-conjugating enzymes E2 F (UBE2F/NCE2, EC 2.3.2.32) and E2 M (UBE2M/UBC12, EC 2.3.2.34), yeast NEDD8-conjugating enzyme UBC12 (EC 2.3.2.24), plant RUB1-conjugating enzyme 1-2 (RCE1/UBC12 and RCE2/UBC12L, EC 2.3.2.-), and similar proteins. UBE2F (also called EDD8-conjugating enzyme UBE2F, NEDD8 carrier protein UBE2F, NEDD8 protein ligase UBE2F, NEDD8-conjugating enzyme 2, or RING-type E3 NEDD8 transferase UBE2F) and UBE2M (also called NEDD8-conjugating enzyme UBC12, or NEDD8 carrier protein) accept the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The RBX2-UBE2F complex neddylates specific target proteins, such as CUL5. The RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. UBE2M is involved in cell proliferation. Saccharomyces cerevisiae UBC12 and Arabidopsis thaliana RCE1/RCE2 accept the ubiquitin-like protein NEDD8/RUB1 from the UBA3-ULA1 E1 complex and the ECR1-AXR1 E1 complex, respectively.


Pssm-ID: 467414  Cd Length: 138  Bit Score: 77.99  E-value: 4.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4615 DEERLDIMKVLITgPADTPYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLYNDGKVCLSILntwhgrpEEKW 4694
Cdd:cd23794    25 DPNDLLKFEVTIT-PDEGYYKGGTFVFEIDIPDNYPFEPPKVKCLT-----KIYHPNIDEEGNVCLNIL-------REDW 91

                          90       100
                  ....*....|....*....|....*...
gi 578803032 4695 NPqTSSFLQVLVSVQSLILvaEPYFNEP 4722
Cdd:cd23794    92 KP-VLSLKDVILGLLFLFL--EPNPDDP 116
UBCc_ApmR795-like cd23833
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Acanthamoeba polyphaga mimivirus ...
 4623-4717 7.16e-16

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Acanthamoeba polyphaga mimivirus bifunctional E2/E3 enzyme R795 and related proteins; R795 (EC 2.3.2.23/EC 2.3.2.27) is a bifunctional enzyme which acts as an E2 ubiquitin-conjugating enzyme that catalyzes the covalent attachment of ubiquitin to other proteins. It also acts as a RING-type E3 ubiquitin-protein transferase.


Pssm-ID: 467438 [Multi-domain]  Cd Length: 117  Bit Score: 76.50  E-value: 7.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4623 KVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILNtwhgrpeEKWNPQTsSFL 4702
Cdd:cd23833    31 KVLMEGPEGTPYEGGVFLLYVEFPEEYPVKPPEVRFITPIYH-----CNINSDGRICHSILD-------RNYTPDT-TMR 97

                          90
                  ....*....|....*
gi 578803032 4703 QVLVSVQSLILVAEP 4717
Cdd:cd23833    98 EILDAVYGLLLTPEP 112
UBCc_SpUBC14-like cd23815
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Schizosaccharomyces pombe UBC14 ...
 4623-4717 5.11e-15

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Schizosaccharomyces pombe UBC14 and related proteins; Schizosaccharomyces pombe UBC14 (EC 2.3.2.23), also called ubiquitin-conjugating enzyme E2 14, E2 ubiquitin-conjugating enzyme 14, ubiquitin carrier protein 14, or ubiquitin-protein ligase 14, acts as a ubiquitin-conjugating enzyme that catalyzes the covalent attachment of ubiquitin to other proteins. It mediates the selective degradation of short-lived and abnormal proteins.


Pssm-ID: 467435  Cd Length: 143  Bit Score: 75.02  E-value: 5.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4623 KVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILNTwhgrpeEKWNPqTSSFL 4702
Cdd:cd23815    31 KGTILGPVGSPYEGGIFKFKITFPEDYPFKPPTVKFTTKIYH-----PNVDDDGSICLGILKS------DAWKP-SIKLV 98

                          90
                  ....*....|....*
gi 578803032 4703 QVLVSVQSLIlvAEP 4717
Cdd:cd23815    99 SVLNALLDLL--EEP 111
UBCc_UBE2D cd23792
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 ...
 4626-4717 6.01e-14

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 D1-D3 and related proteins; The E2D family includes mammalian ubiquitin-conjugating enzyme E2 D1-4 (UBE2D1/SFT/UBC5A/UBCH5/UBCH5A, UBE2D2/PUBC1/UBC4/UBC5B/UBCH4/UBCH5B, UBE2D3/UBC5C/UBCH5C, UBE2D4/HBUCE1/UBCH5D), yeast E2 ubiquitin-conjugating enzyme 4 (UBC4) and 5 (UBC5), as well as plant counterpart ubiquitin-conjugating enzyme E2 8-12 (UBC8/UBCAT4A, UBC9/UBCAT4B, UBC10-12) and 28-30 (UBC28-30). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. In vitro, UBE2D1-3 (EC 2.3.2.23 and EC 2.3.2.24) catalyze 'Lys-48'-linked polyubiquitination. UBE2D3 also catalyzes 'Lys-11'-linked polyubiquitination. In vitro, UBE2D4 can promote polyubiquitination using all 7 ubiquitin Lys residues but may prefer 'Lys-11' and 'Lys-48'-linked polyubiquitination. Saccharomyces cerevisiae UBC4-5 and Arabidopsis thaliana UBC8-11 mediates the selective degradation of short-lived and abnormal proteins.


Pssm-ID: 467412  Cd Length: 143  Bit Score: 71.91  E-value: 6.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4626 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILNtwhgrpeEKWNPQ-TSSflQV 4704
Cdd:cd23792    35 IMGPPDSPYQGGVFFLNIHFPTDYPFKPPKVAFTTKIYH-----PNINSNGSICLDILK-------DQWSPAlTIS--KV 100

                          90
                  ....*....|...
gi 578803032 4705 LVSVQSLILVAEP 4717
Cdd:cd23792   101 LLSICSLLTDPNP 113
UBCc_UBE2N cd23813
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 N ...
 4615-4712 6.98e-14

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 N and related proteins; The E2N subfamily includes mammalian ubiquitin-conjugating enzymes E2 N (UBE2N/UBCH13/UBC13/BLU), yeast ubiquitin-conjugating enzyme E2 13 (UBC13), and plant ubiquitin-conjugating enzyme E2 35-36 (UBC35/UBC13A/UBG13A, UBC36/UBC13B/UBG13B), which function as ubiquitin-conjugating enzymes (EC 2.3.2.23). UBE2N, also called Bendless-like ubiquitin-conjugating enzyme, forms heterodimers with UBE2V1 and UBE2V2, respectively. The UBE2V1/UBE2N and UBE2V2/UBE2N heterodimers catalyze the synthesis of non-canonical 'Lys-63'-linked polyubiquitin chains. This type of polyubiquitination does not lead to protein degradation by the proteasome. UBE2N also plays a role in the control of progress through the cell cycle and differentiation, as well as in the error-free DNA repair pathway, and contributes to the survival of cells after DNA damage. Saccharomyces cerevisiae UBC13 has a role in the DNA error-free post-replication repair (PRR) pathway. The UBC13/MMS2 heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. Arabidopsis thaliana UBC35 and UBC36 catalyze the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. They mediate transcriptional activation of target genes. They are required for post-replication repair of UV-damaged DNA and for adapting root developmental programs to suboptimal availability of iron.


Pssm-ID: 467433  Cd Length: 144  Bit Score: 71.84  E-value: 6.98e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwhgrpEEKW 4694
Cdd:cd23813    25 DEDNLRYFDVVIDGPPDSPYEGGVFKLELFLPEEYPMAPPKVRFLTKIYH-----PNIDKLGRICLDIL-------KDKW 92

                          90       100
                  ....*....|....*....|.
gi 578803032 4695 NPQtssfLQ---VLVSVQSLI 4712
Cdd:cd23813    93 SPA----LQirtVLLSIQALL 109
UBCc_UBE2T cd23805
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 T ...
 4612-4717 1.12e-13

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 T and related enzymes; The E2T subfamily includes mammalian ubiquitin-conjugating enzymes E2 T (UBE2T/HSPC150/PIG50), plant ubiquitin-conjugating enzyme E2 37 (UBC37), and similar proteins. They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2T, also called cell proliferation-inducing gene 50 protein, catalyzes monoubiquitination. It is involved in mitomycin-C (MMC)-induced DNA repair. It acts as a specific E2 ubiquitin-conjugating enzyme for the Fanconi anemia complex by associating with E3 ubiquitin-protein ligase FANCL and catalyzing monoubiquitination of FANCD2, a key step in the DNA damage pathway. UBE2T also mediates monoubiquitination of FANCL and FANCI. It may contribute to ubiquitination and degradation of BRCA1. In vitro, UBE2T can promote polyubiquitination using all 7 ubiquitin Lys residues, but may prefer 'Lys-11'-, 'Lys-27'-, 'Lys-48'- and 'Lys-63'-linked polyubiquitination.


Pssm-ID: 467425  Cd Length: 146  Bit Score: 71.40  E-value: 1.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4612 VRC--DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILNTwhgR 4689
Cdd:cd23805    18 ISCwpKDDSLDELEAQIQGPEGTPYEGGVFKLEITIPERYPFEPPKVRFLTPIYH-----PNIDSAGRICLDILKM---P 89

                          90       100
                  ....*....|....*....|....*...
gi 578803032 4690 PEEKWNPqTSSFLQVLVSVQSLIlvAEP 4717
Cdd:cd23805    90 PKGSWKP-SLNISTVLTSIRLLL--AEP 114
UEV_Morgue-like cd23826
ubiquitin E2 variant (UEV) domain of Drosophila melanogaster Morgue and related proteins; ...
 4612-4722 2.83e-13

ubiquitin E2 variant (UEV) domain of Drosophila melanogaster Morgue and related proteins; Morgue is an F-box/ubiquitin conjugase domain protein important for grim-reaper mediated apoptosis. It contains both an F-box and a UEV domain that is homologous to E2 ubiquitin ligases but lacks the conserved cysteine residue required for catalytic activity.


Pssm-ID: 467436 [Multi-domain]  Cd Length: 147  Bit Score: 70.34  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4612 VRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwhgrpE 4691
Cdd:cd23826    24 ARPLDRSLLHLLATIEGPPGSPYEGGIFFLRIQIPESYPFRPPKVRFLTKIYH-----PNISRHGDICLDIL-------E 91

                          90       100       110
                  ....*....|....*....|....*....|.
gi 578803032 4692 EKWNPQTsSFLQVLVSVQSLIlvAEPYFNEP 4722
Cdd:cd23826    92 HNWSLAL-TIEKVLISIQSLL--TDPYLEDP 119
UBCc_UBE2E cd23793
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 ...
 4626-4718 3.81e-12

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 E1-E3 and related proteins; The E2E subfamily includes mammalian ubiquitin-conjugating enzyme E2 E1-3 (UBE2E1/UBCH6, UBE2E2/UBCH8, UBE2E3/UBCH9) and similar proteins. UBE2E, also known as (E3-independent) E2 ubiquitin-conjugating enzyme E, or E2 ubiquitin-conjugating enzyme E, accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. UBE2E1 (EC 2.3.2.23 and EC 2.3.2.24) catalyzes the covalent attachment of ISG15 to other proteins. It mediates the selective degradation of short-lived and abnormal proteins. In vitro, it also catalyzes 'Lys-48'-linked polyubiquitination. In vitro, both UBE2E2 (EC 2.3.2.23) and UBE2E3 (EC 2.3.2.23) catalyze 'Lys-11'- and 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. UBE2E2 catalyzes the ISGylation of influenza A virus NS1 protein. UBE2E3 participates in the regulation of trans-epithelial sodium transport in renal cells. It may be involved in cell growth arrest.


Pssm-ID: 467413  Cd Length: 141  Bit Score: 66.63  E-value: 3.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4626 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSvrfnpNLYNDGKVCLSILntwhgrpEEKWNPQ-TSSflQV 4704
Cdd:cd23793    34 ILGPPGSVYEGGVFFLDIHFPPDYPFKPPKVTFRTRIYHC-----NINSQGVICLDIL-------KDNWSPAlTIS--KV 99

                          90
                  ....*....|....
gi 578803032 4705 LVSVQSLILVAEPY 4718
Cdd:cd23793   100 LLSICSLLTDCNPA 113
UBCc_UBE2C cd23791
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 C ...
 4626-4717 6.89e-12

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 C and related proteins; The E2C family includes mammalian ubiquitin-conjugating enzyme E2 C (UBE2C/UBCH10), yeast E2 ubiquitin-conjugating enzyme 11 (UBC11), plant ubiquitin-conjugating enzyme E2 19 (UBC19) and 20 (UBC20). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2C, also known as (E3-independent) E2 ubiquitin-conjugating enzyme C (EC 2.3.2.24), E2 ubiquitin-conjugating enzyme C, ubiquitin carrier protein C, or ubiquitin-protein ligase C, catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination in vitro. It is a ubiquitin carrier protein required for the destruction of mitotic cyclins and proteins that maintain sister chromatid cohesion in animal cells and in Schizosaccharomyces pombe. In Saccharomyces cerevisiae, UBC11 is not essential for mitotic cyclin destruction. Arabidopsis thaliana UBC19 is part of the anaphase-promoting complex (APC). It may have a key function during cell cycle and be involved in cyclin B1 degradation.


Pssm-ID: 467411  Cd Length: 140  Bit Score: 66.05  E-value: 6.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4626 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGghsvrFNPNLYNDGKVCLSILntwhgrpEEKWNPqTSSFLQVL 4705
Cdd:cd23791    35 ITGPEGTVYEGLKYKLSLEFPSNYPYKAPTVKFETPC-----FHPNVDQHGNICLDIL-------KEKWSA-LYDVRTIL 101

                          90
                  ....*....|..
gi 578803032 4706 VSVQSLIlvAEP 4717
Cdd:cd23791   102 LSIQSLL--GEP 111
PTZ00390 PTZ00390
ubiquitin-conjugating enzyme; Provisional
 4615-4717 1.98e-11

ubiquitin-conjugating enzyme; Provisional


Pssm-ID: 240397  Cd Length: 152  Bit Score: 65.21  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4615 DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwhgrpEEKW 4694
Cdd:PTZ00390   27 DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYH-----PNIDKLGRICLDIL-------KDKW 94

                          90       100
                  ....*....|....*....|....*.
gi 578803032 4695 NPQtssfLQ---VLVSVQSLILVAEP 4717
Cdd:PTZ00390   95 SPA----LQirtVLLSIQALLSAPEP 116
PLN00172 PLN00172
ubiquitin conjugating enzyme; Provisional
 4626-4717 3.02e-11

ubiquitin conjugating enzyme; Provisional


Pssm-ID: 177768 [Multi-domain]  Cd Length: 147  Bit Score: 64.39  E-value: 3.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4626 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILntwhgrpEEKWNPQTsSFLQVL 4705
Cdd:PLN00172   37 IIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYH-----PNINSNGSICLDIL-------RDQWSPAL-TVSKVL 103

                          90
                  ....*....|..
gi 578803032 4706 VSVQSLILVAEP 4717
Cdd:PLN00172  104 LSISSLLTDPNP 115
UBCc_invertebrate cd23955
ubiquitin-conjugating enzyme family protein; This subfamily includes ubiquitin-conjugating ...
 4620-4713 3.95e-11

ubiquitin-conjugating enzyme family protein; This subfamily includes ubiquitin-conjugating enzyme E2, catalytic (UBCc) domains mostly found in non-vertebrate eukaryotes. They belong to the ubiquitin-conjugating (UBC) superfamily that represents a structural domain with an alpha-beta(4)-alpha(3) core fold. E2 is part of the ubiquitin-mediated protein degradation pathway in which a thioester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thioester linkages without the use of E3s.


Pssm-ID: 467440 [Multi-domain]  Cd Length: 120  Bit Score: 63.04  E-value: 3.95e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4620 DIMK--VLITGPADtPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSIL---NTWHGRPEEKW 4694
Cdd:cd23955    26 DLFEwhVNIRGPDG-PYSGVILHLELTFPEDYPNSPPSVRLLTPLPH-----PNVFTGNYICLDMLenfAKHHSKPYSGW 99

                          90
                  ....*....|....*....
gi 578803032 4695 NPQTsSFLQVLVSVQSLIL 4713
Cdd:cd23955   100 SPAY-TVQSILLQLQAFLF 117
UBCc_ScCDC34-like cd23811
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Saccharomyces cerevisiae CDC34 and ...
 4631-4722 9.25e-11

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Saccharomyces cerevisiae CDC34 and related proteins; Saccharomyces cerevisiae CDC34 (EC 2.3.2.23), also called ubiquitin-conjugating enzyme E2-34 kDa, cell division control protein 34, E2 ubiquitin-conjugating enzyme 3 (UBC3), DNA6, or ubiquitin ligase complex SCF subunit CDC34, catalyzes the covalent attachment of ubiquitin to other proteins. In vitro, it may ubiquitinate histone H2A. CDC34 mediates the initiation of DNA replication (transition of G1 to S phase in cell cycle). It is the catalytic subunit of an SCF ubiquitin-protein ligase complex (together with Skp1p, Rbx1p, CDC53, and an F-box protein) that regulates cell cycle progression by targeting key substrates for degradation. Moreover, CDC34 is involved in the regulation of methionine biosynthesis genes and in the degradation of CDC6 together with CDC4 and CDC53.


Pssm-ID: 467431  Cd Length: 170  Bit Score: 63.61  E-value: 9.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4631 DTPYANGCFEFDVYFPQDYPSSPPlvnlettgghSVRFN-----PNLYNDGKVCLSILNTwHGRPE-------EKWNP-Q 4697
Cdd:cd23811    43 DSIYNGGYFKAEMVFPRDYPFSPP----------SFRFLppifhPNVYPDGRLCISILHS-PGDDYqsgepaaERWSPaQ 111

                          90       100
                  ....*....|....*....|....*
gi 578803032 4698 TSSflQVLVSVQSLIlvAEPYFNEP 4722
Cdd:cd23811   112 TVE--SVLLSILSLL--EDPNINSP 132
UBCc_UBE2K cd23800
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 K ...
 4610-4717 1.06e-10

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 K and related proteins; The E2J subfamily includes mammalian ubiquitin-conjugating enzymes E2 K (UBE2K/HIP2/LIG), yeast ubiquitin-conjugating enzyme E2 1 (UBC1), and plant ubiquitin-conjugating enzyme E2 27 (UBC27). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2K is also called huntingtin-interacting protein 2 (HIP-2), ubiquitin-conjugating enzyme E2-25 kDa, or ubiquitin-conjugating enzyme E2(25K). In vitro, in the presence or absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, UBE2K catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. It does not transfer ubiquitin directly, but elongates monoubiquitinated substrate proteins. Saccharomyces cerevisiae UBC1, also called ubiquitin-conjugating enzyme E2-24 kDa, functions in the degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. It is a cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).


Pssm-ID: 467420  Cd Length: 145  Bit Score: 62.57  E-value: 1.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4610 VFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYND-GKVCLSILNTwhg 4688
Cdd:cd23800    21 IKVELVGDDLTHLKGEIAGPPDTPYEGGTFVLDIKIPDTYPFEPPKMKFITKIWH-----PNISSQtGAICLDILKD--- 92

                          90       100       110
                  ....*....|....*....|....*....|...
gi 578803032 4689 rpeeKWNP----QTssflqVLVSVQSLILVAEP 4717
Cdd:cd23800    93 ----QWSPaltlRT-----ALLSIQALLSAPEP 116
UBCc_ScPEX4-like cd23812
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Saccharomyces cerevisiae Peroxin-4 ...
 4610-4717 3.52e-10

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Saccharomyces cerevisiae Peroxin-4 (PEX4) protein and related proteins; Saccharomyces cerevisiae PEX4 (EC 2.3.2.23), also called ubiquitin-conjugating enzyme E2-21 kDa, UBC10, or PAS2, acts as a ubiquitin-conjugating enzyme that catalyzes the covalent attachment of ubiquitin to other proteins. It is essential for peroxisome biogenesis and is required for UBC4-independent ubiquitination of PEX5. This subfamily also includes Arabidopsis thaliana PEX4 (also known as UBC21, EC 2.3.2.23) that is required for peroxisome biogenesis. It is necessary for the developmental elimination of obsolete peroxisome matrix proteins. It may be involved in the ubiquitination of PEX5, targeting it for recycling.


Pssm-ID: 467432 [Multi-domain]  Cd Length: 145  Bit Score: 61.41  E-value: 3.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4610 VFVRCDEERlDIM--KVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTgghsvRFNPNL-YNDGKVCLSILNTw 4686
Cdd:cd23812    19 IVLGPVEDD-DLFrwEAVIKGPKDTPYEGGRFELAIQVPSNYPISPPKVKFVTK-----IFHPNVhFKTGEICLDILKT- 91

                          90       100       110
                  ....*....|....*....|....*....|.
gi 578803032 4687 hgrpeeKWNPqTSSFLQVLVSVQSLILVAEP 4717
Cdd:cd23812    92 ------AWSP-AWTLQSVCRAILALLSDPEP 115
UBCc_UBE2J cd23799
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 J1, ...
 4625-4711 7.44e-09

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 J1, J2 and related proteins; The E2J subfamily includes mammalian ubiquitin-conjugating enzymes E2 J1 (UBE2J1/HSPC153/HSPC205/NCUBE1) and J2 (UBE2J2/NCUBE1), yeast ubiquitin-conjugating enzyme E2 6 (UBC6/DOA2), and plant ubiquitin-conjugating enzyme E2 32-34 (UBC32-34). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2J1 and UBE2J2 are non-canonical ubiquitin-conjugating enzyme (NCUBE), which function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD). Saccharomyces cerevisiae UBC6 functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. It is a cognate E2 conjugating enzyme for the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains.


Pssm-ID: 467419  Cd Length: 134  Bit Score: 57.09  E-value: 7.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4625 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGhsvRFNPNLyndgKVCLSILNtWHgrPEEkWNPqTSSFLQV 4704
Cdd:cd23799    33 TIRGPPDTPYEGGIYHGKIVFPPDYPFKPPSIYMLTPNG---RFETNT----KICLSISS-FH--PES-WNP-AWSIRTI 100


                  ....*..
gi 578803032 4705 LVSVQSL 4711
Cdd:cd23799   101 LIGLLSF 107
UBCc_UBE2S cd23804
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 S ...
 4610-4683 3.74e-08

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 S and related domains; The E2S subfamily includes mammalian ubiquitin-conjugating enzymes E2 S (UBE2S/E2EPF), plant ubiquitin-conjugating enzyme E2 22 (UBC22), and similar proteins. They are ubiquitin-conjugating enzymes (EC2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2S catalyzes 'Lys-11'-linked polyubiquitination. It acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. UBE2S acts by specifically elongating 'Lys-11'-linked polyubiquitin chains initiated by the E2 enzyme UBE2C/UBCH10 on APC/C substrates, enhancing the degradation of APC/C substrates by the proteasome and promoting mitotic exit. It also acts by elongating ubiquitin chains initiated by the E2 enzyme UBE2D1/UBCH5 in vitro; it is however unclear whether UBE2D1/UBCH5 acts as an E2 enzyme for the APC/C in vivo. UBE2S is also involved in ubiquitination and subsequent degradation of VHL, resulting in an accumulation of HIF1A. In vitro, it can promote polyubiquitination using all 7 ubiquitin Lys residues, except 'Lys-48'-linked polyubiquitination.


Pssm-ID: 467424  Cd Length: 146  Bit Score: 55.56  E-value: 3.74e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578803032 4610 VFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTgghsvRFNPNLYNDGKVCLSIL 4683
Cdd:cd23804    22 IRVIPNEEDLTDIQAEIEGPEGTPYEGGVFRVKLVLGPDFPASPPKGYFLTK-----IFHPNVSPTGEICVNTL 90
UBCc_UBE2L3 cd23801
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 L3, ...
 4612-4723 9.48e-08

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 L3, L5, L6 and related proteins; The E2L3-like subfamily includes mammalian ubiquitin-conjugating enzymes E2 L3 (UBE2L3/UBCH7/UBCE7), L5 (UBE2L5), L6 (UBE2L6/UBCH8), and similar proteins. They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2L3 specifically acts with HECT-type and RBR family E3 ubiquitin-protein ligases. It does not function with most RING-containing E3 ubiquitin-protein ligases because it lacks intrinsic E3-independent reactivity with lysine: in contrast, it has activity with the RBR family E3 enzymes, such as PRKN and ARIH1, that function like RING-HECT hybrids. In vitro, UBE2L3 catalyzes 'Lys-11'-linked polyubiquitination. It is involved in the selective degradation of short-lived and abnormal proteins. In addition to ubiquitin, UBE2L6 also catalyzes the covalent attachment of ISG15 to other proteins. It functions in the E6/E6-AP-induced ubiquitination of p53/TP53. It promotes ubiquitination and subsequent proteasomal degradation of FLT3.


Pssm-ID: 467421  Cd Length: 147  Bit Score: 54.19  E-value: 9.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4612 VRCDEERLDIMKVLITgPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHsvrfnPNLYNDGKVCLSILNTwhgrpe 4691
Cdd:cd23801    23 LSVDESNVLKWTGLLV-PDNPPYNKGAFRIEITFPAEYPFKPPKITFKTKIYH-----PNVDEKGQVCLPIISP------ 90

                          90       100       110
                  ....*....|....*....|....*....|...
gi 578803032 4692 EKWNPQTSSfLQVLvsvQSLI-LVAEPYFNEPG 4723
Cdd:cd23801    91 ENWKPATKI-DQVL---QALLaLINDPEPEHPL 119
UBCc_TcUBE-like cd23828
Ubiquitin-conjugating enzyme E2, putative catalytic (UBCc) domain of Trypanosoma cruzi ...
 4623-4708 6.75e-07

Ubiquitin-conjugating enzyme E2, putative catalytic (UBCc) domain of Trypanosoma cruzi putative ubiquitin-conjugating enzyme E2 and related proteins; This subfamily includes uncharacterized Trypanosoma cruzi putative ubiquitin-conjugating enzyme E2 and similar proteins. They may function as ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins.


Pssm-ID: 467437  Cd Length: 121  Bit Score: 51.23  E-value: 6.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4623 KVLITGPADT-PYANGCFEFDVYFPQDYPSSPPLVNLETtgghsVRFNPNLYNDGKVCLSILntwhgrpEEKWNPQTSSF 4701
Cdd:cd23828    39 RVVVKPPANSiVYAGNTYELLVIFSDDYPHEPPKVRFLT-----PIYSPLVSPEGSVCERLL-------EDDWKPTQHAA 106

                          90
                  ....*....|
gi 578803032 4702 ---LQVLVSV 4708
Cdd:cd23828   107 daiELVLNKI 116
UEV_AKTIP cd23814
ubiquitin E2 variant (UEV) domain of AKT-interacting protein and related proteins; AKTIP, ...
 4633-4710 9.22e-07

ubiquitin E2 variant (UEV) domain of AKT-interacting protein and related proteins; AKTIP, also called Ft1, or fused toes protein homolog, is a component of the FTS/Hook/FHIP complex (FHF complex), which may function to promote vesicle trafficking and/or fusion via the homotypic vesicular protein sorting complex (the HOPS complex). AKTIP regulates apoptosis by enhancing phosphorylation and activation of AKT1. It increases release of TNFSF6 via the AKT1/GSK3B/NFATC1 signaling cascade. AKTIP contains a UEV domain that is homologous to E2 ubiquitin ligases but lacks the conserved cysteine residue required for catalytic activity.


Pssm-ID: 467434  Cd Length: 112  Bit Score: 50.63  E-value: 9.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4633 PYANGCFEFDVYFPQDYPSSPPlvnlettgghSVRFNPNLY------NDGKVCLSilntwhgRPEEKWNPQTSSFLQVLV 4706
Cdd:cd23814    40 LYKGGIFRFTISIPDNYPDGPP----------RVTFLSPVFhplvdpQTGELDLS-------RAFPKWRPGKHHIWHVLN 102


                  ....
gi 578803032 4707 SVQS 4710
Cdd:cd23814   103 YLKR 106
UBCc_UBE2W cd23808
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 W ...
 4611-4711 1.72e-06

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin conjugating enzyme E2 W and related enzymes; The E2W subfamily includes mammalian ubiquitin-conjugating enzymes E2 W (UBE2W/UBC16), plant ubiquitin-conjugating enzyme E2 15-18 (UBC15-18), and similar proteins. They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2W, also called FLJ11011, E2 ubiquitin-conjugating enzyme W, N-terminal E2 ubiquitin-conjugating enzyme (EC 2.3.2.25), N-terminus-conjugating E2, ubiquitin carrier protein W, ubiquitin-conjugating enzyme 16 (UBC-16), or ubiquitin-protein ligase W, specifically monoubiquitinates the N-terminus of various substrates, including ATXN3, MAPT/TAU, POLR2H/RPB8 and STUB1/CHIP, by recognizing backbone atoms of disordered N-termini. In vitro, UBE2W catalyzes 'Lys-11'-linked polyubiquitination. UBE2W is an important protein for early postnatal survival and for the normal functioning of multiple organ systems.


Pssm-ID: 467428 [Multi-domain]  Cd Length: 119  Bit Score: 49.83  E-value: 1.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4611 FVRCDEE--RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVnleTTGGHSVRFNPNLYNDGKVCLSILNtwhg 4688
Cdd:cd23808    18 GITLDVAdnNLTEWIVTIEGAPGTLYEGEKFRLRFKFPPDYPIESPEV---VFVGPPIPVHPHVYSNGHICLSILY---- 90

                          90       100
                  ....*....|....*....|...
gi 578803032 4689 rpeEKWNPqTSSFLQVLVSVQSL 4711
Cdd:cd23808    91 ---DDWSP-ALTVSSVCLSILSM 109
UBCc_UBE2H cd23797
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 H ...
 4622-4686 1.87e-06

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 H and related proteins; The E2H subfamily includes mammalian ubiquitin-conjugating enzymes E2 H (UBE2H), yeast E2 ubiquitin-conjugating enzyme 8 (UBC8/GID3), and plant ubiquitin-conjugating enzyme E2 4-6 (UBC4-6). They are ubiquitin-conjugating enzymes (EC 2.3.2.23) that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins. UBE2H (also E3-independent, EC 2.3.2.24) transfers ubiquitin to MAEA, a core component of the CTLH E3 ubiquitin-protein ligase complex. In vitro, UBE2H catalyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitination. It might also ubiquitinate histone H2A. Saccharomyces cerevisiae UBC8 is required for the adaptation to the presence of glucose in the growth medium; it mediates the degradation of enzymes involved in gluconeogenesis when cells are shifted to glucose-containing medium. It is also required for proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBP1).


Pssm-ID: 467417  Cd Length: 138  Bit Score: 50.27  E-value: 1.87e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578803032 4622 MKVLITGPADTPYANGCFEFDVYFPQDYPSSPPlvnlettgghSVRF-----NPNLynD---GKVCLSILN-TW 4686
Cdd:cd23797    27 FIVKFHGPKDTPYEGGVWKVRVELPDDYPYKSP----------SIGFvnkifHPNI--DeasGSVCLDVINqTW 88
Nsa1 cd22858
Ribosome Biogenesis Protein Nsa1; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from ...
 901-974 3.55e-06

Ribosome Biogenesis Protein Nsa1; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from fungi is an essential factor for ribosome assembly. In cooperation with the assembly factor Rix7, Nsa1 participates in an early cleavage of the pre-rRNA processing pathway. Rix7 is a type II double ring, AAA-ATPase, that may mediate the release of Nsa1 from nucleolar pre-60S particles. The release of Nsa1 from a discrete preribosomal particle may trigger the progression of 60S ribosome biogenesis. Nsa1 is essential for cell viability in yeast. It contains an N-terminal seven-bladed beta-propeller WD40 domain that associates with the D1-AAA domain of the AAA-ATPase Rix7, and a flexible lysine-rich C-terminus that extends outward from the WD40 domain, and is required for nucleolar localization.


Pssm-ID: 439304  Cd Length: 399  Bit Score: 52.99  E-value: 3.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  901 GHLVITT-QGGYVKILDLS--------NFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCD 971
Cdd:cd22858    56 EKLLVARrLNGSVELYDLSkvpkfdeeEYELLHSIKGLLDDRSKAKDKFVSLIVLESLGIILAATKSGLVHIIDLEDDLF 135


                  ...
gi 578803032  972 DID 974
Cdd:cd22858   136 KIK 138
UBCc_UBE2U cd23806
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 U ...
 4624-4722 4.69e-05

Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 U and related proteins; The E2U subfamily includes mammalian ubiquitin-conjugating enzymes E2 U (UBE2U/, EC 2.3.2.23) and similar proteins. They are ubiquitin-conjugating enzymes that accept ubiquitin from the E1 complex and catalyze the covalent attachment to other proteins.


Pssm-ID: 467426  Cd Length: 141  Bit Score: 46.46  E-value: 4.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032 4624 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLettggHSVRFNPNLY-NDGKVCLSILNTwhgrpEEKWNPqTSSFL 4702
Cdd:cd23806    33 AKIKGLKDTIWEGGIFRLTLKFSENYNYVPPEVQF-----HTIPFHPNVDpITGRPCIDFLDD-----PEKWNP-SYSLK 101

                          90       100
                  ....*....|....*....|
gi 578803032 4703 QVLVSVQSLIlvAEPYFNEP 4722
Cdd:cd23806   102 SILLSIQVLL--SNPVLENP 119
Nsa1_WDR74-like cd22850
Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 ...
 901-1040 2.39e-04

Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from fungi and WDR74 (WD repeat-containing protein 74) from mammals and plants, are homologous essential factors for ribosome assembly. In cooperation with the assembly factor Rix7/NVL2, Nsa1/WDR74 participates in an early cleavage of the pre-rRNA processing pathway. Rix7/NVL2 is a type II double ring, AAA-ATPase, that may mediate the release of Nsa1/WDR74 from nucleolar pre-60S particles. Nsa1/WDR74 contains an N-terminal seven-bladed beta-propeller WD40 domain that associates with the D1-AAA domain of the AAA-ATPase Rix7/NVL2, and a flexible lysine-rich C-terminus that extends outward from the WD40 domain, and is required for nucleolar localization.


Pssm-ID: 439302 [Multi-domain]  Cd Length: 333  Bit Score: 46.85  E-value: 2.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578803032  901 GHLVITTQGGYVKILDLS-----NFEILAKVEPPKKegTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCDDide 975
Cdd:cd22850    48 PLLLVARRNGNGEVYVLSpvdgeLFELLSSIEGLTR--SKEEDKFVGLHLLRSLGLLTCATKSGLLHIIDLEDSKKD--- 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578803032  976 adilvdgslskgiepSSEGSKPLSNPssPGISGVDLLVDQPFTL-----EILTSLVELTR-FETLTPRFSA 1040
Cdd:cd22850   123 ---------------SLEVKAPLTLP--GFLSAFRVNPTDEGVFayggkENDLKLWDLEKdFLKLKQIWKA 176
COG5078 COG5078
Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones];
4631-4686 3.90e-04

Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444052 [Multi-domain]  Cd Length: 146  Bit Score: 43.93  E-value: 3.90e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 578803032 4631 DTPYANGCFEFDVYFPQDYPSSPPLVNLettggHSVRFNPNLY-NDGKVCLSILNTW 4686
Cdd:COG5078    52 GGPTYGDTHRIEITLPESYPQAPPQVRW-----LTPIFHPNIYeAGGSVCIGRADHW 103
UEV_TSG101-like cd11685
ubiquitin E2 variant (UEV) domain of TSG101 and related proteins; This subfamily includes the ...
 4642-4711 1.76e-03

ubiquitin E2 variant (UEV) domain of TSG101 and related proteins; This subfamily includes the UEV domain of eukaryotic tumor susceptibility gene 101 protein (TSG101, also known as ESCRT-I complex subunit TSG101, vacuolar protein-sorting protein 23, or Vps23) which functions in endocytic trafficking. TSG101 is a component of the ESCRT (endosomal sorting complex required for transport)-I complex, one of four complexes (ESCRT 0, -I, -II, -III) in the vacuolar protein sorting pathway. TSG101 also facilitates HIV-1 virus budding from infected cells, perhaps by linking the p6 domain of the viral structural Gag protein to the vacuolar protein sorting machinery. The UEV domain of TSG101 binds to an essential tetrapeptide motif within the p6 domain of the structural Gag protein and also to ubiquitin. UEVs are homologous to E2 ubiquitin ligases but lack the conserved cysteine residue required for catalytic activity.


Pssm-ID: 467408  Cd Length: 126  Bit Score: 41.53  E-value: 1.76e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578803032 4642 DVYFPQDYPSSPPLVNLE-TTGGHSVRFNPNLYNDGKVCLSILNTwhgrpeekWNPQTSSFLQVLVSVQSL 4711
Cdd:cd11685    55 TIWLPETYPYSPPIVYVVpTPSMMIIKPHPHVDPNGRVYLPYLSE--------WNPPSSNLVDLVQELSAV 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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