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Golgi integral membrane protein 4 isoform X2 [Homo sapiens]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
2A1904 super family
cl36772 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
429-627
4.52e-06
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
TIGR00927 :Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 49.99
E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 429 E MALQRQA E LE E GRPQHQEQLRQQA H YDAMD ndi VQ G A ED Q G - I QGE E G G AYER D n QHQD EAEG DP ----- G N R H E PREQ 502
Cdd:TIGR00927 692 E QEGEGEI E AK E ADHKGETEAEEVE H EGETE --- AE G T ED E G e I ETG E E G EEVE D - EGEG EAEG KH evete G D R K E TEHE 767
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 503 G PR EA DPESEA D RAAVEDINPADDPNNQ G EDEFE E A E QVR E ENLP DE N E E Q KQSNQKQENTEV E EHLVMAGNPD Q Q E DNV 582
Cdd:TIGR00927 768 G ET EA EGKEDE D EGEIQAGEDGEMKGDE G AEGKV E H E GET E AGEK DE H E G Q SETQADDTEVKD E TGEQELNAEN Q G E AKQ 847
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 530374432 583 DE QYQEEAEEEVQE D LT EE KKR E L E HNA EE TYG E ND E NTDDK N ND 627
Cdd:TIGR00927 848 DE KGVDGGGGSDGG D SE EE EEE E E E EEE EE EEE E EE E EEEEE N EE 892
PTZ00121 super family
cl31754 MAEBL; Provisional
77-628
2.32e-05
MAEBL; Provisional
PTZ00121 :Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.83
E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 77 K ERL E HK K AKEDFLVYKL EA QETLNKGRQDSNSRYS A LNVQHQMLKSQHE E LKKQHSDL E EEHR K QG E D fsrtfn DH K QK 156
Cdd:PTZ00121 1308 K KKA E EA K KADEAKKKAE EA KKKADAAKKKAEEAKK A AEAAKAEAEAAAD E AEAAEEKA E AAEK K KE E A ------ KK K AD 1381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 157 YLQLQQ E KEQELSKL K ETVYNLREENRQ L R KA HQD i HTQLQDV K TQVA E Y K QLKDTLNRIPSLR K P D P A EQQ n VTQVAHS 236
Cdd:PTZ00121 1382 AAKKKA E EKKKADEA K KKAEEDKKKADE L K KA AAA - KKKADEA K KKAE E K K KADEAKKKAEEAK K A D E A KKK - AEEAKKA 1459
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 237 PQGYNT A R E K pt REVQ E VSRNNDVWQNHEAVPGR AE DT K LY A - PTH K E AE FQAPPEPIQQEV E RREPE E HQVE EE HR KA L 315
Cdd:PTZ00121 1460 EEAKKK A E E A -- KKAD E AKKKAEEAKKADEAKKK AE EA K KK A d EAK K A AE AKKKADEAKKAE E AKKAD E AKKA EE AK KA D 1537
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 316 E EEEM E QVGQ A EH L EEEHDPSPE E QDREWK E QHEQR E AA N LLEGH A ---- R AE VYPSAKP M IKFQSPYEEQL E QQRL A VQ 391
Cdd:PTZ00121 1538 E AKKA E EKKK A DE L KKAEELKKA E EKKKAE E AKKAE E DK N MALRK A eeak K AE EARIEEV M KLYEEEKKMKA E EAKK A EE 1617
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 392 QVEE A QQ L REHQ E alhqqrlqghllrqqeqqqqq VAREMALQRQA E L EE GR pq HQ E Q L RQQ ahydamdndivqg A E DQG I 471
Cdd:PTZ00121 1618 AKIK A EE L KKAE E --------------------- EKKKVEQLKKK E A EE KK -- KA E E L KKA ------------- E E ENK I 1661
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 472 QGE E ggay E RDNQHQ D EAEGDPGNRH E PR E QGPR EA DPESEADRAAV E DINPADDPNNQGED E FEE AE QVRE --- E NLPD 548
Cdd:PTZ00121 1662 KAA E ---- E AKKAEE D KKKAEEAKKA E ED E KKAA EA LKKEAEEAKKA E ELKKKEAEEKKKAE E LKK AE EENK ika E EAKK 1737
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 549 E N EE Q K QSNQKQENT E V E EHLVMAGNPDQQEDNVDEQYQE EA EE E VQE D LTE EK K R ELEHNAEETYGE N DE N TDDKNND G 628
Cdd:PTZ00121 1738 E A EE D K KKAEEAKKD E E E KKKIAHLKKEEEKKAEEIRKEK EA VI E EEL D EED EK R R MEVDKKIKDIFD N FA N IIEGGKE G 1817
Name
Accession
Description
Interval
E-value
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
429-627
4.52e-06
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 49.99
E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 429 E MALQRQA E LE E GRPQHQEQLRQQA H YDAMD ndi VQ G A ED Q G - I QGE E G G AYER D n QHQD EAEG DP ----- G N R H E PREQ 502
Cdd:TIGR00927 692 E QEGEGEI E AK E ADHKGETEAEEVE H EGETE --- AE G T ED E G e I ETG E E G EEVE D - EGEG EAEG KH evete G D R K E TEHE 767
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 503 G PR EA DPESEA D RAAVEDINPADDPNNQ G EDEFE E A E QVR E ENLP DE N E E Q KQSNQKQENTEV E EHLVMAGNPD Q Q E DNV 582
Cdd:TIGR00927 768 G ET EA EGKEDE D EGEIQAGEDGEMKGDE G AEGKV E H E GET E AGEK DE H E G Q SETQADDTEVKD E TGEQELNAEN Q G E AKQ 847
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 530374432 583 DE QYQEEAEEEVQE D LT EE KKR E L E HNA EE TYG E ND E NTDDK N ND 627
Cdd:TIGR00927 848 DE KGVDGGGGSDGG D SE EE EEE E E E EEE EE EEE E EE E EEEEE N EE 892
PTZ00121
PTZ00121 MAEBL; Provisional
77-628
2.32e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.83
E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 77 K ERL E HK K AKEDFLVYKL EA QETLNKGRQDSNSRYS A LNVQHQMLKSQHE E LKKQHSDL E EEHR K QG E D fsrtfn DH K QK 156
Cdd:PTZ00121 1308 K KKA E EA K KADEAKKKAE EA KKKADAAKKKAEEAKK A AEAAKAEAEAAAD E AEAAEEKA E AAEK K KE E A ------ KK K AD 1381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 157 YLQLQQ E KEQELSKL K ETVYNLREENRQ L R KA HQD i HTQLQDV K TQVA E Y K QLKDTLNRIPSLR K P D P A EQQ n VTQVAHS 236
Cdd:PTZ00121 1382 AAKKKA E EKKKADEA K KKAEEDKKKADE L K KA AAA - KKKADEA K KKAE E K K KADEAKKKAEEAK K A D E A KKK - AEEAKKA 1459
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 237 PQGYNT A R E K pt REVQ E VSRNNDVWQNHEAVPGR AE DT K LY A - PTH K E AE FQAPPEPIQQEV E RREPE E HQVE EE HR KA L 315
Cdd:PTZ00121 1460 EEAKKK A E E A -- KKAD E AKKKAEEAKKADEAKKK AE EA K KK A d EAK K A AE AKKKADEAKKAE E AKKAD E AKKA EE AK KA D 1537
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 316 E EEEM E QVGQ A EH L EEEHDPSPE E QDREWK E QHEQR E AA N LLEGH A ---- R AE VYPSAKP M IKFQSPYEEQL E QQRL A VQ 391
Cdd:PTZ00121 1538 E AKKA E EKKK A DE L KKAEELKKA E EKKKAE E AKKAE E DK N MALRK A eeak K AE EARIEEV M KLYEEEKKMKA E EAKK A EE 1617
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 392 QVEE A QQ L REHQ E alhqqrlqghllrqqeqqqqq VAREMALQRQA E L EE GR pq HQ E Q L RQQ ahydamdndivqg A E DQG I 471
Cdd:PTZ00121 1618 AKIK A EE L KKAE E --------------------- EKKKVEQLKKK E A EE KK -- KA E E L KKA ------------- E E ENK I 1661
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 472 QGE E ggay E RDNQHQ D EAEGDPGNRH E PR E QGPR EA DPESEADRAAV E DINPADDPNNQGED E FEE AE QVRE --- E NLPD 548
Cdd:PTZ00121 1662 KAA E ---- E AKKAEE D KKKAEEAKKA E ED E KKAA EA LKKEAEEAKKA E ELKKKEAEEKKKAE E LKK AE EENK ika E EAKK 1737
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 549 E N EE Q K QSNQKQENT E V E EHLVMAGNPDQQEDNVDEQYQE EA EE E VQE D LTE EK K R ELEHNAEETYGE N DE N TDDKNND G 628
Cdd:PTZ00121 1738 E A EE D K KKAEEAKKD E E E KKKIAHLKKEEEKKAEEIRKEK EA VI E EEL D EED EK R R MEVDKKIKDIFD N FA N IIEGGKE G 1817
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
30-604
2.86e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 47.62
E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 30 A ML Y Y EL QTQ L RKA EA VA L ----- KYQQHQ E S L S A Q L QVVYEHRSR LE KS L QKERL E HKKAKEDFLVYK LE AQ E t LNKGR 104
Cdd:COG1196 212 A ER Y R EL KEE L KEL EA EL L llklr ELEAEL E E L E A E L EELEAELEE LE AE L AELEA E LEELRLELEELE LE LE E - AQAEE 290
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 105 QDSNSRYSA L NVQHQM L KSQHE EL KKQHSD LEEE HRKQG E DFS rtfn DHKQKYLQ L QQ E K E QELSK L K E TVYN L R E ENRQ 184
Cdd:COG1196 291 YELLAELAR L EQDIAR L EERRR EL EERLEE LEEE LAELE E ELE ---- ELEEELEE L EE E L E EAEEE L E E AEAE L A E AEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 185 L RK A HQDIHTQLQDVKTQVA E YKQLKDTLNR ipslrkpdpa EQQNVTQVAHSPQGYNTAR E KPTR E VQ E VSRN ndvwqnh 264
Cdd:COG1196 367 L LE A EAELAEAEEELEELAE E LLEALRAAAE ---------- LAAQLEELEEAEEALLERL E RLEE E LE E LEEA ------- 429
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 265 eavpg R AE DTKLYAPTHKE aefqappepi QQ E VERR E P E EHQV EE EHRKA L E E EEM E QVGQAEH L E E EHDPSP E EQD R EW 344
Cdd:COG1196 430 ----- L AE LEEEEEEEEEA ---------- LE E AAEE E A E LEEE EE ALLEL L A E LLE E AALLEAA L A E LLEELA E AAA R LL 494
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 345 KEQHEQREAANL LEG HAR A EVYPSAKP ------- M I KFQSP YE EQ LE ------ Q Q RLA V QQV E E A QQLR E HQE A LHQQ R L 411
Cdd:COG1196 495 LLLEAEADYEGF LEG VKA A LLLAGLRG lagavav L I GVEAA YE AA LE aalaaa L Q NIV V EDD E V A AAAI E YLK A AKAG R A 574
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 412 QGHL L RQQEQQQQQV A REMALQRQ A E -- L EEGRPQHQEQLRQQAHYDAMDNDI V QGAEDQGIQGEEGG A YERDNQHQDEA 489
Cdd:COG1196 575 TFLP L DKIRARAALA A ALARGAIG A A vd L VASDLREADARYYVLGDTLLGRTL V AARLEAALRRAVTL A GRLREVTLEGE 654
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 490 E G DP G NRHEPREQGPRE A DPESEADRAAVEDINP A DDPNNQG E DEFE E A E QV RE ENLPD E NEEQKQSNQKQENTEV E EHL 569
Cdd:COG1196 655 G G SA G GSLTGGSRRELL A ALLEAEAELEELAERL A EEELELE E ALLA E E E EE RE LAEAE E ERLEEELEEEALEEQL E AER 734
570 580 590
....*....|....*....|....*....|....*
gi 530374432 570 VMAGN p DQQ E DNVDEQYQEEA E EEVQE DL T E EKKR 604
Cdd:COG1196 735 EELLE - ELL E EEELLEEEALE E LPEPP DL E E LERE 768
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
34-213
6.96e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.12
E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 34 Y EL QTQLRKAEAVALKYQQHQES L SA Q L Q VVY E HRSR LE KS L QK -- ER LE HKKA K E D F L VYK L EAQ E T lnkgrqdsns RY 111
Cdd:TIGR02168 277 S EL EEEIEELQKELYALANEISR L EQ Q K Q ILR E RLAN LE RQ L EE le AQ LE ELES K L D E L AEE L AEL E E ---------- KL 346
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 112 SA L NVQHQM L KSQH EEL KKQHSD LE --- EE HRK Q G E DFSRTFNDHKQKYLQ L Q --- QEK E QE L SK L KETVYN L RE E NRQ L 185
Cdd:TIGR02168 347 EE L KEELES L EAEL EEL EAELEE LE srl EE LEE Q L E TLRSKVAQLELQIAS L N nei ERL E AR L ER L EDRRER L QQ E IEE L 426
170 180
....*....|....*....|....*...
gi 530374432 186 R K AHQD ih TQ L QDVKTQVA E YKQLKDT L 213
Cdd:TIGR02168 427 L K KLEE -- AE L KELQAELE E LEEELEE L 452
LCD1
pfam09798 DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ...
120-255
8.28e-03
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906
Cd Length: 615
Bit Score: 39.22
E-value: 8.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 120 ML KSQH E E L KKQ hsd L E E E HR K Q gedfsrtfndh K QK Y LQ L QQEK E Q EL S KLK ET V YN L RE E NRQ L RKAHQDIHTQLQDV 199
Cdd:pfam09798 1 ML RDKL E L L QQE --- K E K E LE K L ----------- K NS Y EE L KSSH E E EL E KLK QE V QK L ED E KKF L LNELRSLSATSPAS 66
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 530374432 200 KTQVAE yk QLK D TLNRIPSL RK PDPAEQQNVT Q vahspqgy NTA R EKPT R E V Q E V S 255
Cdd:pfam09798 67 SQSHET -- DTD D SSSVSLKK RK IEESTAESLK Q -------- KYI R LQNN R I V D E T S 112
Name
Accession
Description
Interval
E-value
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
429-627
4.52e-06
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 49.99
E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 429 E MALQRQA E LE E GRPQHQEQLRQQA H YDAMD ndi VQ G A ED Q G - I QGE E G G AYER D n QHQD EAEG DP ----- G N R H E PREQ 502
Cdd:TIGR00927 692 E QEGEGEI E AK E ADHKGETEAEEVE H EGETE --- AE G T ED E G e I ETG E E G EEVE D - EGEG EAEG KH evete G D R K E TEHE 767
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 503 G PR EA DPESEA D RAAVEDINPADDPNNQ G EDEFE E A E QVR E ENLP DE N E E Q KQSNQKQENTEV E EHLVMAGNPD Q Q E DNV 582
Cdd:TIGR00927 768 G ET EA EGKEDE D EGEIQAGEDGEMKGDE G AEGKV E H E GET E AGEK DE H E G Q SETQADDTEVKD E TGEQELNAEN Q G E AKQ 847
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 530374432 583 DE QYQEEAEEEVQE D LT EE KKR E L E HNA EE TYG E ND E NTDDK N ND 627
Cdd:TIGR00927 848 DE KGVDGGGGSDGG D SE EE EEE E E E EEE EE EEE E EE E EEEEE N EE 892
PTZ00121
PTZ00121 MAEBL; Provisional
77-628
2.32e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.83
E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 77 K ERL E HK K AKEDFLVYKL EA QETLNKGRQDSNSRYS A LNVQHQMLKSQHE E LKKQHSDL E EEHR K QG E D fsrtfn DH K QK 156
Cdd:PTZ00121 1308 K KKA E EA K KADEAKKKAE EA KKKADAAKKKAEEAKK A AEAAKAEAEAAAD E AEAAEEKA E AAEK K KE E A ------ KK K AD 1381
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 157 YLQLQQ E KEQELSKL K ETVYNLREENRQ L R KA HQD i HTQLQDV K TQVA E Y K QLKDTLNRIPSLR K P D P A EQQ n VTQVAHS 236
Cdd:PTZ00121 1382 AAKKKA E EKKKADEA K KKAEEDKKKADE L K KA AAA - KKKADEA K KKAE E K K KADEAKKKAEEAK K A D E A KKK - AEEAKKA 1459
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 237 PQGYNT A R E K pt REVQ E VSRNNDVWQNHEAVPGR AE DT K LY A - PTH K E AE FQAPPEPIQQEV E RREPE E HQVE EE HR KA L 315
Cdd:PTZ00121 1460 EEAKKK A E E A -- KKAD E AKKKAEEAKKADEAKKK AE EA K KK A d EAK K A AE AKKKADEAKKAE E AKKAD E AKKA EE AK KA D 1537
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 316 E EEEM E QVGQ A EH L EEEHDPSPE E QDREWK E QHEQR E AA N LLEGH A ---- R AE VYPSAKP M IKFQSPYEEQL E QQRL A VQ 391
Cdd:PTZ00121 1538 E AKKA E EKKK A DE L KKAEELKKA E EKKKAE E AKKAE E DK N MALRK A eeak K AE EARIEEV M KLYEEEKKMKA E EAKK A EE 1617
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 392 QVEE A QQ L REHQ E alhqqrlqghllrqqeqqqqq VAREMALQRQA E L EE GR pq HQ E Q L RQQ ahydamdndivqg A E DQG I 471
Cdd:PTZ00121 1618 AKIK A EE L KKAE E --------------------- EKKKVEQLKKK E A EE KK -- KA E E L KKA ------------- E E ENK I 1661
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 472 QGE E ggay E RDNQHQ D EAEGDPGNRH E PR E QGPR EA DPESEADRAAV E DINPADDPNNQGED E FEE AE QVRE --- E NLPD 548
Cdd:PTZ00121 1662 KAA E ---- E AKKAEE D KKKAEEAKKA E ED E KKAA EA LKKEAEEAKKA E ELKKKEAEEKKKAE E LKK AE EENK ika E EAKK 1737
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 549 E N EE Q K QSNQKQENT E V E EHLVMAGNPDQQEDNVDEQYQE EA EE E VQE D LTE EK K R ELEHNAEETYGE N DE N TDDKNND G 628
Cdd:PTZ00121 1738 E A EE D K KKAEEAKKD E E E KKKIAHLKKEEEKKAEEIRKEK EA VI E EEL D EED EK R R MEVDKKIKDIFD N FA N IIEGGKE G 1817
2A1904
TIGR00927 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
316-560
2.53e-05
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain]
Cd Length: 1096
Bit Score: 47.68
E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 316 EE E E MEQVGQA E HL EE EHDPSPE E QDR E W K EQH E Q ------- R EAANLL EG HAR A EVYPSAKPMIKFQSPY E EQL E QQRL 388
Cdd:TIGR00927 647 EE G E RPTEAEG E NG EE SGGEAEQ E GET E T K GEN E S egeipae R KGEQEG EG EIE A KEADHKGETEAEEVEH E GET E AEGT 726
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 389 AVQQVE E AQQLR E HQ E ALHQQRLQ G -- HLLRQQEQQQQQVAR E MALQRQAELE EG RP Q HQ E QLRQQAH y DAMDNDIVQGA 466
Cdd:TIGR00927 727 EDEGEI E TGEEG E EV E DEGEGEAE G kh EVETEGDRKETEHEG E TEAEGKEDED EG EI Q AG E DGEMKGD - EGAEGKVEHEG 805
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 467 E DQGIQGE E GGAYERDNQHQD E AEGDP G NR ------ HEPRE Q GPREA D PESEA D RAAV E DINPADDPNNQG E D E F EE A E Q 540
Cdd:TIGR00927 806 E TEAGEKD E HEGQSETQADDT E VKDET G EQ elnaen QGEAK Q DEKGV D GGGGS D GGDS E EEEEEEEEEEEE E E E E EE E E E 885
250 260
....*....|....*....|
gi 530374432 541 VR EEN LPDENE E QKQSN QKQ 560
Cdd:TIGR00927 886 EE EEN EEPLSL E WPETR QKQ 905
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
30-604
2.86e-05
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 47.62
E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 30 A ML Y Y EL QTQ L RKA EA VA L ----- KYQQHQ E S L S A Q L QVVYEHRSR LE KS L QKERL E HKKAKEDFLVYK LE AQ E t LNKGR 104
Cdd:COG1196 212 A ER Y R EL KEE L KEL EA EL L llklr ELEAEL E E L E A E L EELEAELEE LE AE L AELEA E LEELRLELEELE LE LE E - AQAEE 290
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 105 QDSNSRYSA L NVQHQM L KSQHE EL KKQHSD LEEE HRKQG E DFS rtfn DHKQKYLQ L QQ E K E QELSK L K E TVYN L R E ENRQ 184
Cdd:COG1196 291 YELLAELAR L EQDIAR L EERRR EL EERLEE LEEE LAELE E ELE ---- ELEEELEE L EE E L E EAEEE L E E AEAE L A E AEEA 366
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 185 L RK A HQDIHTQLQDVKTQVA E YKQLKDTLNR ipslrkpdpa EQQNVTQVAHSPQGYNTAR E KPTR E VQ E VSRN ndvwqnh 264
Cdd:COG1196 367 L LE A EAELAEAEEELEELAE E LLEALRAAAE ---------- LAAQLEELEEAEEALLERL E RLEE E LE E LEEA ------- 429
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 265 eavpg R AE DTKLYAPTHKE aefqappepi QQ E VERR E P E EHQV EE EHRKA L E E EEM E QVGQAEH L E E EHDPSP E EQD R EW 344
Cdd:COG1196 430 ----- L AE LEEEEEEEEEA ---------- LE E AAEE E A E LEEE EE ALLEL L A E LLE E AALLEAA L A E LLEELA E AAA R LL 494
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 345 KEQHEQREAANL LEG HAR A EVYPSAKP ------- M I KFQSP YE EQ LE ------ Q Q RLA V QQV E E A QQLR E HQE A LHQQ R L 411
Cdd:COG1196 495 LLLEAEADYEGF LEG VKA A LLLAGLRG lagavav L I GVEAA YE AA LE aalaaa L Q NIV V EDD E V A AAAI E YLK A AKAG R A 574
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 412 QGHL L RQQEQQQQQV A REMALQRQ A E -- L EEGRPQHQEQLRQQAHYDAMDNDI V QGAEDQGIQGEEGG A YERDNQHQDEA 489
Cdd:COG1196 575 TFLP L DKIRARAALA A ALARGAIG A A vd L VASDLREADARYYVLGDTLLGRTL V AARLEAALRRAVTL A GRLREVTLEGE 654
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 490 E G DP G NRHEPREQGPRE A DPESEADRAAVEDINP A DDPNNQG E DEFE E A E QV RE ENLPD E NEEQKQSNQKQENTEV E EHL 569
Cdd:COG1196 655 G G SA G GSLTGGSRRELL A ALLEAEAELEELAERL A EEELELE E ALLA E E E EE RE LAEAE E ERLEEELEEEALEEQL E AER 734
570 580 590
....*....|....*....|....*....|....*
gi 530374432 570 VMAGN p DQQ E DNVDEQYQEEA E EEVQE DL T E EKKR 604
Cdd:COG1196 735 EELLE - ELL E EEELLEEEALE E LPEPP DL E E LERE 768
PTZ00121
PTZ00121 MAEBL; Provisional
35-565
3.40e-05
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 47.44
E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 35 E LQTQLR K AE A V A L K YQQHQESLSAQLQVVY E HRSRLEKS L Q K ERLEH KKA K E ----------- D FLVY K L E AQETLNKG 103
Cdd:PTZ00121 1370 E KKKEEA K KK A D A A K KKAEEKKKADEAKKKA E EDKKKADE L K K AAAAK KKA D E akkkaeekkka D EAKK K A E EAKKADEA 1449
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 104 RQDSNSRYS A LNVQHQM - LKSQHE E L KK QHSDLE -- E E HR K QG E DFSRTFNDH K QK yl QLQQE K EQ E LS K LK E tvynl RE 180
Cdd:PTZ00121 1450 KKKAEEAKK A EEAKKKA e EAKKAD E A KK KAEEAK ka D E AK K KA E EAKKKADEA K KA -- AEAKK K AD E AK K AE E ----- AK 1522
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 181 ENRQLR KA HQDIHTQ lqdv KTQV AE Y K QLK D T L NRIPS L R K PDPAEQQNVTQV A HSPQGYNTAREKPTREVQ E VSRNNDV 260
Cdd:PTZ00121 1523 KADEAK KA EEAKKAD ---- EAKK AE E K KKA D E L KKAEE L K K AEEKKKAEEAKK A EEDKNMALRKAEEAKKAE E ARIEEVM 1598
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 261 WQNH E AVPGR AE DT K LYAPTHKE AE FQAPP E PIQQE VE RREPE E HQVEEEHRKALEE EE MEQVGQ AE -- HLE EE HDPSP E 338
Cdd:PTZ00121 1599 KLYE E EKKMK AE EA K KAEEAKIK AE ELKKA E EEKKK VE QLKKK E AEEKKKAEELKKA EE ENKIKA AE ea KKA EE DKKKA E 1678
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 339 E QDREWKEQHEQR EA ANLLEGH A RA -- E VYPSAKPMI K FQSPYEEQL E QQRLAVQQVE - EA QQLREHQ E ALHQQRLQGHL 415
Cdd:PTZ00121 1679 E AKKAEEDEKKAA EA LKKEAEE A KK ae E LKKKEAEEK K KAEELKKAE E ENKIKAEEAK k EA EEDKKKA E EAKKDEEEKKK 1758
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 416 LRQQEQQQQQV A R E MALQRQ A EL EE GRPQHQ E QL R QQA hy D AMDN DI VQGAEDQGIQ G E EG GAYER D NQHQDEAE ----- 490
Cdd:PTZ00121 1759 IAHLKKEEEKK A E E IRKEKE A VI EE ELDEED E KR R MEV -- D KKIK DI FDNFANIIEG G K EG NLVIN D SKEMEDSA ikeva 1836
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530374432 491 --- GDPGNRHEPR E QGPREADP E SEA D RAAVE D I N PAD D PNNQG E D E F EEA EQVREENLP D ENE E QKQS N QKQE N TEV 565
Cdd:PTZ00121 1837 dsk NMQLEEADAF E KHKFNKNN E NGE D GNKEA D F N KEK D LKEDD E E E I EEA DEIEKIDKD D IER E IPNN N MAGK N NDI 1914
PTZ00121
PTZ00121 MAEBL; Provisional
121-640
1.76e-04
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain]
Cd Length: 2084
Bit Score: 45.13
E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 121 L K SQH EE L KK QHSDLEE -- E HR K QGEDFSRTFNDHKQKYLQLQQ EK ---- E QELSKL K ETVYNLREENRQLR KA hqdiht 194
Cdd:PTZ00121 1320 A K KKA EE A KK KADAAKK ka E EA K KAAEAAKAEAEAAADEAEAAE EK aeaa E KKKEEA K KKADAAKKKAEEKK KA ------ 1393
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 195 ql QDV K TQVA E Y K QLK D T L NRIPSLR K PDPAEQQNVTQVAHSPQGYNT A R E K pt REVQ E VSRNNDVWQNH E AVPGR AE DT 274
Cdd:PTZ00121 1394 -- DEA K KKAE E D K KKA D E L KKAAAAK K KADEAKKKAEEKKKADEAKKK A E E A -- KKAD E AKKKAEEAKKA E EAKKK AE EA 1469
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 275 K LYAPTH K E AE FQAPPEPIQQEV E RREPEEHQVEEEHRKALEEE E MEQVGQ A EHLE E EHDPSPEEQDR E W K EQH E QRE A A 354
Cdd:PTZ00121 1470 K KADEAK K K AE EAKKADEAKKKA E EAKKKADEAKKAAEAKKKAD E AKKAEE A KKAD E AKKAEEAKKAD E A K KAE E KKK A D 1549
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 355 N L legh AR AE VYPS A KPMI K FQSPYEEQ l E QQRL A VQQV EEA QQLR E H qealhqqrlqghll R QQ E QQQQQVAREMALQR 434
Cdd:PTZ00121 1550 E L ---- KK AE ELKK A EEKK K AEEAKKAE - E DKNM A LRKA EEA KKAE E A -------------- R IE E VMKLYEEEKKMKAE 1610
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 435 Q A ELE E GRPQHQ E Q L RQQAHYDAMDNDIVQGAEDQGIQG EE GGAY E RD N QHQDEA E gdpgnrhepr EQGPR E ADPES E AD 514
Cdd:PTZ00121 1611 E A KKA E EAKIKA E E L KKAEEEKKKVEQLKKKEAEEKKKA EE LKKA E EE N KIKAAE E ---------- AKKAE E DKKKA E EA 1680
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 515 RA A V ED INP A DDPNNQGED E FEE AE QVREE nlpd E N EE Q K QSNQKQENT E VEEHLVMAGNPDQQ ED nvdeqyqee AEEEV 594
Cdd:PTZ00121 1681 KK A E ED EKK A AEALKKEAE E AKK AE ELKKK ---- E A EE K K KAEELKKAE E ENKIKAEEAKKEAE ED --------- KKKAE 1747
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 530374432 595 QEDLT EE K K RELE H NAE E TYGEND E NTDD K NNDG EE QEVRD D NRPK 640
Cdd:PTZ00121 1748 EAKKD EE E K KKIA H LKK E EEKKAE E IRKE K EAVI EE ELDEE D EKRR 1793
Smc
COG1196 Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
35-540
6.02e-04
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain]
Cd Length: 983
Bit Score: 43.00
E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 35 E L Q TQLRKAE A VALKYQ Q HQES L SAQLQVVY E HRSR LE KS L QKERL E HKKAK E DFLVYKL E AQ E TLNKGRQDSNSRYS A L 114
Cdd:COG1196 285 E A Q AEEYELL A ELARLE Q DIAR L EERRRELE E RLEE LE EE L AELEE E LEELE E ELEELEE E LE E AEEELEEAEAELAE A E 364
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 115 NVQHQMLKSQH E ELKKQHSDL EE EHRKQGE df SRTFNDHKQKYLQLQQEKEQE L SK L K E TVYN L R E ENRQ L RKAHQDIHT 194
Cdd:COG1196 365 EALLEAEAELA E AEEELEELA EE LLEALRA -- AAELAAQLEELEEAEEALLER L ER L E E ELEE L E E ALAE L EEEEEEEEE 442
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 195 Q L QDVKTQV AE YKQLKDT L NRIPSLRKPDP A EQQNVTQVAHSPQGYNT AR EKPTR E VQEV -- SRNND V WQNHEAVPG R AE 272
Cdd:COG1196 443 A L EEAAEEE AE LEEEEEA L LELLAELLEEA A LLEAALAELLEELAEAA AR LLLLL E AEAD ye GFLEG V KAALLLAGL R GL 522
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 273 DTKLYAPTHK EA EFQ A PP E PIQQEVERREPE E HQVEEEHRKALEEEEMEQVGQAEH L EEEHDPSPEEQDREWKEQHEQRE 352
Cdd:COG1196 523 AGAVAVLIGV EA AYE A AL E AALAAALQNIVV E DDEVAAAAIEYLKAAKAGRATFLP L DKIRARAALAAALARGAIGAAVD 602
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 353 AANLLEGH A R A EV Y PSAKPMIKFQSPYEEQLEQQ R L AV QQVEEAQQLREHQ E ALHQQRLQGHLL R QQEQQQQQV A REM -- 430
Cdd:COG1196 603 LVASDLRE A D A RY Y VLGDTLLGRTLVAARLEAAL R R AV TLAGRLREVTLEG E GGSAGGSLTGGS R RELLAALLE A EAE le 682
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 431 - ALQ R Q AE L E EGRPQHQEQLRQQAHYD A MDNDIVQGA E DQGIQG EE GGAY ER DNQHQDEA E GDPGNRH E PR E QG P REA D P 509
Cdd:COG1196 683 e LAE R L AE E E LELEEALLAEEEEEREL A EAEEERLEE E LEEEAL EE QLEA ER EELLEELL E EEELLEE E AL E EL P EPP D L 762
490 500 510
....*....|....*....|....*....|....*....
gi 530374432 510 E S -------- E ADRA A VEDI N PA ddpnnq GED E F EE A E Q 540
Cdd:COG1196 763 E E lerelerl E REIE A LGPV N LL ------ AIE E Y EE L E E 795
SMC_prok_B
TIGR02168 chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
34-213
6.96e-04
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain]
Cd Length: 1179
Bit Score: 43.12
E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 34 Y EL QTQLRKAEAVALKYQQHQES L SA Q L Q VVY E HRSR LE KS L QK -- ER LE HKKA K E D F L VYK L EAQ E T lnkgrqdsns RY 111
Cdd:TIGR02168 277 S EL EEEIEELQKELYALANEISR L EQ Q K Q ILR E RLAN LE RQ L EE le AQ LE ELES K L D E L AEE L AEL E E ---------- KL 346
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 112 SA L NVQHQM L KSQH EEL KKQHSD LE --- EE HRK Q G E DFSRTFNDHKQKYLQ L Q --- QEK E QE L SK L KETVYN L RE E NRQ L 185
Cdd:TIGR02168 347 EE L KEELES L EAEL EEL EAELEE LE srl EE LEE Q L E TLRSKVAQLELQIAS L N nei ERL E AR L ER L EDRRER L QQ E IEE L 426
170 180
....*....|....*....|....*...
gi 530374432 186 R K AHQD ih TQ L QDVKTQVA E YKQLKDT L 213
Cdd:TIGR02168 427 L K KLEE -- AE L KELQAELE E LEEELEE L 452
LCD1
pfam09798 DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ...
120-255
8.28e-03
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906
Cd Length: 615
Bit Score: 39.22
E-value: 8.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530374432 120 ML KSQH E E L KKQ hsd L E E E HR K Q gedfsrtfndh K QK Y LQ L QQEK E Q EL S KLK ET V YN L RE E NRQ L RKAHQDIHTQLQDV 199
Cdd:pfam09798 1 ML RDKL E L L QQE --- K E K E LE K L ----------- K NS Y EE L KSSH E E EL E KLK QE V QK L ED E KKF L LNELRSLSATSPAS 66
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 530374432 200 KTQVAE yk QLK D TLNRIPSL RK PDPAEQQNVT Q vahspqgy NTA R EKPT R E V Q E V S 255
Cdd:pfam09798 67 SQSHET -- DTD D SSSVSLKK RK IEESTAESLK Q -------- KYI R LQNN R I V D E T S 112
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
