NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|528992432|ref|XP_005219416|]
View 

coiled-coil domain-containing protein 9 isoform X1 [Bos taurus]

Protein Classification

CCDC9 family protein( domain architecture ID 13867029)

CCDC9 family protein is a DUF4594 domain-containing protein similar to Homo sapiens coiled-coil domain-containing protein 9B

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4594 pfam15266
Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The ...
 202-368 1.18e-43

Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The protein family is found in eukaryotes, and is typically between 170 and 183 amino acids in length.In humans, the gene encoding this protein lies in the position, chromosome 15 open reading frame 52.


:

Pssm-ID: 464604 [Multi-domain]  Cd Length: 177  Bit Score: 153.39  E-value: 1.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  202 LEEPERDRREGSRRHGRNWGGSDFERVRYGLEQE--RQGRRAGLGGAGDmTLSMTGRERSEYLRWKQEREKIDQERLQRH 279
Cdd:pfam15266   1 PTRARRDRAEGSRGGGRNWSGPDQMAVSSDSEQKgaREPRSPGLVGPGP-TLSMTGRERWDYARWKQEREQIDLARLARH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  280 RKPTGQWRREWDAEKTDGMFKDGPAVALEPSHRYDDQAWAR------PPKPPTFREFLS----QHKTEVSR--RKKKSSR 347
Cdd:pfam15266  80 RDAQGDWRRPWDLDKAKPMFQDGSKPRDEGPARAGSRKGPRshrklqPPPLPPDGKFLGrggqQGRPSVAPatRSKARGK 159

                         170       180
                  ....*....|....*....|.
gi 528992432  348 PQPKAAPRaysdhddRWEMKE 368
Cdd:pfam15266 160 ERLTGRAR-------RWETKE 173
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 348-560 2.32e-06

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.75  E-value: 2.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 348 PQPKAAPRAYSDHDDRWEMKEAMSTAPEPPQPALPKE-APTQLPETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEE 426
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAApAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 427 EEIEEEEEADDEEEEPAGDHQPQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNS 506
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 528992432 507 PRTAHPADAVSPGGDQPAPASlESGPSAPGAQKAEEEGSEAAPEADPEGQETAE 560
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAP-AAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
 
Name Accession Description Interval E-value
DUF4594 pfam15266
Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The ...
 202-368 1.18e-43

Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The protein family is found in eukaryotes, and is typically between 170 and 183 amino acids in length.In humans, the gene encoding this protein lies in the position, chromosome 15 open reading frame 52.


Pssm-ID: 464604 [Multi-domain]  Cd Length: 177  Bit Score: 153.39  E-value: 1.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  202 LEEPERDRREGSRRHGRNWGGSDFERVRYGLEQE--RQGRRAGLGGAGDmTLSMTGRERSEYLRWKQEREKIDQERLQRH 279
Cdd:pfam15266   1 PTRARRDRAEGSRGGGRNWSGPDQMAVSSDSEQKgaREPRSPGLVGPGP-TLSMTGRERWDYARWKQEREQIDLARLARH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  280 RKPTGQWRREWDAEKTDGMFKDGPAVALEPSHRYDDQAWAR------PPKPPTFREFLS----QHKTEVSR--RKKKSSR 347
Cdd:pfam15266  80 RDAQGDWRRPWDLDKAKPMFQDGSKPRDEGPARAGSRKGPRshrklqPPPLPPDGKFLGrggqQGRPSVAPatRSKARGK 159

                         170       180
                  ....*....|....*....|.
gi 528992432  348 PQPKAAPRaysdhddRWEMKE 368
Cdd:pfam15266 160 ERLTGRAR-------RWETKE 173
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 348-560 2.32e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.75  E-value: 2.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 348 PQPKAAPRAYSDHDDRWEMKEAMSTAPEPPQPALPKE-APTQLPETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEE 426
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAApAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 427 EEIEEEEEADDEEEEPAGDHQPQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNS 506
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 528992432 507 PRTAHPADAVSPGGDQPAPASlESGPSAPGAQKAEEEGSEAAPEADPEGQETAE 560
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAP-AAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
 
Name Accession Description Interval E-value
DUF4594 pfam15266
Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The ...
 202-368 1.18e-43

Domain of unknown function (DUF4594); This protein family is a domain of unknown function. The protein family is found in eukaryotes, and is typically between 170 and 183 amino acids in length.In humans, the gene encoding this protein lies in the position, chromosome 15 open reading frame 52.


Pssm-ID: 464604 [Multi-domain]  Cd Length: 177  Bit Score: 153.39  E-value: 1.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  202 LEEPERDRREGSRRHGRNWGGSDFERVRYGLEQE--RQGRRAGLGGAGDmTLSMTGRERSEYLRWKQEREKIDQERLQRH 279
Cdd:pfam15266   1 PTRARRDRAEGSRGGGRNWSGPDQMAVSSDSEQKgaREPRSPGLVGPGP-TLSMTGRERWDYARWKQEREQIDLARLARH 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  280 RKPTGQWRREWDAEKTDGMFKDGPAVALEPSHRYDDQAWAR------PPKPPTFREFLS----QHKTEVSR--RKKKSSR 347
Cdd:pfam15266  80 RDAQGDWRRPWDLDKAKPMFQDGSKPRDEGPARAGSRKGPRshrklqPPPLPPDGKFLGrggqQGRPSVAPatRSKARGK 159

                         170       180
                  ....*....|....*....|.
gi 528992432  348 PQPKAAPRaysdhddRWEMKE 368
Cdd:pfam15266 160 ERLTGRAR-------RWETKE 173
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 348-560 2.32e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.75  E-value: 2.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 348 PQPKAAPRAYSDHDDRWEMKEAMSTAPEPPQPALPKE-APTQLPETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEE 426
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAApAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 427 EEIEEEEEADDEEEEPAGDHQPQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNS 506
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 528992432 507 PRTAHPADAVSPGGDQPAPASlESGPSAPGAQKAEEEGSEAAPEADPEGQETAE 560
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAP-AAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
PHA03247 PHA03247
large tegument protein UL36; Provisional
 319-571 6.80e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 6.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  319 ARPPKP----PTFREFLSQHKTEVSRRKKKSSRPQPKAAPRAYSDHDDRWEMKEAMS-----TAPEPPQPALPKEAPTQL 389
Cdd:PHA03247 2559 APPAAPdrsvPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSplppdTHAPDPPPPSPSPAANEP 2638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  390 PETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEEEEPAGD----HQPQEAEPSGSPAREHGDKE 465
Cdd:PHA03247 2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltslADPPPPPPTPEPAPHALVSA 2718

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  466 TARPEEPLPLPQA-PATPSSPFSPPGGHQPVSDWGEEMELNSPRTAHPADAVSPGGD-QPAPASLESGPSAPGAQKAEEE 543
Cdd:PHA03247 2719 TPLPPGPAAARQAsPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPaAGPPRRLTRPAVASLSESRESL 2798

                         250       260
                  ....*....|....*....|....*...
gi 528992432  544 GSEAAPEADPEGQETAEIADFQRASPNS 571
Cdd:PHA03247 2799 PSPWDPADPPAAVLAPAAALPPAASPAG 2826
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 448-558 9.68e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 9.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 448 PQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNSPRTAHPADAVSPGGDQPAPAS 527
Cdd:PRK07764 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480

                         90       100       110
                 ....*....|....*....|....*....|.
gi 528992432 528 LESGPSAPGAQKAEEEGSEAAPEADPEGQET 558
Cdd:PRK07764 481 APAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
PHA03247 PHA03247
large tegument protein UL36; Provisional
 300-555 1.38e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  300 KDGPAVALEPSHRYDDQAWARPPkPPTFREFLSQHKTEVSRRKKKSSRPQPKAAPRaysdhddRWEMKEAMSTAPEPPQP 379
Cdd:PHA03247 2605 RGDPRGPAPPSPLPPDTHAPDPP-PPSPSPAANEPDPHPPPTVPPPERPRDDPAPG-------RVSRPRRARRLGRAAQA 2676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  380 ALPKEAPTQlpetpaPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEEEEPAGDHQPQEAEPSGSPAR 459
Cdd:PHA03247 2677 SSPPQRPRR------RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT 2750

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  460 EHGDKETARPeeplPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNSPRTAHPA--DAVSPGGDQPAPASLESGPSAPGA 537
Cdd:PHA03247 2751 PGGPARPARP----PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSpwDPADPPAAVLAPAAALPPAASPAG 2826

                         250
                  ....*....|....*...
gi 528992432  538 QKAEEEGSEAAPEADPEG 555
Cdd:PHA03247 2827 PLPPPTSAQPTAPPPPPG 2844
PHA03247 PHA03247
large tegument protein UL36; Provisional
 350-549 1.68e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  350 PKAAPRAYSDHDDRWEMKEAMSTAPEPPQPALPKEAPTQLPETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEI 429
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  430 EEEEEADDEEEEPAGDHQPQEAEPSGSPAREHGDKETARPEEPLPLPQ-APATPSSPFSPPGGHQPVSDWGEEMELNSPR 508
Cdd:PHA03247 2855 SVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 528992432  509 TAHPADAVSPGGDQPAPASLESGPSAPGAQKAEEEGSEAAP 549
Cdd:PHA03247 2935 PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP 2975
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 368-553 1.74e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  368 EAMSTAPEPPQPALPKEAPTQLPETPAP------AHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEEEE 441
Cdd:PRK10263  378 EGYPQQSQYAQPAVQYNEPLQQPVQPQQpyyapaAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFA 457

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  442 PAGDHQPQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPP-------------------GGHQPVSDWGEEM 502
Cdd:PRK10263  458 PQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPlyyfeeveekrarereqlaAWYQPIPEPVKEP 537

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 528992432  503 ELNSPRTAHPADAVSPggdqPAPASLESGPSAPGAQKAEEEGSEAAPEADP 553
Cdd:PRK10263  538 EPIKSSLKAPSVAAVP----PVEAAAAVSPLASGVKKATLATGAAATVAAP 584
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 390-557 2.57e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.83  E-value: 2.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 390 PETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEEEEPAGDHQPQEAEP-SGSPAREHGDKETAR 468
Cdd:PTZ00449 511 PEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTlSKKPEFPKDPKHPKD 590

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 469 PEEPLPlPQAPATPSSPFSPPGGHQPVSDWGEEMELNSPRTAHPADAVSPggdqPAPASLESgPSAPGAQKAEEEGSEAA 548
Cdd:PTZ00449 591 PEEPKK-PKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPP----QRPSSPER-PEGPKIIKSPKPPKSPK 664


                 ....*....
gi 528992432 549 PEADPEGQE 557
Cdd:PTZ00449 665 PPFDPKFKE 673
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
306-489 3.57e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 3.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 306 ALEPSHRYDDQAWARPPKPPTFREFLSQHKTEVSRRKKKSSRPQPKAAPRAYSDHDDRWEMKEAMSTAPEPPQPALP--- 382
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQasa 441

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 383 ------KEAPTQLPETPAPAHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEEEEPAGDHQPQEAEPSGS 456
Cdd:PRK12323 442 rgpggaPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521

                        170       180       190
                 ....*....|....*....|....*....|...
gi 528992432 457 PAREHGDKETARPEEPLPlPQAPATPSSPFSPP 489
Cdd:PRK12323 522 VAESIPDPATADPDDAFE-TLAPAPAAAPAPRA 553
PHA03247 PHA03247
large tegument protein UL36; Provisional
 302-554 3.59e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 3.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  302 GPAVALEPSHRYDDQAWARPPKPPTFREFLSQHKTEVSRRKKKSSRPQPKAAPRAYSDHDDRWEMKEAMST-----APEP 376
Cdd:PHA03247 2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppaaSPAG 2826

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  377 PQPALPKEAPTQLPETPAP-----------------AHRPPEDEGEEGEDEGEDEEWEDVSEDEEEEEEIEEEEEADDEE 439
Cdd:PHA03247 2827 PLPPPTSAQPTAPPPPPGPpppslplggsvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432  440 EEPagdhQPQEAEPSGSPAREHGDKETARPEEPLPLPQAPATPSSPFSPPGGHQPVSDWGEEMELNSPRTAHPADAVSPG 519
Cdd:PHA03247 2907 RPP----QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 528992432  520 GD-QPAPASLESGPSAPGAQKAEEEGSEAAPEADPE 554
Cdd:PHA03247 2983 APsREAPASSTPPLTGHSLSRVSSWASSLALHEETD 3018
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
346-569 9.79e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.06  E-value: 9.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 346 SRPQPKAAPRAYS--DHDDRWEMKEAMSTAPEPPQPALPKEAPTQLPETPAPAHRPPEDEGEEGEDEG-----EDEEWED 418
Cdd:PRK07003 377 AGAVPAPGARAAAavGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADgdapvPAKANAR 456

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 419 VSEDEEEEEEIEEEEEADDEEEEPAGDHQP---QEAEPSGSPAREHGDKETARPEEPL-------PLPQAPATPSSPFSP 488
Cdd:PRK07003 457 ASADSRCDERDAQPPADSGSASAPASDAPPdaaFEPAPRAAAPSAATPAAVPDARAPAaasredaPAAAAPPAPEARPPT 536

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528992432 489 PGGHQPVSDWG-----------EEMELNSPRTAHPADAVSPGGDQPAPAslESGPSAPGAQKAEEEGSEAAPEADPEGQE 557
Cdd:PRK07003 537 PAAAAPAARAGgaaaaldvlrnAGMRVSSDRGARAAAAAKPAAAPAAAP--KPAAPRVAVQVPTPRARAATGDAPPNGAA 614

                        250
                 ....*....|..
gi 528992432 558 TAEIADFQRASP 569
Cdd:PRK07003 615 RAEQAAESRGAP 626
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH